Psyllid ID: psy11213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
Protein Sequence
MSFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ
Secondary Structure (PSIPRED)
ccEEEHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEccccccEEEEEcccccccccccccccccccccccccEEEEccccEEEccEEEEEEEccccccccccccccEEEEccccccccccccEEEEEEEccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccEEcccccccccccccEEEEEccccccEEEEccEEEEEcccEEEEEcccccccccHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHHcccccccccccccEEccccccccHHHHEEccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccEEEEEHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHcHHHHHHccccccccccccccccccHcccEEEEEEEEccccccccHHcccHHHcccEEEEEEEEEEEccccccEEEEEEEccccccEEEEEccccEEcccccccccccccccccccEEEEEcccEEEccEEEEEEEcccccccccccccEcEHHHHHHHHHccccccEEEcEEEEEEEcccccccEcccEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccccEEEEEEEEEccccccEEEEccHEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHEEHcHHHHHHHHcccccccccccccHHHHccccHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHcc
Coil and Loop (DISEMBL)
MSFVLIPLITLhqslfrwplsfpvadrttvsvptlSSIFQLVIYFSEKFKEFLIEFVKidkddnkiFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFEllpdykshdviakdplDIYIEHRLLLeqrnhpnpqelrnsqnrypqdlmrrfevyfvppssgkptpirevkathigklvnvrgvvtrstevkplmTVATYTcdmcgaetyqpisslsftpllmcpsedcqvnksggrlylqtrgskfvkfqelkvqehsdqvpvgniprgitvlcrgentrqvvpgdhvsvsgiflpllrtgfrqvtqgniniclmgdpgvakSQLLSYIERLARRSqyttgrgssgvgltaavmkdpitnemvLEGGALVladqgiccidefdklpdadrTAIHEVMEQQTISIAKAGIMTRLNARVSILAAanpaygrynpkrsieQNIQLPAALLSRFDLLWLiqdkpdrdndlkLAQHITYVhkhsrqpptelkpidmSLVRRYIDLckgknptvpssLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ
Flexible Loop (DISEMBL)
MSFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFvkidkddnKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVkidkddnkIFKYSKqlsklahrEQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEqrnhpnpqelrnsqnrypQDLMRRFEVYFvppssgkptpirevkathigklvnvrgvvtrstevkplmtVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKvqehsdqvpvgnipRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRsqyttgrgssgvgltAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITyvhkhsrqpptelkpidMSLVRRYIDLCkgknptvpssltEHIVKAYTELRkvarnsrdmSYTSARNLLAILRLSTALARLRLCDEFQ
Low Complexity Region (SEG)
MSFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNllailrlstalarlrlCDEFQ
Disordered region (IsUnstruct)
**FVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL*********************LMRRFEVYFVP********IREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHK*********KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLC****
Disordered Region (DISOPRED)
*SFVLIPLITLHQSLFRWPLSFPVAD***VSVPTLSSIFQLVIYFSEKFKEFLIEFVK**********YSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHR******************NRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFT**************SGGRLYLQTRGSKFVKFQELKV**************GITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYV****************SLVRRYIDLCKGKNPTVPSSLTEHIVKAYT***************SARNLLAILRLSTALARLRLCDE**
Disordered Region (DISEMBL)
MSFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQ*********VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ
Disordered Region (DISPRO)
*SFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDP***Y********Q**************RYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLC****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFVLIPLITLHQSLFRWPLSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	621	2.2.26 [Sep-21-2011]
Q9XYU0	720	DNA replication licensing	yes	N/A	0.409	0.352	0.819	1e-124
Q7ZXB1	720	DNA replication licensing	N/A	N/A	0.404	0.348	0.801	1e-122
Q6NX31	720	DNA replication licensing	yes	N/A	0.404	0.348	0.805	1e-122
Q91876	720	DNA replication licensing	N/A	N/A	0.404	0.348	0.793	1e-121
Q61881	719	DNA replication licensing	yes	N/A	0.404	0.349	0.781	1e-119
Q3ZBH9	719	DNA replication licensing	yes	N/A	0.404	0.349	0.785	1e-119
P33993	719	DNA replication licensing	yes	N/A	0.404	0.349	0.785	1e-119
O75001	760	DNA replication licensing	yes	N/A	0.410	0.335	0.625	1e-91
P38132	845	DNA replication licensing	yes	N/A	0.418	0.307	0.609	2e-90
P43299	716	Protein PROLIFERA OS=Arab	yes	N/A	0.417	0.361	0.591	4e-86

>sp|Q9XYU0|MCM7_DROME DNA replication licensing factor Mcm7 OS=Drosophila melanogaster GN=Mcm7 PE=1 SV=1

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDSVE 626

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q7ZXB1|MCM7B_XENLA DNA replication licensing factor mcm7-B OS=Xenopus laevis GN=mcm7-b PE=2 SV=1

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/252 (80%), Positives = 231/252 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNIN+CLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 371 RGNINVCLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D+DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct: 431 GALVLADQGVCCIDEFDKMMDSDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNPK+++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct: 491 YGRYNPKKTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +CK K P +P SL +++  AY E+RK AR ++DM++TSAR LL+ILR
Sbjct: 551 QPMDMKLMRRYITMCKSKQPAIPESLADYLTAAYVEMRKEARTNKDMTFTSARTLLSILR 610

Query: 607 LSTALARLRLCD 618
           LSTALARLRL D
Sbjct: 611 LSTALARLRLED 622

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6NX31|MCM7_XENTR DNA replication licensing factor mcm7 OS=Xenopus tropicalis GN=mcm7 PE=2 SV=1

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/252 (80%), Positives = 230/252 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 371 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct: 431 GALVLADQGVCCIDEFDKMMDTDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNPK+++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct: 491 YGRYNPKKTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +CK K P +P SL +++  AY E+RK AR ++DM++TSAR LL+ILR
Sbjct: 551 QPLDMKLMRRYITMCKRKQPAIPESLADYLTAAYVEMRKEARTNKDMTFTSARTLLSILR 610

Query: 607 LSTALARLRLCD 618
           LSTALARLRL D
Sbjct: 611 LSTALARLRLED 622

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q91876|MCM7A_XENLA DNA replication licensing factor mcm7-A OS=Xenopus laevis GN=mcm7-a PE=1 SV=2

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/252 (79%), Positives = 230/252 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 371 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct: 431 GALVLADQGVCCIDEFDKMMDTDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNPK+++EQNIQLPAALLSRFD+LWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct: 491 YGRYNPKKTVEQNIQLPAALLSRFDVLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +CK K P +P +L +++  AY E+RK AR ++DM++TSAR LL++LR
Sbjct: 551 QPLDMKLMRRYITMCKRKQPAIPEALADYLTAAYVEMRKEARTNKDMTFTSARTLLSVLR 610

Query: 607 LSTALARLRLCD 618
           LSTALARLRL D
Sbjct: 611 LSTALARLRLED 622

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q61881|MCM7_MOUSE DNA replication licensing factor MCM7 OS=Mus musculus GN=Mcm7 PE=2 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 228/252 (90%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNI+ICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct: 372 RGNIHICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNP+RS+EQN+QLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP + 
Sbjct: 492 YGRYNPRRSLEQNVQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQF 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +C  + PTVP SL ++I  AY E+R+ AR S+D +YTSAR LLAILR
Sbjct: 552 EPLDMKLMRRYIAMCHERQPTVPESLADYITAAYVEMRREARASKDATYTSARTLLAILR 611

Query: 607 LSTALARLRLCD 618
           LSTALARLR+ D
Sbjct: 612 LSTALARLRMVD 623

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q3ZBH9|MCM7_BOVIN DNA replication licensing factor MCM7 OS=Bos taurus GN=MCM7 PE=2 SV=1

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/252 (78%), Positives = 227/252 (90%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP + 
Sbjct: 492 YGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQF 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +C+ K P VP SL ++I  AY E+R+ A  S+D +YTSAR LLAILR
Sbjct: 552 EPLDMKLMRRYIAMCREKQPAVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILR 611

Query: 607 LSTALARLRLCD 618
           LSTALARLR+ D
Sbjct: 612 LSTALARLRMVD 623

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P33993|MCM7_HUMAN DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/252 (78%), Positives = 228/252 (90%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP++ 
Sbjct: 492 YGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQF 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           +P+DM L+RRYI +C+ K P VP SL ++I  AY E+R+ A  S+D +YTSAR LLAILR
Sbjct: 552 EPLDMKLMRRYIAMCREKQPMVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILR 611

Query: 607 LSTALARLRLCD 618
           LSTALARLR+ D
Sbjct: 612 LSTALARLRMVD 623

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for S-phase checkpoint activation upon UV-induced damage.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O75001|MCM7_SCHPO DNA replication licensing factor mcm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcm7 PE=1 SV=1

 Score =  338 bits (866), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/259 (62%), Positives = 199/259 (76%), Gaps = 4/259 (1%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +G+INICL GDPGVAKSQLL YI ++A R  YTTGRGSSGVGLTAAVM+DP+T+EMVLEG
Sbjct: 394 RGDINICLTGDPGVAKSQLLKYISKVAPRGVYTTGRGSSGVGLTAAVMRDPVTDEMVLEG 453

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLAD GICCIDEFDK+ ++DRTAIHEVMEQQTISI+KAGI T LNAR SILAAANP 
Sbjct: 454 GALVLADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGITTTLNARTSILAAANPL 513

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRYNPK +   NI LPAALLSRFD+L+LI D P R+ D  LAQH+TYVH H+ QP  + 
Sbjct: 514 YGRYNPKVAPIHNINLPAALLSRFDILFLILDTPSRETDEHLAQHVTYVHMHNEQPKMDF 573

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVAR----NSRDMSYTSARNLL 602
           +P+D +++R YI   +   P VP  + +++  AY +LR+  +    N R  ++T+ R LL
Sbjct: 574 EPLDPNMIRHYISSARQYRPVVPKDVCDYVTGAYVQLRQNQKRDEANERQFAHTTPRTLL 633

Query: 603 AILRLSTALARLRLCDEFQ 621
           AILR+  ALARLR  +  +
Sbjct: 634 AILRMGQALARLRFSNRVE 652

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Required for the progression of S phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P38132|MCM7_YEAST DNA replication licensing factor MCM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM7 PE=1 SV=4

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/264 (60%), Positives = 203/264 (76%), Gaps = 4/264 (1%)

Query: 359 RTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI 418
           R G     +G+IN+CLMGDPGVAKSQLL  I +++ R  YTTG+GSSGVGLTAAVMKDP+
Sbjct: 443 RVGDGMKIRGDINVCLMGDPGVAKSQLLKAICKISPRGVYTTGKGSSGVGLTAAVMKDPV 502

Query: 419 TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS 478
           T+EM+LEGGALVLAD GICCIDEFDK+ ++DRTAIHEVMEQQTISI+KAGI T LNAR S
Sbjct: 503 TDEMILEGGALVLADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGINTTLNARTS 562

Query: 479 ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKH 538
           ILAAANP YGRYNP+ S   NI LPAALLSRFD+L+L+ D P RD+D KLA+H+TYVH H
Sbjct: 563 ILAAANPLYGRYNPRLSPLDNINLPAALLSRFDILFLMLDIPSRDDDEKLAEHVTYVHMH 622

Query: 539 SRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYT-- 596
           ++QP  +  P++ S +R YI   K K P +  ++ +++V+AY  LR+ ++   D  ++  
Sbjct: 623 NKQPDLDFTPVEPSKMREYIAYAKTKRPVMSEAVNDYVVQAYIRLRQDSKREMDSKFSFG 682

Query: 597 --SARNLLAILRLSTALARLRLCD 618
             + R LL I+RLS ALA+LRL D
Sbjct: 683 QATPRTLLGIIRLSQALAKLRLAD 706

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Once loaded onto DNA, double hexamers can slide on dsDNA in the absence of ATPase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P43299|PROL_ARATH Protein PROLIFERA OS=Arabidopsis thaliana GN=PRL PE=1 SV=2

 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/262 (59%), Positives = 204/262 (77%), Gaps = 3/262 (1%)

Query: 358 LRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDP 417
           L+ G +   +G+++ICLMGDPGVAKSQLL +I  +A R  YTTG+GSSGVGLTAAVM+D 
Sbjct: 360 LKDGMK--IRGDVHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQ 417

Query: 418 ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV 477
           +TNEMVLEGGALVLAD GIC IDEFDK+ ++DRTAIHEVMEQQT+SIAKAGI T LNAR 
Sbjct: 418 VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477

Query: 478 SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHK 537
           ++LAAANPA+GRY+ +R+  +NI LP ALLSRFDLLWLI D+ D D+DL+LA+H+ +VH+
Sbjct: 478 AVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLELAKHVLHVHQ 537

Query: 538 HSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRK-VARNSRDMSYT 596
               P    +P++ +++R YI   +  +P VP+ L E+I  AY+ +R+  A+++   SYT
Sbjct: 538 TEESPALGFEPLEPNILRAYISAARRLSPYVPAELEEYIATAYSSIRQEEAKSNTPHSYT 597

Query: 597 SARNLLAILRLSTALARLRLCD 618
           + R LL+ILR+S ALARLR  +
Sbjct: 598 TVRTLLSILRISAALARLRFSE 619

Required for megagametophyte and embryo development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
427792767	634	Putative dna replication licensing facto	0.787	0.771	0.670	0.0
328710700	724	PREDICTED: DNA replication licensing fac	0.404	0.346	0.845	1e-123
195588887	607	GD14135 [Drosophila simulans] gi|1941961	0.409	0.418	0.819	1e-123
17647617	720	minichromosome maintenance 7 [Drosophila	0.409	0.352	0.819	1e-123
194748867	721	GF24361 [Drosophila ananassae] gi|190624	0.407	0.350	0.819	1e-123
195491035	720	GE20787 [Drosophila yakuba] gi|194179492	0.409	0.352	0.819	1e-123
194865768	720	GG14355 [Drosophila erecta] gi|190653377	0.409	0.352	0.819	1e-123
195125904	720	GI12937 [Drosophila mojavensis] gi|19391	0.409	0.352	0.819	1e-122
125978096	720	GA18569 [Drosophila pseudoobscura pseudo	0.409	0.352	0.819	1e-122
195428459	720	GK16745 [Drosophila willistoni] gi|19415	0.409	0.352	0.811	1e-122

>gi|427792767|gb|JAA61835.1| Putative dna replication licensing factor mcm4 component, partial [Rhipicephalus pulchellus]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/537 (67%), Positives = 424/537 (78%), Gaps = 48/537 (8%)

Query: 129 DDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQR 188
           DDVE+++S LA  I  N RRY  +F+++++E+LPDYK  +++AKD LD+YIEHR+L+E R
Sbjct: 1   DDVEDYDSGLAEAIMQNARRYSNLFADVVYEMLPDYKQKEILAKDALDVYIEHRMLMENR 60

Query: 189 NHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRST 248
           +   P ++R+ +N+YP +LMRR+EVYF  PS+ KP  +R+VKA  IGKLV V+G+VTR T
Sbjct: 61  SR-QPGDVRDPRNKYPPELMRRYEVYFKMPSATKPLSVRDVKAGCIGKLVTVKGIVTRCT 119

Query: 249 EVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVK 308
           EVKP+M VATYTCD CGAETYQPI+S SF PL+ CPS+DC+VN+SGGRLYLQTRGSKF+K
Sbjct: 120 EVKPIMCVATYTCDQCGAETYQPINSPSFMPLVTCPSDDCRVNRSGGRLYLQTRGSKFIK 179

Query: 309 FQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQV--- 365
           FQELK+QEHSDQVPVGNIPR +TV  RGE TR  +PGDHVSV+GIFLPLLRTGFRQ+   
Sbjct: 180 FQELKIQEHSDQVPVGNIPRSMTVYVRGELTRSALPGDHVSVTGIFLPLLRTGFRQMQGG 239

Query: 366 -------------------------------------------TQGNINICLMGDPGVAK 382
                                                       +GNINICLMGDPGVAK
Sbjct: 240 LLSDTYLEAHRIVKMNKMEDDELDDSMMTPEELEALRHPNGMKIRGNINICLMGDPGVAK 299

Query: 383 SQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEF 442
           SQLLSYI+RLA RSQYTTGRGSSGVGLTA+VMKDP+T EM LEGGALVLAD+G+CCIDEF
Sbjct: 300 SQLLSYIDRLAPRSQYTTGRGSSGVGLTASVMKDPLTGEMTLEGGALVLADRGVCCIDEF 359

Query: 443 DKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQL 502
           DK+ D+DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPAYGRYNPKRSIEQN+QL
Sbjct: 360 DKMMDSDRTAIHEVMEQQTISIAKAGIMTTLNARTSILAAANPAYGRYNPKRSIEQNVQL 419

Query: 503 PAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL-KPIDMSLVRRYIDLC 561
           PAALLSRFDLLWLIQDKPDR+NDL+LA HIT+VHK+  +PP    KP+DM L+RRYI LC
Sbjct: 420 PAALLSRFDLLWLIQDKPDRENDLRLANHITFVHKNCSEPPQGTHKPLDMRLMRRYIALC 479

Query: 562 KGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCD 618
           K K P VP  LT++IV AY E+RK ARNS+D ++ S R LLAILRLSTALARLRL +
Sbjct: 480 KSKQPVVPEELTDYIVSAYVEMRKEARNSKDATFMSPRTLLAILRLSTALARLRLVE 536

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710700|ref|XP_001952343.2| PREDICTED: DNA replication licensing factor mcm7-like isoform 1 [Acyrthosiphon pisum] gi|328710702|ref|XP_003244337.1| PREDICTED: DNA replication licensing factor mcm7-like isoform 2 [Acyrthosiphon pisum]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/252 (84%), Positives = 237/252 (94%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +G+INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDP+TNEMVLEG
Sbjct: 377 RGSINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPLTNEMVLEG 436

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ ++DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA
Sbjct: 437 GALVLADQGVCCIDEFDKMAESDRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 496

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           YGRY+PKRSIE NIQLPAALLSRFDLLWLIQDKP+R+NDLKLAQHITYVHKHS QPP+E+
Sbjct: 497 YGRYDPKRSIEANIQLPAALLSRFDLLWLIQDKPNRENDLKLAQHITYVHKHSCQPPSEV 556

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           + +DMSL+RRYIDLCK K PTVP  LTE +V +Y +LRK +RN+ D ++TSARNLLAILR
Sbjct: 557 QALDMSLMRRYIDLCKKKTPTVPVELTEFLVDSYVDLRKDSRNNGDTTFTSARNLLAILR 616

Query: 607 LSTALARLRLCD 618
           +STALA+LRL D
Sbjct: 617 ISTALAKLRLSD 628

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588887|ref|XP_002084188.1| GD14135 [Drosophila simulans] gi|194196197|gb|EDX09773.1| GD14135 [Drosophila simulans]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 259 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 318

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 319 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 378

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 379 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 438

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 439 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 498

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 499 LSTALARLRLSDSVE 513

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647617|ref|NP_523984.1| minichromosome maintenance 7 [Drosophila melanogaster] gi|75029476|sp|Q9XYU0.1|MCM7_DROME RecName: Full=DNA replication licensing factor Mcm7; AltName: Full=Minichromosome maintenance 7 protein; Short=DmMCM3 gi|4903288|gb|AAD32857.1|AF124743_1 DNA replication factor MCM7 [Drosophila melanogaster] gi|7295030|gb|AAF50357.1| minichromosome maintenance 7 [Drosophila melanogaster] gi|25012341|gb|AAN71281.1| RE04406p [Drosophila melanogaster] gi|220949456|gb|ACL87271.1| Mcm7-PA [synthetic construct]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDSVE 626

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194748867|ref|XP_001956863.1| GF24361 [Drosophila ananassae] gi|190624145|gb|EDV39669.1| GF24361 [Drosophila ananassae]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 373 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 432

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 433 GALVLADQGVCCIDEFDKMADTDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 492

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 493 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 552

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 553 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 612

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 613 LSTALARLRLSDRVE 627

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491035|ref|XP_002093391.1| GE20787 [Drosophila yakuba] gi|194179492|gb|EDW93103.1| GE20787 [Drosophila yakuba]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDSVE 626

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865768|ref|XP_001971594.1| GG14355 [Drosophila erecta] gi|190653377|gb|EDV50620.1| GG14355 [Drosophila erecta]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDSVE 626

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125904|ref|XP_002007414.1| GI12937 [Drosophila mojavensis] gi|193919023|gb|EDW17890.1| GI12937 [Drosophila mojavensis]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 232/255 (90%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAIRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADTDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HSRQPP+ +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSRQPPSRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KSLDMHLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDRVE 626

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125978096|ref|XP_001353081.1| GA18569 [Drosophila pseudoobscura pseudoobscura] gi|54641832|gb|EAL30582.1| GA18569 [Drosophila pseudoobscura pseudoobscura]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM+LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLALRSQYTTGRGSSGVGLTAAVMKDPLTGEMMLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADTDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HSRQPP+ +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHCHSRQPPSRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KSLDMHLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDRVE 626

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428459|ref|XP_002062290.1| GK16745 [Drosophila willistoni] gi|194158375|gb|EDW73276.1| GK16745 [Drosophila willistoni]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/255 (81%), Positives = 233/255 (91%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct: 372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct: 432 GALVLADQGVCCIDEFDKMADTDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPP+ +
Sbjct: 492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPSRV 551

Query: 547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606
           K +DM+L+RRYI+LC+ KNPT+P  LT++IV AY ELR+ ARN +DM++TSARNLL ILR
Sbjct: 552 KALDMNLMRRYINLCRRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARNLLGILR 611

Query: 607 LSTALARLRLCDEFQ 621
           LSTALARLRL D  +
Sbjct: 612 LSTALARLRLSDHVE 626

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
FB|FBgn0020633	720	Mcm7 "Minichromosome maintenan	0.376	0.325	0.824	1.5e-203
UNIPROTKB|Q91876	720	mcm7-a "DNA replication licens	0.375	0.323	0.793	2.1e-202
UNIPROTKB|Q6NX31	720	mcm7 "DNA replication licensin	0.375	0.323	0.802	1.9e-201
UNIPROTKB|Q7ZXB1	720	mcm7-b "DNA replication licens	0.375	0.323	0.798	1.3e-200
UNIPROTKB|E2RNU4	719	MCM7 "Uncharacterized protein"	0.375	0.324	0.785	4.1e-199
UNIPROTKB|Q3ZBH9	719	MCM7 "DNA replication licensin	0.375	0.324	0.781	2.2e-198
UNIPROTKB|P33993	719	MCM7 "DNA replication licensin	0.375	0.324	0.781	3.6e-198
ZFIN|ZDB-GENE-020419-27	721	mcm7 "MCM7 minichromosome main	0.407	0.350	0.751	4.6e-198
RGD|1303018	719	Mcm7 "minichromosome maintenan	0.407	0.351	0.736	7.5e-198
MGI|MGI:1298398	719	Mcm7 "minichromosome maintenan	0.407	0.351	0.732	1.1e-196

FB|FBgn0020633 Mcm7 "Minichromosome maintenance 7" [Drosophila melanogaster (taxid:7227)]

 Score = 1026 (366.2 bits), Expect = 1.5e-203, Sum P(2) = 1.5e-203
 Identities = 193/234 (82%), Positives = 216/234 (92%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLL YI RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct:   372 RGNINICLMGDPGVAKSQLLGYISRLAVRSQYTTGRGSSGVGLTAAVMKDPLTGEMTLEG 431

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNARVSILAAANPA
Sbjct:   432 GALVLADQGVCCIDEFDKMADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPA 491

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             +GRYNP+R++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LA+HITYVH HS+QPPT +
Sbjct:   492 FGRYNPRRTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTRV 551

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARN 600
             K +DM+L+RRYI+LCK KNPT+P  LT++IV AY ELR+ ARN +DM++TSARN
Sbjct:   552 KALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTFTSARN 605

GO:0003682 "chromatin binding" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISS

GO:0005656 "pre-replicative complex" evidence=ISS;NAS

GO:0006267 "pre-replicative complex assembly" evidence=ISS;NAS

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

UNIPROTKB|Q91876 mcm7-a "DNA replication licensing factor mcm7-A" [Xenopus laevis (taxid:8355)]

 Score = 1001 (357.4 bits), Expect = 2.1e-202, Sum P(2) = 2.1e-202
 Identities = 185/233 (79%), Positives = 213/233 (91%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct:   371 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct:   431 GALVLADQGVCCIDEFDKMMDTDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNPK+++EQNIQLPAALLSRFD+LWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct:   491 YGRYNPKKTVEQNIQLPAALLSRFDVLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +CK K P +P +L +++  AY E+RK AR ++DM++TSAR
Sbjct:   551 QPLDMKLMRRYITMCKRKQPAIPEALADYLTAAYVEMRKEARTNKDMTFTSAR 603

GO:0000785 "chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

UNIPROTKB|Q6NX31 mcm7 "DNA replication licensing factor mcm7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1007 (359.5 bits), Expect = 1.9e-201, Sum P(2) = 1.9e-201
 Identities = 187/233 (80%), Positives = 213/233 (91%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct:   371 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ D DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct:   431 GALVLADQGVCCIDEFDKMMDTDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNPK+++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct:   491 YGRYNPKKTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +CK K P +P SL +++  AY E+RK AR ++DM++TSAR
Sbjct:   551 QPLDMKLMRRYITMCKRKQPAIPESLADYLTAAYVEMRKEARTNKDMTFTSAR 603

GO:0000785 "chromatin" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|Q7ZXB1 mcm7-b "DNA replication licensing factor mcm7-B" [Xenopus laevis (taxid:8355)]

 Score = 1008 (359.9 bits), Expect = 1.3e-200, Sum P(2) = 1.3e-200
 Identities = 186/233 (79%), Positives = 214/233 (91%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNIN+CLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAVMKDP+T EM LEG
Sbjct:   371 RGNINVCLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEG 430

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ D+DRTAIHEVMEQQTISIAKAGIMT LNAR SILAAANPA
Sbjct:   431 GALVLADQGVCCIDEFDKMMDSDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPA 490

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNPK+++EQNIQLPAALLSRFDLLWLIQDKPDRDNDL+LAQHITYVH+HS+QPP++ 
Sbjct:   491 YGRYNPKKTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQF 550

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +CK K P +P SL +++  AY E+RK AR ++DM++TSAR
Sbjct:   551 QPMDMKLMRRYITMCKSKQPAIPESLADYLTAAYVEMRKEARTNKDMTFTSAR 603

GO:0000785 "chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

UNIPROTKB|E2RNU4 MCM7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 979 (349.7 bits), Expect = 4.1e-199, Sum P(2) = 4.1e-199
 Identities = 183/233 (78%), Positives = 211/233 (90%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct:   372 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct:   432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP + 
Sbjct:   492 YGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQF 551

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +C+ K PTVP SL ++I  AY E+R+ A  S+D +YTSAR
Sbjct:   552 EPLDMKLMRRYISMCREKQPTVPESLADYITAAYVEMRREAWASKDATYTSAR 604

GO:0042555 "MCM complex" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

UNIPROTKB|Q3ZBH9 MCM7 "DNA replication licensing factor MCM7" [Bos taurus (taxid:9913)]

 Score = 972 (347.2 bits), Expect = 2.2e-198, Sum P(2) = 2.2e-198
 Identities = 182/233 (78%), Positives = 210/233 (90%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct:   372 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct:   432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP + 
Sbjct:   492 YGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQF 551

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +C+ K P VP SL ++I  AY E+R+ A  S+D +YTSAR
Sbjct:   552 EPLDMKLMRRYIAMCREKQPAVPESLADYITAAYVEMRREAWASKDATYTSAR 604

GO:0005634 "nucleus" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

UNIPROTKB|P33993 MCM7 "DNA replication licensing factor MCM7" [Homo sapiens (taxid:9606)]

 Score = 972 (347.2 bits), Expect = 3.6e-198, Sum P(2) = 3.6e-198
 Identities = 182/233 (78%), Positives = 211/233 (90%)

Query:   367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
             +GNINICLMGDPGVAKSQLLSYI+RLA RSQYTTGRGSSGVGLTAAV++D ++ E+ LEG
Sbjct:   372 RGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEG 431

Query:   427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
             GALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQTISIAKAGI+T LNAR SILAAANPA
Sbjct:   432 GALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPA 491

Query:   487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
             YGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PDRDNDL+LAQHITYVH+HSRQPP++ 
Sbjct:   492 YGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQF 551

Query:   547 KPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599
             +P+DM L+RRYI +C+ K P VP SL ++I  AY E+R+ A  S+D +YTSAR
Sbjct:   552 EPLDMKLMRRYIAMCREKQPMVPESLADYITAAYVEMRREAWASKDATYTSAR 604

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042325 "regulation of phosphorylation" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0003677 "DNA binding" evidence=TAS

GO:0042555 "MCM complex" evidence=IDA;IMP

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA

GO:0000785 "chromatin" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

ZFIN|ZDB-GENE-020419-27 mcm7 "MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 983 (351.1 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
 Identities = 194/258 (75%), Positives = 215/258 (83%)

Query:   347 HVSVSGIFLPLLRTGFRQVTQG-----NINICLMGDPGVAKSQLLSYIERLARRSQYTTG 401
             H  V    L LL  G  Q  +G     NINICLMGDPGVAKSQLLSYI+RLA RSQYTTG
Sbjct:   347 HEDVKKALLLLLVGGVEQAPRGMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTG 406

Query:   402 RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQT 461
             RGSSGVGLTAAVM+DP+T EM LEGGALVLAD G+CCIDEFDK+ DADRTAIHEVMEQQT
Sbjct:   407 RGSSGVGLTAAVMRDPVTGEMTLEGGALVLADLGVCCIDEFDKMADADRTAIHEVMEQQT 466

Query:   462 ISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521
             ISIAKAGIMT LNAR SILAAANPAYGRYNP++SIEQNIQLPAALLSRFDLLWLIQD+PD
Sbjct:   467 ISIAKAGIMTSLNARCSILAAANPAYGRYNPRKSIEQNIQLPAALLSRFDLLWLIQDRPD 526

Query:   522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT 581
              ++DL+LAQHITYVH+H RQPPT   PIDM L+RRYI  CK K P VP SL+++I  AY 
Sbjct:   527 AESDLRLAQHITYVHQHCRQPPTHFTPIDMKLMRRYISKCKQKQPVVPESLSDYITAAYV 586

Query:   582 ELRKVARNSRDMSYTSAR 599
             E+RK AR S+D ++TSAR
Sbjct:   587 EMRKEARVSKDTTFTSAR 604

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

RGD|1303018 Mcm7 "minichromosome maintenance complex component 7" [Rattus norvegicus (taxid:10116)]

 Score = 980 (350.0 bits), Expect = 7.5e-198, Sum P(2) = 7.5e-198
 Identities = 190/258 (73%), Positives = 219/258 (84%)

Query:   347 HVSVSGIFLPLLRTGFRQVTQG-----NINICLMGDPGVAKSQLLSYIERLARRSQYTTG 401
             H  V    L LL  G  Q  QG     NI+ICLMGDPGVAKSQLLSYI+RLA RSQYTTG
Sbjct:   347 HEDVKKALLLLLVGGVDQSPQGMKIRGNIHICLMGDPGVAKSQLLSYIDRLAPRSQYTTG 406

Query:   402 RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQT 461
             RGSSGVGLTAAV++D ++ E+ LEGGALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQT
Sbjct:   407 RGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQT 466

Query:   462 ISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521
             ISIAKAGI+T LNAR SILAAANPAYGRYNP+RS+EQNIQLPAALLSRFDLLWLIQD+PD
Sbjct:   467 ISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPD 526

Query:   522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT 581
             RDNDL+LAQHITYVH+HSRQPP + +P+DM L+RRYI +C+ + PTVP SL ++I  AY 
Sbjct:   527 RDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCRERQPTVPDSLADYITAAYV 586

Query:   582 ELRKVARNSRDMSYTSAR 599
             E+R+ AR S+D +YTSAR
Sbjct:   587 EMRREARASKDATYTSAR 604

GO:0003677 "DNA binding" evidence=TAS

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006260 "DNA replication" evidence=TAS

GO:0006268 "DNA unwinding involved in replication" evidence=IEA;ISO

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006974 "response to DNA damage stimulus" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=ISO;TAS

GO:0042325 "regulation of phosphorylation" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042555 "MCM complex" evidence=IEA;ISO

GO:0071310 "cellular response to organic substance" evidence=IEP

GO:0071364 "cellular response to epidermal growth factor stimulus" evidence=IEP

GO:0003678 "DNA helicase activity" evidence=ISO

MGI|MGI:1298398 Mcm7 "minichromosome maintenance deficient 7 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 976 (348.6 bits), Expect = 1.1e-196, Sum P(2) = 1.1e-196
 Identities = 189/258 (73%), Positives = 218/258 (84%)

Query:   347 HVSVSGIFLPLLRTGFRQVTQG-----NINICLMGDPGVAKSQLLSYIERLARRSQYTTG 401
             H  V    L LL  G  Q  QG     NI+ICLMGDPGVAKSQLLSYI+RLA RSQYTTG
Sbjct:   347 HEDVKKALLLLLVGGVDQSPQGMKIRGNIHICLMGDPGVAKSQLLSYIDRLAPRSQYTTG 406

Query:   402 RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQT 461
             RGSSGVGLTAAV++D ++ E+ LEGGALVLADQG+CCIDEFDK+ +ADRTAIHEVMEQQT
Sbjct:   407 RGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQT 466

Query:   462 ISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521
             ISIAKAGI+T LNAR SILAAANPAYGRYNP+RS+EQN+QLPAALLSRFDLLWLIQD+PD
Sbjct:   467 ISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNVQLPAALLSRFDLLWLIQDRPD 526

Query:   522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT 581
             RDNDL+LAQHITYVH+HSRQPP + +P+DM L+RRYI +C  + PTVP SL ++I  AY 
Sbjct:   527 RDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCHERQPTVPESLADYITAAYV 586

Query:   582 ELRKVARNSRDMSYTSAR 599
             E+R+ AR S+D +YTSAR
Sbjct:   587 EMRREARASKDATYTSAR 604

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IPI

GO:0004386 "helicase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IPI

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=ISO

GO:0042555 "MCM complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33993	MCM7_HUMAN	3, ., 6, ., 4, ., 1, 2	0.7857	0.4041	0.3490	yes	N/A
Q9XYU0	MCM7_DROME	3, ., 6, ., 4, ., 1, 2	0.8196	0.4090	0.3527	yes	N/A
O75001	MCM7_SCHPO	3, ., 6, ., 4, ., 1, 2	0.6254	0.4106	0.3355	yes	N/A
Q3ZBH9	MCM7_BOVIN	3, ., 6, ., 4, ., 1, 2	0.7857	0.4041	0.3490	yes	N/A
P43299	PROL_ARATH	No assigned EC number	0.5916	0.4170	0.3617	yes	N/A
P38132	MCM7_YEAST	3, ., 6, ., 4, ., 1, 2	0.6098	0.4186	0.3076	yes	N/A
Q61881	MCM7_MOUSE	3, ., 6, ., 4, ., 1, 2	0.7817	0.4041	0.3490	yes	N/A
Q6NX31	MCM7_XENTR	3, ., 6, ., 4, ., 1, 2	0.8055	0.4041	0.3486	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	621
smart00350	509	smart00350, MCM, minichromosome maintenance protei	1e-136
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	1e-136
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	1e-104
PTZ00111	915	PTZ00111, PTZ00111, DNA replication licensing fact	5e-57
smart00350	509	smart00350, MCM, minichromosome maintenance protei	4e-47
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	3e-41
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	7e-10
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	4e-08
COG1239	423	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme	5e-04

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  407 bits (1049), Expect = e-136
 Identities = 140/257 (54%), Positives = 179/257 (69%), Gaps = 5/257 (1%)

Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
           G+INI L GDPG AKSQLL Y+E+ A R+ YTTG+GSS VGLTAAV +DP T E  LE G
Sbjct: 235 GDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAG 294

Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
           ALVLAD G+CCIDEFDK+ D+DRTAIHE MEQQTISIAKAGI T LNAR S+LAAANP  
Sbjct: 295 ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354

Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL- 546
           GRY+PK + E+NI LPA +LSRFDLL+++ D+ D + D +LA+H+  +H++S     E  
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF 414

Query: 547 -KPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMS--YTSARNLL 602
             P+    +R+YI   + K  P +     + +VKAY +LRK    +   S    + R L 
Sbjct: 415 EPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQLE 474

Query: 603 AILRLSTALARLRLCDE 619
           +I+RLS A A++RL D 
Sbjct: 475 SIIRLSEAHAKMRLSDV 491

Length = 509

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score =  399 bits (1028), Expect = e-136
 Identities = 139/254 (54%), Positives = 181/254 (71%), Gaps = 2/254 (0%)

Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
           G+IN+ L+GDPG AKSQLL Y+ +LA R+ YT+G+GSS  GLTAAV++DP T E  LE G
Sbjct: 56  GDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAG 115

Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
           ALVLAD G+CCIDEFDK+ + DR AIHE MEQQTISIAKAGI+  LNAR S+LAAANP +
Sbjct: 116 ALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIF 175

Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELK 547
           GRY+PK+S+ +NI LP  LLSRFDL++++ DKPD + D +LA+HI  +H+ S +   E +
Sbjct: 176 GRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHIVDLHRASDEEEIETE 235

Query: 548 P-IDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL 605
             ID  L+R+YI   +    P +     E +V  Y ELRK +  SR     + R L +++
Sbjct: 236 DEIDPELLRKYIAYARENIKPKLSDEAREKLVNWYVELRKESEGSRGSIPITVRQLESLI 295

Query: 606 RLSTALARLRLCDE 619
           RLS A ARLRL +E
Sbjct: 296 RLSEAHARLRLSEE 309

Length = 327

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  329 bits (846), Expect = e-104
 Identities = 131/261 (50%), Positives = 174/261 (66%), Gaps = 10/261 (3%)

Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
           G+I+I L+GDPG AKSQLL Y+ +LA R  YT+G+GSS  GLTAAV++D +T E VLE G
Sbjct: 318 GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAG 377

Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
           ALVLAD G+CCIDEFDK+ + DR AIHE MEQQTISIAKAGI   LNAR S+LAAANP +
Sbjct: 378 ALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF 437

Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELK 547
           GRY+PK+++ +NI LPA LLSRFDL+++++D PD + D ++A+HI   H+      T   
Sbjct: 438 GRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL 497

Query: 548 P-------IDMSLVRRYIDLCKGKN-PTVPSSLTEHIVKAYTELRK-VARNSRDMSY-TS 597
                    D  L+R+YI   +    P +     E +   Y E+RK  A      +   +
Sbjct: 498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPIT 557

Query: 598 ARNLLAILRLSTALARLRLCD 618
           AR L +I+RL+ A A++RL D
Sbjct: 558 ARQLESIIRLAEAHAKMRLSD 578

Length = 682

>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional

 Score =  206 bits (526), Expect = 5e-57
 Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 49/301 (16%)

Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAV-MKDPITNEMVLE 425
           +G IN+ L GDPG AKSQLL Y   L+ RS YT+G+ SS VGLTA++   +      +++
Sbjct: 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQ 549

Query: 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485
            GA+VLA+ G+CCIDE DK  +  R +++EVMEQQT++IAKAGI+  L A  +ILA+ NP
Sbjct: 550 PGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNP 609

Query: 486 AYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHI------------- 532
              RYN  +++ +NI +  +L +RFDL++L+ D  D+D D  ++  I             
Sbjct: 610 INSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG 669

Query: 533 ----TY-------VHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAY 580
               TY       V   S +   +    D+ ++R YI   K    P +     + I + Y
Sbjct: 670 NDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREY 729

Query: 581 TELRKVARNSRD-----------------------MSYTSARNLLAILRLSTALARLRLC 617
            ++R+    + +                       M Y S+R + +I+R+S +LAR+RL 
Sbjct: 730 VKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLS 789

Query: 618 D 618
            
Sbjct: 790 T 790

Length = 915

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  172 bits (439), Expect = 4e-47
 Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 222 KPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLL 281
           KP+ IRE++A H+GKLV + G+VTR++ V+P +  A++TC+ CGA     I S   T   
Sbjct: 1   KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPT 60

Query: 282 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQ 341
           +CP  +CQ            R S F+ FQ++K+QE  ++VPVG +PR + V+  G+   +
Sbjct: 61  VCPPRECQSPTP--FSLNHER-STFIDFQKIKLQESPEEVPVGQLPRSVDVILDGDLVDK 117

Query: 342 VVPGDHVSVSGIFLPLLRTGFRQVTQGN 369
             PGD V V+GI+  +   GF+  T   
Sbjct: 118 AKPGDRVEVTGIYRNVP-YGFKLNTVKG 144

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  159 bits (403), Expect = 3e-41
 Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 44/257 (17%)

Query: 100 DKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFE 159
             +D   +  +  L K+ +R    + +DL D+EE++ +LA  +  N    + +F + + E
Sbjct: 12  KWEDILEYAENIILDKIINRS---LEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDE 68

Query: 160 LLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPS 219
                            I +     +++                     ++  V F    
Sbjct: 69  -----------------IALLLFPEVDRSL-------------------KKIHVRFKN-- 90

Query: 220 SGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTP 279
                 IRE+++ HIGKLV+V G+VTR++EV+P +  A + C  CG E     S     P
Sbjct: 91  LPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFRVEP 150

Query: 280 LLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENT 339
              C +         G L L  R S+F+ FQ++K+QE  + VP G +PR I V+   +  
Sbjct: 151 PRECENCGK---FGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLV 207

Query: 340 RQVVPGDHVSVSGIFLP 356
             V PGD V ++G+   
Sbjct: 208 DSVRPGDRVKITGVVRI 224

Length = 682

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 38/258 (14%)

Query: 376 GDPGVAKSQLLSYIERLARRSQYT--------TGRGSSGVGLTAAVMKDPITNEMVLEGG 427
           G PGV K+ L      LAR                 S  +G  A         E     G
Sbjct: 50  GPPGVGKTLL---ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPG 106

Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
            L  A + I  +DE ++ P   + A+ E +E++ +++     + RL     ++A  NP  
Sbjct: 107 PLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI-RLPPPFIVIATQNPGE 165

Query: 488 --GRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDNDLK-LAQHITYVHKHSRQPP 543
             G Y           LP ALL RF L +++  D PD + + + +   +           
Sbjct: 166 YEGTY----------PLPEALLDRFLLRIYV--DYPDSEEEERIILARVG--GVDELDLE 211

Query: 544 TELKPI--DMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL 601
           + +KP+  D  L+R   ++   K   V   + ++IV     LR+    +      S R  
Sbjct: 212 SLVKPVLSDEELLRLQKEV---KKVPVSDEVIDYIVTLVAALREAPDVALGA---SPRAS 265

Query: 602 LAILRLSTALARLRLCDE 619
           LA+L    ALA L   D 
Sbjct: 266 LALLAALRALALLDGRDA 283

Length = 329

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI---TNEMVLEGG 427
            + L+G PG  KS+L   +            + +     T   +K              G
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTR--DTTEEDLKGRRNIDPGGASWVDG 58

Query: 428 ALVLADQ--GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG-IMTRLNARVSILAAAN 484
            LV A +   I  +DE ++       ++  +++++ + + + G ++        ++A  N
Sbjct: 59  PLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLIATMN 118

Query: 485 PAYGRYNPKRSIEQNIQLPAALLSRF 510
           P     N          L  AL SRF
Sbjct: 119 PLDRGLNE---------LSPALRSRF 135

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 423 VLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA 482
             + G L  A++GI  +DE + L D    A+ +V  +    + + GI  R  AR  ++  
Sbjct: 134 AFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT 193

Query: 483 ANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512
            NP  G   P+            LL RF L
Sbjct: 194 MNPEEGELRPQ------------LLDRFGL 211

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	621
KOG0482|consensus	721		100.0
KOG0480|consensus	764		100.0
KOG0477|consensus	854		100.0
COG1241	682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0478|consensus	804		100.0
KOG0481|consensus	729		100.0
KOG0479|consensus	818		100.0
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	100.0
smart00350	509	MCM minichromosome maintenance proteins.	100.0
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	100.0
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.93
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.92
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.92
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.91
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.91
PRK09862	506	putative ATP-dependent protease; Provisional	99.9
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.9
PRK13531	498	regulatory ATPase RavA; Provisional	99.88
COG0714	329	MoxR-like ATPases [General function prediction onl	99.87
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.87
PF07726	131	AAA_3: ATPase family associated with various cellu	99.86
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.86
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.85
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.83
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.83
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.8
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.69
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.67
PHA02244	383	ATPase-like protein	99.66
PF14551	121	MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1	99.65
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.64
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.56
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.5
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.48
PRK13765	637	ATP-dependent protease Lon; Provisional	99.45
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.44
COG2204	464	AtoC Response regulator containing CheY-like recei	99.42
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.4
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.4
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.39
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.38
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.37
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.34
CHL00181	287	cbbX CbbX; Provisional	99.33
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.33
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.3
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.29
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.28
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.28
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.24
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.23
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.23
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.22
KOG0737|consensus	386		99.2
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.2
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.19
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.18
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.16
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.15
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.14
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	99.11
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.11
KOG2004|consensus	906		99.11
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.11
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.11
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.1
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.09
KOG0734|consensus	752		99.09
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.08
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.08
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.07
CHL00195	489	ycf46 Ycf46; Provisional	99.07
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.04
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.04
KOG0738|consensus	491		99.01
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.0
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.99
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.99
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.98
PRK15115	444	response regulator GlrR; Provisional	98.97
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.95
KOG2028|consensus	554		98.95
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.94
CHL00095	821	clpC Clp protease ATP binding subunit	98.93
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.91
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.91
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.91
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.91
KOG0745|consensus	564		98.91
PF00004	132	AAA: ATPase family associated with various cellula	98.91
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.91
PRK13342	413	recombination factor protein RarA; Reviewed	98.9
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.89
CHL00176	638	ftsH cell division protein; Validated	98.87
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.87
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.87
PLN03025	319	replication factor C subunit; Provisional	98.86
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.86
CHL00206	2281	ycf2 Ycf2; Provisional	98.85
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.85
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.85
PRK10865	857	protein disaggregation chaperone; Provisional	98.85
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.84
PRK13341	725	recombination factor protein RarA/unknown domain f	98.84
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.84
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.83
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.82
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.81
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.79
KOG0736|consensus	953		98.79
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.78
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.78
KOG0730|consensus	693		98.77
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	98.76
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.74
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.74
KOG0733|consensus	802		98.73
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.73
PRK10865	857	protein disaggregation chaperone; Provisional	98.72
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.71
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.7
KOG0733|consensus	802		98.69
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.68
CHL00095	821	clpC Clp protease ATP binding subunit	98.65
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.65
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.64
PHA02544	316	44 clamp loader, small subunit; Provisional	98.64
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.63
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.63
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.62
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.62
PRK06620	214	hypothetical protein; Validated	98.61
KOG0652|consensus	424		98.6
PRK08084	235	DNA replication initiation factor; Provisional	98.59
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.58
KOG0731|consensus	774		98.57
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.57
KOG0727|consensus	408		98.55
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.55
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.55
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.54
KOG0740|consensus	428		98.54
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.53
KOG0989|consensus	346		98.51
KOG0739|consensus	439		98.51
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.5
PRK12402	337	replication factor C small subunit 2; Reviewed	98.49
KOG0742|consensus	630		98.49
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.49
COG1067	647	LonB Predicted ATP-dependent protease [Posttransla	98.48
PRK06893	229	DNA replication initiation factor; Validated	98.47
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.46
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.46
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.46
PRK08727	233	hypothetical protein; Validated	98.44
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.43
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.42
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.41
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.41
KOG0743|consensus	457		98.41
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.4
PRK04195	482	replication factor C large subunit; Provisional	98.39
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.39
smart00382	148	AAA ATPases associated with a variety of cellular	98.38
PRK09087	226	hypothetical protein; Validated	98.38
PHA01747	425	putative ATP-dependent protease	98.38
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.37
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.36
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.34
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.32
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.31
KOG0726|consensus	440		98.31
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.3
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.3
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.29
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.29
PRK12422	445	chromosomal replication initiation protein; Provis	98.29
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.29
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.29
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.29
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.27
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.27
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.26
PRK05642	234	DNA replication initiation factor; Validated	98.26
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.25
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.25
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.25
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.23
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.23
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.21
KOG0744|consensus	423		98.19
KOG0728|consensus	404		98.18
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.18
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.17
KOG0735|consensus	952		98.16
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.16
KOG0991|consensus	333		98.16
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.12
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.12
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.12
KOG1808|consensus	1856		98.12
KOG0651|consensus	388		98.11
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.1
PRK04132	846	replication factor C small subunit; Provisional	98.09
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.09
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.08
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.07
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.06
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.04
PF13337	457	Lon_2: Putative ATP-dependent Lon protease	97.95
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.89
PRK15455	644	PrkA family serine protein kinase; Provisional	97.88
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.88
KOG0730|consensus	693		97.88
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.87
KOG1051|consensus	898		97.85
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.84
KOG0741|consensus	744		97.79
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.72
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.71
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.71
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	97.71
KOG0729|consensus	435		97.71
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.69
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.69
PRK06526	254	transposase; Provisional	97.63
PRK08181	269	transposase; Validated	97.6
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.57
PRK12377	248	putative replication protein; Provisional	97.56
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.56
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.52
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.51
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.5
KOG1942|consensus	456		97.5
KOG0990|consensus	360		97.49
KOG0732|consensus	1080		97.46
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.43
KOG2035|consensus	351		97.37
PRK08116	268	hypothetical protein; Validated	97.36
PRK06964	342	DNA polymerase III subunit delta'; Validated	97.36
TIGR02653	675	Lon_rel_chp conserved hypothetical protein. This m	97.35
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.33
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.3
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.26
PRK09183	259	transposase/IS protein; Provisional	97.24
KOG0736|consensus	953		97.23
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.22
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.19
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.19
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.14
PRK06921	266	hypothetical protein; Provisional	97.12
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.11
PRK06835	329	DNA replication protein DnaC; Validated	96.95
PRK11823	446	DNA repair protein RadA; Provisional	96.91
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	96.84
PRK07952	244	DNA replication protein DnaC; Validated	96.81
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.81
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.78
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.77
PHA02774	613	E1; Provisional	96.74
KOG1969|consensus	877		96.61
KOG2680|consensus	454		96.57
PRK05917	290	DNA polymerase III subunit delta'; Validated	96.57
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.55
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	96.51
PHA02624	647	large T antigen; Provisional	96.27
PRK13695	174	putative NTPase; Provisional	96.25
KOG0735|consensus	952		96.19
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.07
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.02
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.01
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.01
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.97
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.95
PRK07132	299	DNA polymerase III subunit delta'; Validated	95.92
PRK14532	188	adenylate kinase; Provisional	95.92
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.86
PRK13947	171	shikimate kinase; Provisional	95.83
PF13173	128	AAA_14: AAA domain	95.71
PF13654	509	AAA_32: AAA domain; PDB: 3K1J_B.	95.71
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.64
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.6
PHA00729	226	NTP-binding motif containing protein	95.58
PRK00131	175	aroK shikimate kinase; Reviewed	95.56
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.54
PRK00625	173	shikimate kinase; Provisional	95.54
PRK03839	180	putative kinase; Provisional	95.53
KOG3347|consensus	176		95.52
PRK08118	167	topology modulation protein; Reviewed	95.52
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	95.5
PRK05818	261	DNA polymerase III subunit delta'; Validated	95.42
PRK14530	215	adenylate kinase; Provisional	95.4
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.37
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	95.35
PRK13949	169	shikimate kinase; Provisional	95.32
PRK04296	190	thymidine kinase; Provisional	95.29
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	95.18
PRK07261	171	topology modulation protein; Provisional	95.16
PF13148	378	DUF3987: Protein of unknown function (DUF3987)	95.15
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.11
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.1
PRK14531	183	adenylate kinase; Provisional	94.99
KOG1514|consensus	767		94.89
PRK06217	183	hypothetical protein; Validated	94.87
PF13245	76	AAA_19: Part of AAA domain	94.86
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.86
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.86
KOG1970|consensus	634		94.84
KOG3595|consensus	1395		94.83
PRK05057	172	aroK shikimate kinase I; Reviewed	94.81
COG4619	223	ABC-type uncharacterized transport system, ATPase	94.8
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.78
PTZ00088	229	adenylate kinase 1; Provisional	94.77
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.76
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	94.75
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.66
PRK06762	166	hypothetical protein; Provisional	94.65
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	94.61
PRK10536	262	hypothetical protein; Provisional	94.61
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.59
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	94.57
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.57
PRK14526	211	adenylate kinase; Provisional	94.57
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.56
PRK14528	186	adenylate kinase; Provisional	94.52
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.5
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.45
COG4930	683	Predicted ATP-dependent Lon-type protease [Posttra	94.38
PRK02496	184	adk adenylate kinase; Provisional	94.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.28
PLN02200	234	adenylate kinase family protein	94.27
PTZ00202	550	tuzin; Provisional	94.21
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	94.21
PF05729	166	NACHT: NACHT domain	94.19
COG4178	604	ABC-type uncharacterized transport system, permeas	94.16
COG3638	258	ABC-type phosphate/phosphonate transport system, A	94.14
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.14
PRK13948	182	shikimate kinase; Provisional	94.1
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	94.1
PRK00279	215	adk adenylate kinase; Reviewed	94.09
PRK03731	171	aroL shikimate kinase II; Reviewed	94.04
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	94.04
PRK06581	263	DNA polymerase III subunit delta'; Validated	94.01
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	93.96
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	93.96
PRK13946	184	shikimate kinase; Provisional	93.92
PHA02530	300	pseT polynucleotide kinase; Provisional	93.85
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.85
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	93.83
PF01057	271	Parvo_NS1: Parvovirus non-structural protein NS1;	93.83
PRK08233	182	hypothetical protein; Provisional	93.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	93.82
PRK07276	290	DNA polymerase III subunit delta'; Validated	93.72
PRK14527	191	adenylate kinase; Provisional	93.71
PRK08939	306	primosomal protein DnaI; Reviewed	93.68
PRK14529	223	adenylate kinase; Provisional	93.65
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	93.59
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	93.54
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	93.51
KOG2545|consensus	543		93.49
PLN02459	261	probable adenylate kinase	93.49
PLN02674	244	adenylate kinase	93.46
KOG0482|consensus	721		93.46
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	93.41
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.28
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.18
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.18
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	93.16
PRK13889	988	conjugal transfer relaxase TraA; Provisional	93.13
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.13
PRK04040	188	adenylate kinase; Provisional	93.09
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	93.06
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	92.98
KOG0064|consensus	728		92.98
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	92.96
PRK00300	205	gmk guanylate kinase; Provisional	92.93
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	92.9
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	92.89
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.87
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	92.87
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	92.87
PRK01184	184	hypothetical protein; Provisional	92.83
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	92.81
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	92.8
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	92.77
PRK13851	344	type IV secretion system protein VirB11; Provision	92.76
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	92.74
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	92.74
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.72
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	92.69
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	92.68
PRK04182	180	cytidylate kinase; Provisional	92.67
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	92.66
PRK12339	197	2-phosphoglycerate kinase; Provisional	92.65
PRK13826	1102	Dtr system oriT relaxase; Provisional	92.55
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	92.55
PF13479	213	AAA_24: AAA domain	92.47
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	92.46
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	92.44
PRK06547	172	hypothetical protein; Provisional	92.4
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	92.38
TIGR00235	207	udk uridine kinase. Model contains a number of lon	92.37
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	92.35
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	92.33
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.33
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	92.32
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	92.3
PRK05541	176	adenylylsulfate kinase; Provisional	92.28
PRK10875	615	recD exonuclease V subunit alpha; Provisional	92.28
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	92.22
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.21
PF00005	137	ABC_tran: ABC transporter This structure is on hol	92.21
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	92.2
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	92.2
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.19
PRK03846	198	adenylylsulfate kinase; Provisional	92.17
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	92.14
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	92.13
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	92.11
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.1
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	92.09
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	92.08
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.03
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	91.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	91.93
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	91.92
KOG2170|consensus	344		91.83
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	91.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	91.79
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.76
PLN02165	334	adenylate isopentenyltransferase	91.75
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	91.72
PRK08356	195	hypothetical protein; Provisional	91.7
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.68
PRK09825	176	idnK D-gluconate kinase; Provisional	91.66
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	91.66
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.65
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	91.64
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	91.64
PRK05480	209	uridine/cytidine kinase; Provisional	91.63
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	91.63
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	91.62
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	91.62
PRK08485	206	DNA polymerase III subunit delta'; Validated	91.59
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	91.58
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.58
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	91.57
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	91.56
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	91.56
cd03216	163	ABC_Carb_Monos_I This family represents the domain	91.55
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	91.55
PRK00889	175	adenylylsulfate kinase; Provisional	91.54
COG4133	209	CcmA ABC-type transport system involved in cytochr	91.53
PLN02199	303	shikimate kinase	91.51
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	91.51
PRK14737	186	gmk guanylate kinase; Provisional	91.51
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.51
smart00487	201	DEXDc DEAD-like helicases superfamily.	91.46
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	91.43
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	91.41
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	91.41
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	91.4
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	91.37
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.36
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	91.36
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	91.35
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	91.35
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.31
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	91.29
PRK13808	333	adenylate kinase; Provisional	91.29
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	91.29
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	91.29
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	91.27
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	91.23
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	91.21
PRK13546	264	teichoic acids export protein ATP-binding subunit;	91.2
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	91.19
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	91.19
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	91.16
KOG0060|consensus	659		91.14
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	91.14
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.12
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	91.12
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	91.11
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	91.1
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	91.08
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	91.08
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.05
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	91.04
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	91.04
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	91.03
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	91.03
cd03234	226	ABCG_White The White subfamily represents ABC tran	91.02
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	91.01
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	90.99
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	90.97
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	90.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	90.96
KOG0058|consensus	716		90.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	90.95

>KOG0482|consensus

Probab=100.00  E-value=1.9e-121  Score=948.93  Aligned_cols=528  Identities=65%  Similarity=1.047  Sum_probs=500.2

Q ss_pred             hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccH--HHHHHHHHcHHHHHHHHHHHHHHhcCCC
Q psy11213         87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNS--DLATNIQNNTRRYVQMFSELIFELLPDY  164 (621)
Q Consensus        87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~--~La~~i~~np~~~l~l~~~av~el~~~~  164 (621)
                      +.+++||.+|..+++.|    +|+++|+++++++..+++||++||.+|+.  +|..+|.+|..+|.++|.+++++++|.+
T Consensus        15 ~~~~~fl~e~~e~~~~~----kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~   90 (721)
T KOG0482|consen   15 NKIKKFLDEFYEDNELG----KYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEP   90 (721)
T ss_pred             HHHHHHHHhhhccCchh----HHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            44588888887654433    89999999999999999999999999985  7999999999999999999999999998


Q ss_pred             cccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEE
Q psy11213        165 KSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVV  244 (621)
Q Consensus       165 ~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV  244 (621)
                      .......+|++|+++.|+...+..  .+|. ..++.+.+|++|+++|+++|+|++..++..+|+++++|||+||+++|||
T Consensus        91 ~~~~~~~~d~lDv~~~qR~~~~~~--~~p~-~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIV  167 (721)
T KOG0482|consen   91 TGEIPYGDDVLDVYMEQRLMRNET--RDPE-LEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIV  167 (721)
T ss_pred             ccccccCccHHHHHHHHHHHhccc--cCcc-ccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEE
Confidence            865555589999999999876542  2444 4666788999999999999999999999999999999999999999999


Q ss_pred             EEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCC
Q psy11213        245 TRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVG  324 (621)
Q Consensus       245 ~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g  324 (621)
                      ||+|+|||.+.+++|.|..||+++||++++..|+|+..||+++|..++.+|.++++...|+|+.||++|+||..+++|.|
T Consensus       168 TR~S~VKP~m~VatYtCd~CGaE~yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG  247 (721)
T KOG0482|consen  168 TRVSDVKPSMVVATYTCDQCGAETYQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVG  247 (721)
T ss_pred             EeccccccceEEEEEecccccHhhhccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceeeecccccccccccCceEEEeeeeeccccCCceeeec-------------------------------------
Q psy11213        325 NIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQ-------------------------------------  367 (621)
Q Consensus       325 ~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~-------------------------------------  367 (621)
                      ++||+++|++.++++.+|.|||.|.|+||+.|....||+....                                     
T Consensus       248 ~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~~~~  327 (721)
T KOG0482|consen  248 HIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKTGELEPEELELI  327 (721)
T ss_pred             ccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhccccccccccccccHHHHHHh
Confidence            9999999999999999999999999999999988777654331                                     


Q ss_pred             ----------------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        368 ----------------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       368 ----------------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                                                                    |+|||+|+||||++||||++++.+++||++||+|
T Consensus       328 ~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG  407 (721)
T KOG0482|consen  328 AEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG  407 (721)
T ss_pred             hcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             CCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEe
Q psy11213        402 RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILA  481 (621)
Q Consensus       402 ~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viA  481 (621)
                      +|+|++||||++.+|+.+|+.++|+||||+||+|||||||||||.+.+|.+|||+||||+|||+||||.++|||||+|+|
T Consensus       408 rGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILa  487 (721)
T KOG0482|consen  408 RGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILA  487 (721)
T ss_pred             CCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        482 AANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       482 a~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ||||.+|||||..++..|++||+||||||||++++.|.||.+.|..+|+||...|+++.+++...++++++.+|.||.+|
T Consensus       488 AANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a  567 (721)
T KOG0482|consen  488 AANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA  567 (721)
T ss_pred             hcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        562 KGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       562 r~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      |+.+|.++++..++|...|++||+.++...+...+|+|.|.+++|||.|+|||++++.|+
T Consensus       568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~  627 (721)
T KOG0482|consen  568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVE  627 (721)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccc
Confidence            999999999999999999999999998777888899999999999999999999999885

>KOG0480|consensus

Probab=100.00  E-value=1.7e-105  Score=851.67  Aligned_cols=490  Identities=35%  Similarity=0.620  Sum_probs=441.6

Q ss_pred             hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhc-ccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213         87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEE-FNSDLATNIQNNTRRYVQMFSELIFELLPDYK  165 (621)
Q Consensus        87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~-fd~~La~~i~~np~~~l~l~~~av~el~~~~~  165 (621)
                      .....||++|.+.    .++++|...+..+...+..+|.||+.||.. |++.|+..|.+||+++++.+..|+..++....
T Consensus        27 e~~~~Fle~~~~~----~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d~~  102 (764)
T KOG0480|consen   27 EEFLQFLESFKVQ----AGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKDWS  102 (764)
T ss_pred             HHHHHHHHHhhcc----ccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHccc
Confidence            3457888888763    236789999999999999999999999999 99999999999999999999999998774311


Q ss_pred             ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213        166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT  245 (621)
Q Consensus       166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~  245 (621)
                      .                                    .+..+.+.|+++|.+++.  ...+|+|+++.||+||+|.|+|+
T Consensus       103 ~------------------------------------~~~~~~~~~~v~f~nlp~--~~~irdlra~~iG~Lv~isGtVv  144 (764)
T KOG0480|consen  103 T------------------------------------NSGALVKKIYVRFYNLPT--RHKIRDLRAARIGKLVRISGTVV  144 (764)
T ss_pred             c------------------------------------cccccceeEEEEEecccc--ccccccccHhhhcceEEEEEEEE
Confidence            1                                    011233578899998885  47899999999999999999999


Q ss_pred             EecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCC
Q psy11213        246 RSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGN  325 (621)
Q Consensus       246 r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~  325 (621)
                      |+|+|+|.+.+++|.|.+||..+...+++++|++|..||++.|.+.   ..|.++.+.|.|.|||+|+|||..++.|.|.
T Consensus       145 Rts~VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt~C~np~C~nr---r~f~l~~~~s~f~D~QkIrIQE~~~E~p~Gs  221 (764)
T KOG0480|consen  145 RTSPVRPELTKMTFLCEKCGTVIRNVEQQFKYTEPTKCPNPVCSNR---RSFTLDRSSSRFLDWQKIRIQELQAEIPRGS  221 (764)
T ss_pred             EeecccceeeeeEEEHhhCCCeeccchhcCccCCCccCCCccccCC---ceeeeecccceeeeeeeeehhhhhhhCCCCC
Confidence            9999999999999999999999888888899999999999988743   3588899999999999999999999999999


Q ss_pred             cccceeeecccccccccccCceEEEeeeeecccc------CC--------------ceeeec------------------
Q psy11213        326 IPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR------TG--------------FRQVTQ------------------  367 (621)
Q Consensus       326 ~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~------~~--------------~~~~~~------------------  367 (621)
                      +||+++|+|++|+|++++|||++.++|++.....      .|              +.....                  
T Consensus       222 iPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~  301 (764)
T KOG0480|consen  222 IPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQ  301 (764)
T ss_pred             CCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcc
Confidence            9999999999999999999999999999852210      00              000000                  


Q ss_pred             ---------------------------------------------------------------------------CcccE
Q psy11213        368 ---------------------------------------------------------------------------GNINI  372 (621)
Q Consensus       368 ---------------------------------------------------------------------------g~i~v  372 (621)
                                                                                                 |+|||
T Consensus       302 ~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv  381 (764)
T KOG0480|consen  302 STLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINV  381 (764)
T ss_pred             cccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceE
Confidence                                                                                       99999


Q ss_pred             EEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhh
Q psy11213        373 CLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTA  452 (621)
Q Consensus       373 LL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~  452 (621)
                      |++|||||||||+|++++..+||++|++|+.+|++|||+++++|+.+|+|+++||||++||+|||||||||||+..++.+
T Consensus       382 ~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvA  461 (764)
T KOG0480|consen  382 CIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVA  461 (764)
T ss_pred             EEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHH
Q psy11213        453 IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       453 L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~i  532 (621)
                      ||||||||+|||+|||+.++||||++|||||||..||||..+++.+|+++++||||||||+|++.|.+++..|..||+||
T Consensus       462 ihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hI  541 (764)
T KOG0480|consen  462 IHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHI  541 (764)
T ss_pred             HHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC--CCCCccCHHHHHHHHHHHHH
Q psy11213        533 TYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS--RDMSYTSARNLLAILRLSTA  610 (621)
Q Consensus       533 l~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~--~~~~~~t~R~leslirla~A  610 (621)
                      ++.|..-.........++.+.+++||.|||+..|+++.+|.+.|.+.|..||+....+  .+++++|+||||||||||||
T Consensus       542 ld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA  621 (764)
T KOG0480|consen  542 LDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEA  621 (764)
T ss_pred             HHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHH
Confidence            9998765444333458999999999999998899999999999999999999986332  34778999999999999999


Q ss_pred             HHHhcCCCCCC
Q psy11213        611 LARLRLCDEFQ  621 (621)
Q Consensus       611 ~Akl~lr~~V~  621 (621)
                      .||+++++.||
T Consensus       622 ~Ar~~~~devt  632 (764)
T KOG0480|consen  622 RARVECRDEVT  632 (764)
T ss_pred             HHhhhhhhhcc
Confidence            99999999986

>KOG0477|consensus

Probab=100.00  E-value=3.4e-102  Score=821.25  Aligned_cols=508  Identities=35%  Similarity=0.561  Sum_probs=450.1

Q ss_pred             ccccchhhhhhhhhhhhhhHHHhhhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHH
Q psy11213         63 DNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNI  142 (621)
Q Consensus        63 ~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i  142 (621)
                      +-|+++|++|+++...|.+++   ..+++||++|.++    +|+.+|.+.|++|+..|..+|.|+|.||..-.+.||..+
T Consensus       142 ~~k~~s~~e~v~~~~~r~~i~---~~fk~fl~~y~d~----~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl  214 (854)
T KOG0477|consen  142 DIKGHSYREWVSMDGVRREIA---RRFKNFLREYVDE----NGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFL  214 (854)
T ss_pred             HhhccchHHHHhccchhhHHH---HHHHHHHHHHhcc----cccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHh
Confidence            458899999999999988886   6679999999963    457789999999999999999999999999999999999


Q ss_pred             HHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCC
Q psy11213        143 QNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGK  222 (621)
Q Consensus       143 ~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~  222 (621)
                      .+.|...+++|++++.+++....                 +.+               .+++    ..+++++..++  -
T Consensus       215 ~~ap~e~l~I~dr~a~~~v~~~~-----------------p~y---------------eri~----~~ihvris~lP--~  256 (854)
T KOG0477|consen  215 PEAPEEMLEIFDRAALEVVLLHY-----------------PNY---------------ERIH----NEIHVRISDLP--V  256 (854)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhC-----------------CCh---------------hhcc----cceeeeeecCC--c
Confidence            99999999999998887652210                 000               1111    23566666665  4


Q ss_pred             CcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCCCeeeeccc-ccccCCCCCCCCccccCCCCCCceeeec
Q psy11213        223 PTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPIS-SLSFTPLLMCPSEDCQVNKSGGRLYLQT  301 (621)
Q Consensus       223 ~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~-~~~~~~~~~Cp~~~C~~~~~~~~~~~~~  301 (621)
                      ...+|.||..|+|+||.+.|+||++|.|+|.+...+|.|.+||......+. +.....|..||+  |+   |.|||..+.
T Consensus       257 ~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~evkp~~C~~--cq---SkGpf~vn~  331 (854)
T KOG0477|consen  257 CESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNSEVKPGSCPE--CQ---SKGPFEVNV  331 (854)
T ss_pred             cccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCceeCCCCCcc--cc---CCCCCccch
Confidence            578999999999999999999999999999999999999999976432222 222234567996  87   568999999


Q ss_pred             cCcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccCceEEEeeeeeccc------cCCceeeec--------
Q psy11213        302 RGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLL------RTGFRQVTQ--------  367 (621)
Q Consensus       302 ~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~------~~~~~~~~~--------  367 (621)
                      +++.|.+||+|+|||.|+.+|+|.+||+++|+|..||||.|+||+++.|+|||...+      ++||+.+..        
T Consensus       332 e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN~kngFpvfatvi~ANhV~  411 (854)
T KOG0477|consen  332 EETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLNTKNGFPVFATVIEANHVV  411 (854)
T ss_pred             hhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecccccccccccCCccccceeheehhhh
Confidence            999999999999999999999999999999999999999999999999999997543      244443221        


Q ss_pred             ---------------------------------------------------------------------CcccEEEeCCC
Q psy11213        368 ---------------------------------------------------------------------GNINICLMGDP  378 (621)
Q Consensus       368 ---------------------------------------------------------------------g~i~vLL~G~P  378 (621)
                                                                                           |+|||||+|||
T Consensus       412 ~k~~~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDP  491 (854)
T KOG0477|consen  412 KKDGKFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDP  491 (854)
T ss_pred             hhccccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCC
Confidence                                                                                 99999999999


Q ss_pred             CcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213        379 GVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       379 GtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame  458 (621)
                      ||||||+||++++.+||+++|+|.|+|++||||++.+++.+++|++|+|||||||+|||||||||||++.+|++||||||
T Consensus       492 GTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAME  571 (854)
T KOG0477|consen  492 GTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAME  571 (854)
T ss_pred             CccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhcc
Q psy11213        459 QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKH  538 (621)
Q Consensus       459 ~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~  538 (621)
                      ||.|||+||||+++|++||+||||+||.+||||++.++.+|++|.+|+|||||+++++.|..|+..|.++|++++.+|..
T Consensus       572 QQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r  651 (854)
T KOG0477|consen  572 QQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVR  651 (854)
T ss_pred             hcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCC------------CCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy11213        539 SRQPP------------TELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL  605 (621)
Q Consensus       539 ~~~~~------------~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesli  605 (621)
                      .....            .....++++.||+||.|||.+ .|+|.+...+++...|.+||+.+... .+.++|+|++|++|
T Consensus       652 ~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~t-Gs~piTvRHieS~i  730 (854)
T KOG0477|consen  652 HHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMAT-GSLPITVRHIESMI  730 (854)
T ss_pred             cCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhcccc-CCchhhHHHHHHHH
Confidence            43221            112468999999999999998 99999999999999999999998765 36779999999999


Q ss_pred             HHHHHHHHhcCCCCCC
Q psy11213        606 RLSTALARLRLCDEFQ  621 (621)
Q Consensus       606 rla~A~Akl~lr~~V~  621 (621)
                      |+++|||||+||+.|+
T Consensus       731 r~seAhArm~Lr~~V~  746 (854)
T KOG0477|consen  731 RMSEAHARMHLREYVT  746 (854)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999999985

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=100.00  E-value=8.1e-100  Score=841.78  Aligned_cols=474  Identities=42%  Similarity=0.711  Sum_probs=416.8

Q ss_pred             hhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHH
Q psy11213        106 IFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL  185 (621)
Q Consensus       106 ~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~  185 (621)
                      ...|.+++ .+......+++|++.|+..|+++||..+.++|.+++++|+++++++......                   
T Consensus        16 ~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~-------------------   75 (682)
T COG1241          16 ILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFP-------------------   75 (682)
T ss_pred             HHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCc-------------------
Confidence            34566654 3434444599999999999999999999999999999999999988743210                   


Q ss_pred             hhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCC
Q psy11213        186 EQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG  265 (621)
Q Consensus       186 e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg  265 (621)
                                      .++.. .+.|+++|.+.+.  ..++|+|+++|+||||+|+|+|+|+|.|+|++++++|.|++||
T Consensus        76 ----------------~~~~~-~~~~~~~~~~~~~--~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg  136 (682)
T COG1241          76 ----------------EVDRS-LKKIHVRFKNLPN--RLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCG  136 (682)
T ss_pred             ----------------ccccc-ccceEEEecCCcC--CcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCC
Confidence                            00000 1468899998875  4589999999999999999999999999999999999999999


Q ss_pred             CeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccC
Q psy11213        266 AETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPG  345 (621)
Q Consensus       266 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G  345 (621)
                      +.+.+.+....+.+|..|++  |. ....++|.++.+.|.|+|||+|+|||.|+.+|.|++|++++|+|++|++++++||
T Consensus       137 ~~~~~~~~~~~~~~~~~C~~--~~-~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pG  213 (682)
T COG1241         137 REVEVEQSEFRVEPPRECEN--CG-KFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPG  213 (682)
T ss_pred             CEEEEEeccccccCCccCCC--cc-ccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCC
Confidence            99998888777888889997  62 2245689999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeeeecccc-C------C--ceeee----------------c---------------------------------
Q psy11213        346 DHVSVSGIFLPLLR-T------G--FRQVT----------------Q---------------------------------  367 (621)
Q Consensus       346 ~~v~v~Gil~~~~~-~------~--~~~~~----------------~---------------------------------  367 (621)
                      |+|.|+||+..... .      +  |....                +                                 
T Consensus       214 drV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~  293 (682)
T COG1241         214 DRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDKREEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHED  293 (682)
T ss_pred             CEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccchhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHH
Confidence            99999999864321 0      0  11000                0                                 


Q ss_pred             ------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee
Q psy11213        368 ------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV  423 (621)
Q Consensus       368 ------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~  423 (621)
                                              |+|||||+||||||||||++++++.+||++|++|+++|++||||++++|+.+|+|+
T Consensus       294 VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~  373 (682)
T COG1241         294 VKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWV  373 (682)
T ss_pred             HHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEE
Confidence                                    88999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP  503 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~  503 (621)
                      +++||||+||+|||||||||||++.++++||||||||+|+|+||||+++|||||+|+|||||.+||||+++++.+|++||
T Consensus       374 LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~  453 (682)
T COG1241         374 LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLP  453 (682)
T ss_pred             EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCC-------CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHH
Q psy11213        504 AALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPT-------ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEH  575 (621)
Q Consensus       504 ~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~-------~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~  575 (621)
                      ++|||||||+|++.|.||++.|+.+|+|++..|........       ....-+.++||+||.|||++ .|.++++|.+.
T Consensus       454 ~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~  533 (682)
T COG1241         454 APLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREE  533 (682)
T ss_pred             hhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHH
Confidence            99999999999999999999999999999999965432211       00111688999999999997 89999999999


Q ss_pred             HHHHHHHHHHHhhc--CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        576 IVKAYTELRKVARN--SRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       576 l~~~y~~lR~~~~~--~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      |.++|++||+....  .....++|+||||++||||+|||||+|++.|+
T Consensus       534 l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~  581 (682)
T COG1241         534 LEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVE  581 (682)
T ss_pred             HHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCC
Confidence            99999999996421  33467899999999999999999999999986

>KOG0478|consensus

Probab=100.00  E-value=5.5e-100  Score=815.10  Aligned_cols=504  Identities=38%  Similarity=0.639  Sum_probs=451.4

Q ss_pred             eeeeccCCccceehhh--------hHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhhHHHhhhhHHHHHHhccccc
Q psy11213         29 TVSVPTLSSIFQLVIY--------FSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKID  100 (621)
Q Consensus        29 ~~~~~~~~~~~~~~~~--------~k~~~~~fl~~f~~~~~~~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl~~F~~~~  100 (621)
                      ...+++.++.+++|||        |++.|+.||.+|--                           +|.            
T Consensus       109 ~~~~~~~~~~~~~~Iwgt~v~iqe~~~~F~~fl~rf~~---------------------------~d~------------  149 (804)
T KOG0478|consen  109 IREVQEVGNEPALVIWGTNVNIQECPENFDDFLRRFRG---------------------------IDP------------  149 (804)
T ss_pred             eeeeeecCCcceEEEEeeEEEHHhhhhHHHHHHHhcCC---------------------------CCc------------
Confidence            3455666778999999        89999999999921                           111            


Q ss_pred             ccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHH
Q psy11213        101 KDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIE  180 (621)
Q Consensus       101 ~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~  180 (621)
                          ....|++.|.+|...+...+++|..||..|+.+||..+..+|.+.++.|..++++++++...              
T Consensus       150 ----~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~~~e~~~--------------  211 (804)
T KOG0478|consen  150 ----LCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEIVLERYV--------------  211 (804)
T ss_pred             ----cchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHHHHhhcc--------------
Confidence                14579999999999999999999999999999999999999999999999999998765210              


Q ss_pred             HHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEE
Q psy11213        181 HRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYT  260 (621)
Q Consensus       181 ~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~  260 (621)
                                              ..+ ..-+++++|.+..++.+||+|++++|+|||+|+|+|+|+|++.|.++++.|+
T Consensus       212 ------------------------~~~-~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFr  266 (804)
T KOG0478|consen  212 ------------------------LEI-LEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFR  266 (804)
T ss_pred             ------------------------ccc-hhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhh
Confidence                                    000 0125677888888999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeeccccccc
Q psy11213        261 CDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTR  340 (621)
Q Consensus       261 C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~  340 (621)
                      |..|++.+..++..+.+..|..|+  +|...+   .|.+.++.|.|.|.|.||+||.|+.+|.|++|+++.+.+++||||
T Consensus       267 C~vC~~~~~ve~drg~i~eP~~C~--~C~~~~---~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD  341 (804)
T KOG0478|consen  267 CSVCGHEIAVESDRGRIKEPMLCK--ECGTTN---SFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVD  341 (804)
T ss_pred             hhhcCceEEEEeecCccCCCcccc--cccCcc---cceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhh
Confidence            999999999998888899999998  498543   477889999999999999999999999999999999999999999


Q ss_pred             ccccCceEEEeeeeecccc----------CCcee---------e-----------e--------------c---------
Q psy11213        341 QVVPGDHVSVSGIFLPLLR----------TGFRQ---------V-----------T--------------Q---------  367 (621)
Q Consensus       341 ~~~~G~~v~v~Gil~~~~~----------~~~~~---------~-----------~--------------~---------  367 (621)
                      +++|||+|.||||+.+..-          +-|+.         .           .              .         
T Consensus       342 ~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~  421 (804)
T KOG0478|consen  342 KVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYE  421 (804)
T ss_pred             ccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcCccHHH
Confidence            9999999999999964321          00000         0           0              0         


Q ss_pred             ---------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcccc
Q psy11213        368 ---------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVG  408 (621)
Q Consensus       368 ---------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~g  408 (621)
                                                             |+|||||||||||||||||+++++++||++||+|+++|++|
T Consensus       422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavG  501 (804)
T KOG0478|consen  422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVG  501 (804)
T ss_pred             HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhc
Confidence                                                   77999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC
Q psy11213        409 LTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG  488 (621)
Q Consensus       409 Lta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g  488 (621)
                      ||+++.+|+.+++|+++.||||+||+|||||||||||++..|+.|||+||||+++|+|||+.++|||||+|||||||.++
T Consensus       502 LTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s  581 (804)
T KOG0478|consen  502 LTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS  581 (804)
T ss_pred             ceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCC
Q psy11213        489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPT  567 (621)
Q Consensus       489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~  567 (621)
                      +||+++++.+|++||++|||||||+|+++|.+|+..|+.|+.|++..|.... .......++...|+.||.||++. +|.
T Consensus       582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~-~~~~~~~~d~~~lr~yi~yArk~i~p~  660 (804)
T KOG0478|consen  582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETG-EKQGSEAIDMNLLRDYIRYARKNIHPA  660 (804)
T ss_pred             cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhccccc-ccchhHHHhHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999999999886544 33456678999999999999997 999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        568 VPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       568 ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +++++.+.+...|+.+|+.....+ ....|+||+|+|+|++|||||+++++.|+
T Consensus       661 l~~ea~~~l~~ayvd~rk~~~~~~-~itat~rQlesLiRlsEahak~r~s~~ve  713 (804)
T KOG0478|consen  661 LSPEASQALIQAYVDMRKIGEGAG-QITATPRQLESLIRLSEAHAKMRLSNRVE  713 (804)
T ss_pred             ccHHHHHHHHHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence            999999999999999999865442 45578999999999999999999999885

>KOG0481|consensus

Probab=100.00  E-value=2.6e-98  Score=777.27  Aligned_cols=492  Identities=36%  Similarity=0.617  Sum_probs=431.5

Q ss_pred             hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213         86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK  165 (621)
Q Consensus        86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~  165 (621)
                      +.-+++|+++|..+     ..++|+++|++.....+++|+|+++||.+||.+|+..|...|.+++++|++|+.++...+.
T Consensus        29 ~~~fkefir~f~~~-----~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i~  103 (729)
T KOG0481|consen   29 KTKFKEFIRQFRTG-----TDFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEIT  103 (729)
T ss_pred             HHHHHHHHHHhccc-----cccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhhc
Confidence            56789999999863     2489999999999999999999999999999999999999999999999999999876543


Q ss_pred             ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213        166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT  245 (621)
Q Consensus       166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~  245 (621)
                      ...                        +.+         .+...++||.+  .++.++.+||+|+++|+.|||+|.|||+
T Consensus       104 ~~~------------------------~~~---------E~~~~d~Qv~L--~sda~p~~iR~l~s~~vsklVki~GIii  148 (729)
T KOG0481|consen  104 RPR------------------------PSG---------EEVLHDIQVLL--TSDANPISIRQLKSDHVSKLVKISGIII  148 (729)
T ss_pred             CCC------------------------cCC---------CccceeeEEEE--ecCCCcccHhHhhhHhhhhheeeccEEE
Confidence            211                        100         12234566654  4667899999999999999999999999


Q ss_pred             EecccceeeeEEEEEecCCCCeeee-ccccc--ccCCCCCCC-----CccccCCCCCCceeeeccCcccchhhhhhhhcc
Q psy11213        246 RSTEVKPLMTVATYTCDMCGAETYQ-PISSL--SFTPLLMCP-----SEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEH  317 (621)
Q Consensus       246 r~s~v~p~~~~~~f~C~~Cg~~~~~-~~~~~--~~~~~~~Cp-----~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~  317 (621)
                      .+|.|+.+.+.....|..|.+.... ....+  .+.-|..|.     .+.|.    ..||.+.+++|+|+|+|.+|+||.
T Consensus       149 aAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp----~DPyii~pdks~~vD~QtLKLQE~  224 (729)
T KOG0481|consen  149 AASAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCP----LDPYIIMPDKSKCVDQQTLKLQEL  224 (729)
T ss_pred             EeeeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCC----CCCEEEcccccceeehhheehhhC
Confidence            9999999999999999999986422 22211  355677887     34565    347889999999999999999999


Q ss_pred             cCCCCCCCcccceeeecccccccccccCceEEEeeeeecccc----CC----------cee------------------e
Q psy11213        318 SDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR----TG----------FRQ------------------V  365 (621)
Q Consensus       318 ~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~----~~----------~~~------------------~  365 (621)
                      |+.+|.|++||++..++++.|++++.||.+|.|.|||.....    ++          |-.                  +
T Consensus       225 pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~f  304 (729)
T KOG0481|consen  225 PEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMF  304 (729)
T ss_pred             cccCCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccC
Confidence            999999999999999999999999999999999999853210    00          000                  0


Q ss_pred             ec--------------------------------------------------------CcccEEEeCCCCcchhHHHHHH
Q psy11213        366 TQ--------------------------------------------------------GNINICLMGDPGVAKSQLLSYI  389 (621)
Q Consensus       366 ~~--------------------------------------------------------g~i~vLL~G~PGtGKS~ll~~i  389 (621)
                      ..                                                        |+|||||.|||||+|||||+++
T Consensus       305 t~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFv  384 (729)
T KOG0481|consen  305 TPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFV  384 (729)
T ss_pred             ChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHH
Confidence            00                                                        9999999999999999999999


Q ss_pred             HhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe
Q psy11213        390 ERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI  469 (621)
Q Consensus       390 a~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi  469 (621)
                      .+.+|-++||+|+|+|++||||++.+|+.+.+|.+|+||+||||||||||||||||.+++|.+||||||||||+|+|||+
T Consensus       385 EkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGI  464 (729)
T KOG0481|consen  385 EKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI  464 (729)
T ss_pred             HhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCC--C---C
Q psy11213        470 MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQP--P---T  544 (621)
Q Consensus       470 ~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~--~---~  544 (621)
                      +++||.||+|+|||||.+||||..++..+|+++.+.+|||||+||++.|..+++.|..||+|+++.|.+....  .   .
T Consensus       465 TT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~  544 (729)
T KOG0481|consen  465 TTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEE  544 (729)
T ss_pred             eeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999863221  1   2


Q ss_pred             CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCCccCHHHHHHHHHHHHHHHHhcCC
Q psy11213        545 ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARN------SRDMSYTSARNLLAILRLSTALARLRLC  617 (621)
Q Consensus       545 ~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~------~~~~~~~t~R~leslirla~A~Akl~lr  617 (621)
                      ....++.+.||+||.|||.. .|.||++|.+.|...|+.+|+....      .....|+|+||||++||++|++|||+|+
T Consensus       545 ~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls  624 (729)
T KOG0481|consen  545 NEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELS  624 (729)
T ss_pred             CCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCC
Confidence            45679999999999999988 9999999999999999999986432      2346789999999999999999999999


Q ss_pred             CCCC
Q psy11213        618 DEFQ  621 (621)
Q Consensus       618 ~~V~  621 (621)
                      ..+|
T Consensus       625 ~~at  628 (729)
T KOG0481|consen  625 PFAT  628 (729)
T ss_pred             cccc
Confidence            8764

>KOG0479|consensus

Probab=100.00  E-value=8.4e-97  Score=775.40  Aligned_cols=476  Identities=37%  Similarity=0.575  Sum_probs=419.8

Q ss_pred             hhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHH
Q psy11213        106 IFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL  185 (621)
Q Consensus       106 ~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~  185 (621)
                      ...|++.|.+|.+.+...|.|+++||..|++++|..|+.||.++++.|++|+.++....+.          .+.      
T Consensus        27 ~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~----------~~~------   90 (818)
T KOG0479|consen   27 ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRIDD----------VYA------   90 (818)
T ss_pred             hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcccc----------hhh------
Confidence            4589999999999999999999999999999999999999999999999999988754320          110      


Q ss_pred             hhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCC
Q psy11213        186 EQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG  265 (621)
Q Consensus       186 e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg  265 (621)
                                          .....|.|.|.+.++.+.+++|.|.+.|+|++|+++||||+||-|+|++.+.++.|+..+
T Consensus        91 --------------------~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~  150 (818)
T KOG0479|consen   91 --------------------KVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATN  150 (818)
T ss_pred             --------------------hhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccC
Confidence                                012358899999999999999999999999999999999999999999999999999998


Q ss_pred             Ceeeeccccc----ccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeecccccccc
Q psy11213        266 AETYQPISSL----SFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQ  341 (621)
Q Consensus       266 ~~~~~~~~~~----~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~  341 (621)
                      ...+......    .+......|.+.    ..++++......|.|.|+|.|.|||+||..|+|++||+++|++.+||||+
T Consensus       151 ~~~~r~Y~D~T~~~~~p~~svYPT~D----e~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~  226 (818)
T KOG0479|consen  151 KFHERDYRDATMLTTLPTGSVYPTRD----EDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDR  226 (818)
T ss_pred             cchhhhhcchheecccccCCcCCccC----CCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEeccccccc
Confidence            7654433221    111112345322    23567888999999999999999999999999999999999999999999


Q ss_pred             cccCceEEEeeeeecccc--C-----Cceeeec-----------------------------------------------
Q psy11213        342 VVPGDHVSVSGIFLPLLR--T-----GFRQVTQ-----------------------------------------------  367 (621)
Q Consensus       342 ~~~G~~v~v~Gil~~~~~--~-----~~~~~~~-----------------------------------------------  367 (621)
                      |+|||+|.|.|+|.++-.  +     .|+...-                                               
T Consensus       227 ~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH  306 (818)
T KOG0479|consen  227 VKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGH  306 (818)
T ss_pred             CCCCCeeEEEEEEeeccCccCCcccceeEEEEEeccHHhhcccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccH
Confidence            999999999999976532  2     2332110                                               


Q ss_pred             --------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc
Q psy11213        368 --------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE  421 (621)
Q Consensus       368 --------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~  421 (621)
                                                |+|||||+|||.|+||||||++.+.+|+++-|+|.|+|++||||++..|+.+|+
T Consensus       307 ~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGE  386 (818)
T KOG0479|consen  307 DYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGE  386 (818)
T ss_pred             HHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccch
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccC
Q psy11213        422 MVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQ  501 (621)
Q Consensus       422 ~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~  501 (621)
                      ..+|+||+||||+||+||||||||++-+|.+|||+||||+++|+||||.++|||||+|||||||.+|+||.+++..+|+.
T Consensus       387 RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIg  466 (818)
T KOG0479|consen  387 RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIG  466 (818)
T ss_pred             hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCC--------C------------------------------
Q psy11213        502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQP--------P------------------------------  543 (621)
Q Consensus       502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~--------~------------------------------  543 (621)
                      ||.+|||||||+|++.|..|.+.|+.|+.|+++.|......        .                              
T Consensus       467 LpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg  546 (818)
T KOG0479|consen  467 LPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHG  546 (818)
T ss_pred             CcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhc
Confidence            99999999999999999999999999999999998542110        0                              


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhc--CCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213        544 ----TELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARN--SRDMSYTSARNLLAILRLSTALARLRL  616 (621)
Q Consensus       544 ----~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~--~~~~~~~t~R~leslirla~A~Akl~l  616 (621)
                          ...+.++.+++|+||.|||+. .|+|++++.++|.+.|..||+....  .....++|+|+||.|||||.||||+++
T Consensus       547 ~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRl  626 (818)
T KOG0479|consen  547 KAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARL  626 (818)
T ss_pred             cccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence                113457899999999999996 9999999999999999999987432  234678999999999999999999999


Q ss_pred             CCCCC
Q psy11213        617 CDEFQ  621 (621)
Q Consensus       617 r~~V~  621 (621)
                      ++.|+
T Consensus       627 Sk~V~  631 (818)
T KOG0479|consen  627 SKVVE  631 (818)
T ss_pred             cceee
Confidence            99986

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=100.00  E-value=8.6e-92  Score=792.92  Aligned_cols=498  Identities=28%  Similarity=0.445  Sum_probs=418.9

Q ss_pred             hhHHHHHHhcccc-------cccC----cchhchHHHHHHHHHcC----------CcEEEEechhhhcccHHHHHHHHHc
Q psy11213         87 DLDDEFLIEFVKI-------DKDD----NKIFKYSKQLSKLAHRE----------QVAIYIDLDDVEEFNSDLATNIQNN  145 (621)
Q Consensus        87 ~~~~~Fl~~F~~~-------~~~~----~~~~~Y~~~i~~~~~~~----------~~~l~Vd~~dL~~fd~~La~~i~~n  145 (621)
                      +.+-+||++|.+.       +++-    .....|..+|.+|+..+          .++|+||++||..|++.||++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~~~l~~~  169 (915)
T PTZ00111         90 ERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLYKLLVTF  169 (915)
T ss_pred             HHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHHHHHHHC
Confidence            5667777777441       1111    13567999999999876          3799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcc
Q psy11213        146 TRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTP  225 (621)
Q Consensus       146 p~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~  225 (621)
                      |.+++++|++++.+++..+...             +.          +.      ..+..+ ...++|++.+.+  ...+
T Consensus       170 P~e~i~~~e~~l~~~~~~~~~~-------------~~----------~~------~~~~~~-~~~~~vr~~n~~--~~~~  217 (915)
T PTZ00111        170 PADCIAELDKVLVKLFNELLSK-------------HY----------SD------LSLENN-SFFPRARLMNKP--VSDC  217 (915)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-------------cc----------cc------chhccc-cceEEEEEeCCC--CCCC
Confidence            9999999999998875431100             00          00      000000 012467776654  5689


Q ss_pred             cccccccCCCcEEEEEEEEEEecccceeeeEEEEEecC-----------CCCeeeecccccccCCCCCCCCccccCCCCC
Q psy11213        226 IREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDM-----------CGAETYQPISSLSFTPLLMCPSEDCQVNKSG  294 (621)
Q Consensus       226 ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~-----------Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~  294 (621)
                      +|+|++.++||||+|+|+|+|+|.|+|++..++|+|..           ||+..+..+..+.+.+|..||+  |++   .
T Consensus       218 iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~~--C~~---~  292 (915)
T PTZ00111        218 VGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCNE--CNS---K  292 (915)
T ss_pred             cccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcccCCCCCCC--CCC---C
Confidence            99999999999999999999999999999999999986           7766555556678888889985  873   4


Q ss_pred             CceeeeccCcccchhhhhhhhcccCCCCCCCcc--------------------cceeeecccccccccccCceEEEeeee
Q psy11213        295 GRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIP--------------------RGITVLCRGENTRQVVPGDHVSVSGIF  354 (621)
Q Consensus       295 ~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p--------------------~~i~v~l~~~lv~~~~~G~~v~v~Gil  354 (621)
                      ++|.++++.|.|+|||+|+|||+|+.+|+|++|                    |+++|+|++||||.|+|||+|.|+||+
T Consensus       293 ~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl  372 (915)
T PTZ00111        293 YTFELNHNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGIL  372 (915)
T ss_pred             CCeEEccCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEE
Confidence            689999999999999999999999999999999                    999999999999999999999999999


Q ss_pred             ecccc----------CCc---------ee---------------------eec---------------------------
Q psy11213        355 LPLLR----------TGF---------RQ---------------------VTQ---------------------------  367 (621)
Q Consensus       355 ~~~~~----------~~~---------~~---------------------~~~---------------------------  367 (621)
                      .+...          ..|         ..                     +..                           
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I  452 (915)
T PTZ00111        373 KVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSI  452 (915)
T ss_pred             EeccccccccccccccccceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeE
Confidence            74320          000         00                     000                           


Q ss_pred             --------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccc
Q psy11213        368 --------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGL  409 (621)
Q Consensus       368 --------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gL  409 (621)
                                                            |++||||+|+||||||++|+++++++||.+|++|.+++.+|+
T Consensus       453 ~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgL  532 (915)
T PTZ00111        453 KARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGL  532 (915)
T ss_pred             ECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccc
Confidence                                                  135999999999999999999999999999999999999999


Q ss_pred             eEEEe-ecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC
Q psy11213        410 TAAVM-KDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG  488 (621)
Q Consensus       410 ta~~~-~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g  488 (621)
                      ++.+. .+..+|+|.+++|++++|++|+||||||++|++.+|.+||++||||+++|+|+|+.++++++|+||||+||.+|
T Consensus       533 Ta~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~g  612 (915)
T PTZ00111        533 TASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINS  612 (915)
T ss_pred             cchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCccc
Confidence            99876 55568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC----C--------------------CCC
Q psy11213        489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR----Q--------------------PPT  544 (621)
Q Consensus       489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~----~--------------------~~~  544 (621)
                      +||+++++.+|++||++|||||||+|++.|.|+++.|+.||+||++.|....    .                    ...
T Consensus       613 ryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (915)
T PTZ00111        613 RYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEK  692 (915)
T ss_pred             ccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcccccccccccccccc
Confidence            9999999999999999999999999999999999999999999998763210    0                    000


Q ss_pred             CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhh-----------------------cCCCCCccCHHH
Q psy11213        545 ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVAR-----------------------NSRDMSYTSARN  600 (621)
Q Consensus       545 ~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~-----------------------~~~~~~~~t~R~  600 (621)
                      ....++.++||+||.|||++ +|.|+++|.+.|.++|++||+...                       .+....++|+||
T Consensus       693 ~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~Rq  772 (915)
T PTZ00111        693 DYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRM  772 (915)
T ss_pred             ccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHH
Confidence            12347999999999999987 999999999999999999998421                       112346799999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy11213        601 LLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       601 leslirla~A~Akl~lr~~V~  621 (621)
                      ||+|||||||||||+|++.||
T Consensus       773 LEsLIRLsEA~AK~rLs~~Vt  793 (915)
T PTZ00111        773 ISSIIRISVSLARMRLSTVVT  793 (915)
T ss_pred             HHHHHHHHHHHhhhcCcCccc
Confidence            999999999999999999996

>smart00350 MCM minichromosome maintenance proteins

Probab=100.00  E-value=7.1e-80  Score=684.12  Aligned_cols=396  Identities=49%  Similarity=0.814  Sum_probs=358.4

Q ss_pred             CcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeecc
Q psy11213        223 PTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTR  302 (621)
Q Consensus       223 ~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~  302 (621)
                      +.++|+|++.++||||+|+|+|+|+|.|+|++.+++|+|.+||+.+++.+.++.+.+|..||+..|++   .++|.++.+
T Consensus         2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~---~~~f~l~~~   78 (509)
T smart00350        2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQS---PTPFSLNHE   78 (509)
T ss_pred             CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCC---CCceEeccC
Confidence            46799999999999999999999999999999999999999999988887778889999999877884   346889999


Q ss_pred             CcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccCceEEEeeeeeccc-------cCCc---ee--------
Q psy11213        303 GSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLL-------RTGF---RQ--------  364 (621)
Q Consensus       303 ~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~-------~~~~---~~--------  364 (621)
                      .|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|.|+||+.+..       .+++   ..        
T Consensus        79 ~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~  158 (509)
T smart00350       79 RSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVR  158 (509)
T ss_pred             CCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEE
Confidence            99999999999999999999999999999999999999999999999999997531       0010   00        


Q ss_pred             -----------------eec--------------------------------------------------------Cccc
Q psy11213        365 -----------------VTQ--------------------------------------------------------GNIN  371 (621)
Q Consensus       365 -----------------~~~--------------------------------------------------------g~i~  371 (621)
                                       +..                                                        |++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~  238 (509)
T smart00350      159 KLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDIN  238 (509)
T ss_pred             EccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccce
Confidence                             000                                                        3569


Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRT  451 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~  451 (621)
                      |||+|+||||||++|+++++++||..|++|.+++.+||+++..+++.+|+|.+++|++++|++|+||||||++|+++.+.
T Consensus       239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~  318 (509)
T smart00350      239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT  318 (509)
T ss_pred             EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             hhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHH
Q psy11213        452 AIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQH  531 (621)
Q Consensus       452 ~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~  531 (621)
                      +||++||+|++++.|+|+.+++|++|+||||+||.+|+||+.+++.+|++||+++||||||+|++.|.|+.++|.+|++|
T Consensus       319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~  398 (509)
T smart00350      319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH  398 (509)
T ss_pred             HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCC--CCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCccCHHHHHHHHH
Q psy11213        532 ITYVHKHSRQ--PPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSR--DMSYTSARNLLAILR  606 (621)
Q Consensus       532 il~~~~~~~~--~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~--~~~~~t~R~leslir  606 (621)
                      +++.|.....  .......++.+.|++||.|||++ .|.+|+++.++|.++|.++|+......  ...++|+|++++|+|
T Consensus       399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliR  478 (509)
T smart00350      399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIR  478 (509)
T ss_pred             HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHH
Confidence            9988754321  11223579999999999999995 999999999999999999998654321  246799999999999


Q ss_pred             HHHHHHHhcCCCCCC
Q psy11213        607 LSTALARLRLCDEFQ  621 (621)
Q Consensus       607 la~A~Akl~lr~~V~  621 (621)
                      +|+|+|||++|+.|+
T Consensus       479 la~A~A~l~~r~~V~  493 (509)
T smart00350      479 LSEAHAKMRLSDVVE  493 (509)
T ss_pred             HHHHHHHHcCCCccC
Confidence            999999999999986

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=100.00  E-value=9.5e-61  Score=503.81  Aligned_cols=277  Identities=51%  Similarity=0.825  Sum_probs=218.0

Q ss_pred             CceEEEeeeeeccccCCcee-----eecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQ-----VTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPIT  419 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~-----~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~  419 (621)
                      |.+..-.||+..+..+.-..     ...|++||||+||||||||+|++++++++||++|++|.+++++|||+++.+++.+
T Consensus        28 g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~  107 (331)
T PF00493_consen   28 GHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVT  107 (331)
T ss_dssp             T-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGT
T ss_pred             CcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecccccc
Confidence            55555567776665432211     1238999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc
Q psy11213        420 NEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN  499 (621)
Q Consensus       420 g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~  499 (621)
                      |+|++++|++++||+|||||||||+|.++++.+||||||||+++|+|+|+.+++|+||+|+||+||.+|+||+++++.+|
T Consensus       108 ~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n  187 (331)
T PF00493_consen  108 GEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN  187 (331)
T ss_dssp             SSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred             ceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC---CCCCC--CCCCCHHHHHHHHHHHHcC-CCCCCHHHH
Q psy11213        500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR---QPPTE--LKPIDMSLVRRYIDLCKGK-NPTVPSSLT  573 (621)
Q Consensus       500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~---~~~~~--~~~i~~~~lr~~i~~ar~~-~p~ls~~a~  573 (621)
                      ++++++|+|||||+|++.|.++++.|..+++|+++.|....   .....  ...++.++||+||.|||+. .|.+++++.
T Consensus       188 i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~  267 (331)
T PF00493_consen  188 INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAK  267 (331)
T ss_dssp             T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCH
T ss_pred             cccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHH
Confidence            99999999999999999999999999999999999887653   11111  2589999999999999955 999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ++|.++|+++|+.........++|+|+||+|||||+|||||+||+.|+
T Consensus       268 ~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~  315 (331)
T PF00493_consen  268 ELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVT  315 (331)
T ss_dssp             HHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECS
T ss_pred             HHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCcee
Confidence            999999999999874234567799999999999999999999999986

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.93  E-value=1.4e-24  Score=227.57  Aligned_cols=247  Identities=19%  Similarity=0.218  Sum_probs=179.9

Q ss_pred             cCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecC----------------------
Q psy11213        344 PGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTG----------------------  401 (621)
Q Consensus       344 ~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g----------------------  401 (621)
                      .|++..+..++.+.+..       |..|+||.|+||||||+++|.+++++|......|                      
T Consensus        11 ~Gq~~~~~~l~~~~~~~-------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   83 (334)
T PRK13407         11 VGQEEMKQAMVLTAIDP-------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM   83 (334)
T ss_pred             CCHHHHHHHHHHHHhcc-------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence            36655555554433311       1239999999999999999999999975221111                      


Q ss_pred             -----------CCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCC
Q psy11213        402 -----------RGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG  468 (621)
Q Consensus       402 -----------~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~g  468 (621)
                                 .+.+...|+|+...+..  +|++.+++|.+..|++|+++|||++.++++.++.|+++|+++.+++.+.|
T Consensus        84 ~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G  163 (334)
T PRK13407         84 IERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREG  163 (334)
T ss_pred             cccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECC
Confidence                       11222335655555443  68999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCC---CCCC
Q psy11213        469 IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQ---PPTE  545 (621)
Q Consensus       469 i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~---~~~~  545 (621)
                      ....+++++.++||+||.+|            .++++|++||.+.+.+....+.+++.++.++..........   ....
T Consensus       164 ~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~  231 (334)
T PRK13407        164 LSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGA  231 (334)
T ss_pred             eEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccc
Confidence            99999999999999999754            48999999998766665555547777777764321100000   0001


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        546 LKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       546 ~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ......+.+....+.++  .+.+++++.+++.+.....|..          ++|....++|.|+|+|.+++|+.|+
T Consensus       232 ~~~~~~~~i~~a~~~~~--~V~v~~~~~~yi~~l~~~~~~~----------s~Ra~i~l~~aA~a~A~l~Gr~~V~  295 (334)
T PRK13407        232 EDMQLRGRILGARARLP--QLKTPNTVLHDCAALCIALGSD----------GLRGELTLLRAARALAAFEGAEAVG  295 (334)
T ss_pred             cccCCHHHHHHHHHhcC--CcccCHHHHHHHHHHHHHHCCC----------CchHHHHHHHHHHHHHHHcCCCeeC
Confidence            22333344443333222  6889999999999987666532          6899999999999999999999986

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.92  E-value=9.9e-25  Score=229.17  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=182.5

Q ss_pred             ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccE------Eec----------------
Q psy11213        343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQ------YTT----------------  400 (621)
Q Consensus       343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~------~~~----------------  400 (621)
                      .+||+-.+..++.+++..+       .-|+||.|+||+|||+|++.++.++|...      +.+                
T Consensus         6 ivgq~~~~~al~~~~~~~~-------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   78 (337)
T TIGR02030         6 IVGQDEMKLALLLNVIDPK-------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRV   78 (337)
T ss_pred             cccHHHHHHHHHHHhcCCC-------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhh
Confidence            3466655555555555421       12999999999999999999999886421      000                


Q ss_pred             ------------------CCCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213        401 ------------------GRGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQ  460 (621)
Q Consensus       401 ------------------g~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q  460 (621)
                                        -.+.+...|+++...+..  +|++++++|.+..|++|++||||++.+++..++.|+++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g  158 (337)
T TIGR02030        79 DSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG  158 (337)
T ss_pred             hcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence                              001122245665544443  799999999999999999999999999999999999999999


Q ss_pred             EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC
Q psy11213        461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR  540 (621)
Q Consensus       461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~  540 (621)
                      .+.+.+.|....+++++.++||+||.+|            .|+++|++||.+.+.+....+.+++.+|.+.......   
T Consensus       159 ~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~---  223 (337)
T TIGR02030       159 WNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDA---  223 (337)
T ss_pred             CeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhccc---
Confidence            8888889999999999999999999865            4899999999866555544444666777765432110   


Q ss_pred             CCCCCC--CCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213        541 QPPTEL--KPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRL  616 (621)
Q Consensus       541 ~~~~~~--~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~l  616 (621)
                      .+....  -......+.+-|..+++.  .+.+++++.+++.+....+|.          -|+|....++|.|+|+|.+++
T Consensus       224 ~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~----------~s~Ra~i~l~raArA~Aal~G  293 (337)
T TIGR02030       224 DPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV----------DGLRGELTLNRAAKALAAFEG  293 (337)
T ss_pred             CchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC----------CCCcHHHHHHHHHHHHHHHcC
Confidence            000000  011133456677777765  788999999999998876551          168999999999999999999


Q ss_pred             CCCCC
Q psy11213        617 CDEFQ  621 (621)
Q Consensus       617 r~~V~  621 (621)
                      |+.|+
T Consensus       294 R~~V~  298 (337)
T TIGR02030       294 RTEVT  298 (337)
T ss_pred             CCCCC
Confidence            99986

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.92  E-value=2.4e-24  Score=242.77  Aligned_cols=224  Identities=18%  Similarity=0.234  Sum_probs=183.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-Ee-cCCCCccccceEEEeec--CcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-YT-TGRGSSGVGLTAAVMKD--PITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~-~g~~~s~~gLta~~~~~--~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      ||||.|+||||||++++++++.+|+.. |. ...+.+...|.+.....  ..+|.|.+++|.|..|++|++||||+++++
T Consensus        18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~   97 (589)
T TIGR02031        18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD   97 (589)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence            999999999999999999999988742 22 22223334455543211  236788999999999999999999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL  526 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~  526 (621)
                      +..++.|+++|+++.+++.+.|....++++|.||||+||..+          ...|+++|++||++.+.+.+.++.++..
T Consensus        98 ~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~----------~g~L~~~LldRf~l~v~~~~~~~~~er~  167 (589)
T TIGR02031        98 DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG----------GGGLPDHLLDRLALHVSLEDVASQDLRV  167 (589)
T ss_pred             HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----------cCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence            999999999999999999999999999999999999999841          1269999999999988888888888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHH
Q psy11213        527 KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAI  604 (621)
Q Consensus       527 ~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesl  604 (621)
                      +|+++.+....       .........+++.|..||+.  .+.+++++.++|.+.+..++-          -++|....+
T Consensus       168 eil~~~~~~~~-------~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv----------~s~Ra~i~~  230 (589)
T TIGR02031       168 EIVRRERCNEV-------FRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI----------SGHRADLFA  230 (589)
T ss_pred             HHHHHHHHhhh-------hhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC----------CCccHHHHH
Confidence            88888753211       11223567889999999976  678999999999998865421          258999999


Q ss_pred             HHHHHHHHHhcCCCCCC
Q psy11213        605 LRLSTALARLRLCDEFQ  621 (621)
Q Consensus       605 irla~A~Akl~lr~~V~  621 (621)
                      +|+|+|+|.|++|+.|+
T Consensus       231 ~r~ArA~Aal~gr~~V~  247 (589)
T TIGR02031       231 VRAAKAHAALHGRTEVT  247 (589)
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999999986

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.91  E-value=3.9e-24  Score=243.67  Aligned_cols=226  Identities=19%  Similarity=0.236  Sum_probs=177.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-----------------------------------cCCCCccccceEEEee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----------------------------------TGRGSSGVGLTAAVMK  415 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----------------------------------~g~~~s~~gLta~~~~  415 (621)
                      +|||.|+||||||++++++++++|.....                                   ...+.+...|.++...
T Consensus        27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~  106 (633)
T TIGR02442        27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI  106 (633)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH
Confidence            89999999999999999999999732111                                   1112222234443322


Q ss_pred             cC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC
Q psy11213        416 DP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK  493 (621)
Q Consensus       416 ~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~  493 (621)
                      ..  .+|.+.+++|.|..|++||+||||+++++++.++.|+++|+++.+.+.+.|....+++++.+|||+||.+|     
T Consensus       107 ~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-----  181 (633)
T TIGR02442       107 ERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-----  181 (633)
T ss_pred             HHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-----
Confidence            11  25778899999999999999999999999999999999999999999999999999999999999999765     


Q ss_pred             CCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCC--CHHHHHHHHHHHHcC--CCCCC
Q psy11213        494 RSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPI--DMSLVRRYIDLCKGK--NPTVP  569 (621)
Q Consensus       494 ~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i--~~~~lr~~i~~ar~~--~p~ls  569 (621)
                             .|+++|++||++.+.+.+..+.+.+.+++++.+.....   +......+  ....+++.|..|+..  .+.++
T Consensus       182 -------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is  251 (633)
T TIGR02442       182 -------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD---PEAFAARWAAEQEELRNRIARARSLLPSVRIS  251 (633)
T ss_pred             -------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC---cHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence                   48999999999888877777777788888776542211   10000111  234778889999877  57889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        570 SSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       570 ~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +++.++|.+.+..++-          -++|....++|+|+|+|.|++|+.|+
T Consensus       252 ~~~~~~l~~~~~~~~i----------~s~Ra~i~~~r~Ara~AaL~gr~~V~  293 (633)
T TIGR02442       252 DSLIRFISELCIEFGV----------DGHRADIVMARAARALAALDGRRRVT  293 (633)
T ss_pred             HHHHHHHHHHHHHhCC----------CCccHHHHHHHHHHHHHHHcCCCcCC
Confidence            9999999999877631          15899999999999999999999986

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR00368 Mg chelatase-related protein

Probab=99.91  E-value=8.9e-24  Score=232.61  Aligned_cols=235  Identities=23%  Similarity=0.296  Sum_probs=164.5

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEE-------Eeec---------Ccccceeeecc
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAA-------VMKD---------PITNEMVLEGG  427 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~-------~~~~---------~~~g~~~l~~G  427 (621)
                      |+.|++|+|+||+|||++++.++.++|...    +......+.+|+...       ..+.         ...|.+...+|
T Consensus       210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG  289 (499)
T TIGR00368       210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG  289 (499)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence            456999999999999999999999877532    111122222222110       0000         01345668899


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCC-C----Ccc----
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPK-R----SIE----  497 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~-~----~~~----  497 (621)
                      .+.+|++|+|||||++++++..+..|+++||++.+.|.++|....+++++.+|||+||+ +|+|+.. .    +..    
T Consensus       290 ~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~  369 (499)
T TIGR00368       290 EISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR  369 (499)
T ss_pred             hhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997 7888642 1    111    


Q ss_pred             cccCCCHhHhccccEEEEecCCCChH--------HHHHHHHHHHhhhccC--C-CCC---CCCCCCCHHHHHHHHHHHHc
Q psy11213        498 QNIQLPAALLSRFDLLWLIQDKPDRD--------NDLKLAQHITYVHKHS--R-QPP---TELKPIDMSLVRRYIDLCKG  563 (621)
Q Consensus       498 ~~~~L~~aLlsRFDli~~~~d~~d~~--------~d~~ia~~il~~~~~~--~-~~~---~~~~~i~~~~lr~~i~~ar~  563 (621)
                      ....++.||+|||||++.+.+....+        ....+.+++...+...  + ...   .....++...|++|+     
T Consensus       370 y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~-----  444 (499)
T TIGR00368       370 YWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFC-----  444 (499)
T ss_pred             HhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhc-----
Confidence            12379999999999999887654321        2233444443221100  0 000   113445566665542     


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        564 KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       564 ~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                         .+++++.+.+.+.|..+           .+|.|....++|+|+++|.|++++.|+
T Consensus       445 ---~l~~~~~~~l~~a~~~~-----------~lS~R~~~rilrvArTiAdL~g~~~i~  488 (499)
T TIGR00368       445 ---KLSAIDANDLEGALNKL-----------GLSSRATHRILKVARTIADLKEEKNIS  488 (499)
T ss_pred             ---CCCHHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHHhhcCCCCCC
Confidence               35667777766655332           268999999999999999999999885

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.90  E-value=1e-23  Score=231.12  Aligned_cols=234  Identities=23%  Similarity=0.327  Sum_probs=159.9

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEE----e-------cCCCCccccceEEEeecC---------cccceeeecc
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQY----T-------TGRGSSGVGLTAAVMKDP---------ITNEMVLEGG  427 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~-------~g~~~s~~gLta~~~~~~---------~~g~~~l~~G  427 (621)
                      |+.|++|+|+||+|||+|++.++.++|....    .       .|......+++....+.+         ..|.+..++|
T Consensus       209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG  288 (506)
T PRK09862        209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG  288 (506)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence            4469999999999999999999998775321    0       111111111111111111         1356778999


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCC---Cccc----c
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKR---SIEQ----N  499 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~---~~~~----~  499 (621)
                      .+.+||+|++||||++.+++..+..|+++||++.++|.+.|...++|++|.+|||+||. +|.|+...   +...    .
T Consensus       289 ~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~  368 (506)
T PRK09862        289 EISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYL  368 (506)
T ss_pred             HhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997 78886422   1111    1


Q ss_pred             cCCCHhHhccccEEEEecCCCCh---------HHHHHHHHHHHhhhcc--CCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213        500 IQLPAALLSRFDLLWLIQDKPDR---------DNDLKLAQHITYVHKH--SRQPPTELKPIDMSLVRRYIDLCKGKNPTV  568 (621)
Q Consensus       500 ~~L~~aLlsRFDli~~~~d~~d~---------~~d~~ia~~il~~~~~--~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l  568 (621)
                      -.|+.++||||||.+.+...+..         +....+.+.+......  .+. ......++.+.+++|+        .+
T Consensus       369 ~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~-~~~n~~l~~~~l~~~~--------~l  439 (506)
T PRK09862        369 NRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFC--------KL  439 (506)
T ss_pred             hhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHH-HHHhcccCHHHHHHHh--------CC
Confidence            36999999999987777544211         1122233333221100  000 0012233344444432        35


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       569 s~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ++++.+.+...|..+           .+|.|....++|+|+++|.|++++.|+
T Consensus       440 ~~~~~~~l~~~~~~~-----------~lS~Ra~~rlLrvARTiADL~g~~~V~  481 (506)
T PRK09862        440 ESEDARWLEETLIHL-----------GLSIRAWQRLLKVARTIADIDQSDIIT  481 (506)
T ss_pred             CHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            666666666655322           268999999999999999999999985

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.90  E-value=2.8e-23  Score=218.04  Aligned_cols=246  Identities=20%  Similarity=0.243  Sum_probs=176.4

Q ss_pred             ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC--------------------
Q psy11213        343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR--------------------  402 (621)
Q Consensus       343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~--------------------  402 (621)
                      .+||+.....++......+       -.++||.|++|||||+++|.+++++|......+.                    
T Consensus        19 ivGq~~~k~al~~~~~~p~-------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~   91 (350)
T CHL00081         19 IVGQEEMKLALILNVIDPK-------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAI   91 (350)
T ss_pred             HhChHHHHHHHHHhccCCC-------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhh
Confidence            3466544444444443322       1289999999999999999999998753311110                    


Q ss_pred             --------------------CCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213        403 --------------------GSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQ  460 (621)
Q Consensus       403 --------------------~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q  460 (621)
                                          +.+...|.|+.....  ..|.+.+++|.+..|++|+++|||++++++..|+.|+++|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~  171 (350)
T CHL00081         92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG  171 (350)
T ss_pred             cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence                                111111222211111  2567788999999999999999999999999999999999999


Q ss_pred             EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC
Q psy11213        461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR  540 (621)
Q Consensus       461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~  540 (621)
                      .+++.+.|....+++++.++||.||.+|            .|+++|++||.+.+.+....+.+.+.+|.++.........
T Consensus       172 ~~~ier~G~s~~~p~rfiviaT~np~eg------------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~  239 (350)
T CHL00081        172 WNTVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQ  239 (350)
T ss_pred             CeEEeeCCeeeecCCCEEEEeccCcccC------------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChh
Confidence            9999999999999999999999999865            4899999999866666555556888888877532110000


Q ss_pred             C---CCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhc
Q psy11213        541 Q---PPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLR  615 (621)
Q Consensus       541 ~---~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~  615 (621)
                      .   ..........    .-|..||+.  .+.+++++.++|.+....+|.          -|+|....++|.|+|+|.|+
T Consensus       240 ~~~~~~~~~~~~~~----~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~----------~s~Ra~i~l~raArA~Aal~  305 (350)
T CHL00081        240 EFREKYEESQEELR----SKIVAAQNLLPKVEIDYDLRVKISQICSELDV----------DGLRGDIVTNRAAKALAAFE  305 (350)
T ss_pred             hhhhhhccccccCH----HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC----------CCChHHHHHHHHHHHHHHHc
Confidence            0   0001122233    344444443  689999999999998777653          27999999999999999999


Q ss_pred             CCCCCC
Q psy11213        616 LCDEFQ  621 (621)
Q Consensus       616 lr~~V~  621 (621)
                      +|+.|+
T Consensus       306 GR~~V~  311 (350)
T CHL00081        306 GRTEVT  311 (350)
T ss_pred             CCCCCC
Confidence            999986

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.88  E-value=3.4e-22  Score=215.33  Aligned_cols=249  Identities=19%  Similarity=0.176  Sum_probs=184.4

Q ss_pred             ccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEE-e
Q psy11213        339 TRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAV-M  414 (621)
Q Consensus       339 v~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~-~  414 (621)
                      +.+...|++..|..++.++..++         ||||.|+||||||++++++++.+.+.   .+....-++...+++.. .
T Consensus        18 l~~~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i   88 (498)
T PRK13531         18 LEKGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI   88 (498)
T ss_pred             HhhhccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH
Confidence            45566788888888888888888         99999999999999999999987642   11111111223466643 2


Q ss_pred             ec-Cccccee-eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC
Q psy11213        415 KD-PITNEMV-LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP  492 (621)
Q Consensus       415 ~~-~~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~  492 (621)
                      +. ...|.+. ..+|.+..|+  ++|+|||++++++.+++|+++|+++.+++  +|....+|.++.++|+ ||...    
T Consensus        89 ~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE----  159 (498)
T PRK13531         89 QALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTAS-NELPE----  159 (498)
T ss_pred             hhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc----
Confidence            22 2256664 6788877665  99999999999999999999999999998  7889999999888888 87521    


Q ss_pred             CCCcccccCCCHhHhccccEEEEecCCCCh-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHH
Q psy11213        493 KRSIEQNIQLPAALLSRFDLLWLIQDKPDR-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSS  571 (621)
Q Consensus       493 ~~~~~~~~~L~~aLlsRFDli~~~~d~~d~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~  571 (621)
                            .-...+++++|| ++.+..++++. ++..++......   ....+....+.++.+++......+++  +.+++.
T Consensus       160 ------~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~~~---~~~~~~~~~~vis~eel~~lq~~v~~--V~v~d~  227 (498)
T PRK13531        160 ------ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQD---ENDNPVPASLQITDEEYQQWQKEIGK--ITLPDH  227 (498)
T ss_pred             ------cCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcccc---cccCCCcccCCCCHHHHHHHHHHhcc--eeCCHH
Confidence                  113557999999 88888999974 444666653210   01111122456899999888877765  788999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        572 LTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       572 a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +.++|.+....+|+.    .+...+|+|...+++++++|+|.+++|+.|+
T Consensus       228 v~eyI~~L~~~lr~~----r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~  273 (498)
T PRK13531        228 VFELIFQLRQQLDAL----PNAPYVSDRRWKKAIRLLQASAFFSGRDAIA  273 (498)
T ss_pred             HHHHHHHHHHHHhcC----CCCCCcCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            998888776555543    1233589999999999999999999999985

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.87  E-value=6.2e-22  Score=209.52  Aligned_cols=250  Identities=27%  Similarity=0.331  Sum_probs=186.1

Q ss_pred             ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCc
Q psy11213        343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPI  418 (621)
Q Consensus       343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~  418 (621)
                      ..|++..+..++.++..++         |+||.|+||||||+|++.+|+.+...    .++++..++.  +++.......
T Consensus        26 ~~g~~~~~~~~l~a~~~~~---------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d--~~G~~~~~~~   94 (329)
T COG0714          26 VVGDEEVIELALLALLAGG---------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSD--LLGTYAYAAL   94 (329)
T ss_pred             eeccHHHHHHHHHHHHcCC---------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHH--hcCchhHhhh
Confidence            4456656666666777777         99999999999999999999996643    3444555444  6776666655


Q ss_pred             ---ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeE-EecCCcceEEeecCCCCCCCCCCC
Q psy11213        419 ---TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIM-TRLNARVSILAAANPAYGRYNPKR  494 (621)
Q Consensus       419 ---~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~-~~l~ar~~viAa~Np~~g~~~~~~  494 (621)
                         .+.+.+.+|.+..+.++++++|||++.+++.+++|+++|+++.+++  .|.. ..++..+.++||+||.+       
T Consensus        95 ~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e-------  165 (329)
T COG0714          95 LLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGE-------  165 (329)
T ss_pred             hccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccc-------
Confidence               7889999999998888899999999999999999999999999999  4666 88999999999999873       


Q ss_pred             CcccccCCCHhHhccccEEEEecCCCChHHHHHH-HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHH
Q psy11213        495 SIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL-AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLT  573 (621)
Q Consensus       495 ~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i-a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~  573 (621)
                       ..+..+|++|+++|| ++.+..++|+.+.+..+ ..+...... ........+.++...+.++....+  +..+++++.
T Consensus       166 -~~g~~~l~eA~ldRf-~~~~~v~yp~~~~e~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~  240 (329)
T COG0714         166 -YEGTYPLPEALLDRF-LLRIYVDYPDSEEEERIILARVGGVDE-LDLESLVKPVLSDEELLRLQKEVK--KVPVSDEVI  240 (329)
T ss_pred             -cCCCcCCCHHHHhhE-EEEEecCCCCchHHHHHHHHhCccccc-cccchhhhhhhCHHHHHHHHhhhc--cCCchHHHH
Confidence             455668999999999 78899999955554444 333321000 001111233444444444333332  578888999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V  620 (621)
                      +++.......|....   .....++|....++..++++|.+.++..|
T Consensus       241 ~~~~~l~~~~~~~~~---~~~~~s~r~~~~~~~~~~~~a~~~~~~~~  284 (329)
T COG0714         241 DYIVTLVAALREAPD---VALGASPRASLALLAALRALALLDGRDAV  284 (329)
T ss_pred             HHHHHHHHhhccccc---hhccCCchhHHHHHHHHHhhhhhcCcccc
Confidence            998888776665432   23457899999999999999999998876

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.87  E-value=3.5e-22  Score=209.00  Aligned_cols=253  Identities=21%  Similarity=0.230  Sum_probs=182.0

Q ss_pred             ccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC--------------
Q psy11213        337 ENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR--------------  402 (621)
Q Consensus       337 ~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~--------------  402 (621)
                      .+--+..+|++..-..++.......       -..+|+.|+.|||||+++|+++.++|....+.|.              
T Consensus        13 ~~pf~aivGqd~lk~aL~l~av~P~-------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~   85 (423)
T COG1239          13 NLPFTAIVGQDPLKLALGLNAVDPQ-------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCD   85 (423)
T ss_pred             ccchhhhcCchHHHHHHhhhhcccc-------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhH
Confidence            3445666777643333322222221       1289999999999999999999999976533332              


Q ss_pred             --------------------------CCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhH
Q psy11213        403 --------------------------GSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIH  454 (621)
Q Consensus       403 --------------------------~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~  454 (621)
                                                +++.--+.+++....  ..|.-.++||.|..||+||++|||++.+++..++.||
T Consensus        86 ~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LL  165 (423)
T COG1239          86 ECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALL  165 (423)
T ss_pred             HHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHH
Confidence                                      111111222221111  2477789999999999999999999999999999999


Q ss_pred             hhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        455 EVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       455 eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ++|+.+.-.+.+.|+..++|++|.+|||+||.+|            +|.++|+|||++.+-+-...+.+...+|.++.+.
T Consensus       166 d~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~  233 (423)
T COG1239         166 DVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA  233 (423)
T ss_pred             HHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence            9999987777779999999999999999999987            5999999999988888777788888888887765


Q ss_pred             hhccCCCCCCCCCC--CCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHH
Q psy11213        535 VHKHSRQPPTELKP--IDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTA  610 (621)
Q Consensus       535 ~~~~~~~~~~~~~~--i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A  610 (621)
                      ..   ..|..-...  -....||.-+..||+.  .+.+++.+..++.+.-..+    .-      -+.|.-..+.|.|+|
T Consensus       234 f~---~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~----~v------~g~radi~~~r~a~a  300 (423)
T COG1239         234 FE---AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL----AV------DGHRADIVVVRAAKA  300 (423)
T ss_pred             hh---cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh----cc------CCCchhhHHHHHHHH
Confidence            41   111100011  1244556556666665  7788888888777653221    11      137888899999999


Q ss_pred             HHHhcCCCCCC
Q psy11213        611 LARLRLCDEFQ  621 (621)
Q Consensus       611 ~Akl~lr~~V~  621 (621)
                      +|.+.++.+|+
T Consensus       301 ~aa~~Gr~~v~  311 (423)
T COG1239         301 LAALRGRTEVE  311 (423)
T ss_pred             HHHhcCceeee
Confidence            99999999885

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.86  E-value=5.1e-22  Score=177.13  Aligned_cols=125  Identities=30%  Similarity=0.420  Sum_probs=93.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      ||||.|.||+|||++++++|+.+.    |..+++...++.  +++..+.+..+++|.+.+|++.   .+|+++||||+++
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsD--i~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrap   75 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSD--ILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAP   75 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHH--HHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccc--ceeeeeeccCCCeeEeecChhh---hceeeecccccCC
Confidence            899999999999999999999854    455666766666  8888888888899999999998   6899999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      +..|++|+|+|+++.+++  .|....+|..+.||||.||.+        ..+.+.||++++|||
T Consensus        76 pktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e--------~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   76 PKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVE--------QEGTYPLPEAQLDRF  129 (131)
T ss_dssp             HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT----------S------HHHHTTS
T ss_pred             HHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccc--------cCceecCCHHHhccc
Confidence            999999999999999999  799999999999999999984        456679999999999

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.86  E-value=4.8e-22  Score=192.54  Aligned_cols=150  Identities=25%  Similarity=0.386  Sum_probs=84.2

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEecCC----CCcccc------ceEE-EeecC---------cccceeeecc
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR----GSSGVG------LTAA-VMKDP---------ITNEMVLEGG  427 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~----~~s~~g------Lta~-~~~~~---------~~g~~~l~~G  427 (621)
                      |++|+||+|+||||||++++.+..++|........    ..+..|      +... ..+.+         ..|....+||
T Consensus        21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG  100 (206)
T PF01078_consen   21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG  100 (206)
T ss_dssp             CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC
Confidence            45699999999999999999999999875432211    111111      1110 11111         1234478999


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCC-CCCCc------cc-
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYN-PKRSI------EQ-  498 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~-~~~~~------~~-  498 (621)
                      .+.+||+||+|+||++.+++....+|.++||++.+.|+++|...++|++|.+|||+||+ +|.|. +....      .. 
T Consensus       101 eislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~  180 (206)
T PF01078_consen  101 EISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRR  180 (206)
T ss_dssp             CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------------
T ss_pred             HHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999997 56554 22221      11 


Q ss_pred             -ccCCCHhHhccccEEEEec
Q psy11213        499 -NIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       499 -~~~L~~aLlsRFDli~~~~  517 (621)
                       .-.|+.||+||||+.+.+.
T Consensus       181 Y~~rlsgpllDRiDi~v~~~  200 (206)
T PF01078_consen  181 YQSRLSGPLLDRIDIHVEVP  200 (206)
T ss_dssp             --------------------
T ss_pred             cccccccccccccccccccc
Confidence             2369999999999766553

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.3e-21  Score=205.36  Aligned_cols=226  Identities=22%  Similarity=0.307  Sum_probs=152.4

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEe-----------cCC------------------CCccccceEEEeecCc
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT-----------TGR------------------GSSGVGLTAAVMKDPI  418 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----------~g~------------------~~s~~gLta~~~~~~~  418 (621)
                      |++|+||+||||||||+|++.+..++|.....           .|.                  ..|.+.|        .
T Consensus       197 GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aL--------v  268 (490)
T COG0606         197 GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAAL--------V  268 (490)
T ss_pred             cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHH--------h
Confidence            67899999999999999999999998874311           111                  1111111        1


Q ss_pred             ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCC-C-
Q psy11213        419 TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKR-S-  495 (621)
Q Consensus       419 ~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~-~-  495 (621)
                      .|.-.-++|.+.+||+||+|+||+-....+..++|.+.||.+.+.|++++...++|++|.++||+||+ +|.|.... . 
T Consensus       269 GGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C  348 (490)
T COG0606         269 GGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRC  348 (490)
T ss_pred             CCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCc
Confidence            34456789999999999999999999999999999999999999999999999999999999999997 56554322 2 


Q ss_pred             -cc------cccCCCHhHhccccEEEEecCCCChH---------HHHHHHHHHHhhhcc--CCCCC-CCCCCCCHHHHHH
Q psy11213        496 -IE------QNIQLPAALLSRFDLLWLIQDKPDRD---------NDLKLAQHITYVHKH--SRQPP-TELKPIDMSLVRR  556 (621)
Q Consensus       496 -~~------~~~~L~~aLlsRFDli~~~~d~~d~~---------~d~~ia~~il~~~~~--~~~~~-~~~~~i~~~~lr~  556 (621)
                       ..      -.-+|+.+|+||+|+..-+.+.+-.+         .-..+.+.+...+..  .+... .....++.+.|++
T Consensus       349 ~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k  428 (490)
T COG0606         349 PCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRK  428 (490)
T ss_pred             CCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHH
Confidence             11      12369999999999887775543111         112222222211100  00000 0122344444444


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        557 YIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       557 ~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V  620 (621)
                      ++        .++.++.+++...   ++        ...+|.|....++|+|...|.|.+++.|
T Consensus       429 ~~--------~L~~~~~~~L~~a---l~--------~~~lS~R~~~rILKvarTiADL~g~~~i  473 (490)
T COG0606         429 FC--------ALQREDADLLKAA---LE--------RLGLSARAYHRILKVARTIADLEGSEQI  473 (490)
T ss_pred             hc--------ccCHhHHHHHHHH---HH--------hcchhHHHHHHHHHHHhhhhcccCcchh
Confidence            32        2333444444331   11        2347899999999999999999998776

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.83  E-value=2.2e-19  Score=185.89  Aligned_cols=210  Identities=16%  Similarity=0.131  Sum_probs=152.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec--CCCCccccceEEEeec--Ccccceeeeccceeec--CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRGSSGVGLTAAVMKD--PITNEMVLEGGALVLA--DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~~s~~gLta~~~~~--~~~g~~~l~~GalvlA--d~gi~~IDEidk  444 (621)
                      ||||.|+||||||++++.+|+.+....+..  ....+...+++.....  ...+...+..|++..|  +++++++||||.
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~  145 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA  145 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence            999999999999999999999876654322  2223333355543222  1223366789999776  677899999999


Q ss_pred             CChhhhhhhHhhhc-ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        445 LPDADRTAIHEVME-QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       445 ~~~~~~~~L~eame-~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      ++++.+..|+.++| .+.+.+...+.....+..|.++||+||.+ .-|...-+.+...|+.+++||| ++.+..++|+.+
T Consensus       146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g-~Gd~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~e  223 (327)
T TIGR01650       146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG-LGDTTGLYHGTQQINQAQMDRW-SIVTTLNYLEHD  223 (327)
T ss_pred             cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC-cCCCCcceeeeecCCHHHHhhe-eeEeeCCCCCHH
Confidence            99999999999999 56888876666666666899999999974 2244444778889999999999 566779999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213        524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA  603 (621)
Q Consensus       524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les  603 (621)
                      .+.+|.......             ++               ...++++.+++++.....|+....+.-...+|+|.+.+
T Consensus       224 ~E~~Il~~~~~~-------------~~---------------~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~  275 (327)
T TIGR01650       224 NEAAIVLAKAKG-------------FD---------------DTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVIT  275 (327)
T ss_pred             HHHHHHHhhccC-------------CC---------------ccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHH
Confidence            999987643110             00               00134566677777777776443333455689999999


Q ss_pred             HHHHHHH
Q psy11213        604 ILRLSTA  610 (621)
Q Consensus       604 lirla~A  610 (621)
                      +++.+..
T Consensus       276 w~~~~~~  282 (327)
T TIGR01650       276 WAENAEI  282 (327)
T ss_pred             HHHHHHh
Confidence            9988764

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.83  E-value=6.2e-20  Score=205.34  Aligned_cols=206  Identities=20%  Similarity=0.229  Sum_probs=161.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc--cEEecCCCCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR--SQYTTGRGSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr--~~~~~g~~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      .|||.|++|||||++++.++.++|.  .+.....+.|...|.++...+.  ..|..++++|.|.+||+||+|+||++.++
T Consensus        27 Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~  106 (584)
T PRK13406         27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLE  106 (584)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCC
Confidence            7999999999999999999999886  4455566777777777653322  25676799999999999999999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL  526 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~  526 (621)
                      +..+++|+++||.+.++|+++|.+.++|++|.+||+.|+..  |        ...|+++|+|||||.+.+ +.+......
T Consensus       107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~--~--------~~~L~~~lLDRf~l~v~v-~~~~~~~~~  175 (584)
T PRK13406        107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE--E--------DERAPAALADRLAFHLDL-DGLALRDAR  175 (584)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh--c--------ccCCCHHhHhheEEEEEc-CCCChHHhc
Confidence            99999999999999999999999999999999999977752  1        147999999999865555 444433221


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc-CHHHHHH
Q psy11213        527 KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYT-SARNLLA  603 (621)
Q Consensus       527 ~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~-t~R~les  603 (621)
                      .                   ...+.+.    |..||+.  +..++++..+++.+.+..+           .+ |.|....
T Consensus       176 ~-------------------~~~~~~~----I~~AR~rl~~v~v~~~~l~~i~~~~~~~-----------gv~S~Ra~i~  221 (584)
T PRK13406        176 E-------------------IPIDADD----IAAARARLPAVGPPPEAIAALCAAAAAL-----------GIASLRAPLL  221 (584)
T ss_pred             c-------------------cCCCHHH----HHHHHHHHccCCCCHHHHHHHHHHHHHh-----------CCCCcCHHHH
Confidence            0                   1122232    3333332  7889999888877655431           23 8999999


Q ss_pred             HHHHHHHHHHhcCCCCCC
Q psy11213        604 ILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       604 lirla~A~Akl~lr~~V~  621 (621)
                      ++|+|+|+|.|++++.|+
T Consensus       222 llraARa~AaL~Gr~~V~  239 (584)
T PRK13406        222 ALRAARAAAALAGRTAVE  239 (584)
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            999999999999999985

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.80  E-value=1.7e-18  Score=177.36  Aligned_cols=201  Identities=19%  Similarity=0.224  Sum_probs=142.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe-cCC-CCccccceEEEe----------------ecCcccceeeeccceee
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT-TGR-GSSGVGLTAAVM----------------KDPITNEMVLEGGALVL  431 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~-~~s~~gLta~~~----------------~~~~~g~~~l~~Galvl  431 (621)
                      .|+||.|+||||||++++++++.+...... ++. ......+.+...                +........+.+|++..
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  101 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL  101 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence            499999999999999999999876554432 121 111112222110                00001223456888876


Q ss_pred             c--CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC---CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        432 A--DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA---GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       432 A--d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~---gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      |  +|++++|||+|+++++.++.|+++|+++.+++...   +.....+..+.||||+||..        ..+..+++++|
T Consensus       102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~--------~~g~~~l~~aL  173 (262)
T TIGR02640       102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE--------YAGVHETQDAL  173 (262)
T ss_pred             HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc--------ccceecccHHH
Confidence            4  78999999999999999999999999999888532   34456778899999999962        33344679999


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKV  586 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~  586 (621)
                      ++||  ..+..+.|+.+.+.+|.+..                                 ..++++..+.+++.+.++|..
T Consensus       174 ~~R~--~~i~i~~P~~~~e~~Il~~~---------------------------------~~~~~~~~~~iv~~~~~~R~~  218 (262)
T TIGR02640       174 LDRL--ITIFMDYPDIDTETAILRAK---------------------------------TDVAEDSAATIVRLVREFRAS  218 (262)
T ss_pred             Hhhc--EEEECCCCCHHHHHHHHHHh---------------------------------hCCCHHHHHHHHHHHHHHHhh
Confidence            9999  78888999999888887642                                 134667888999999999932


Q ss_pred             hhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        587 ARNSRDMSYTSARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       587 ~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V  620 (621)
                      .    .....++|++..+.|.++++   .++..|
T Consensus       219 ~----~~~~~~~r~~i~~~~~~~~~---~~~~~~  245 (262)
T TIGR02640       219 G----DEITSGLRASLMIAEVATQQ---DIPVDV  245 (262)
T ss_pred             C----CccCCcHHHHHHHHHHHHHc---CCCCCC
Confidence            1    12335688887766666655   556655

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.69  E-value=8.8e-17  Score=156.98  Aligned_cols=171  Identities=23%  Similarity=0.294  Sum_probs=107.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      |+||+||||+|||+||+.+|+.+...... +|......+-.++.          +    --+..+-|+|||||++++...
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i----------l----~~l~~~~ILFIDEIHRlnk~~  117 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI----------L----TNLKEGDILFIDEIHRLNKAQ  117 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH----------H----HT--TT-EEEECTCCC--HHH
T ss_pred             eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH----------H----HhcCCCcEEEEechhhccHHH
Confidence            99999999999999999999997765532 22111111100000          0    012357799999999999999


Q ss_pred             hhhhHhhhcceEEEE-ecCC---eEEecC-CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        450 RTAIHEVMEQQTISI-AKAG---IMTRLN-ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       450 ~~~L~eame~q~isi-~k~g---i~~~l~-ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +..|+.+||++.+.+ ..+|   ....++ .+|++|+|++..+             .|++||.+||.+++-+ +      
T Consensus       118 qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-------------~ls~pLrdRFgi~~~l-~------  177 (233)
T PF05496_consen  118 QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-------------LLSSPLRDRFGIVLRL-E------  177 (233)
T ss_dssp             HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-------------CTSHCCCTTSSEEEE---------
T ss_pred             HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-------------ccchhHHhhcceecch-h------
Confidence            999999999999865 2333   222332 3599999998763             5999999999754433 2      


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213        525 DLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA  603 (621)
Q Consensus       525 d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les  603 (621)
                                             .++.++|.+.+..+... +..+++++...|++.              ..-|||-...
T Consensus       178 -----------------------~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r--------------srGtPRiAnr  220 (233)
T PF05496_consen  178 -----------------------FYSEEELAKIVKRSARILNIEIDEDAAEEIARR--------------SRGTPRIANR  220 (233)
T ss_dssp             -------------------------THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC--------------TTTSHHHHHH
T ss_pred             -----------------------cCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh--------------cCCChHHHHH
Confidence                                   34556666777655444 788899888877652              1237998888


Q ss_pred             HHHHHHHHH
Q psy11213        604 ILRLSTALA  612 (621)
Q Consensus       604 lirla~A~A  612 (621)
                      |+|-....|
T Consensus       221 ll~rvrD~a  229 (233)
T PF05496_consen  221 LLRRVRDFA  229 (233)
T ss_dssp             HHHHHCCCC
T ss_pred             HHHHHHHHH
Confidence            887655443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.67  E-value=1.3e-16  Score=147.49  Aligned_cols=129  Identities=24%  Similarity=0.395  Sum_probs=96.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~~  446 (621)
                      ||||+|+||||||+|++++++.+....+.  ....++...|.+.....  .+...+.+|.++.|  ++++++||||++++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~   78 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP   78 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence            69999999999999999999998766533  33444555577665544  56777888988877  78999999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCC------cceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNA------RVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~a------r~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ++....|+.+++++.+.+...+.....+.      .+.+|||+||..         ....+++++|+|||
T Consensus        79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---------~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---------KGRKELSPALLDRF  139 (139)
T ss_dssp             HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred             HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---------CCcCcCCHHHHhhC
Confidence            99999999999999998766665555444      499999999984         22347999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PHA02244 ATPase-like protein

Probab=99.66  E-value=1.7e-15  Score=158.67  Aligned_cols=141  Identities=17%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCCCh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKLPD  447 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~~~  447 (621)
                      .||||.||||||||+|++++++.+.+..+..........+.+.+  + ..|  .++.|++..|  +||+|+|||++.+++
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i--~-~~g--~~~dgpLl~A~~~GgvLiLDEId~a~p  194 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI--D-ANG--KFHETPFYEAFKKGGLFFIDEIDASIP  194 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc--c-ccc--cccchHHHHHhhcCCEEEEeCcCcCCH
Confidence            49999999999999999999999776665543222222233211  1 133  3456666544  899999999999999


Q ss_pred             hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      +.+..|+.+++++.+.+  .|.....+.+|++|||+||....|+.  .+.+.-.|++++++||  +.+-.++|.
T Consensus       195 ~vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRF--v~I~~dyp~  262 (383)
T PHA02244        195 EALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRF--APIEFDYDE  262 (383)
T ss_pred             HHHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhc--EEeeCCCCc
Confidence            99999999999987766  46677778899999999997533432  2335567999999999  667788876

>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E

Probab=99.65  E-value=7.3e-17  Score=145.52  Aligned_cols=117  Identities=38%  Similarity=0.652  Sum_probs=84.0

Q ss_pred             hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcc
Q psy11213         87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKS  166 (621)
Q Consensus        87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~  166 (621)
                      +.+.+||++|..       .++|+++|++|+..++++|.||++||.+|+++||++|+++|.+|+++|++|+.+++..+..
T Consensus         3 ~~F~~Fl~~f~~-------~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~   75 (121)
T PF14551_consen    3 RRFREFLREFKE-------EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFP   75 (121)
T ss_dssp             HHHHHHCCCH-T-------S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT--
T ss_pred             HHHHHHHHcCCC-------chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345677777753       4689999999999999999999999999999999999999999999999999999876421


Q ss_pred             cccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccc--cceeEEEEeCCCCCCCcccccccccCCCcEEEEEE
Q psy11213        167 HDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDL--MRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRG  242 (621)
Q Consensus       167 ~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l--~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~G  242 (621)
                      ..                  .            ....|+..  ...++|++.+.  +...++|+|++.+|||||+|+|
T Consensus        76 ~~------------------~------------~~~~~~~~~~~~~~~v~~~~~--~~~~~iR~L~s~~igkLV~v~G  121 (121)
T PF14551_consen   76 SE------------------Q------------QSSFPPELKRRKEIQVRFYNL--PKSTSIRELRSSHIGKLVSVSG  121 (121)
T ss_dssp             --------------------------------------GCCTTTS--EEEEES---S-EE-GGG-SGGGTTSEEEEEE
T ss_pred             hh------------------c------------ccCCchhhccceeEEEEEcCC--CCCcCcCCCChHHCCCEEEEeC
Confidence            00                  0            00111111  13466777766  5789999999999999999999

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.64  E-value=3e-15  Score=169.50  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=118.8

Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCC-----e---EEecCCcceEEeecCCCCCCCCCCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG-----I---MTRLNARVSILAAANPAYGRYNPKRS  495 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~g-----i---~~~l~ar~~viAa~Np~~g~~~~~~~  495 (621)
                      +++|++..|+||++||||++.+++..|..|+++|+++++.+....     .   ....|+++.+|+++||..        
T Consensus       208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--------  279 (608)
T TIGR00764       208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--------  279 (608)
T ss_pred             CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence            579999999999999999999999999999999999999885431     1   234678899999999852        


Q ss_pred             cccccCCCHhHhcccc---EEEEecCC--CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCC
Q psy11213        496 IEQNIQLPAALLSRFD---LLWLIQDK--PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVP  569 (621)
Q Consensus       496 ~~~~~~L~~aLlsRFD---li~~~~d~--~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls  569 (621)
                         ..++.++|++||+   +.+.+.+.  .+.+....+++++...                      +  .+. ..|.++
T Consensus       280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~----------------------~--~r~G~l~~~s  332 (608)
T TIGR00764       280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE----------------------V--KKDGRIPHFT  332 (608)
T ss_pred             ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----------------------H--HHhCCCCcCC
Confidence               1358999999999   65555443  2334444455444321                      1  112 257899


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        570 SSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       570 ~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +++.+.|.++|..+  .  ...+..+++.|++.+++|.|.+.|+.+.++.|+
T Consensus       333 ~~Av~~Li~~~~R~--a--g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~  380 (608)
T TIGR00764       333 RDAVEEIVREAQRR--A--GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVT  380 (608)
T ss_pred             HHHHHHHHHHHHHH--H--hcccccCCCHHHHHHHHHHHHHHHHhcCCceec
Confidence            99999999886543  2  122346688999999999999999999887764

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.56  E-value=4.6e-14  Score=140.46  Aligned_cols=178  Identities=20%  Similarity=0.255  Sum_probs=117.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      |+||+||||.|||+||..+|+.+.-.. .|+|-.-...|-.++..              --+..+.|+|||||+++++..
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL--------------t~Le~~DVLFIDEIHrl~~~v  119 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL--------------TNLEEGDVLFIDEIHRLSPAV  119 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH--------------hcCCcCCeEEEehhhhcChhH
Confidence            999999999999999999999865443 22222211111111000              012357899999999999999


Q ss_pred             hhhhHhhhcceEEEE--ecC--C--eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        450 RTAIHEVMEQQTISI--AKA--G--IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       450 ~~~L~eame~q~isi--~k~--g--i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      -..|+.|||+-.+.|  .++  .  +...|| .|++|+|+-..+             .|+.||.+||.++.-+.      
T Consensus       120 EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-pFTLIGATTr~G-------------~lt~PLrdRFGi~~rle------  179 (332)
T COG2255         120 EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-PFTLIGATTRAG-------------MLTNPLRDRFGIIQRLE------  179 (332)
T ss_pred             HHHhhhhhhheeEEEEEccCCccceEeccCC-CeeEeeeccccc-------------cccchhHHhcCCeeeee------
Confidence            999999999988765  221  1  222344 388888887653             59999999998665542      


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213        524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL  602 (621)
Q Consensus       524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le  602 (621)
                                              .++.++|.+.+..+... +..+++++...|.+.       +       .-|||-..
T Consensus       180 ------------------------fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r-------S-------RGTPRIAn  221 (332)
T COG2255         180 ------------------------FYTVEELEEIVKRSAKILGIEIDEEAALEIARR-------S-------RGTPRIAN  221 (332)
T ss_pred             ------------------------cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh-------c-------cCCcHHHH
Confidence                                    34445555555444333 677777777666542       1       13677777


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy11213        603 AILRLSTALARLRLCDEF  620 (621)
Q Consensus       603 slirla~A~Akl~lr~~V  620 (621)
                      .|+|-..-.|-.+....+
T Consensus       222 RLLrRVRDfa~V~~~~~I  239 (332)
T COG2255         222 RLLRRVRDFAQVKGDGDI  239 (332)
T ss_pred             HHHHHHHHHHHHhcCCcc
Confidence            777777777766665544

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.50  E-value=6.5e-14  Score=150.92  Aligned_cols=199  Identities=15%  Similarity=0.200  Sum_probs=134.8

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceee-eccceeecCCCeeE
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVL-EGGALVLADQGICC  438 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l-~~GalvlAd~gi~~  438 (621)
                      .+.+|||.|+.||||..+|+++++.+||..     ..|+..+..   ..|+++. ....||.-.- ++|.+-+|+||.+|
T Consensus       267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLF  345 (560)
T COG3829         267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTLF  345 (560)
T ss_pred             CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeEE
Confidence            467999999999999999999999999853     234433222   1122211 1112332222 68999999999999


Q ss_pred             ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD  518 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d  518 (621)
                      +|||..|+..-|..|+.+++++.+.-  -|-+...+.++.||||+|..-.      ...+.-.+.+.|+-|...+-+..+
T Consensus       346 LDEIgempl~LQaKLLRVLQEkei~r--vG~t~~~~vDVRIIAATN~nL~------~~i~~G~FReDLYYRLNV~~i~iP  417 (560)
T COG3829         346 LDEIGEMPLPLQAKLLRVLQEKEIER--VGGTKPIPVDVRIIAATNRNLE------KMIAEGTFREDLYYRLNVIPITIP  417 (560)
T ss_pred             ehhhccCCHHHHHHHHHHHhhceEEe--cCCCCceeeEEEEEeccCcCHH------HHHhcCcchhhheeeeceeeecCC
Confidence            99999999999999999999987653  5888888999999999997511      122233567788888875555444


Q ss_pred             CCC-hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213        519 KPD-RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS  597 (621)
Q Consensus       519 ~~d-~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t  597 (621)
                      +.- ..+|.                    +.+-..+|.+|-..-.+..+.+++++.+.|.+|             .+|-+
T Consensus       418 PLReR~eDI--------------------~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y-------------~WPGN  464 (560)
T COG3829         418 PLRERKEDI--------------------PLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY-------------DWPGN  464 (560)
T ss_pred             CcccCcchH--------------------HHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC-------------CCCch
Confidence            321 12222                    222223344443332233456899998887664             57788


Q ss_pred             HHHHHHHHHHH
Q psy11213        598 ARNLLAILRLS  608 (621)
Q Consensus       598 ~R~leslirla  608 (621)
                      +|+|+++|.-+
T Consensus       465 VRELeNviER~  475 (560)
T COG3829         465 VRELENVIERA  475 (560)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.48  E-value=4.8e-13  Score=149.94  Aligned_cols=193  Identities=21%  Similarity=0.264  Sum_probs=120.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc---------EEe-cCCC---Ccccc----ceEEEeecC---------ccccee
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS---------QYT-TGRG---SSGVG----LTAAVMKDP---------ITNEMV  423 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---------~~~-~g~~---~s~~g----Lta~~~~~~---------~~g~~~  423 (621)
                      .|+||+||||||||++|+++++.+.+.         .|. ....   ....+    +.+++ .++         ..|...
T Consensus        87 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~  165 (531)
T TIGR02902        87 QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQ  165 (531)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCc-ccchhccccccccCCccc
Confidence            499999999999999999998653211         111 0100   00001    11111 111         122234


Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC---C------------eEEecCCcceEEeecCCCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA---G------------IMTRLNARVSILAAANPAYG  488 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~---g------------i~~~l~ar~~viAa~Np~~g  488 (621)
                      .++|.+..|++|+++|||++.|++..++.|+.+||++.+.+..+   +            ....+++++.+|+|+|... 
T Consensus       166 ~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-  244 (531)
T TIGR02902       166 PKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP-  244 (531)
T ss_pred             ccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc-
Confidence            56788999999999999999999999999999999988766411   0            0234688889988876432 


Q ss_pred             CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213        489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTV  568 (621)
Q Consensus       489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l  568 (621)
                                 ..+++++.|||.. +.+ ...+.++-.+++++.++                            +....+
T Consensus       245 -----------~~L~paLrsR~~~-I~f-~pL~~eei~~Il~~~a~----------------------------k~~i~i  283 (531)
T TIGR02902       245 -----------EEIPPALRSRCVE-IFF-RPLLDEEIKEIAKNAAE----------------------------KIGINL  283 (531)
T ss_pred             -----------ccCChHHhhhhhe-eeC-CCCCHHHHHHHHHHHHH----------------------------HcCCCc
Confidence                       1589999999943 333 33344444555554432                            124567


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       569 s~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V  620 (621)
                      ++++.+.|..+..               +.|++.++++.|...|..+.+..|
T Consensus       284 s~~al~~I~~y~~---------------n~Rel~nll~~Aa~~A~~~~~~~I  320 (531)
T TIGR02902       284 EKHALELIVKYAS---------------NGREAVNIVQLAAGIALGEGRKRI  320 (531)
T ss_pred             CHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHhhCCCcEE
Confidence            7777776654310               247777777777666655554433

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.45  E-value=6.2e-13  Score=150.33  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=112.5

Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC-----C---eEEecCCcceEEeecCCCCCCCCCCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA-----G---IMTRLNARVSILAAANPAYGRYNPKRS  495 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~-----g---i~~~l~ar~~viAa~Np~~g~~~~~~~  495 (621)
                      +++|++..|+||++||||++.|++..+..|+++|+++.+.+...     +   .....|+++.||+++|+.         
T Consensus       217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~---------  287 (637)
T PRK13765        217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD---------  287 (637)
T ss_pred             CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC---------
Confidence            49999999999999999999999999999999999999887321     0   034567889999999985         


Q ss_pred             cccccCCCHhHhcccc---EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc------CCC
Q psy11213        496 IEQNIQLPAALLSRFD---LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG------KNP  566 (621)
Q Consensus       496 ~~~~~~L~~aLlsRFD---li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~------~~p  566 (621)
                      ..  ..+.++|.+||.   ....+.+.                           ..-+.+..++|+.+..+      ..|
T Consensus       288 ll--~~~dpdL~~rfk~~~v~v~f~~~---------------------------~~d~~e~~~~~~~~iaqe~~~~G~l~  338 (637)
T PRK13765        288 AL--ENMHPALRSRIKGYGYEVYMRDT---------------------------MEDTPENRRKLVRFVAQEVKRDGKIP  338 (637)
T ss_pred             HH--HhhhHHHHHHhccCeEEEEcccc---------------------------cCCCHHHHHHHHHHHHHHhhhccCCC
Confidence            11  235789999985   22222111                           12234445555554332      246


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        567 TVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       567 ~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      .++++|...|+++|..+  ...  .+...+..|++..|+|.|...|+...++.|+
T Consensus       339 ~f~~eAVa~LI~~~~R~--ag~--r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~  389 (637)
T PRK13765        339 HFDRDAVEEIIREAKRR--AGR--KGHLTLKLRDLGGLVRVAGDIARSEGAELTT  389 (637)
T ss_pred             CCCHHHHHHHHHHHHHH--hCC--ccccccCHHHHHHHHHHHHHHHHhhccceec
Confidence            89999999999988643  211  1234456899999999999999998887653

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.44  E-value=5.5e-13  Score=141.97  Aligned_cols=202  Identities=19%  Similarity=0.255  Sum_probs=143.0

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.+|||.|++||||..+||+|++.+||..     ..|...+..   ..|++ ..+...||...-..|-+-+||||.+|+
T Consensus       245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG-HeKGAFTGA~~~r~GrFElAdGGTLFL  323 (550)
T COG3604         245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG-HEKGAFTGAINTRRGRFELADGGTLFL  323 (550)
T ss_pred             CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhc-ccccccccchhccCcceeecCCCeEec
Confidence            567999999999999999999999999853     233333221   12554 335556788888999999999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      |||..|+...|..|+.++.+|.|.-  -|...+++.++.||||+|..-      +....+-.+.+.|+-|.+ +|.+.=+
T Consensus       324 DEIGelPL~lQaKLLRvLQegEieR--vG~~r~ikVDVRiIAATNRDL------~~~V~~G~FRaDLYyRLs-V~Pl~lP  394 (550)
T COG3604         324 DEIGELPLALQAKLLRVLQEGEIER--VGGDRTIKVDVRVIAATNRDL------EEMVRDGEFRADLYYRLS-VFPLELP  394 (550)
T ss_pred             hhhccCCHHHHHHHHHHHhhcceee--cCCCceeEEEEEEEeccchhH------HHHHHcCcchhhhhhccc-ccccCCC
Confidence            9999999999999999999998764  688888999999999999751      012222356778888886 3333333


Q ss_pred             CChH--HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213        520 PDRD--NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS  597 (621)
Q Consensus       520 ~d~~--~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t  597 (621)
                      |=.+  .|.-+                    +-..+++++-..-......++.+|.+.|.+|             .+|-+
T Consensus       395 PLRER~~DIpl--------------------LA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y-------------~wPGN  441 (550)
T COG3604         395 PLRERPEDIPL--------------------LAGYFLEKFRRRLGRAILSLSAEALELLSSY-------------EWPGN  441 (550)
T ss_pred             CcccCCccHHH--------------------HHHHHHHHHHHhcCCcccccCHHHHHHHHcC-------------CCCCc
Confidence            3222  22211                    1112222222222122567899999988875             46678


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11213        598 ARNLLAILRLSTALA  612 (621)
Q Consensus       598 ~R~leslirla~A~A  612 (621)
                      +|.||.+++=|--.|
T Consensus       442 VRELen~veRavlla  456 (550)
T COG3604         442 VRELENVVERAVLLA  456 (550)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998887776

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.42  E-value=7.7e-13  Score=142.83  Aligned_cols=203  Identities=15%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.+||+.|+.||||-.+||++++.++|.-     ..++..+..   ..|++ ..+...||.-.-+.|.+-.|+||++|+
T Consensus       163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG-hekGAFTGA~~~r~G~fE~A~GGTLfL  241 (464)
T COG2204         163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG-HEKGAFTGAITRRIGRFEQANGGTLFL  241 (464)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc-ccccCcCCcccccCcceeEcCCceEEe
Confidence            456999999999999999999999988732     233433322   11332 112233666667889999999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      |||..|+-+.|..|+.+++++++.-  -|...+.+.++.||||+|..-.      .....-.+.+.|+.|+..+-+..++
T Consensus       242 DEI~~mpl~~Q~kLLRvLqe~~~~r--vG~~~~i~vdvRiIaaT~~dL~------~~v~~G~FReDLyyRLnV~~i~iPp  313 (464)
T COG2204         242 DEIGEMPLELQVKLLRVLQEREFER--VGGNKPIKVDVRIIAATNRDLE------EEVAAGRFREDLYYRLNVVPLRLPP  313 (464)
T ss_pred             eccccCCHHHHHHHHHHHHcCeeEe--cCCCcccceeeEEEeecCcCHH------HHHHcCCcHHHHHhhhccceecCCc
Confidence            9999999999999999999998765  5878888999999999997510      1222235788899998544333322


Q ss_pred             C-ChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        520 P-DRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       520 ~-d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      . +..+|.                    +.+-..+|+++........+.+++++.+.|..|             .+|-++
T Consensus       314 LRER~EDI--------------------p~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y-------------~WPGNV  360 (464)
T COG2204         314 LRERKEDI--------------------PLLAEHFLKRFAAELGRPPKGFSPEALAALLAY-------------DWPGNV  360 (464)
T ss_pred             ccccchhH--------------------HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-------------CCChHH
Confidence            2 111221                    222233455554444333678999999888764             577889


Q ss_pred             HHHHHHHHHHHHHH
Q psy11213        599 RNLLAILRLSTALA  612 (621)
Q Consensus       599 R~leslirla~A~A  612 (621)
                      |+|+++++-+-..+
T Consensus       361 REL~N~ver~~il~  374 (464)
T COG2204         361 RELENVVERAVILS  374 (464)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999988766554

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.40  E-value=1.7e-12  Score=140.50  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=116.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      +.|+||+||||||||++++++++.+....+..... .+..|..+........+.+.-..|.+..|.+||+||||+|++..
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~  187 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR  187 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence            45999999999999999999999876544432211 11112111100000000001122344567899999999999975


Q ss_pred             h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCC------------------
Q psy11213        448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNP------------------  492 (621)
Q Consensus       448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~------------------  492 (621)
                      .              .|++|+++||...+.+...|....-...+.+|+|+|+.   .|.|..                  
T Consensus       188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~  267 (412)
T PRK05342        188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA  267 (412)
T ss_pred             ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence            3              78999999997777775444333334678999999994   344431                  


Q ss_pred             CCC----------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHH
Q psy11213        493 KRS----------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLV  554 (621)
Q Consensus       493 ~~~----------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~l  554 (621)
                      ...          ..        ..+.+.|+|+.|+|. ++.....+.+...+|+..-++                 ..+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~-iv~f~~L~~~~L~~Il~~~~~-----------------~l~  329 (412)
T PRK05342        268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV-VATLEELDEEALVRILTEPKN-----------------ALV  329 (412)
T ss_pred             ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe-eeecCCCCHHHHHHHHHHHHH-----------------HHH
Confidence            000          00        112368889999984 444566677777776653221                 234


Q ss_pred             HHHHHHHHcC--CCCCCHHHHHHHHHH
Q psy11213        555 RRYIDLCKGK--NPTVPSSLTEHIVKA  579 (621)
Q Consensus       555 r~~i~~ar~~--~p~ls~~a~~~l~~~  579 (621)
                      ++|.......  ...+++++.++|++.
T Consensus       330 ~q~~~~l~~~~i~L~~t~~al~~Ia~~  356 (412)
T PRK05342        330 KQYQKLFEMDGVELEFTDEALEAIAKK  356 (412)
T ss_pred             HHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence            4444333222  667888888888763

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.40  E-value=1.5e-12  Score=137.55  Aligned_cols=198  Identities=18%  Similarity=0.224  Sum_probs=128.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||.|++||||+.+|++++..+++.     ...++..+..   ..|++. .....+|.-....|.+..|++|++|||
T Consensus        22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~-~~g~~~ga~~~~~G~~~~a~gGtL~Ld  100 (329)
T TIGR02974        22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH-EAGAFTGAQKRHQGRFERADGGTLFLD  100 (329)
T ss_pred             CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc-ccccccCcccccCCchhhCCCCEEEeC
Confidence            4599999999999999999999887652     1222222111   112211 111123333346788999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.|+...|..|+.+++.+.+.-  .|.....+.++.+|+|+|..-.      .....-.+.+.|+.|+....+.+++.
T Consensus       101 ei~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~rl~~~~i~lPpL  172 (329)
T TIGR02974       101 ELATASLLVQEKLLRVIEYGEFER--VGGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDRLAFDVITLPPL  172 (329)
T ss_pred             ChHhCCHHHHHHHHHHHHcCcEEe--cCCCceeccceEEEEechhhHH------HHhhcCchHHHHHHHhcchhcCCCch
Confidence            999999999999999999987654  4666677888999999997510      11223357789999996444433332


Q ss_pred             C-hHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--C--CCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        521 D-RDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--N--PTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       521 d-~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~--p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                      . ...|. .++++.                     +.+   ++++.  .  +.+++++.+.|..+             .+
T Consensus       173 ReR~eDI~~L~~~f---------------------l~~---~~~~~~~~~~~~ls~~a~~~L~~y-------------~W  215 (329)
T TIGR02974       173 RERQEDIMLLAEHF---------------------AIR---MARELGLPLFPGFTPQAREQLLEY-------------HW  215 (329)
T ss_pred             hhhhhhHHHHHHHH---------------------HHH---HHHHhCCCCCCCcCHHHHHHHHhC-------------CC
Confidence            2 12222 222232                     222   23322  2  57899988888764             46


Q ss_pred             ccCHHHHHHHHHHHHHHH
Q psy11213        595 YTSARNLLAILRLSTALA  612 (621)
Q Consensus       595 ~~t~R~leslirla~A~A  612 (621)
                      +-++|+|+++++-+-..+
T Consensus       216 PGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       216 PGNVRELKNVVERSVYRH  233 (329)
T ss_pred             CchHHHHHHHHHHHHHhC
Confidence            667888888876554443

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.39  E-value=1.5e-12  Score=140.22  Aligned_cols=208  Identities=18%  Similarity=0.247  Sum_probs=122.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      ..|+||+||||+|||++++++|+.+........ ...+..|..+.-.....++.....++.+..|.+||+||||+|++.+
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~  195 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR  195 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence            459999999999999999999988654332211 1111122221100000011111124556677899999999999986


Q ss_pred             --------------hhhhhhHhhhcceEEEEec-CCeEEecCCcceEEeecCCC---CCCCCC-----------------
Q psy11213        448 --------------ADRTAIHEVMEQQTISIAK-AGIMTRLNARVSILAAANPA---YGRYNP-----------------  492 (621)
Q Consensus       448 --------------~~~~~L~eame~q~isi~k-~gi~~~l~ar~~viAa~Np~---~g~~~~-----------------  492 (621)
                                    ..++.|+++||.....+.. .|..... ..+.+|.|+|..   .|.|+.                 
T Consensus       196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~-~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~  274 (413)
T TIGR00382       196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY-QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFG  274 (413)
T ss_pred             hhccccccccccchhHHHHHHHHhhccceecccCCCccccC-CCeEEEEcCCceeeecccccChHHHHHHHhhhcccccc
Confidence                          5899999999744444432 3433332 458899999983   344421                 


Q ss_pred             -C-CC-------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHH
Q psy11213        493 -K-RS-------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVR  555 (621)
Q Consensus       493 -~-~~-------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr  555 (621)
                       . ..       ..        ..+.+.|+|+.|+|.+ +...+.+.+.-.+|+..-++                 ..++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I-v~f~pL~~~~L~~Il~~~~n-----------------~l~k  336 (413)
T TIGR00382       275 AEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI-ATLEKLDEEALIAILTKPKN-----------------ALVK  336 (413)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE-eecCCCCHHHHHHHHHHHHH-----------------HHHH
Confidence             0 00       00        0224788999999844 55566777777777654321                 1344


Q ss_pred             HHHHHHH-cC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213        556 RYIDLCK-GK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       556 ~~i~~ar-~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslir  606 (621)
                      +|-.... +. .-.+++++.++|++.-.           ......|.|.++++
T Consensus       337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~-----------~~~~GAR~Lr~iie  378 (413)
T TIGR00382       337 QYQALFKMDNVELDFEEEALKAIAKKAL-----------ERKTGARGLRSIVE  378 (413)
T ss_pred             HHHHHhccCCeEEEECHHHHHHHHHhCC-----------CCCCCchHHHHHHH
Confidence            4443222 22 56778888888876411           12245677777665

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.38  E-value=1.1e-12  Score=136.48  Aligned_cols=112  Identities=29%  Similarity=0.404  Sum_probs=76.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecc-c-eeecCCCeeEecCCCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-A-LVLADQGICCIDEFDKLP  446 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-a-lvlAd~gi~~IDEidk~~  446 (621)
                      -.+++|+||||||||+|++.+++.+...+..-...++++       ++-  .+ +++.. . .....+-|+||||+++++
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv-------kdl--r~-i~e~a~~~~~~gr~tiLflDEIHRfn  117 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV-------KDL--RE-IIEEARKNRLLGRRTILFLDEIHRFN  117 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH-------HHH--HH-HHHHHHHHHhcCCceEEEEehhhhcC
Confidence            358999999999999999999998766554322211111       110  00 11110 0 111124589999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEee--cCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA--ANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa--~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ...|.+|+..||.++|.+               |||  -||.             +.|.+||+||. .+|.+...
T Consensus       118 K~QQD~lLp~vE~G~iil---------------IGATTENPs-------------F~ln~ALlSR~-~vf~lk~L  163 (436)
T COG2256         118 KAQQDALLPHVENGTIIL---------------IGATTENPS-------------FELNPALLSRA-RVFELKPL  163 (436)
T ss_pred             hhhhhhhhhhhcCCeEEE---------------EeccCCCCC-------------eeecHHHhhhh-heeeeecC
Confidence            999999999999998865               333  3887             57999999999 56666443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.37  E-value=7.2e-12  Score=128.44  Aligned_cols=187  Identities=16%  Similarity=0.232  Sum_probs=112.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceee-----eccceeecCCCeeEecCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVL-----EGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l-----~~GalvlAd~gi~~IDEidk  444 (621)
                      .|++|+||||||||++++.+++.+...    +..+... +. .+......+.|.-     ..+.+-.|.+||++|||++.
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l~~~----~~~~~~~-~v-~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~  116 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLFKEM----NVLSKGH-LI-EVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYS  116 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHhc----CcccCCc-eE-EecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhh
Confidence            499999999999999999999875221    1111100 00 0000000111110     12334456789999999998


Q ss_pred             CC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        445 LP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       445 ~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      +.        .+....|+..|++..             .++.+++|.++..        ...-..++++|.|||+..+.+
T Consensus       117 L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~--------~~~~~~~~p~L~sRf~~~i~f  175 (261)
T TIGR02881       117 LARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDE--------MDYFLSLNPGLRSRFPISIDF  175 (261)
T ss_pred             hccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcch--------hHHHHhcChHHHhccceEEEE
Confidence            75        235577888887642             3356666666542        111235789999999754444


Q ss_pred             cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11213        517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYT  596 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~  596 (621)
                       +.++.++...|+++.+.                            +....+++++.++|.+.+..++...    .....
T Consensus       176 -~~~~~~el~~Il~~~~~----------------------------~~~~~l~~~a~~~l~~~~~~~~~~~----~~~~g  222 (261)
T TIGR02881       176 -PDYTVEELMEIAERMVK----------------------------EREYKLTEEAKWKLREHLYKVDQLS----SREFS  222 (261)
T ss_pred             -CCCCHHHHHHHHHHHHH----------------------------HcCCccCHHHHHHHHHHHHHHHhcc----CCCCc
Confidence             45555555555554432                            1235688888888888776665321    12234


Q ss_pred             CHHHHHHHHHHHHHHHHhcC
Q psy11213        597 SARNLLAILRLSTALARLRL  616 (621)
Q Consensus       597 t~R~leslirla~A~Akl~l  616 (621)
                      +.|.+..++..|..+...++
T Consensus       223 n~R~~~n~~e~a~~~~~~r~  242 (261)
T TIGR02881       223 NARYVRNIIEKAIRRQAVRL  242 (261)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            67888888888877766553

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.34  E-value=1.3e-11  Score=130.79  Aligned_cols=153  Identities=19%  Similarity=0.224  Sum_probs=97.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~  448 (621)
                      |+||+||||||||++++.+++.+...... .+.....            .+..  . +.+ .+..+++++|||++.++..
T Consensus        53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------------~~~l--~-~~l~~l~~~~vl~IDEi~~l~~~  117 (328)
T PRK00080         53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------------PGDL--A-AILTNLEEGDVLFIDEIHRLSPV  117 (328)
T ss_pred             cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------------hHHH--H-HHHHhcccCCEEEEecHhhcchH
Confidence            89999999999999999999987543321 1110000            0000  0 000 1246789999999999988


Q ss_pred             hhhhhHhhhcceEEEE--ecCC----eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCCh
Q psy11213        449 DRTAIHEVMEQQTISI--AKAG----IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDR  522 (621)
Q Consensus       449 ~~~~L~eame~q~isi--~k~g----i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~  522 (621)
                      ....++.+|++..+.+  .++.    ....+| ++.+|+|+|+..             .++++|.|||++. +..+.++.
T Consensus       118 ~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~-------------~l~~~L~sRf~~~-~~l~~~~~  182 (328)
T PRK00080        118 VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG-------------LLTSPLRDRFGIV-QRLEFYTV  182 (328)
T ss_pred             HHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc-------------cCCHHHHHhcCee-eecCCCCH
Confidence            8889999999876543  2211    111234 478888888763             4889999999744 55567777


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      ++-.++.+......         ...++.+.+..++..++
T Consensus       183 ~e~~~il~~~~~~~---------~~~~~~~~~~~ia~~~~  213 (328)
T PRK00080        183 EELEKIVKRSARIL---------GVEIDEEGALEIARRSR  213 (328)
T ss_pred             HHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHcC
Confidence            77666666554321         12355565655555443

>CHL00181 cbbX CbbX; Provisional

Probab=99.33  E-value=7.5e-12  Score=129.72  Aligned_cols=138  Identities=18%  Similarity=0.224  Sum_probs=85.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-----eeccceeecCCCeeEecCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGALVLADQGICCIDEFD  443 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~GalvlAd~gi~~IDEid  443 (621)
                      +.|+||.||||||||++|+++++.+...-+.    ...  -...+..+...+.+.     ...+.+-.|.+||+||||++
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~----~~~--~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~  132 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKLGYI----KKG--HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAY  132 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCC----CCC--ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccc
Confidence            4599999999999999999999885321111    000  000000000011111     01234445789999999999


Q ss_pred             CC---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        444 KL---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       444 k~---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      .+         ..+.+..|+..|+++.             .++.||+|.++..        ...-..+.++|.+||+..+
T Consensus       133 ~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i  191 (287)
T CHL00181        133 YLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHV  191 (287)
T ss_pred             hhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceE
Confidence            86         4556788899998642             3467778776541        1122356799999998555


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      .+ +.++.++...|+.+.+.
T Consensus       192 ~F-~~~t~~el~~I~~~~l~  210 (287)
T CHL00181        192 DF-PDYTPEELLQIAKIMLE  210 (287)
T ss_pred             Ec-CCcCHHHHHHHHHHHHH
Confidence            44 55567777777777764

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.33  E-value=7.7e-12  Score=129.62  Aligned_cols=188  Identities=16%  Similarity=0.177  Sum_probs=110.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEec-CC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTT-GR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      ..|+||.||||||||++|+.+++.+...-+.. +.  ..+...+.+...-.  +..  ...+.+-.|.+|++||||++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~--~~~--~~~~~~~~a~~gvL~iDEi~~L  133 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGH--TAP--KTKEILKRAMGGVLFIDEAYYL  133 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhccc--chH--HHHHHHHHccCcEEEEechhhh
Confidence            35999999999999999998888754311100 00  00000011100000  000  0123445578899999999977


Q ss_pred             ---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        446 ---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       446 ---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                               ..+.+..|++.|+++.             .++.||+|+++..        ...-..+.++|.+||+..+.+
T Consensus       134 ~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~f  192 (284)
T TIGR02880       134 YRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDF  192 (284)
T ss_pred             ccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEe
Confidence                     3445678899998642             3467888877641        111235789999999855544


Q ss_pred             cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11213        517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYT  596 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~  596 (621)
                       +.++.++...|.++.+..                            ..+.+++++.+.+.++....+.      ..++-
T Consensus       193 -p~l~~edl~~I~~~~l~~----------------------------~~~~l~~~a~~~L~~~l~~~~~------~~~~G  237 (284)
T TIGR02880       193 -PDYSEAELLVIAGLMLKE----------------------------QQYRFSAEAEEAFADYIALRRT------QPHFA  237 (284)
T ss_pred             -CCcCHHHHHHHHHHHHHH----------------------------hccccCHHHHHHHHHHHHHhCC------CCCCC
Confidence             445566666666665432                            1245666666666654322211      23455


Q ss_pred             CHHHHHHHHHHHHHHHHhcC
Q psy11213        597 SARNLLAILRLSTALARLRL  616 (621)
Q Consensus       597 t~R~leslirla~A~Akl~l  616 (621)
                      +.|.+.++++-+......++
T Consensus       238 N~R~lrn~ve~~~~~~~~r~  257 (284)
T TIGR02880       238 NARSIRNAIDRARLRQANRL  257 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            67888888777766655544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=8.6e-12  Score=137.83  Aligned_cols=137  Identities=26%  Similarity=0.411  Sum_probs=88.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--ccce-e---eeccceeec------CCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEM-V---LEGGALVLA------DQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~-~---l~~GalvlA------d~gi~~  438 (621)
                      -+||+||||+|||+|++.+|+.+.|-.+-...|.         ++|..  .|.. +   -.||-++.+      .+-+.+
T Consensus       352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG---------vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~L  422 (782)
T COG0466         352 ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG---------VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFL  422 (782)
T ss_pred             EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc---------cccHHHhccccccccccCChHHHHHHHHhCCcCCeEE
Confidence            6899999999999999999999988765432211         12210  1111 1   124544433      456999


Q ss_pred             ecCCCCCChhhh----hhhHhhhcc-eEEEEe--cCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        439 IDEFDKLPDADR----TAIHEVMEQ-QTISIA--KAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       439 IDEidk~~~~~~----~~L~eame~-q~isi~--k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      |||||||..+.|    ++|+|+++- |.-+..  --...+.| +.+.+|||||...             .+|.|||||..
T Consensus       423 LDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl~-------------tIP~PLlDRME  488 (782)
T COG0466         423 LDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSLD-------------TIPAPLLDRME  488 (782)
T ss_pred             eechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hheEEEeecCccc-------------cCChHHhccee
Confidence            999999988776    699999962 221111  01111222 3488999999873             59999999996


Q ss_pred             EEEEecCCCChHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~i  532 (621)
                      +|-  ..-..+++-.+||+..
T Consensus       489 iI~--lsgYt~~EKl~IAk~~  507 (782)
T COG0466         489 VIR--LSGYTEDEKLEIAKRH  507 (782)
T ss_pred             eee--ecCCChHHHHHHHHHh
Confidence            433  3344556666777744

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.29  E-value=3.4e-11  Score=127.32  Aligned_cols=197  Identities=18%  Similarity=0.225  Sum_probs=125.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||.|++||||+.+|++++...++.   .  ..++..+..   ..+++.. ....+|.-....|.+..|++|++|||
T Consensus        29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~  107 (326)
T PRK11608         29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLD  107 (326)
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc-ccccCCcccccCCchhccCCCeEEeC
Confidence            4599999999999999999999887742   1  122222111   0122111 11112322334688889999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.++...|..|+.+++.+.+.-  .|.....+.++.||+|+|..-.      .....-.+.+.|+.||....+.+++.
T Consensus       108 ~i~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~l~~~~i~lPpL  179 (326)
T PRK11608        108 ELATAPMLVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDRLAFDVVQLPPL  179 (326)
T ss_pred             ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHhcCCCEEECCCh
Confidence            999999999999999999887653  4555677788999999987510      11223357889999996444443332


Q ss_pred             -ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        521 -DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK----NPTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       521 -d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~----~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                       +...|. .+++|.+                     +++   +++.    .+.+++++.+.|..+             .+
T Consensus       180 ReR~eDI~~L~~~fl---------------------~~~---~~~~~~~~~~~~s~~al~~L~~y-------------~W  222 (326)
T PRK11608        180 RERQSDIMLMAEHFA---------------------IQM---CRELGLPLFPGFTERARETLLNY-------------RW  222 (326)
T ss_pred             hhhhhhHHHHHHHHH---------------------HHH---HHHhCCCCCCCCCHHHHHHHHhC-------------CC
Confidence             222222 2333332                     222   2222    156888888877764             46


Q ss_pred             ccCHHHHHHHHHHHHHH
Q psy11213        595 YTSARNLLAILRLSTAL  611 (621)
Q Consensus       595 ~~t~R~leslirla~A~  611 (621)
                      +-++|+|+.+++-+-..
T Consensus       223 PGNvrEL~~vl~~a~~~  239 (326)
T PRK11608        223 PGNIRELKNVVERSVYR  239 (326)
T ss_pred             CcHHHHHHHHHHHHHHh
Confidence            66788888887766543

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.28  E-value=2.9e-11  Score=128.53  Aligned_cols=198  Identities=18%  Similarity=0.204  Sum_probs=130.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc------EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS------QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      +.|||+.|++||||+.+|+.++....|.      .+.|+..+..   ..|+| ..+...+|...-++|.+-.|+||++|+
T Consensus       101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG-~~kGaftGa~~~k~Glfe~A~GGtLfL  179 (403)
T COG1221         101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG-HEKGAFTGAQGGKAGLFEQANGGTLFL  179 (403)
T ss_pred             CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc-cccceeecccCCcCchheecCCCEEeh
Confidence            4599999999999999999999876652      2344443322   11333 223334565566899999999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||+..|++..|..|+.+||.+++.-  -|.....+.++.+++|+|-.-         .+.+.-...|++|-  ++..+..
T Consensus       180 DEI~~LP~~~Q~kLl~~le~g~~~r--vG~~~~~~~dVRli~AT~~~l---------~~~~~~g~dl~~rl--~~~~I~L  246 (403)
T COG1221         180 DEIHRLPPEGQEKLLRVLEEGEYRR--VGGSQPRPVDVRLICATTEDL---------EEAVLAGADLTRRL--NILTITL  246 (403)
T ss_pred             hhhhhCCHhHHHHHHHHHHcCceEe--cCCCCCcCCCceeeeccccCH---------HHHHHhhcchhhhh--cCceecC
Confidence            9999999999999999999998873  355778899999999998651         11111113555532  2223333


Q ss_pred             CChH---HHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213        520 PDRD---NDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRD  592 (621)
Q Consensus       520 ~d~~---~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~  592 (621)
                      |.-.   .|+ .+++|.+                     +   .+|++.   .+..++++...+..|             
T Consensus       247 PpLrER~~Di~~L~e~Fl---------------------~---~~~~~l~~~~~~~~~~a~~~L~~y-------------  289 (403)
T COG1221         247 PPLRERKEDILLLAEHFL---------------------K---SEARRLGLPLSVDSPEALRALLAY-------------  289 (403)
T ss_pred             CChhhchhhHHHHHHHHH---------------------H---HHHHHcCCCCCCCCHHHHHHHHhC-------------
Confidence            3221   111 2233332                     2   334443   334445676666654             


Q ss_pred             CCccCHHHHHHHHHHHHHHHHhcCC
Q psy11213        593 MSYTSARNLLAILRLSTALARLRLC  617 (621)
Q Consensus       593 ~~~~t~R~leslirla~A~Akl~lr  617 (621)
                      .++-++|+|++++..+-+.|.....
T Consensus       290 ~~pGNirELkN~Ve~~~~~~~~~~~  314 (403)
T COG1221         290 DWPGNIRELKNLVERAVAQASGEGQ  314 (403)
T ss_pred             CCCCcHHHHHHHHHHHHHHhccccC
Confidence            4556899999999999998875544

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.28  E-value=5.7e-11  Score=124.48  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~~  449 (621)
                      |++|+||||||||+|++.+++.+...........         ...  .+.+.   +.+ .+..+++++|||++.++++.
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~---------~~~--~~~l~---~~l~~~~~~~vl~iDEi~~l~~~~   97 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA---------LEK--PGDLA---AILTNLEEGDVLFIDEIHRLSPAV   97 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch---------hcC--chhHH---HHHHhcccCCEEEEehHhhhCHHH
Confidence            8999999999999999999998654332211000         000  01100   000 12346899999999999999


Q ss_pred             hhhhHhhhcceEEEE--ecC----CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        450 RTAIHEVMEQQTISI--AKA----GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       450 ~~~L~eame~q~isi--~k~----gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      +..|+.+|+.....+  ..+    .....++. +.+++++|...             .+++++.|||.+ .+..+.++.+
T Consensus        98 ~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~-------------~l~~~l~sR~~~-~~~l~~l~~~  162 (305)
T TIGR00635        98 EELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAG-------------MLTSPLRDRFGI-ILRLEFYTVE  162 (305)
T ss_pred             HHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCcc-------------ccCHHHHhhcce-EEEeCCCCHH
Confidence            999999998765432  211    11123343 66777776542             578999999964 4455677777


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      +-.++.+......         ...++.+.+..++..+
T Consensus       163 e~~~il~~~~~~~---------~~~~~~~al~~ia~~~  191 (305)
T TIGR00635       163 ELAEIVSRSAGLL---------NVEIEPEAALEIARRS  191 (305)
T ss_pred             HHHHHHHHHHHHh---------CCCcCHHHHHHHHHHh
Confidence            7666666554321         1245566665555544

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.24  E-value=3.5e-11  Score=139.95  Aligned_cols=141  Identities=24%  Similarity=0.396  Sum_probs=90.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC--ccccceEEEeecCcccceeeecccee------ecCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS--SGVGLTAAVMKDPITNEMVLEGGALV------LADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~--s~~gLta~~~~~~~~g~~~l~~Galv------lAd~gi~~IDEi  442 (621)
                      .++|+||||+|||++++.+++.+.+..+....+.  ....+.+....  ..|.   .+|.+.      ...+.|++|||+
T Consensus       351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~--~~g~---~~G~~~~~l~~~~~~~~villDEi  425 (784)
T PRK10787        351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRT--YIGS---MPGKLIQKMAKVGVKNPLFLLDEI  425 (784)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhc--cCCC---CCcHHHHHHHhcCCCCCEEEEECh
Confidence            6999999999999999999999877654322111  11112211100  0011   233222      123569999999


Q ss_pred             CCCChhhh----hhhHhhhcc-eEEEEecC--CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        443 DKLPDADR----TAIHEVMEQ-QTISIAKA--GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       443 dk~~~~~~----~~L~eame~-q~isi~k~--gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      |+++.+.+    ++|+++|+. |.....-.  .....+ .++.+|||+|..              .||+||++||+ + +
T Consensus       426 dk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~--------------~i~~aLl~R~~-i-i  488 (784)
T PRK10787        426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM--------------NIPAPLLDRME-V-I  488 (784)
T ss_pred             hhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEEcCCCC--------------CCCHHHhccee-e-e
Confidence            99998764    899999984 33333211  111222 458899999975              59999999995 3 3


Q ss_pred             ecCCCChHHHHHHHHHHH
Q psy11213        516 IQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il  533 (621)
                      .....+.++-.+|+++.+
T Consensus       489 ~~~~~t~eek~~Ia~~~L  506 (784)
T PRK10787        489 RLSGYTEDEKLNIAKRHL  506 (784)
T ss_pred             ecCCCCHHHHHHHHHHhh
Confidence            455566777788887665

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.23  E-value=5.4e-11  Score=134.25  Aligned_cols=197  Identities=20%  Similarity=0.235  Sum_probs=126.7

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.+|||.|++||||+.++++++..+++.   .  ..++..+..   ..|++.. +...+|...-..|.+..|++|++||
T Consensus       218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~l  296 (534)
T TIGR01817       218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFL  296 (534)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEE
Confidence            35699999999999999999999987642   1  222221111   0122111 1111222233567788999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.++...|..|+.+++.+.+.-  .|.....+.++.+|+|+|..-.      .....-.+.+.|+.|+..+.+..+.
T Consensus       297 dei~~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPp  368 (534)
T TIGR01817       297 DEIGEISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATNRDLE------EAVAKGEFRADLYYRINVVPIFLPP  368 (534)
T ss_pred             echhhCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCCCCHH------HHHHcCCCCHHHHHHhcCCeeeCCC
Confidence            9999999999999999999887654  3444556677899999986511      1222335788999999755544443


Q ss_pred             CC-hHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213        520 PD-RDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSY  595 (621)
Q Consensus       520 ~d-~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~  595 (621)
                      .. ..+|. .+++|.+.                     ++   +++.  .+.+++++.+.|..+             .++
T Consensus       369 LreR~eDi~~L~~~~l~---------------------~~---~~~~~~~~~~s~~a~~~L~~~-------------~WP  411 (534)
T TIGR01817       369 LRERREDIPLLAEAFLE---------------------KF---NRENGRPLTITPSAIRVLMSC-------------KWP  411 (534)
T ss_pred             cccccccHHHHHHHHHH---------------------HH---HHHcCCCCCCCHHHHHHHHhC-------------CCC
Confidence            32 22333 44554432                     22   2111  367888888877764             456


Q ss_pred             cCHHHHHHHHHHHHH
Q psy11213        596 TSARNLLAILRLSTA  610 (621)
Q Consensus       596 ~t~R~leslirla~A  610 (621)
                      -++|+|+++++-+-.
T Consensus       412 GNvrEL~~v~~~a~~  426 (534)
T TIGR01817       412 GNVRELENCLERTAT  426 (534)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            678888888776544

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.23  E-value=9e-11  Score=130.81  Aligned_cols=203  Identities=16%  Similarity=0.177  Sum_probs=126.1

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhh--------cccc---E--EecCCCCccccceEEEeecCccccee-----eeccce
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERL--------ARRS---Q--YTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGAL  429 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~--------~pr~---~--~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~Gal  429 (621)
                      .+.+|||.|++||||+.+|++++..        +++.   .  ..++..+..  +..+..+....|.|+     -.+|.+
T Consensus       241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~--lleseLFG~~~gaftga~~~~~~Gl~  318 (538)
T PRK15424        241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES--LLEAELFGYEEGAFTGSRRGGRAGLF  318 (538)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh--hHHHHhcCCccccccCccccccCCch
Confidence            3569999999999999999999987        4432   1  122221111  111111111122221     356888


Q ss_pred             eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      -.|++|++||||++.|+...|..|+.+++++.+.-  .|.....+.++.+|+|+|..-.      .....-.+.+.|+.|
T Consensus       319 e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~------~~v~~g~Fr~dL~yr  390 (538)
T PRK15424        319 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLE------EDVRQGRFRRDLFYR  390 (538)
T ss_pred             hccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe--cCCCceeccceEEEEecCCCHH------HHHhcccchHHHHHH
Confidence            89999999999999999999999999999988764  4666777889999999986511      112222467788888


Q ss_pred             ccEEEEecCCCCh-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHh
Q psy11213        510 FDLLWLIQDKPDR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVA  587 (621)
Q Consensus       510 FDli~~~~d~~d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~  587 (621)
                      +..+-+..++..+ .+|. .+++|.+                     +++   +++.+..+++++...+.+....|..- 
T Consensus       391 L~~~~I~lPPLReR~eDI~~L~~~fl---------------------~~~---~~~~~~~~~~~a~~~~~~a~~~L~~y-  445 (538)
T PRK15424        391 LSILRLQLPPLRERVADILPLAESFL---------------------KQS---LAALSAPFSAALRQGLQQCETLLLHY-  445 (538)
T ss_pred             hcCCeecCCChhhchhHHHHHHHHHH---------------------HHH---HHHcCCCCCHHHHHhhHHHHHHHHhC-
Confidence            8654444433322 1121 2233332                     221   22333457777776665554444432 


Q ss_pred             hcCCCCCccCHHHHHHHHHHHHH
Q psy11213        588 RNSRDMSYTSARNLLAILRLSTA  610 (621)
Q Consensus       588 ~~~~~~~~~t~R~leslirla~A  610 (621)
                           .+|-++|+|+++++-+-.
T Consensus       446 -----~WPGNvREL~nvier~~i  463 (538)
T PRK15424        446 -----DWPGNVRELRNLMERLAL  463 (538)
T ss_pred             -----CCCchHHHHHHHHHHHHH
Confidence                 466678888888775544

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.22  E-value=1.4e-10  Score=129.31  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=128.2

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCccccceEEEeecCccccee-----eeccceeecCCCee
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGALVLADQGIC  437 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~GalvlAd~gi~  437 (621)
                      .+.+|||.|++||||+.+|++++..+++.   .  ..++..+..  +..+..+....|.|+     -.+|.+-.|++|++
T Consensus       234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~--lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTL  311 (526)
T TIGR02329       234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES--LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTL  311 (526)
T ss_pred             CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh--HHHHHhcCCcccccccccccccccchhhcCCceE
Confidence            45699999999999999999999886552   1  222322211  111111111122221     35678888999999


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                      ||||++.|+...|..|+.+++++.+.-  .|.....+.++.+|+|+|..-.      .....-.+.+.|+.|+..+-+..
T Consensus       312 fLdeI~~Lp~~~Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat~~~l~------~~v~~g~fr~dL~~rL~~~~I~l  383 (526)
T TIGR02329       312 FLDEIGEMPLPLQTRLLRVLEEREVVR--VGGTEPVPVDVRVVAATHCALT------TAVQQGRFRRDLFYRLSILRIAL  383 (526)
T ss_pred             EecChHhCCHHHHHHHHHHHhcCcEEe--cCCCceeeecceEEeccCCCHH------HHhhhcchhHHHHHhcCCcEEeC
Confidence            999999999999999999999987654  4555667788999999986521      12223357778888987544444


Q ss_pred             CCC-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213        518 DKP-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSY  595 (621)
Q Consensus       518 d~~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~  595 (621)
                      ++. +..+|. .+++|.+.                     ++   ++.....+++++.+.+...+-.|..-      .+|
T Consensus       384 PPLReR~eDI~~L~~~fl~---------------------~~---~~~~~~~~~~~a~~~~~~~~~~L~~y------~WP  433 (526)
T TIGR02329       384 PPLRERPGDILPLAAEYLV---------------------QA---AAALRLPDSEAAAQVLAGVADPLQRY------PWP  433 (526)
T ss_pred             CCchhchhHHHHHHHHHHH---------------------HH---HHHcCCCCCHHHHHHhHHHHHHHHhC------CCC
Confidence            433 222232 23344432                     21   22223457778777755544444332      466


Q ss_pred             cCHHHHHHHHHHHHHH
Q psy11213        596 TSARNLLAILRLSTAL  611 (621)
Q Consensus       596 ~t~R~leslirla~A~  611 (621)
                      -++|+|+++++-+-..
T Consensus       434 GNvrEL~nvier~~i~  449 (526)
T TIGR02329       434 GNVRELRNLVERLALE  449 (526)
T ss_pred             chHHHHHHHHHHHHHh
Confidence            6788888887765543

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>KOG0737|consensus

Probab=99.20  E-value=6.3e-12  Score=129.70  Aligned_cols=164  Identities=23%  Similarity=0.268  Sum_probs=116.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec--------CCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--------DQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--------d~gi~~IDEi  442 (621)
                      +|||.||||||||++|+++|+.+.....         ++..+..    +++|.=++-.++.|        ...|+||||+
T Consensus       129 GiLL~GPpG~GKTmlAKA~Akeaga~fI---------nv~~s~l----t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEv  195 (386)
T KOG0737|consen  129 GILLYGPPGTGKTMLAKAIAKEAGANFI---------NVSVSNL----TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEV  195 (386)
T ss_pred             cceecCCCCchHHHHHHHHHHHcCCCcc---------eeecccc----chhhHHHHHHHHHHHHhhhhhcCcceeehhhH
Confidence            8999999999999999999998543221         1222221    23444333333322        4689999999


Q ss_pred             CCCChhhhhhhHhhhcc---eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        443 DKLPDADRTAIHEVMEQ---QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       443 dk~~~~~~~~L~eame~---q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      |.+.-.-+..=||||..   |-.. ..+|..+.-++++.|+||+|..             .+|.+|+++|+ -..++++.
T Consensus       196 ds~L~~R~s~dHEa~a~mK~eFM~-~WDGl~s~~~~rVlVlgATNRP-------------~DlDeAiiRR~-p~rf~V~l  260 (386)
T KOG0737|consen  196 DSFLGQRRSTDHEATAMMKNEFMA-LWDGLSSKDSERVLVLGATNRP-------------FDLDEAIIRRL-PRRFHVGL  260 (386)
T ss_pred             HHHHhhcccchHHHHHHHHHHHHH-HhccccCCCCceEEEEeCCCCC-------------ccHHHHHHHhC-cceeeeCC
Confidence            98766557777888642   2222 3467777778889999999987             48999999999 47788899


Q ss_pred             CChHHHHHHHHHHHhhhccCCCCC-----CCCCCCCHHHHHHHHHHHH
Q psy11213        520 PDRDNDLKLAQHITYVHKHSRQPP-----TELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       520 ~d~~~d~~ia~~il~~~~~~~~~~-----~~~~~i~~~~lr~~i~~ar  562 (621)
                      |+.+..++|.+-+++.......-.     .....++-..|+..+..|.
T Consensus       261 P~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa  308 (386)
T KOG0737|consen  261 PDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA  308 (386)
T ss_pred             CchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            999999999999886543221110     1245688888888887664

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.20  E-value=1.9e-10  Score=128.82  Aligned_cols=203  Identities=21%  Similarity=0.252  Sum_probs=131.4

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.+|||.|++||||+.++++++..+++..     ..+...+..   ..|++.. +...+|...-..|.+-.|+||++||
T Consensus       209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~l  287 (509)
T PRK05022        209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLFL  287 (509)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEEe
Confidence            456999999999999999999999877531     222222211   1122211 1112232233567788999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.++.+.|..|+.+++++.+.-  -|.....+.++.||||+|..-.      .....-.+.+.|+.|+..+-+.+++
T Consensus       288 deI~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~rl~~~~i~lPp  359 (509)
T PRK05022        288 DEIGELPLALQAKLLRVLQYGEIQR--VGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHRLSVFPLSVPP  359 (509)
T ss_pred             cChhhCCHHHHHHHHHHHhcCCEee--CCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhcccccEeeCCC
Confidence            9999999999999999999887643  3555667778999999987511      1122235788999998654444333


Q ss_pred             C-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213        520 P-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS  597 (621)
Q Consensus       520 ~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t  597 (621)
                      . +..+|. .+++|.                     ++++........+.+++++.+.|..+             .++-+
T Consensus       360 LreR~eDI~~L~~~f---------------------l~~~~~~~~~~~~~~s~~a~~~L~~y-------------~WPGN  405 (509)
T PRK05022        360 LRERGDDVLLLAGYF---------------------LEQNRARLGLRSLRLSPAAQAALLAY-------------DWPGN  405 (509)
T ss_pred             chhchhhHHHHHHHH---------------------HHHHHHHcCCCCCCCCHHHHHHHHhC-------------CCCCc
Confidence            2 222332 233333                     22321111112478899998888764             56778


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11213        598 ARNLLAILRLSTALAR  613 (621)
Q Consensus       598 ~R~leslirla~A~Ak  613 (621)
                      +|+|+++++-+-..|.
T Consensus       406 vrEL~~~i~ra~~~~~  421 (509)
T PRK05022        406 VRELEHVISRAALLAR  421 (509)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999998887766654

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.19  E-value=1.2e-11  Score=118.03  Aligned_cols=134  Identities=19%  Similarity=0.254  Sum_probs=90.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||+|++||||+.+|+++++.++|.     ...++..+..   ..|++.. ....+|....+.|.+..|++|+++||
T Consensus        22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~-~~~~~~~~~~~~G~l~~A~~GtL~Ld  100 (168)
T PF00158_consen   22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE-KGAFTGARSDKKGLLEQANGGTLFLD  100 (168)
T ss_dssp             TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC-SSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc-cccccccccccCCceeeccceEEeec
Confidence            4599999999999999999999987763     1223322211   1234321 22223444456799999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ||+.|++..|..|+.+|+++++..  .|.....+.++.||||+|..-.      ...++-.+.+.|+.|..
T Consensus       101 ~I~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~st~~~l~------~~v~~g~fr~dLy~rL~  163 (168)
T PF00158_consen  101 EIEDLPPELQAKLLRVLEEGKFTR--LGSDKPVPVDVRIIASTSKDLE------ELVEQGRFREDLYYRLN  163 (168)
T ss_dssp             TGGGS-HHHHHHHHHHHHHSEEEC--CTSSSEEE--EEEEEEESS-HH------HHHHTTSS-HHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHHhhchhcc--ccccccccccceEEeecCcCHH------HHHHcCCChHHHHHHhc
Confidence            999999999999999999998765  3444566778999999996410      12233357778887764

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.18  E-value=2.3e-11  Score=116.54  Aligned_cols=138  Identities=16%  Similarity=0.166  Sum_probs=84.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc-----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR-----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p-----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      .++||+||+|+|||.+++.+++.+-     +.+.......+.. --.   .........-.+|..-.+++||+++|||||
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~-~~~---~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG-DDV---ESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH-HHC---SCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc-chH---HhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            3899999999999999999999965     1111111110000 000   000000111123444455678999999999


Q ss_pred             CCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC-----CC---c------ccc
Q psy11213        445 LPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK-----RS---I------EQN  499 (621)
Q Consensus       445 ~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~-----~~---~------~~~  499 (621)
                      +.+           ..++.|+.+||.++++-. .|....+. ++.+|+|+|-........     ..   .      .-+
T Consensus        80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~~-n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (171)
T PF07724_consen   80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDTS-NIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE  157 (171)
T ss_dssp             CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEGT-TEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEeC-CceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence            999           999999999999999964 45444443 489999999752110000     00   0      001


Q ss_pred             cCCCHhHhccccEE
Q psy11213        500 IQLPAALLSRFDLL  513 (621)
Q Consensus       500 ~~L~~aLlsRFDli  513 (621)
                      ..+++.|+.|||.|
T Consensus       158 ~~f~pEf~~Ri~~i  171 (171)
T PF07724_consen  158 YGFRPEFLGRIDVI  171 (171)
T ss_dssp             HTS-HHHHTTSSEE
T ss_pred             cCCCHHHHccCCcC
Confidence            24889999999854

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR00763 lon ATP-dependent protease La

Probab=99.16  E-value=1.5e-10  Score=135.65  Aligned_cols=144  Identities=22%  Similarity=0.355  Sum_probs=88.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC--ccccceEE--EeecCcccceeeecccee--ecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS--SGVGLTAA--VMKDPITNEMVLEGGALV--LADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~--s~~gLta~--~~~~~~~g~~~l~~Galv--lAd~gi~~IDEidk  444 (621)
                      ++||+||||||||++++++++.+.+..+....+.  ....+.+.  .......|.. .+  ++.  ...+.|++|||||+
T Consensus       349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i-~~--~l~~~~~~~~villDEidk  425 (775)
T TIGR00763       349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRI-IQ--GLKKAKTKNPLFLLDEIDK  425 (775)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchH-HH--HHHHhCcCCCEEEEechhh
Confidence            7999999999999999999999866554322111  00001110  0000001110 00  111  12456999999999


Q ss_pred             CChhhh----hhhHhhhcc---eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        445 LPDADR----TAIHEVMEQ---QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       445 ~~~~~~----~~L~eame~---q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                      +..+.+    ++|+++|+.   +.+.-...+....+ .++.+|+|+|+..             .++++|+|||+  ++..
T Consensus       426 ~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~--vi~~  489 (775)
T TIGR00763       426 IGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSID-------------TIPRPLLDRME--VIEL  489 (775)
T ss_pred             cCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCch-------------hCCHHHhCCee--EEec
Confidence            986544    789999974   22221111222222 3578899999873             58999999995  3466


Q ss_pred             CCCChHHHHHHHHHHH
Q psy11213        518 DKPDRDNDLKLAQHIT  533 (621)
Q Consensus       518 d~~d~~~d~~ia~~il  533 (621)
                      ..++.++...|++..+
T Consensus       490 ~~~~~~e~~~I~~~~l  505 (775)
T TIGR00763       490 SGYTEEEKLEIAKKYL  505 (775)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            7777888888886543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.15  E-value=2.6e-10  Score=131.84  Aligned_cols=181  Identities=14%  Similarity=0.167  Sum_probs=110.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-----ccccceEEEeecCccccee-eecccee----ecCCCeeEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-----SGVGLTAAVMKDPITNEMV-LEGGALV----LADQGICCID  440 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-----s~~gLta~~~~~~~~g~~~-l~~Galv----lAd~gi~~ID  440 (621)
                      ++||+||||||||.+++.+|+.+...........     +...|.++     ..|... -+.|.+.    ....+|+++|
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~-----~~gyvg~~~~g~L~~~v~~~p~sVlllD  564 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA-----PPGYVGFDQGGLLTDAVIKHPHAVLLLD  564 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC-----CCCcccccccchHHHHHHhCCCcEEEec
Confidence            7999999999999999999998754432211110     00112111     011111 1223332    2246899999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCC-------CCCCCC---ccc--ccCCCHhHhc
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR-------YNPKRS---IEQ--NIQLPAALLS  508 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~-------~~~~~~---~~~--~~~L~~aLls  508 (621)
                      ||+|++++.++.|+.+|+++.++.. .|....+ .++.+|+|+|.....       |.....   ..+  ...++++|+.
T Consensus       565 Eieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~  642 (758)
T PRK11034        565 EIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN  642 (758)
T ss_pred             cHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc
Confidence            9999999999999999999999864 4543333 347899999943100       110000   000  1248999999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK  578 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~  578 (621)
                      |+|-++. ....+.+.-.+|+...+.                  .+.+.++ .+.....+++++.++|.+
T Consensus       643 Rid~ii~-f~~L~~~~l~~I~~~~l~------------------~~~~~l~-~~~i~l~~~~~~~~~l~~  692 (758)
T PRK11034        643 RLDNIIW-FDHLSTDVIHQVVDKFIV------------------ELQAQLD-QKGVSLEVSQEARDWLAE  692 (758)
T ss_pred             cCCEEEE-cCCCCHHHHHHHHHHHHH------------------HHHHHHH-HCCCCceECHHHHHHHHH
Confidence            9995544 456666666777765542                  1222221 122377889999988875

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.2e-10  Score=117.71  Aligned_cols=251  Identities=18%  Similarity=0.220  Sum_probs=140.7

Q ss_pred             ccceeeecccccccccccCceEEEeeeeeccccCCce-e---eecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        327 PRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFR-Q---VTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       327 p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~-~---~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      |+.|.-+|.+..++.-. ..++.-.+||....+-.+. .   .--+..||||+||+|+|||.||+.+|+++.-.+-..+.
T Consensus        52 P~eik~~Ld~YVIGQe~-AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          52 PKEIKAHLDEYVIGQEQ-AKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             hHHHHHHhhhheecchh-hhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            77777776544443222 2344445555322110000 0   11166799999999999999999999997665543332


Q ss_pred             -CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC--------------hhhhhhhHhhhcceEEEEecC
Q psy11213        403 -GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--------------DADRTAIHEVMEQQTISIAKA  467 (621)
Q Consensus       403 -~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--------------~~~~~~L~eame~q~isi~k~  467 (621)
                       .-+.+|..+--+.+-...-..--...+..|.+||++||||||+.              +..|.+|+..||.-..++.-.
T Consensus       131 TtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq  210 (408)
T COG1219         131 TTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ  210 (408)
T ss_pred             cchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence             22333333211100000000001234567889999999999964              446889999999888888655


Q ss_pred             CeEEecCCcceEEeecCCC---CCCCCC-------------------CCC---------cc--------cccCCCHhHhc
Q psy11213        468 GIMTRLNARVSILAAANPA---YGRYNP-------------------KRS---------IE--------QNIQLPAALLS  508 (621)
Q Consensus       468 gi~~~l~ar~~viAa~Np~---~g~~~~-------------------~~~---------~~--------~~~~L~~aLls  508 (621)
                      |...--+-.+.-+-|+|-.   +|.|+.                   .++         +.        -.+.|-|.+.-
T Consensus       211 GGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIG  290 (408)
T COG1219         211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIG  290 (408)
T ss_pred             CCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhc
Confidence            5544445557778888863   454431                   000         00        01245566666


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKV  586 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~  586 (621)
                      |+. ++...+..|++....|...                 -....+++|-..-..-  .-.++++|...|++...+  +.
T Consensus       291 RlP-via~L~~Lde~aLv~ILte-----------------PkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~--rk  350 (408)
T COG1219         291 RLP-VIATLEELDEDALVQILTE-----------------PKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIE--RK  350 (408)
T ss_pred             ccc-eeeehhhcCHHHHHHHHhc-----------------ccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHH--hc
Confidence            764 4444455555554444321                 1234566666554433  445688888888775432  21


Q ss_pred             hhcCCCCCccCHHHHHHHHHH
Q psy11213        587 ARNSRDMSYTSARNLLAILRL  607 (621)
Q Consensus       587 ~~~~~~~~~~t~R~leslirl  607 (621)
                               +..|.|.+++.-
T Consensus       351 ---------TGARGLRsI~E~  362 (408)
T COG1219         351 ---------TGARGLRSIIEE  362 (408)
T ss_pred             ---------cchhHHHHHHHH
Confidence                     357888777653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=99.11  E-value=6.9e-10  Score=114.17  Aligned_cols=206  Identities=15%  Similarity=0.171  Sum_probs=116.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecC---CCeeEecCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLAD---QGICCIDEFDK  444 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd---~gi~~IDEidk  444 (621)
                      +.|+||+||+|||||.+++..-+.++...|.... ..++ ..++........+......|....+.   +-|+|||+++.
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~-~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~  111 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA-QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM  111 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T-THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC-CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence            3599999999999999999877665554332111 0111 01111111111111222223322222   24999999998


Q ss_pred             CChhh------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213        445 LPDAD------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD  518 (621)
Q Consensus       445 ~~~~~------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d  518 (621)
                      -.++.      ...|.+.|+.+-+--.+......+ .++.++||+||..|+          ..+++.|++.|  ..+..+
T Consensus       112 p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr----------~~is~R~~r~f--~i~~~~  178 (272)
T PF12775_consen  112 PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGR----------NPISPRFLRHF--NILNIP  178 (272)
T ss_dssp             S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTE--EEEE--
T ss_pred             CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCC----------CCCChHHhhhe--EEEEec
Confidence            65443      345666677765544322222333 348899999998776          35899999999  667778


Q ss_pred             CCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC--CCCCcc
Q psy11213        519 KPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS--RDMSYT  596 (621)
Q Consensus       519 ~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~--~~~~~~  596 (621)
                      .|+.+.-..|-..++..+.....-       +           .. -..+.+.+.+..++.|..+++.-.-.  +.....
T Consensus       179 ~p~~~sl~~If~~il~~~l~~~~f-------~-----------~~-v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~F  239 (272)
T PF12775_consen  179 YPSDESLNTIFSSILQSHLKNGGF-------P-----------ED-VQKLADKLVQATIELYQKIRQQFLPTPSKPHYTF  239 (272)
T ss_dssp             --TCCHHHHHHHHHHHHHTCHTTS-------S-----------GG-GCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTS
T ss_pred             CCChHHHHHHHHHHHhhhcccCCC-------C-----------hH-HHHHHHHHHHHHHHHHHhhhcccCCCCccceeec
Confidence            899998888888887765321110       0           00 12345566777888888888764321  123347


Q ss_pred             CHHHHHHHHHH
Q psy11213        597 SARNLLAILRL  607 (621)
Q Consensus       597 t~R~leslirl  607 (621)
                      ++|.+..+++-
T Consensus       240 nlRDlsrv~qG  250 (272)
T PF12775_consen  240 NLRDLSRVFQG  250 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            88888877654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.11  E-value=5.5e-10  Score=128.78  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.+|||.|++||||+.+|++++..+++.   .  ..++..+..   ..|.+...    .+...-.+|.+-.|++|++||
T Consensus       347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~l  422 (638)
T PRK11388        347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFL  422 (638)
T ss_pred             cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEE
Confidence            34699999999999999999999887642   1  222322211   11332210    011122467788899999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.|+.+.|..|+.+++.+.+.-  .|.....+.++.||+|+|....      ...+.-.+.+.|+.|+...-+.+++
T Consensus       423 dei~~l~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~l~~~~i~lPp  494 (638)
T PRK11388        423 EKVEYLSPELQSALLQVLKTGVITR--LDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYALHAFEITIPP  494 (638)
T ss_pred             cChhhCCHHHHHHHHHHHhcCcEEe--CCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhhhceeEEeCCC
Confidence            9999999999999999999887753  3555566778999999997511      1122234667888888655444443

>KOG2004|consensus

Probab=99.11  E-value=4.3e-10  Score=123.92  Aligned_cols=171  Identities=20%  Similarity=0.355  Sum_probs=101.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceE-EEeecCcccce-eeeccceeec------CCCeeEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTA-AVMKDPITNEM-VLEGGALVLA------DQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta-~~~~~~~~g~~-~l~~GalvlA------d~gi~~IDE  441 (621)
                      --++|+||||+|||.++|.||+.+.|-.+--..    .|++- +-++.. -..| --.||-++.+      .+-+++|||
T Consensus       439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv----GG~tDvAeIkGH-RRTYVGAMPGkiIq~LK~v~t~NPliLiDE  513 (906)
T KOG2004|consen  439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSV----GGMTDVAEIKGH-RRTYVGAMPGKIIQCLKKVKTENPLILIDE  513 (906)
T ss_pred             cEEEEeCCCCCCcccHHHHHHHHhCCceEEEec----cccccHHhhccc-ceeeeccCChHHHHHHHhhCCCCceEEeeh
Confidence            368999999999999999999999998754211    11221 111111 0011 1235555444      667999999


Q ss_pred             CCCCChhh----hhhhHhhhcc-eEEEEecC--CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        442 FDKLPDAD----RTAIHEVMEQ-QTISIAKA--GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       442 idk~~~~~----~~~L~eame~-q~isi~k~--gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      +||+....    -++|+|+|+- |.-+.--.  .+-..| +++.+|||||-..             .+|+||+||..+ .
T Consensus       514 vDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-SkVLFicTAN~id-------------tIP~pLlDRMEv-I  578 (906)
T KOG2004|consen  514 VDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-SKVLFICTANVID-------------TIPPPLLDRMEV-I  578 (906)
T ss_pred             hhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch-hheEEEEeccccc-------------cCChhhhhhhhe-e
Confidence            99987533    3699999962 22111000  001111 3478999999884             699999999953 3


Q ss_pred             EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH-cC-CCCCCHHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK-GK-NPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar-~~-~p~ls~~a~~~l~~~y~  581 (621)
                      -+..+ ..++-.+||+..|-                    .+....+- .. +..+++.|...|++.|.
T Consensus       579 elsGY-v~eEKv~IA~~yLi--------------------p~a~~~~gl~~e~v~is~~al~~lI~~Yc  626 (906)
T KOG2004|consen  579 ELSGY-VAEEKVKIAERYLI--------------------PQALKDCGLKPEQVKISDDALLALIERYC  626 (906)
T ss_pred             eccCc-cHHHHHHHHHHhhh--------------------hHHHHHcCCCHHhcCccHHHHHHHHHHHH
Confidence            33344 34555667764431                    11111111 01 56788888888888775

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.11  E-value=6.9e-10  Score=122.53  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=94.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.++++.|++||||+.++++++...++..     ..++..+..   ..|++. .+...+|......|.+..|+||+++||
T Consensus       162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~  240 (445)
T TIGR02915       162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY-EKGAFTGAVKQTLGKIEYAHGGTLFLD  240 (445)
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC-CCCCcCCCccCCCCceeECCCCEEEEe
Confidence            45999999999999999999998866421     112221111   001110 011123333446788999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      |++.|+...|..|+.+++++.+.-  .|.....+.++.+|+|+|..-.      .....-.+.+.|+.|+...-+.
T Consensus       241 ~i~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~  308 (445)
T TIGR02915       241 EIGDLPLNLQAKLLRFLQERVIER--LGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISIT  308 (445)
T ss_pred             chhhCCHHHHHHHHHHHhhCeEEe--CCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhccceec
Confidence            999999999999999999987654  3445567788999999987511      1122234677888888543333

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.11  E-value=6.8e-10  Score=128.95  Aligned_cols=198  Identities=16%  Similarity=0.239  Sum_probs=123.7

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.||||.|+|||||+.+|++++..+++..     +.+...+..   ..+++. .....+|...-..|.+-.|++|++||
T Consensus       398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~le~a~~GtL~L  476 (686)
T PRK15429        398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH-ERGAFTGASAQRIGRFELADKSSLFL  476 (686)
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCc-ccccccccccchhhHHHhcCCCeEEE
Confidence            456999999999999999999998876421     122221110   011211 01111232233457778899999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.++.+.|..|+.+++++.+.-  .|.....+.++.+|||+|..-.      .....-.+...|+.|+...-+.+++
T Consensus       477 dei~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~~L~~~l~~~~i~lPp  548 (686)
T PRK15429        477 DEVGDMPLELQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATNRDLK------KMVADREFRSDLYYRLNVFPIHLPP  548 (686)
T ss_pred             echhhCCHHHHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCCCCHH------HHHHcCcccHHHHhccCeeEEeCCC
Confidence            9999999999999999999887654  3545566778999999987511      1223335778899998655444433


Q ss_pred             CCh-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        520 PDR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       520 ~d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                      ..+ .+|. .++++.                     ++++   +++.   .+.+++++.+.|..+             .+
T Consensus       549 LreR~~Di~~L~~~~---------------------l~~~---~~~~~~~~~~~s~~al~~L~~y-------------~W  591 (686)
T PRK15429        549 LRERPEDIPLLVKAF---------------------TFKI---ARRMGRNIDSIPAETLRTLSNM-------------EW  591 (686)
T ss_pred             hhhhHhHHHHHHHHH---------------------HHHH---HHHcCCCCCCcCHHHHHHHHhC-------------CC
Confidence            222 1221 223332                     2222   2222   245788887777654             45


Q ss_pred             ccCHHHHHHHHHHHHHH
Q psy11213        595 YTSARNLLAILRLSTAL  611 (621)
Q Consensus       595 ~~t~R~leslirla~A~  611 (621)
                      +-++|+|+++++-+-..
T Consensus       592 PGNvrEL~~~i~~a~~~  608 (686)
T PRK15429        592 PGNVRELENVIERAVLL  608 (686)
T ss_pred             CCcHHHHHHHHHHHHHh
Confidence            66788888877766543

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.10  E-value=4.6e-10  Score=125.97  Aligned_cols=195  Identities=15%  Similarity=0.199  Sum_probs=118.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccE--E---ecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQ--Y---TTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~--~---~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||.|++||||+.+|++++..+++..  |   .+...+..   ..|++.. ....+|...-..|.+-.|++|++|||
T Consensus       227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~-~~~~~~~~~~~~g~~e~a~~GtL~Ld  305 (520)
T PRK10820        227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHA-PGAYPNALEGKKGFFEQANGGSVLLD  305 (520)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCC-CCCcCCcccCCCChhhhcCCCEEEEe
Confidence            45999999999999999999988765531  1   11211110   0112110 00011211234677778999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.|++..|..|+.+++++++.-  .|.....+.++.||+|++..-.      ...+.-.+.+.|+.|+....+..++.
T Consensus       306 eI~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~vRiI~st~~~l~------~l~~~g~f~~dL~~rL~~~~i~lPpL  377 (520)
T PRK10820        306 EIGEMSPRMQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQKNLV------ELVQKGEFREDLYYRLNVLTLNLPPL  377 (520)
T ss_pred             ChhhCCHHHHHHHHHHHhcCCccc--CCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHhhcCeeEEeCCCc
Confidence            999999999999999999887533  3544555677889998875410      12233357788999986544444433


Q ss_pred             Ch-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213        521 DR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMSY  595 (621)
Q Consensus       521 d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~  595 (621)
                      .+ ..|. .++++.+                     +++   +++.   .|.+++++.+.|..+             .++
T Consensus       378 reR~~Di~~L~~~fl---------------------~~~---~~~~g~~~~~ls~~a~~~L~~y-------------~WP  420 (520)
T PRK10820        378 RDRPQDIMPLTELFV---------------------ARF---ADEQGVPRPKLAADLNTVLTRY-------------GWP  420 (520)
T ss_pred             ccChhHHHHHHHHHH---------------------HHH---HHHcCCCCCCcCHHHHHHHhcC-------------CCC
Confidence            22 2232 2333332                     222   2222   457888887777653             355


Q ss_pred             cCHHHHHHHHHHHH
Q psy11213        596 TSARNLLAILRLST  609 (621)
Q Consensus       596 ~t~R~leslirla~  609 (621)
                      -++|+|++++.-|-
T Consensus       421 GNvreL~nvl~~a~  434 (520)
T PRK10820        421 GNVRQLKNAIYRAL  434 (520)
T ss_pred             CHHHHHHHHHHHHH
Confidence            56777776665443

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.1e-10  Score=117.98  Aligned_cols=129  Identities=23%  Similarity=0.312  Sum_probs=84.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKL-  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~-  445 (621)
                      .|||+||||||||.|||++|+.....+.-         +.++-.....-|+- .+.-..+.+|   ...|+||||||.+ 
T Consensus       187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIr---------vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg  257 (406)
T COG1222         187 GVLLYGPPGTGKTLLAKAVANQTDATFIR---------VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG  257 (406)
T ss_pred             ceEeeCCCCCcHHHHHHHHHhccCceEEE---------eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence            79999999999999999999984432211         11110001001110 0111122233   2489999999974 


Q ss_pred             ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                                ..+.|..|+|.+.|-      +|-..  ..++-||||+|...             -|+||||+  ||| .
T Consensus       258 ~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~D-R  315 (406)
T COG1222         258 AKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFD-R  315 (406)
T ss_pred             cccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCccc-c
Confidence                      344677888888762      23221  34578999999873             59999998  999 7


Q ss_pred             EEecCCCChHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~  530 (621)
                      .+.++.||.+...+|.+
T Consensus       316 kIEfplPd~~gR~~Il~  332 (406)
T COG1222         316 KIEFPLPDEEGRAEILK  332 (406)
T ss_pred             eeecCCCCHHHHHHHHH
Confidence            77778999998888776

>KOG0734|consensus

Probab=99.09  E-value=1e-10  Score=124.80  Aligned_cols=134  Identities=23%  Similarity=0.331  Sum_probs=86.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCcc--ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSG--VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~--~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      .|||+||||||||.|+|++|..+.-..|. +|.....  +|.-|.-++|-.       +-|-.. -.+|+||||||....
T Consensus       339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF-------~aAk~~-APcIIFIDEiDavG~  410 (752)
T KOG0734|consen  339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLF-------AAAKAR-APCIIFIDEIDAVGG  410 (752)
T ss_pred             ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHH-------HHHHhc-CCeEEEEechhhhcc
Confidence            69999999999999999999998776654 3432221  222222222210       000001 258999999997532


Q ss_pred             ----hhh----hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEec
Q psy11213        448 ----ADR----TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQ  517 (621)
Q Consensus       448 ----~~~----~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~  517 (621)
                          .++    ..|++.+-+    .  +|  ..-|....||||+|-.+             .|++||++  ||| ..+.+
T Consensus       411 kR~~~~~~y~kqTlNQLLvE----m--DG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD-~~v~V  468 (752)
T KOG0734|consen  411 KRNPSDQHYAKQTLNQLLVE----M--DG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFD-RHVTV  468 (752)
T ss_pred             cCCccHHHHHHHHHHHHHHH----h--cC--cCcCCceEEEeccCChh-------------hhhHHhcCCCccc-eeEec
Confidence                222    223332211    1  12  22355688999999774             58999987  999 66778


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy11213        518 DKPDRDNDLKLAQHITY  534 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~  534 (621)
                      +.||..-..+|.++.++
T Consensus       469 p~PDv~GR~eIL~~yl~  485 (752)
T KOG0734|consen  469 PLPDVRGRTEILKLYLS  485 (752)
T ss_pred             CCCCcccHHHHHHHHHh
Confidence            99999999998887765

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.08  E-value=9.1e-10  Score=115.83  Aligned_cols=100  Identities=17%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHh
Q psy11213        426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAA  505 (621)
Q Consensus       426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~a  505 (621)
                      .|.|..|++||+.++|+.|.+.+.+..||.+++++.+.+.  |....++.+..|||++|+.+  |+..    .+....+|
T Consensus       229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e--~~~~----~~~k~~ea  300 (361)
T smart00763      229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESE--WQRF----KSNKKNEA  300 (361)
T ss_pred             cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHH--Hhhh----hccccchh
Confidence            5999999999999999999999999999999999999884  44457778889999999973  1111    11234699


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      |++||. ++-+.-..+...+.+|.+..+.
T Consensus       301 f~dR~~-~i~vpY~l~~~~E~~Iy~k~~~  328 (361)
T smart00763      301 LLDRII-KVKVPYCLRVSEEAQIYEKLLR  328 (361)
T ss_pred             hhhceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence            999994 3333334455677778777764

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.08  E-value=9e-10  Score=128.52  Aligned_cols=182  Identities=14%  Similarity=0.166  Sum_probs=111.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-----ccccceEEEeecCcccceee-eccce----eecCCCeeEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-----SGVGLTAAVMKDPITNEMVL-EGGAL----VLADQGICCID  440 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-----s~~gLta~~~~~~~~g~~~l-~~Gal----vlAd~gi~~ID  440 (621)
                      ++||+||||||||.+++.+++.+......-....     +...+.++.     .|..-. +.|.+    -....+|++||
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~-----~gyvg~~~~~~l~~~~~~~p~~VvllD  560 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP-----PGYVGFEQGGLLTEAVRKHPHCVLLLD  560 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC-----CCCcccchhhHHHHHHHhCCCeEEEEe
Confidence            6899999999999999999999755432211100     000111110     111001 11222    22356899999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC-----C-CCcc----c--ccCCCHhHhc
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP-----K-RSIE----Q--NIQLPAALLS  508 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~-----~-~~~~----~--~~~L~~aLls  508 (621)
                      |++|+.++.++.|+++|+++.++-. .|....+. ++.+|+|+|.....+..     . ....    .  .-.++++|++
T Consensus       561 Eieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~  638 (731)
T TIGR02639       561 EIEKAHPDIYNILLQVMDYATLTDN-NGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN  638 (731)
T ss_pred             chhhcCHHHHHHHHHhhccCeeecC-CCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence            9999999999999999999998754 45444433 58899999985221110     0 0000    0  1237899999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA  579 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~  579 (621)
                      |||-++. ....+.+.-.+|+++.+..                  +.+.+. .+.....+++++.++|++.
T Consensus       639 Rid~Vi~-F~pLs~e~l~~Iv~~~L~~------------------l~~~l~-~~~~~l~i~~~a~~~La~~  689 (731)
T TIGR02639       639 RLDAIIH-FNPLSEEVLEKIVQKFVDE------------------LSKQLN-EKNIKLELTDDAKKYLAEK  689 (731)
T ss_pred             cCCeEEE-cCCCCHHHHHHHHHHHHHH------------------HHHHHH-hCCCeEEeCHHHHHHHHHh
Confidence            9995555 5667777778888766531                  122111 1112567888888888763

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.07  E-value=2e-09  Score=119.64  Aligned_cols=198  Identities=18%  Similarity=0.234  Sum_probs=123.9

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .+.++|+.|++||||+.++++++..+++..     ..++.....   ..|.+. .....+|......|.+..|+||.+||
T Consensus       160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l  238 (469)
T PRK10923        160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH-EKGAFTGANTIRQGRFEQADGGTLFL  238 (469)
T ss_pred             cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC-CCCCCCCCCcCCCCCeeECCCCEEEE
Confidence            456999999999999999999999876521     122211110   001110 01111333345678899999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.++...|..|+.+++++.+.-  .|.....+.++.+|+|+|..-.      ...+.-.+.+.|+.||..+.+..++
T Consensus       239 ~~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~~Pp  310 (469)
T PRK10923        239 DEIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNLE------QRVQEGKFREDLFHRLNVIRVHLPP  310 (469)
T ss_pred             eccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCHH------HHHHcCCchHHHHHHhcceeecCCC
Confidence            9999999999999999999987764  2333445667899999986410      1222335788999999644443333


Q ss_pred             C-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        520 P-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       520 ~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                      . +..+|. .+++|.+.                     ++   +++.   .+.+++++.+.|..+             .+
T Consensus       311 LreR~~Di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~a~~~L~~~-------------~w  353 (469)
T PRK10923        311 LRERREDIPRLARHFLQ---------------------VA---ARELGVEAKLLHPETEAALTRL-------------AW  353 (469)
T ss_pred             cccchhhHHHHHHHHHH---------------------HH---HHHcCCCCCCcCHHHHHHHHhC-------------CC
Confidence            2 222222 23334332                     22   2221   235788877776654             45


Q ss_pred             ccCHHHHHHHHHHHHHH
Q psy11213        595 YTSARNLLAILRLSTAL  611 (621)
Q Consensus       595 ~~t~R~leslirla~A~  611 (621)
                      +-++|+|+++++-+-..
T Consensus       354 pgNv~eL~~~i~~~~~~  370 (469)
T PRK10923        354 PGNVRQLENTCRWLTVM  370 (469)
T ss_pred             CChHHHHHHHHHHHHHh
Confidence            56677777777665443

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.07  E-value=5.6e-10  Score=123.29  Aligned_cols=130  Identities=24%  Similarity=0.241  Sum_probs=83.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC---ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS---SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~---s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      .|||+||||||||.+++++|+.+....+....+.   ..+|-+....     ......+..   ...+|++|||+|++..
T Consensus       261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l-----~~~f~~A~~---~~P~IL~IDEID~~~~  332 (489)
T CHL00195        261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM-----RQMIRIAEA---LSPCILWIDEIDKAFS  332 (489)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH-----HHHHHHHHh---cCCcEEEehhhhhhhc
Confidence            6999999999999999999999766554432211   0111110000     000000111   1368999999998643


Q ss_pred             h------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        448 A------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       448 ~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                      .            ....++..|++.             +.+..||||+|...             .|++++++  |||.+
T Consensus       333 ~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~vIaTTN~~~-------------~Ld~allR~GRFD~~  386 (489)
T CHL00195        333 NSESKGDSGTTNRVLATFITWLSEK-------------KSPVFVVATANNID-------------LLPLEILRKGRFDEI  386 (489)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhcC-------------CCceEEEEecCChh-------------hCCHHHhCCCcCCeE
Confidence            2            123455555431             34578999999773             69999997  99965


Q ss_pred             EEecCCCChHHHHHHHHHHHhh
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      + .++.|+.+...+|.+..+..
T Consensus       387 i-~v~lP~~~eR~~Il~~~l~~  407 (489)
T CHL00195        387 F-FLDLPSLEEREKIFKIHLQK  407 (489)
T ss_pred             E-EeCCcCHHHHHHHHHHHHhh
Confidence            4 56889999999998877653

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.04  E-value=1.6e-09  Score=119.99  Aligned_cols=138  Identities=17%  Similarity=0.281  Sum_probs=93.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc---EE--ecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS---QY--TTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~--~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.++|+.|++||||+.++++++..+++.   .+  .+...+..   ..|++.. ....+|......|.+..|++|+++||
T Consensus       166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld  244 (457)
T PRK11361        166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE-KGAFTGAQTLRQGLFERANEGTLLLD  244 (457)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC-CCCCCCCCCCCCCceEECCCCEEEEe
Confidence            3599999999999999999998876542   11  12211110   0111110 11123444456788999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      |++.++...|..|+.+++.+.+.-  .|.....+.++.||+|+|....      .....-.+.+.|+.|+..+.+
T Consensus       245 ~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~l~------~~~~~g~~~~~l~~~l~~~~i  311 (457)
T PRK11361        245 EIGEMPLVLQAKLLRILQEREFER--IGGHQTIKVDIRIIAATNRDLQ------AMVKEGTFREDLFYRLNVIHL  311 (457)
T ss_pred             chhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcccee
Confidence            999999999999999999887653  4555667788999999997511      112223467788888854333

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.04  E-value=2.1e-09  Score=122.51  Aligned_cols=209  Identities=16%  Similarity=0.146  Sum_probs=125.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----------EEecCCCCc----c--ccceEEEeecC----------ccccee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----------QYTTGRGSS----G--VGLTAAVMKDP----------ITNEMV  423 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----------~~~~g~~~s----~--~gLta~~~~~~----------~~g~~~  423 (621)
                      |++|+||||||||++++.+++...+.           +...+....    .  ..+.+.. .++          .+|...
T Consensus       177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~gl~~  255 (615)
T TIGR02903       177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-HDPIYQGARRDLAETGVPE  255 (615)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcCCCc
Confidence            89999999999999999998765311           111121110    0  0111111 000          012223


Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe---------------EEecCCcceEEeecCCCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI---------------MTRLNARVSILAAANPAYG  488 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi---------------~~~l~ar~~viAa~Np~~g  488 (621)
                      ...|.+..+++|++||||++.|++..+..|+.+|+++++.+.....               ....++++.+++|++... 
T Consensus       256 ~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~-  334 (615)
T TIGR02903       256 PKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP-  334 (615)
T ss_pred             hhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc-
Confidence            4567777889999999999999999999999999998876642210               112345567776664431 


Q ss_pred             CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213        489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTV  568 (621)
Q Consensus       489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l  568 (621)
                                 ..++++|.|||..+  .....+.++-..|+++.+...         ...++.+.++....|++.   . 
T Consensus       335 -----------~~l~~aLrSR~~~i--~~~pls~edi~~Il~~~a~~~---------~v~ls~eal~~L~~ys~~---g-  388 (615)
T TIGR02903       335 -----------EEINPALRSRCAEV--FFEPLTPEDIALIVLNAAEKI---------NVHLAAGVEELIARYTIE---G-  388 (615)
T ss_pred             -----------cccCHHHHhceeEE--EeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHCCCc---H-
Confidence                       14789999999643  345567777778888766421         123566655555555431   1 


Q ss_pred             CHHHHHHHHHHHHHHHHHhh---cCCCCCccCHHHHHHHHHHH
Q psy11213        569 PSSLTEHIVKAYTELRKVAR---NSRDMSYTSARNLLAILRLS  608 (621)
Q Consensus       569 s~~a~~~l~~~y~~lR~~~~---~~~~~~~~t~R~leslirla  608 (621)
                       ..+.+.|...|...+....   .......++...++..++.+
T Consensus       389 -Rraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~  430 (615)
T TIGR02903       389 -RKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS  430 (615)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence             3555666666544322211   11123457777777766554

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>KOG0738|consensus

Probab=99.01  E-value=4.9e-10  Score=115.99  Aligned_cols=160  Identities=18%  Similarity=0.229  Sum_probs=96.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      .|||+||||||||+|||++|....-.+|.    .|+.-|+.. .+.. +-..+  -=.+-+|   -..++||||||.+-.
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFN----VSsstltSK-wRGe-SEKlv--RlLFemARfyAPStIFiDEIDslcs  318 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFN----VSSSTLTSK-WRGE-SEKLV--RLLFEMARFYAPSTIFIDEIDSLCS  318 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEE----echhhhhhh-hccc-hHHHH--HHHHHHHHHhCCceeehhhHHHHHh
Confidence            79999999999999999999985433332    111112211 1110 00000  0000111   257999999998522


Q ss_pred             ------------hhhhhhHhhhcceEEEEecCCeEEecC--CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        448 ------------ADRTAIHEVMEQQTISIAKAGIMTRLN--ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       448 ------------~~~~~L~eame~q~isi~k~gi~~~l~--ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                                  ...+.|+--|+         |...++.  ..+.|+||+|-.+             +|++||++||. -
T Consensus       319 ~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~VmVLAATN~PW-------------diDEAlrRRlE-K  375 (491)
T KOG0738|consen  319 QRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVVMVLAATNFPW-------------DIDEALRRRLE-K  375 (491)
T ss_pred             cCCCccchhHHHHHHHHHHHHhh---------ccccccccceeEEEEeccCCCc-------------chHHHHHHHHh-h
Confidence                        12234444453         3333332  3488999999885             79999999995 7


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCC-----CCCCCCCHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPP-----TELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~-----~~~~~i~~~~lr~~i~~a  561 (621)
                      .+.+..||.+....+.+..+..........     ...+.++-++++..++.|
T Consensus       376 RIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA  428 (491)
T KOG0738|consen  376 RIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA  428 (491)
T ss_pred             heeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence            788899999999999987765432211100     123445666666666554

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.00  E-value=3.8e-09  Score=124.45  Aligned_cols=207  Identities=22%  Similarity=0.200  Sum_probs=126.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC-----CccccceEEEeecCcccce-eeeccceeec----CCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG-----SSGVGLTAAVMKDPITNEM-VLEGGALVLA----DQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~-----~s~~gLta~~~~~~~~g~~-~l~~GalvlA----d~gi~  437 (621)
                      .+||+||||+|||.+++++++.+-.   .....+..     .+...|.++     ..|.. .-+.|.|..+    ..+|+
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~-----~~gyvg~~~~g~L~~~v~~~p~svv  672 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS-----PPGYVGYGEGGVLTEAVRRKPYSVV  672 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC-----CCCcccccccchHHHHHHhCCCcEE
Confidence            5899999999999999999998621   11111100     000011111     01111 0133443322    56899


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC-----C-----CCcccc------cC
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP-----K-----RSIEQN------IQ  501 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~-----~-----~~~~~~------~~  501 (621)
                      +||||+|+.++.++.|+++|+++.++.. .|....+. ++.+|.|+|-..+.|..     .     ......      -.
T Consensus       673 llDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (852)
T TIGR03345       673 LLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKV  750 (852)
T ss_pred             EEechhhcCHHHHHHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999865 56666655 58999999975433211     1     000111      13


Q ss_pred             CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHH
Q psy11213        502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG--KNPTVPSSLTEHIVKA  579 (621)
Q Consensus       502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~--~~p~ls~~a~~~l~~~  579 (621)
                      ++++|++|+| + +.+...+.+.-.+|+...+...                 .++   ++++  ....+++++.++|.+.
T Consensus       751 f~PEflnRi~-i-I~F~pLs~e~l~~Iv~~~L~~l-----------------~~r---l~~~~gi~l~i~d~a~~~La~~  808 (852)
T TIGR03345       751 FKPAFLGRMT-V-IPYLPLDDDVLAAIVRLKLDRI-----------------ARR---LKENHGAELVYSEALVEHIVAR  808 (852)
T ss_pred             ccHHHhccee-E-EEeCCCCHHHHHHHHHHHHHHH-----------------HHH---HHHhcCceEEECHHHHHHHHHH
Confidence            8999999998 3 4556778888788887654311                 111   2222  2467899999988875


Q ss_pred             HHHHHHHhhcCCCCCccCHHHHHHHHH--HHHHHHHhcCC
Q psy11213        580 YTELRKVARNSRDMSYTSARNLLAILR--LSTALARLRLC  617 (621)
Q Consensus       580 y~~lR~~~~~~~~~~~~t~R~leslir--la~A~Akl~lr  617 (621)
                      ..           ......|.+..+|+  +..+.|.+-+.
T Consensus       809 g~-----------~~~~GAR~L~r~Ie~~i~~~la~~~l~  837 (852)
T TIGR03345       809 CT-----------EVESGARNIDAILNQTLLPELSRQILE  837 (852)
T ss_pred             cC-----------CCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            21           12235677777764  34445544443

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.99  E-value=4.3e-09  Score=116.74  Aligned_cols=197  Identities=18%  Similarity=0.220  Sum_probs=121.4

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      .++++++.|++||||+.++++++...++..     ..++.....   ..|.+. .+...+|...-..|.+..|++|++||
T Consensus       156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l  234 (463)
T TIGR01818       156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH-EKGAFTGANTRRQGRFEQADGGTLFL  234 (463)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC-CCCCCCCcccCCCCcEEECCCCeEEE
Confidence            356999999999999999999998876531     122221111   001111 11111233333567888999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ||++.++.+.|..|+++++.+.+..  .|.....+.++.||+|+|....      .....-.+.+.|+.|+..+-+..++
T Consensus       235 ~ei~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPp  306 (463)
T TIGR01818       235 DEIGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQNLE------ALVRQGKFREDLFHRLNVIRIHLPP  306 (463)
T ss_pred             EchhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCCHH------HHHHcCCcHHHHHHHhCcceecCCC
Confidence            9999999999999999999988765  3444455667889999987510      1122234677899998654444433


Q ss_pred             CC-h-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        520 PD-R-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       520 ~d-~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                      .. . +.-..+++|.+.                     ++   +++.   .+.+++++.+.|..+             .+
T Consensus       307 Lr~R~~Di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~a~~~L~~~-------------~w  349 (463)
T TIGR01818       307 LRERREDIPRLARHFLA---------------------LA---ARELDVEPKLLDPEALERLKQL-------------RW  349 (463)
T ss_pred             cccchhhHHHHHHHHHH---------------------HH---HHHhCCCCCCcCHHHHHHHHhC-------------CC
Confidence            32 2 222334444432                     21   1211   246777777777654             34


Q ss_pred             ccCHHHHHHHHHHHHH
Q psy11213        595 YTSARNLLAILRLSTA  610 (621)
Q Consensus       595 ~~t~R~leslirla~A  610 (621)
                      +-++|+|.++++-+-.
T Consensus       350 pgNvreL~~~~~~~~~  365 (463)
T TIGR01818       350 PGNVRQLENLCRWLTV  365 (463)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            5566777766665544

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.99  E-value=2.1e-09  Score=116.45  Aligned_cols=133  Identities=23%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP-  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~-  446 (621)
                      +|||+||||||||++++++++.+....+.....    .+..... .  .+...+ ...+-.|   ..+|+||||+|.+. 
T Consensus       167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~----~l~~~~~-g--~~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~  238 (389)
T PRK03992        167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS----ELVQKFI-G--EGARLV-RELFELAREKAPSIIFIDEIDAIAA  238 (389)
T ss_pred             ceEEECCCCCChHHHHHHHHHHhCCCEEEeehH----HHhHhhc-c--chHHHH-HHHHHHHHhcCCeEEEEechhhhhc
Confidence            799999999999999999999876544321100    0110000 0  001100 0111111   35799999999873 


Q ss_pred             ----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        447 ----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       447 ----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                ...+..+.+.+.+-.      |..  -..++.||||+|...             .+++++++  |||. .
T Consensus       239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~-~  296 (389)
T PRK03992        239 KRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATNRID-------------ILDPAILRPGRFDR-I  296 (389)
T ss_pred             ccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecCChh-------------hCCHHHcCCccCce-E
Confidence                      223344555443211      110  123578999999763             58899996  9995 4


Q ss_pred             EecCCCChHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il  533 (621)
                      +.++.|+.+...+|.+..+
T Consensus       297 I~v~~P~~~~R~~Il~~~~  315 (389)
T PRK03992        297 IEVPLPDEEGRLEILKIHT  315 (389)
T ss_pred             EEECCCCHHHHHHHHHHHh
Confidence            6778899999998887654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.98  E-value=1.7e-09  Score=126.19  Aligned_cols=175  Identities=14%  Similarity=0.174  Sum_probs=113.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeecc-ce---eecCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-AL---VLADQG  435 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-al---vlAd~g  435 (621)
                      -|++|+||||||||.+++.+++.+-.          .++....+    .+.+...   ..|+|.-.-. .+   ....+.
T Consensus       204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----~l~a~~~---~~g~~e~~l~~i~~~~~~~~~~  276 (731)
T TIGR02639       204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----SLLAGTK---YRGDFEERLKAVVSEIEKEPNA  276 (731)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----HHhhhcc---ccchHHHHHHHHHHHHhccCCe
Confidence            39999999999999999999987521          11211100    0111100   1122211000 01   012357


Q ss_pred             eeEecCCCCCCh---------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        436 ICCIDEFDKLPD---------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       436 i~~IDEidk~~~---------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      |+||||++.+..         +..+.|..+|+.+.               ..+|||+|+.+        +...+..+++|
T Consensus       277 ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e--------~~~~~~~d~al  333 (731)
T TIGR02639       277 ILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK---------------LRCIGSTTYEE--------YKNHFEKDRAL  333 (731)
T ss_pred             EEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC---------------eEEEEecCHHH--------HHHHhhhhHHH
Confidence            999999998742         23455666666543               46799999852        33335789999


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~  581 (621)
                      .+||.  .+.+..|+.++..+|.+.+...+...     ..-.++.+.+...+..+.++  .-.+++.|.+.+-+...
T Consensus       334 ~rRf~--~i~v~~p~~~~~~~il~~~~~~~e~~-----~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a  403 (731)
T TIGR02639       334 SRRFQ--KIDVGEPSIEETVKILKGLKEKYEEF-----HHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA  403 (731)
T ss_pred             HHhCc--eEEeCCCCHHHHHHHHHHHHHHHHhc-----cCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence            99996  46778889999999999876543211     12368899999999999887  55689999998876554

>PRK15115 response regulator GlrR; Provisional

Probab=98.97  E-value=2.4e-09  Score=118.16  Aligned_cols=139  Identities=17%  Similarity=0.268  Sum_probs=94.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.++++.|++||||+.+++++++..++..     ..++..+..   ..|++. .+...+|......|.+-.|++|++|||
T Consensus       157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~  235 (444)
T PRK15115        157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLD  235 (444)
T ss_pred             CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC-CcCCCCCCccCCCCcEEECCCCEEEEE
Confidence            45999999999999999999999876521     122211110   011111 111224444556788999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      |++.++.+.|..|+.+++++.+.-  .|.....+.++.+|+|+|..-      ......-.+.+.|+.|+...-+.
T Consensus       236 ~i~~l~~~~q~~L~~~l~~~~~~~--~g~~~~~~~~~rii~~~~~~l------~~~~~~~~f~~~l~~~l~~~~i~  303 (444)
T PRK15115        236 EIGDMPAPLQVKLLRVLQERKVRP--LGSNRDIDIDVRIISATHRDL------PKAMARGEFREDLYYRLNVVSLK  303 (444)
T ss_pred             ccccCCHHHHHHHHHHHhhCCEEe--CCCCceeeeeEEEEEeCCCCH------HHHHHcCCccHHHHHhhceeeec
Confidence            999999999999999999987743  455556677899999998531      01122235677788887544333

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.95  E-value=3.8e-09  Score=114.04  Aligned_cols=135  Identities=20%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE------Ee-cCCCCccccceEEEeecCcccceeeeccce----eec-----CC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ------YT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL----VLA-----DQ  434 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~------~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal----vlA-----d~  434 (621)
                      |++|+|+||||||++++.++..+....      .+ -....+...+....  .+....+...+|.+    ..|     .+
T Consensus       196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~--rP~~vgy~~~~G~f~~~~~~A~~~p~~~  273 (459)
T PRK11331        196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY--RPNGVGFRRKDGIFYNFCQQAKEQPEKK  273 (459)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc--CCCCCCeEecCchHHHHHHHHHhcccCC
Confidence            999999999999999999998753210      11 11111111111111  11123355566643    112     35


Q ss_pred             CeeEecCCCCCChh-hhhhhHhhhcce------EEEE--ec-CCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH
Q psy11213        435 GICCIDEFDKLPDA-DRTAIHEVMEQQ------TISI--AK-AGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA  504 (621)
Q Consensus       435 gi~~IDEidk~~~~-~~~~L~eame~q------~isi--~k-~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~  504 (621)
                      .+++|||+|+.+.+ .-..+..+||.+      .+.+  +. .+....+|.++.||||+|....      ++   ..++.
T Consensus       274 ~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr------s~---~~lD~  344 (459)
T PRK11331        274 YVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADR------SL---AVVDY  344 (459)
T ss_pred             cEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcccc------ch---hhccH
Confidence            79999999999855 356778888853      1222  12 2345678999999999998731      11   24899


Q ss_pred             hHhccccEEEEe
Q psy11213        505 ALLSRFDLLWLI  516 (621)
Q Consensus       505 aLlsRFDli~~~  516 (621)
                      ||++||..+-+.
T Consensus       345 AlrRRF~fi~i~  356 (459)
T PRK11331        345 ALRRRFSFIDIE  356 (459)
T ss_pred             HHHhhhheEEec
Confidence            999999544444

>KOG2028|consensus

Probab=98.95  E-value=1.5e-09  Score=111.45  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=87.9

Q ss_pred             eeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEE--e--cCCCCccccceEEEeecC---ccccee
Q psy11213        351 SGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQY--T--TGRGSSGVGLTAAVMKDP---ITNEMV  423 (621)
Q Consensus       351 ~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~--~--~g~~~s~~gLta~~~~~~---~~g~~~  423 (621)
                      .|++..++..+      .--.++|+||||||||+|++.+++.+...-|  +  +...+...     -.++.   ...+..
T Consensus       150 ~gllrs~ieq~------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~-----dvR~ife~aq~~~~  218 (554)
T KOG2028|consen  150 DGLLRSLIEQN------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTN-----DVRDIFEQAQNEKS  218 (554)
T ss_pred             chHHHHHHHcC------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchH-----HHHHHHHHHHHHHh
Confidence            46666555443      1226899999999999999999988654321  1  11111100     00110   001111


Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQ  501 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~  501 (621)
                            ....+-|+||||+++.+...|..++...|.+.|.+               |+|+  ||.             +.
T Consensus       219 ------l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~l---------------IGATTENPS-------------Fq  264 (554)
T KOG2028|consen  219 ------LTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITL---------------IGATTENPS-------------FQ  264 (554)
T ss_pred             ------hhcceeEEEeHHhhhhhhhhhhcccceeccCceEE---------------EecccCCCc-------------cc
Confidence                  11235699999999999999999999999988765               3333  777             47


Q ss_pred             CCHhHhccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213        502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      |..||+||+ .+|++ .....+.-..|..+-+..
T Consensus       265 ln~aLlSRC-~VfvL-ekL~~n~v~~iL~raia~  296 (554)
T KOG2028|consen  265 LNAALLSRC-RVFVL-EKLPVNAVVTILMRAIAS  296 (554)
T ss_pred             hhHHHHhcc-ceeEe-ccCCHHHHHHHHHHHHHh
Confidence            999999999 45554 555566666666665543

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.94  E-value=1e-08  Score=121.55  Aligned_cols=198  Identities=14%  Similarity=0.158  Sum_probs=118.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCC-Cc---cccceEEEeecCcccceee-ecccee----ecCCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRG-SS---GVGLTAAVMKDPITNEMVL-EGGALV----LADQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~-~s---~~gLta~~~~~~~~g~~~l-~~Galv----lAd~gi~  437 (621)
                      .+||+||||||||.+++++++.+...   . +..... ..   ...|.++.     .|..-. +.|.+.    .....|+
T Consensus       597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~-----~g~~g~~~~g~l~~~v~~~p~~vl  671 (852)
T TIGR03346       597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP-----PGYVGYEEGGQLTEAVRRKPYSVV  671 (852)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC-----CCccCcccccHHHHHHHcCCCcEE
Confidence            69999999999999999999975321   1 111000 00   00011110     111111 123322    1234699


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC---C---CCcc------cccCCCHh
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP---K---RSIE------QNIQLPAA  505 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~---~---~~~~------~~~~L~~a  505 (621)
                      ++|||++++++.++.|+++|+++.++.. .|....+. ++.||+|+|-....+..   .   ....      -.-.+.+.
T Consensus       672 llDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe  749 (852)
T TIGR03346       672 LFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE  749 (852)
T ss_pred             EEeccccCCHHHHHHHHHHHhcCceecC-CCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence            9999999999999999999999998864 45555543 48899999974321111   0   0011      11248899


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      |+.|+|-+++. .+++.+.-..|+...+.                  .+.+.+. .+.....+++++.++|.+.-.    
T Consensus       750 l~~Rid~IivF-~PL~~e~l~~I~~l~L~------------------~l~~~l~-~~~~~l~i~~~a~~~L~~~~~----  805 (852)
T TIGR03346       750 FLNRIDEIVVF-HPLGREQIARIVEIQLG------------------RLRKRLA-ERKITLELSDAALDFLAEAGY----  805 (852)
T ss_pred             HhcCcCeEEec-CCcCHHHHHHHHHHHHH------------------HHHHHHH-HCCCeecCCHHHHHHHHHhCC----
Confidence            99999955544 56677777777776543                  2232221 112257889999998876410    


Q ss_pred             HhhcCCCCCccCHHHHHHHHH
Q psy11213        586 VARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       586 ~~~~~~~~~~~t~R~leslir  606 (621)
                             ......|.|..+++
T Consensus       806 -------~~~~gaR~L~~~i~  819 (852)
T TIGR03346       806 -------DPVYGARPLKRAIQ  819 (852)
T ss_pred             -------CCCCCchhHHHHHH
Confidence                   12245676666654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.93  E-value=1.3e-08  Score=120.17  Aligned_cols=181  Identities=12%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC--C---ccccceEEEeecCcccceee-eccce----eecCCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG--S---SGVGLTAAVMKDPITNEMVL-EGGAL----VLADQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~--~---s~~gLta~~~~~~~~g~~~l-~~Gal----vlAd~gi~  437 (621)
                      .+||+||||+|||.|++.+|+.+-.   .....+..  .   +...|.++     ..|.... +.|.|    -....+|+
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~-----~~gyvg~~~~~~l~~~~~~~p~~Vv  615 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS-----PPGYVGYNEGGQLTEAVRKKPYTVV  615 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC-----CCcccCcCccchHHHHHHhCCCeEE
Confidence            5899999999999999999997521   11111100  0   00001111     0111001 12222    22234799


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC---------CCCCCC------Cc---cc-
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG---------RYNPKR------SI---EQ-  498 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g---------~~~~~~------~~---~~-  498 (621)
                      ++||++|+.++.++.|+++||++.++.. .|....+ .++.+|.|+|....         .|....      .+   .. 
T Consensus       616 llDeieka~~~v~~~Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~  693 (821)
T CHL00095        616 LFDEIEKAHPDIFNLLLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNL  693 (821)
T ss_pred             EECChhhCCHHHHHHHHHHhccCceecC-CCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHH
Confidence            9999999999999999999999999876 3665555 36999999997522         122111      00   00 


Q ss_pred             -----ccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHH
Q psy11213        499 -----NIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSL  572 (621)
Q Consensus       499 -----~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a  572 (621)
                           .-.++|.|++|+|-+++. .+.+.+.-.+|++..++.                  +.+-+  ..+ ....+++++
T Consensus       694 ~~~~~~~~f~peflnRid~ii~F-~pL~~~~l~~Iv~~~l~~------------------l~~rl--~~~~i~l~~~~~~  752 (821)
T CHL00095        694 VNEELKQFFRPEFLNRLDEIIVF-RQLTKNDVWEIAEIMLKN------------------LFKRL--NEQGIQLEVTERI  752 (821)
T ss_pred             HHHHHHHhcCHHHhccCCeEEEe-CCCCHHHHHHHHHHHHHH------------------HHHHH--HHCCcEEEECHHH
Confidence                 013789999999955554 556667777777766531                  11111  222 267789999


Q ss_pred             HHHHHHH
Q psy11213        573 TEHIVKA  579 (621)
Q Consensus       573 ~~~l~~~  579 (621)
                      .++|.+.
T Consensus       753 ~~~La~~  759 (821)
T CHL00095        753 KTLLIEE  759 (821)
T ss_pred             HHHHHHh
Confidence            8888764

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.91  E-value=5.4e-09  Score=113.04  Aligned_cols=134  Identities=24%  Similarity=0.298  Sum_probs=79.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee---cCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL---ADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl---Ad~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+.... +.   +.... ..  .+...+. -.+-.   ...+|+||||+|.+..
T Consensus       181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~-s~---l~~k~-~g--e~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~  252 (398)
T PTZ00454        181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG-SE---FVQKY-LG--EGPRMVR-DVFRLARENAPSIIFIDEVDSIAT  252 (398)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh-HH---HHHHh-cc--hhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence            79999999999999999999986554432110 00   00000 00  0000000 00001   1357999999998632


Q ss_pred             -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                 ..+..+.+.+.+-      .|..  -..++.||+|+|...             .|++++++  |||-. 
T Consensus       253 ~r~~~~~~~d~~~~r~l~~LL~~l------d~~~--~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~-  310 (398)
T PTZ00454        253 KRFDAQTGADREVQRILLELLNQM------DGFD--QTTNVKVIMATNRAD-------------TLDPALLRPGRLDRK-  310 (398)
T ss_pred             ccccccCCccHHHHHHHHHHHHHh------hccC--CCCCEEEEEecCCch-------------hCCHHHcCCCcccEE-
Confidence                       1223344444321      1110  123567899999763             68999997  99955 


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +.++.|+.+....|.+..+.
T Consensus       311 I~~~~P~~~~R~~Il~~~~~  330 (398)
T PTZ00454        311 IEFPLPDRRQKRLIFQTITS  330 (398)
T ss_pred             EEeCCcCHHHHHHHHHHHHh
Confidence            56689999988888886654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.91  E-value=5.9e-09  Score=113.72  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=72.8

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEE----ecCCCCcc----ccceEEE-eecCc--ccc---eeeeccceee---cCC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGSSG----VGLTAAV-MKDPI--TNE---MVLEGGALVL---ADQ  434 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~s~----~gLta~~-~~~~~--~g~---~~l~~Galvl---Ad~  434 (621)
                      +||+||||||||++++.+++.+.....    .+|.-.+-    .|....+ ..++.  .|.   ..+...+...   ...
T Consensus        43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~  122 (484)
T PRK14956         43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY  122 (484)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCC
Confidence            799999999999999999998654211    11100000    0000000 01110  000   0010111111   123


Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      -|++|||+++|+.+.+++|+..||+-             +..+.+| ||.++.              .|+++++||+- .
T Consensus       123 KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~viFILaTte~~--------------kI~~TI~SRCq-~  174 (484)
T PRK14956        123 KVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIVFILATTEFH--------------KIPETILSRCQ-D  174 (484)
T ss_pred             EEEEEechhhcCHHHHHHHHHHhhcC-------------CCceEEEeecCChh--------------hccHHHHhhhh-e
Confidence            49999999999999999999999862             2234444 444443              69999999983 4


Q ss_pred             EEecCCCChHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il  533 (621)
                      |.+. ..+.+.-....++++
T Consensus       175 ~~f~-~ls~~~i~~~L~~i~  193 (484)
T PRK14956        175 FIFK-KVPLSVLQDYSEKLC  193 (484)
T ss_pred             eeec-CCCHHHHHHHHHHHH
Confidence            4433 333333334444443

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.91  E-value=7.2e-09  Score=121.10  Aligned_cols=154  Identities=19%  Similarity=0.250  Sum_probs=111.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC--CCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG--RGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g--~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~  445 (621)
                      -++||.|.||+|||.|+.++|+.......-..  ..+.-..|.|+-.--...|++.+...++..|  +||.+++||++.+
T Consensus      1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271        1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred             CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence            48999999999999999999998544321111  1122234555544333568887776666555  8999999999999


Q ss_pred             ChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        446 PDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       446 ~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +.++...|...++. +..-|..-.++...+.++.|.||-||...       -.+.-.||.+++.||  .++..|-...+.
T Consensus      1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q-------ggGRKgLPkSF~nRF--svV~~d~lt~dD 1694 (4600)
T COG5271        1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ-------GGGRKGLPKSFLNRF--SVVKMDGLTTDD 1694 (4600)
T ss_pred             HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc-------CCCcccCCHHHhhhh--heEEecccccch
Confidence            99999999999986 44566666677888899999999999731       112247999999999  445556666666


Q ss_pred             HHHHHHHH
Q psy11213        525 DLKLAQHI  532 (621)
Q Consensus       525 d~~ia~~i  532 (621)
                      -..||.+.
T Consensus      1695 i~~Ia~~~ 1702 (4600)
T COG5271        1695 ITHIANKM 1702 (4600)
T ss_pred             HHHHHHhh
Confidence            66667665

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.91  E-value=1.1e-08  Score=112.83  Aligned_cols=136  Identities=17%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.++++.|++||||+.++++++...++..     ..++.....   ..|++. .....+|.-.-..|.+..|++|++|||
T Consensus       162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~ld  240 (441)
T PRK10365        162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLD  240 (441)
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC-CCCCcCCCCcCCCCceeECCCCEEEEe
Confidence            35899999999999999999998766431     222221111   001111 011112222345788999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      |++.|++..|..|+.+++.+.+.-  .|.....+.++.+|+|++....      .....-.+...|+.|+...
T Consensus       241 ei~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~l~~~  305 (441)
T PRK10365        241 EIGDISPMMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYRLNVV  305 (441)
T ss_pred             ccccCCHHHHHHHHHHHccCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhccc
Confidence            999999999999999999988654  4555566777889999876411      1112234677888887533

>KOG0745|consensus

Probab=98.91  E-value=4.2e-10  Score=117.79  Aligned_cols=135  Identities=19%  Similarity=0.284  Sum_probs=92.8

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      ...||||+||.|+|||.|++.+|+.+.-.+..++-.+ +.+|..+--+..-...-..-..+.+-.|..||+||||+||+.
T Consensus       225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~  304 (564)
T KOG0745|consen  225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT  304 (564)
T ss_pred             ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence            5679999999999999999999999876665554332 333333311100000111112345667789999999999975


Q ss_pred             --------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCCCCCcccccCCCHhHhcc
Q psy11213        447 --------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       447 --------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                                    +..|.+|+..+|--.+.+.+.|.....+-....|-|+|-.   .|.|         .+|...+-+|
T Consensus       305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF---------~~Ldk~I~rR  375 (564)
T KOG0745|consen  305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAF---------VGLDKIISRR  375 (564)
T ss_pred             ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccc---------cchHHHHHHh
Confidence                          4468899999999888997777767777778888888875   4555         2555555555


Q ss_pred             cc
Q psy11213        510 FD  511 (621)
Q Consensus       510 FD  511 (621)
                      .|
T Consensus       376 ~~  377 (564)
T KOG0745|consen  376 LD  377 (564)
T ss_pred             hc
Confidence            54

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.91  E-value=5.4e-10  Score=101.33  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=72.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      |||+||||||||++++.+++.+...++........   .+-+....     ..+.-++..  .+..+|++|||+|.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i-----~~~~~~~~~--~~~~~vl~iDe~d~l~~~   73 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI-----RDFFKKAKK--SAKPCVLFIDEIDKLFPK   73 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH-----HHHHHHHHH--TSTSEEEEEETGGGTSHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc-----ccccccccc--cccceeeeeccchhcccc
Confidence            69999999999999999999976544322111100   00000000     000000000  002589999999999887


Q ss_pred             h-----------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh-ccccEEEEe
Q psy11213        449 D-----------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL-SRFDLLWLI  516 (621)
Q Consensus       449 ~-----------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl-sRFDli~~~  516 (621)
                      .           ...|+..|+...          ..+.++.+|+|+|...             .++++++ +|||-.+.+
T Consensus        74 ~~~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~  130 (132)
T PF00004_consen   74 SQPSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF  130 (132)
T ss_dssp             CSTSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred             cccccccccccccceeeecccccc----------cccccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence            6           567777776421          0145689999999863             6999999 999866543

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.91  E-value=6.6e-09  Score=116.21  Aligned_cols=131  Identities=26%  Similarity=0.307  Sum_probs=80.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC-CC--CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RG--SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~--~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+... ..  ....|.+....++    -  ++. + .....+|+||||+|.+..
T Consensus        90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~----~--f~~-a-~~~~p~Il~iDEid~l~~  161 (495)
T TIGR01241        90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRD----L--FEQ-A-KKNAPCIIFIDEIDAVGR  161 (495)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHH----H--HHH-H-HhcCCCEEEEechhhhhh
Confidence            7999999999999999999998655443211 10  0001111000000    0  000 0 011348999999998753


Q ss_pred             hhh--------------hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        448 ADR--------------TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       448 ~~~--------------~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      ...              +.++..|+.         .  .-+..+.||||+|...             .|+++|++  |||
T Consensus       162 ~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRfd  217 (495)
T TIGR01241       162 QRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPD-------------VLDPALLRPGRFD  217 (495)
T ss_pred             ccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChh-------------hcCHHHhcCCcce
Confidence            221              223333321         0  0123478999999873             68999997  999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHh
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~  534 (621)
                       ..+.++.|+.+...+|.+..+.
T Consensus       218 -~~i~i~~Pd~~~R~~il~~~l~  239 (495)
T TIGR01241       218 -RQVVVDLPDIKGREEILKVHAK  239 (495)
T ss_pred             -EEEEcCCCCHHHHHHHHHHHHh
Confidence             5577789999999998887654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.90  E-value=1.2e-08  Score=111.65  Aligned_cols=146  Identities=23%  Similarity=0.279  Sum_probs=88.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeec-cceeecCCCeeEecCCCCCChhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG-GALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~-GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      |++|+||||||||++++.+++.+....+.......+.  .  ..     .++.-.. .......+++++|||+++++...
T Consensus        38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~--~--~i-----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~  108 (413)
T PRK13342         38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGV--K--DL-----REVIEEARQRRSAGRRTILFIDEIHRFNKAQ  108 (413)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccH--H--HH-----HHHHHHHHHhhhcCCceEEEEechhhhCHHH
Confidence            8999999999999999999987654433211111100  0  00     0000000 00112246799999999999999


Q ss_pred             hhhhHhhhcceEEEEecCCeEEecCCcceEEee--cCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHH
Q psy11213        450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAA--ANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK  527 (621)
Q Consensus       450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa--~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~  527 (621)
                      +..|+..||.+++               .+|++  .||.             ..+.++|+|||  ..+....++.+.-..
T Consensus       109 q~~LL~~le~~~i---------------ilI~att~n~~-------------~~l~~aL~SR~--~~~~~~~ls~e~i~~  158 (413)
T PRK13342        109 QDALLPHVEDGTI---------------TLIGATTENPS-------------FEVNPALLSRA--QVFELKPLSEEDIEQ  158 (413)
T ss_pred             HHHHHHHhhcCcE---------------EEEEeCCCChh-------------hhccHHHhccc--eeeEeCCCCHHHHHH
Confidence            9999999987653               33443  3554             35889999999  334455666666666


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        528 LAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       528 ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      +.++.+.....      ....++.+.+...+.++
T Consensus       159 lL~~~l~~~~~------~~i~i~~~al~~l~~~s  186 (413)
T PRK13342        159 LLKRALEDKER------GLVELDDEALDALARLA  186 (413)
T ss_pred             HHHHHHHHhhc------CCCCCCHHHHHHHHHhC
Confidence            67666543210      00245566555555543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.89  E-value=1.1e-08  Score=120.58  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=114.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE---ecCCCC--cccc-ceEEEeecCcccceeeecc-ce---ee-cCCCeeEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY---TTGRGS--SGVG-LTAAVMKDPITNEMVLEGG-AL---VL-ADQGICCI  439 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~---~~g~~~--s~~g-Lta~~~~~~~~g~~~l~~G-al---vl-Ad~gi~~I  439 (621)
                      |++|+||||||||++++.+++.+.....   ..+...  -..| +.+.   ....|+|.-+-. .+   .. ..+.|+||
T Consensus       210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag---~~~~ge~e~~lk~ii~e~~~~~~~~ILfI  286 (852)
T TIGR03345       210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG---ASVKGEFENRLKSVIDEVKASPQPIILFI  286 (852)
T ss_pred             ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc---cccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            9999999999999999999987643210   000000  0000 1110   011233311000 00   00 13569999


Q ss_pred             cCCCCCCh-----hhh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        440 DEFDKLPD-----ADR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       440 DEidk~~~-----~~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ||++.+..     ..+   +.|..+|+.+.               ..+|||+++.+        +..-+.++++|.+||.
T Consensus       287 DEih~l~~~g~~~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e--------~~~~~~~d~AL~rRf~  343 (852)
T TIGR03345       287 DEAHTLIGAGGQAGQGDAANLLKPALARGE---------------LRTIAATTWAE--------YKKYFEKDPALTRRFQ  343 (852)
T ss_pred             eChHHhccCCCccccccHHHHhhHHhhCCC---------------eEEEEecCHHH--------HhhhhhccHHHHHhCe
Confidence            99999853     112   24666666543               46788998752        2233678999999994


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR  584 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR  584 (621)
                        .+.+..|+.+.-..|.+.+.......     ..-.++.+.++..+..+.++  ...+++.|.+.|-+.-...|
T Consensus       344 --~i~v~eps~~~~~~iL~~~~~~~e~~-----~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~  411 (852)
T TIGR03345       344 --VVKVEEPDEETAIRMLRGLAPVLEKH-----HGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA  411 (852)
T ss_pred             --EEEeCCCCHHHHHHHHHHHHHhhhhc-----CCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence              56778999999999977665432211     12458899999999999887  77899999999888654444

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>CHL00176 ftsH cell division protein; Validated

Probab=98.87  E-value=8.5e-09  Score=117.47  Aligned_cols=134  Identities=28%  Similarity=0.369  Sum_probs=79.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||.+++++|..+....+.. +...  ...|..+...++    -+. .+   .....+|+||||+|.+..
T Consensus       218 gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~----lF~-~A---~~~~P~ILfIDEID~l~~  289 (638)
T CHL00176        218 GVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD----LFK-KA---KENSPCIVFIDEIDAVGR  289 (638)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH----HHH-HH---hcCCCcEEEEecchhhhh
Confidence            799999999999999999999865443321 1110  001111000000    000 00   011246999999998732


Q ss_pred             -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                 ..+..|...+.+-      .|.  .-+.++.||||+|...             .++++|++  |||. .
T Consensus       290 ~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIaaTN~~~-------------~LD~ALlRpGRFd~-~  347 (638)
T CHL00176        290 QRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIAATNRVD-------------ILDAALLRPGRFDR-Q  347 (638)
T ss_pred             cccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEEecCchH-------------hhhhhhhccccCce-E
Confidence                       1222333333210      011  1134578999999863             47889986  9995 5


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +..+.|+.+...+|.+..+.
T Consensus       348 I~v~lPd~~~R~~IL~~~l~  367 (638)
T CHL00176        348 ITVSLPDREGRLDILKVHAR  367 (638)
T ss_pred             EEECCCCHHHHHHHHHHHHh
Confidence            56688999999998887654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.87  E-value=6.4e-09  Score=108.78  Aligned_cols=141  Identities=17%  Similarity=0.255  Sum_probs=83.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeecccee--ecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALV--LADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~Galv--lAd~gi~~IDEidk~  445 (621)
                      -++|.||||||||.+++++++.+.-..+....+   +..+|-....++.     ..-++....  .....|+||||||.+
T Consensus       150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~-----~F~~A~~~a~~~~aPcVLFIDEIDA~  224 (413)
T PLN00020        150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQ-----RYREAADIIKKKGKMSCLFINDLDAG  224 (413)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHH-----HHHHHHHHhhccCCCeEEEEehhhhc
Confidence            689999999999999999999965543321110   0111111100000     001111111  112479999999985


Q ss_pred             Chhh---------h---hhhHhhhcceE-EEEecCCe--EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        446 PDAD---------R---TAIHEVMEQQT-ISIAKAGI--MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       446 ~~~~---------~---~~L~eame~q~-isi~k~gi--~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      -..-         |   ..|+..|+.-+ +++  .|.  ...-..++.||||+|...             .|++||++  
T Consensus       225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpG  289 (413)
T PLN00020        225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSL--GGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDG  289 (413)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCccccc--cccccccccCCCceEEEeCCCcc-------------cCCHhHcCCC
Confidence            4321         1   23445554311 111  232  123356789999999873             69999999  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      |||-.+.   .|+.+....|.+.+++
T Consensus       290 RfDk~i~---lPd~e~R~eIL~~~~r  312 (413)
T PLN00020        290 RMEKFYW---APTREDRIGVVHGIFR  312 (413)
T ss_pred             CCCceeC---CCCHHHHHHHHHHHhc
Confidence            9997653   6899999988886653

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.2e-08  Score=116.33  Aligned_cols=184  Identities=14%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC-----CccccceEEEeecCcccce-eeeccceeec----CCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG-----SSGVGLTAAVMKDPITNEM-VLEGGALVLA----DQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~-----~s~~gLta~~~~~~~~g~~-~l~~GalvlA----d~gi~  437 (621)
                      ..|++||+|+|||.|++++|..+-.   ....-+.+     .|-..|.++     ..|.. .-++|.|.-|    .-+|+
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa-----PPGYVGyeeGG~LTEaVRr~PySVi  597 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA-----PPGYVGYEEGGQLTEAVRRKPYSVI  597 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC-----CCCCceeccccchhHhhhcCCCeEE
Confidence            8899999999999999999998542   11100000     000001111     01111 1134444433    24799


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC---------CCCcccc------cCC
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP---------KRSIEQN------IQL  502 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~---------~~~~~~~------~~L  502 (621)
                      ++|||+|+.+++.+.|+++|++|+++-++ |.+..+. ++.||+|+|-....-..         .....+.      --+
T Consensus       598 LlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F  675 (786)
T COG0542         598 LLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHF  675 (786)
T ss_pred             EechhhhcCHHHHHHHHHHhcCCeeecCC-CCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhC
Confidence            99999999999999999999999999874 4454443 37999999976321110         1111111      158


Q ss_pred             CHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy11213        503 PAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       503 ~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~  581 (621)
                      +|+++.|+|-+++ ....+.+.-.+|+...+.                  .+.+-+. -+.....+++++.++|.+...
T Consensus       676 ~PEFLNRid~II~-F~~L~~~~l~~Iv~~~L~------------------~l~~~L~-~~~i~l~~s~~a~~~l~~~gy  734 (786)
T COG0542         676 RPEFLNRIDEIIP-FNPLSKEVLERIVDLQLN------------------RLAKRLA-ERGITLELSDEAKDFLAEKGY  734 (786)
T ss_pred             CHHHHhhcccEEe-ccCCCHHHHHHHHHHHHH------------------HHHHHHH-hCCceEEECHHHHHHHHHhcc
Confidence            9999999996444 456667777777766543                  2333333 122277889999999887543

>PLN03025 replication factor C subunit; Provisional

Probab=98.86  E-value=1e-08  Score=108.26  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      .|+||+||||||||++++++++.+....+.    .....+.++..+...     -..+.-....+......|++|||+|.
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~----~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~  110 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLGPNYK----EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS  110 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhcccCc----cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence            389999999999999999999885221110    000011111100000     00000000001112346999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      |+...+++|+..||.-             +..+.++.++|...             .+.++|.||+  ..+-...++.++
T Consensus       111 lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~-------------~i~~~L~SRc--~~i~f~~l~~~~  162 (319)
T PLN03025        111 MTSGAQQALRRTMEIY-------------SNTTRFALACNTSS-------------KIIEPIQSRC--AIVRFSRLSDQE  162 (319)
T ss_pred             cCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc-------------ccchhHHHhh--hcccCCCCCHHH
Confidence            9999999999999841             22244666777542             4778999998  344555566555


Q ss_pred             HHHHHHHHH
Q psy11213        525 DLKLAQHIT  533 (621)
Q Consensus       525 d~~ia~~il  533 (621)
                      -....+.+.
T Consensus       163 l~~~L~~i~  171 (319)
T PLN03025        163 ILGRLMKVV  171 (319)
T ss_pred             HHHHHHHHH
Confidence            555555554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.86  E-value=2.6e-09  Score=97.53  Aligned_cols=124  Identities=22%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc---ccEEecCCCCccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR---RSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p---r~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      .+++++|+||+|||++++.+++.+.   ..++.........    ........+.  ...........+.++++|||++.
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~   95 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE----GLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS   95 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh----hhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence            4899999999999999999998863   1111111000000    0000000000  00111222334679999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      +.+.....+++.|++.....       ..+.++.+|+++|+...           ..+.+++.+|||..+.
T Consensus        96 ~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~  148 (151)
T cd00009          96 LSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIV  148 (151)
T ss_pred             hhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-----------CCcChhHHhhhccEee
Confidence            98888888888888754322       33567899999998731           3578899999975443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.85  E-value=1.5e-08  Score=122.68  Aligned_cols=75  Identities=9%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             CCeeEecCCCCCChhhh-----hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        434 QGICCIDEFDKLPDADR-----TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~-----~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      .+|++|||||.+...+.     ..|+..|+...-        ..-...+.||||+|...             .|++||++
T Consensus      1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~--------~~s~~~VIVIAATNRPD-------------~LDPALLR 1791 (2281)
T CHL00206       1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE--------RCSTRNILVIASTHIPQ-------------KVDPALIA 1791 (2281)
T ss_pred             CeEEEEEchhhcCCCccceehHHHHHHHhccccc--------cCCCCCEEEEEeCCCcc-------------cCCHhHcC
Confidence            58999999999876532     344444542100        01123478999999874             69999998


Q ss_pred             --cccEEEEecCCCChHHHHHHHH
Q psy11213        509 --RFDLLWLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       509 --RFDli~~~~d~~d~~~d~~ia~  530 (621)
                        |||-. +.++.|+....+++..
T Consensus      1792 PGRFDR~-I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206       1792 PNKLNTC-IKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred             CCCCCeE-EEeCCCCchhHHHHHH
Confidence              99944 4555566544444443

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.85  E-value=1.6e-08  Score=111.65  Aligned_cols=134  Identities=17%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec---------------CCCCccccceEEEeecCcc-cceeeecc-ceeecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT---------------GRGSSGVGLTAAVMKDPIT-NEMVLEGG-ALVLAD  433 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~---------------g~~~s~~gLta~~~~~~~~-g~~~l~~G-alvlAd  433 (621)
                      .+||+||||||||++|+.+++.+.......               |.......+.++..+.-.. .+..-... .-..++
T Consensus        38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~  117 (472)
T PRK14962         38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGK  117 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCC
Confidence            489999999999999999999864321100               0000000111110000000 00000000 012346


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++|||++.+..+.+++|+..||+.             +..+. |++|+||.              .+++++.|||. 
T Consensus       118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv~Ilattn~~--------------kl~~~L~SR~~-  169 (472)
T PRK14962        118 YKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVVFVLATTNLE--------------KVPPTIISRCQ-  169 (472)
T ss_pred             eEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEEEEEEeCChH--------------hhhHHHhcCcE-
Confidence            679999999999998999999999862             11233 45566654              47899999993 


Q ss_pred             EEEecCCCChHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il  533 (621)
                       .+....++.+.-..+++.+.
T Consensus       170 -vv~f~~l~~~el~~~L~~i~  189 (472)
T PRK14962        170 -VIEFRNISDELIIKRLQEVA  189 (472)
T ss_pred             -EEEECCccHHHHHHHHHHHH
Confidence             44445555555444444443

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.85  E-value=7.3e-09  Score=114.50  Aligned_cols=139  Identities=16%  Similarity=0.205  Sum_probs=81.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCccccee--ee---ccceeec---CCCeeEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMV--LE---GGALVLA---DQGICCIDE  441 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~--l~---~GalvlA---d~gi~~IDE  441 (621)
                      ++||+||||||||++++++++.+....+..... .....+.++.......|+..  +.   ..+.-.+   ...|+||||
T Consensus       218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE  297 (512)
T TIGR03689       218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE  297 (512)
T ss_pred             ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence            799999999999999999999876543321000 00000000000000011100  00   0011111   246999999


Q ss_pred             CCCCChh------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213        442 FDKLPDA------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-  508 (621)
Q Consensus       442 idk~~~~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-  508 (621)
                      +|.+...            ..+.|+..|+.         ...  ..+..||||+|...             .|+++|++ 
T Consensus       298 iD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d-------------~LDpALlRp  353 (512)
T TIGR03689       298 MDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNRED-------------MIDPAILRP  353 (512)
T ss_pred             hhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChh-------------hCCHhhcCc
Confidence            9986421            11345554542         111  13578999999874             59999998 


Q ss_pred             -cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 -RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 -RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                       |||.. +.++.|+.+...+|.++.+.
T Consensus       354 GRfD~~-I~~~~Pd~e~r~~Il~~~l~  379 (512)
T TIGR03689       354 GRLDVK-IRIERPDAEAAADIFSKYLT  379 (512)
T ss_pred             cccceE-EEeCCCCHHHHHHHHHHHhh
Confidence             99955 67789999999999987764

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.85  E-value=1.6e-08  Score=119.55  Aligned_cols=180  Identities=14%  Similarity=0.163  Sum_probs=106.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---EE-e-cCCCC---ccccceEEEeecCcccceee-eccc----eeecCCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---QY-T-TGRGS---SGVGLTAAVMKDPITNEMVL-EGGA----LVLADQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~-~-~g~~~---s~~gLta~~~~~~~~g~~~l-~~Ga----lvlAd~gi~  437 (621)
                      ++||+||||||||.+++++++.+.+.   .. . +....   +...|.++.     .|.... +.|.    +-....+|+
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~-----pgy~g~~~~g~l~~~v~~~p~~vL  674 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAP-----PGYVGYEEGGYLTEAVRRRPYSVI  674 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCC-----CcccccchhHHHHHHHHhCCCCeE
Confidence            69999999999999999999886321   11 1 00000   000111100     010000 1122    222245899


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC----CCCCCC--Ccc------cccCCCHh
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG----RYNPKR--SIE------QNIQLPAA  505 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g----~~~~~~--~~~------~~~~L~~a  505 (621)
                      +|||+++++++.++.|+.+|+++.++-. .|....+. ++.||+|+|....    +|....  ...      ..-.+.++
T Consensus       675 llDEieka~~~v~~~Ll~ile~g~l~d~-~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE  752 (857)
T PRK10865        675 LLDEVEKAHPDVFNILLQVLDDGRLTDG-QGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPE  752 (857)
T ss_pred             EEeehhhCCHHHHHHHHHHHhhCceecC-CceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHH
Confidence            9999999999999999999999988753 35444443 3779999997421    121110  001      12248899


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVK  578 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~  578 (621)
                      |++|+|-+++. .+++.+.-.+|+++.+...                 .++   ..+. ....+++++.++|.+
T Consensus       753 LlnRld~iivF-~PL~~edl~~Iv~~~L~~l-----------------~~r---l~~~gi~l~is~~al~~L~~  805 (857)
T PRK10865        753 FINRIDEVVVF-HPLGEQHIASIAQIQLQRL-----------------YKR---LEERGYEIHISDEALKLLSE  805 (857)
T ss_pred             HHHhCCeeEec-CCCCHHHHHHHHHHHHHHH-----------------HHH---HHhCCCcCcCCHHHHHHHHH
Confidence            99999965555 4566666667776665321                 111   1111 246788888888775

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.84  E-value=8.3e-09  Score=110.98  Aligned_cols=133  Identities=23%  Similarity=0.328  Sum_probs=79.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+...    ..++..... .  .+...+ ...+-.|   ..+|++|||+|.+..
T Consensus       158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~-g--~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~  229 (364)
T TIGR01242       158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYI-G--EGARLV-REIFELAKEKAPSIIFIDEIDAIAA  229 (364)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhh-h--HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhcc
Confidence            6999999999999999999998765543221    001110000 0  000000 0011111   347999999998732


Q ss_pred             -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                 ..+..+.+.+.+-      .|.  .-..++.||||+|...             .+++++++  |||- .
T Consensus       230 ~~~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~-~  287 (364)
T TIGR01242       230 KRTDSGTSGDREVQRTLMQLLAEL------DGF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDR-I  287 (364)
T ss_pred             ccccCCCCccHHHHHHHHHHHHHh------hCC--CCCCCEEEEEecCChh-------------hCChhhcCcccCce-E
Confidence                       2233444544321      110  1123578999999763             58899986  9995 4


Q ss_pred             EecCCCChHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il  533 (621)
                      +.++.|+.+...+|.+..+
T Consensus       288 i~v~~P~~~~r~~Il~~~~  306 (364)
T TIGR01242       288 IEVPLPDFEGRLEILKIHT  306 (364)
T ss_pred             EEeCCcCHHHHHHHHHHHH
Confidence            6778899988888876543

Many proteins may score above the trusted cutoff because an internal

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.84  E-value=1.3e-08  Score=117.40  Aligned_cols=124  Identities=24%  Similarity=0.324  Sum_probs=77.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecc--ce-eecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG--AL-VLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G--al-vlAd~gi~~IDEidk~~~  447 (621)
                      |++|+||||||||++++.+++...........  +..|+     .+  ..+. ++..  .+ ....+++++|||++.++.
T Consensus        54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna--~~~~i-----~d--ir~~-i~~a~~~l~~~~~~~IL~IDEIh~Ln~  123 (725)
T PRK13341         54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNA--VLAGV-----KD--LRAE-VDRAKERLERHGKRTILFIDEVHRFNK  123 (725)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcceeehh--hhhhh-----HH--HHHH-HHHHHHHhhhcCCceEEEEeChhhCCH
Confidence            99999999999999999999875432211110  00000     00  0000 0000  00 012357999999999999


Q ss_pred             hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ..+.+|+..||++.+               .+|+++  ||.             ..+.++++||+.  ++....++.+.-
T Consensus       124 ~qQdaLL~~lE~g~I---------------iLI~aTTenp~-------------~~l~~aL~SR~~--v~~l~pLs~edi  173 (725)
T PRK13341        124 AQQDALLPWVENGTI---------------TLIGATTENPY-------------FEVNKALVSRSR--LFRLKSLSDEDL  173 (725)
T ss_pred             HHHHHHHHHhcCceE---------------EEEEecCCChH-------------hhhhhHhhcccc--ceecCCCCHHHH
Confidence            999999999987654               344444  443             257899999984  344566666666


Q ss_pred             HHHHHHHHh
Q psy11213        526 LKLAQHITY  534 (621)
Q Consensus       526 ~~ia~~il~  534 (621)
                      ..++++++.
T Consensus       174 ~~IL~~~l~  182 (725)
T PRK13341        174 HQLLKRALQ  182 (725)
T ss_pred             HHHHHHHHH
Confidence            666666553

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.84  E-value=7e-09  Score=120.15  Aligned_cols=177  Identities=15%  Similarity=0.169  Sum_probs=111.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeec----cceeecCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEG----GALVLADQG  435 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~----GalvlAd~g  435 (621)
                      .|+||+||||||||.+++.++...-.          .+|....    ..+.+..   ...|+|.-.-    ..+..+.++
T Consensus       208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~----~~llaG~---~~~Ge~e~rl~~l~~~l~~~~~~  280 (758)
T PRK11034        208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI----GSLLAGT---KYRGDFEKRFKALLKQLEQDTNS  280 (758)
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH----HHHhccc---chhhhHHHHHHHHHHHHHhcCCC
Confidence            39999999999999999999875311          1111100    0011100   0122222110    011123568


Q ss_pred             eeEecCCCCCC------h---hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        436 ICCIDEFDKLP------D---ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       436 i~~IDEidk~~------~---~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      |+||||++.+-      .   +..+.|..+++.+               +..+|||+|+.+        +..-+..+++|
T Consensus       281 ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------------~i~vIgATt~~E--------~~~~~~~D~AL  337 (758)
T PRK11034        281 ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVIGSTTYQE--------FSNIFEKDRAL  337 (758)
T ss_pred             EEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------------CeEEEecCChHH--------HHHHhhccHHH
Confidence            99999999762      1   1122344455433               356899999862        33335789999


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTEL  583 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~l  583 (621)
                      .+||+  .+.++.|+.++...|.+.+.......     ..-.++.+.++..+..+.++  .-.+++.|.+.+-+.-...
T Consensus       338 ~rRFq--~I~v~ePs~~~~~~IL~~~~~~ye~~-----h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~  409 (758)
T PRK11034        338 ARRFQ--KIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA  409 (758)
T ss_pred             HhhCc--EEEeCCCCHHHHHHHHHHHHHHhhhc-----cCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence            99996  46778999999999998775443221     23467888888888888876  5678899998887765433

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.83  E-value=7.2e-09  Score=102.31  Aligned_cols=132  Identities=23%  Similarity=0.265  Sum_probs=82.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcc--cceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPIT--NEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~--g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      |||++||||||||++++++|..+.-..+....    ..|.+..+-|...  .+..-.+.   .+-.+|+||||+|.+.-+
T Consensus       153 nVLFyGppGTGKTm~Akalane~kvp~l~vka----t~liGehVGdgar~Ihely~rA~---~~aPcivFiDE~DAiaLd  225 (368)
T COG1223         153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKA----TELIGEHVGDGARRIHELYERAR---KAAPCIVFIDELDAIALD  225 (368)
T ss_pred             eeEEECCCCccHHHHHHHHhcccCCceEEech----HHHHHHHhhhHHHHHHHHHHHHH---hcCCeEEEehhhhhhhhh
Confidence            99999999999999999999987655543211    1122211111100  00000111   123589999999986432


Q ss_pred             ------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        449 ------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       449 ------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                                  .-++|+.-|+         |+.  -+..+..|||+|...             -|++++.|||. --+-
T Consensus       226 RryQelRGDVsEiVNALLTelD---------gi~--eneGVvtIaaTN~p~-------------~LD~aiRsRFE-eEIE  280 (368)
T COG1223         226 RRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVTIAATNRPE-------------LLDPAIRSRFE-EEIE  280 (368)
T ss_pred             hhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEEEeecCChh-------------hcCHHHHhhhh-heee
Confidence                        3356776664         322  234456677777653             58999999995 5555


Q ss_pred             cCCCChHHHHHHHHHHHh
Q psy11213        517 QDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il~  534 (621)
                      .-.|+.++..+|.+..+.
T Consensus       281 F~LP~~eEr~~ile~y~k  298 (368)
T COG1223         281 FKLPNDEERLEILEYYAK  298 (368)
T ss_pred             eeCCChHHHHHHHHHHHH
Confidence            667888888888876654

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.82  E-value=1.9e-08  Score=103.29  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=128.8

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I  439 (621)
                      -+-++|+.|++||||-.++|+++..+||..     ..+...+..   ..|++..     .| -.=..|.+-+|+||.+++
T Consensus       226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~a-----pg-~~gk~GffE~AngGTVlL  299 (511)
T COG3283         226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHA-----PG-DEGKKGFFEQANGGTVLL  299 (511)
T ss_pred             cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCC-----CC-CCCccchhhhccCCeEEe
Confidence            466999999999999999999999988853     222222211   1122211     11 112468889999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      |||..|++.-|..|+..+.++++.-  -|.......++.||+|+--.-      ..+.+.-.+.+.|+-|....-+..++
T Consensus       300 DeIgEmSp~lQaKLLRFL~DGtFRR--VGee~Ev~vdVRVIcatq~nL------~~lv~~g~fReDLfyRLNVLtl~~Pp  371 (511)
T COG3283         300 DEIGEMSPRLQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQVNL------VELVQKGKFREDLFYRLNVLTLNLPP  371 (511)
T ss_pred             ehhhhcCHHHHHHHHHHhcCCceee--cCCcceEEEEEEEEecccccH------HHHHhcCchHHHHHHHhheeeecCCc
Confidence            9999999999999999999999865  577777788899999986430      01233335667777787533333221


Q ss_pred             CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213        520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR  599 (621)
Q Consensus       520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R  599 (621)
                      .                   ++...+..++..-++.++......-.|+++++...++.+|             .++-++|
T Consensus       372 L-------------------Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y-------------~WpGNVR  419 (511)
T COG3283         372 L-------------------RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY-------------AWPGNVR  419 (511)
T ss_pred             c-------------------ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc-------------CCCccHH
Confidence            1                   1111122223333344444433333899999998888765             5667899


Q ss_pred             HHHHHHHHH
Q psy11213        600 NLLAILRLS  608 (621)
Q Consensus       600 ~leslirla  608 (621)
                      ||.+.+--|
T Consensus       420 qL~N~iyRA  428 (511)
T COG3283         420 QLKNAIYRA  428 (511)
T ss_pred             HHHHHHHHH
Confidence            999887544

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.81  E-value=5.1e-08  Score=104.29  Aligned_cols=139  Identities=19%  Similarity=0.323  Sum_probs=90.9

Q ss_pred             CCCeeEecCCCCCC------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc
Q psy11213        433 DQGICCIDEFDKLP------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI  500 (621)
Q Consensus       433 d~gi~~IDEidk~~------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~  500 (621)
                      +.||+|||||||+.            +.+|..|+..||.-++++ |.|..-+-+  ..+||     .|.|+..++    .
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~--ILFI~-----~GAF~~~kp----~  316 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDH--ILFIA-----SGAFHVSKP----S  316 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCc--eeEEe-----cCCcCCCCh----h
Confidence            88999999999965            236889999999888876 333222211  23333     355554322    3


Q ss_pred             CCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Q psy11213        501 QLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVK  578 (621)
Q Consensus       501 ~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~  578 (621)
                      +|-|.|.-||- +.+..+..+.+.-..|...                 -....+++|.+.-+..  .-.++++|.+.|++
T Consensus       317 DlIPEl~GR~P-i~v~L~~L~~~dL~~ILte-----------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~  378 (443)
T PRK05201        317 DLIPELQGRFP-IRVELDALTEEDFVRILTE-----------------PKASLIKQYQALLATEGVTLEFTDDAIRRIAE  378 (443)
T ss_pred             hccHHHhCccc-eEEECCCCCHHHHHHHhcC-----------------ChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHH
Confidence            57899999996 5566677777665554421                 1245788888876655  56789999999998


Q ss_pred             HHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy11213        579 AYTELRKVARNSRDMSYTSARNLLAILRL  607 (621)
Q Consensus       579 ~y~~lR~~~~~~~~~~~~t~R~leslirl  607 (621)
                      ...++...      ...+..|.|.+++.=
T Consensus       379 ~A~~~N~~------~~~iGAR~LrtI~E~  401 (443)
T PRK05201        379 IAYQVNEK------TENIGARRLHTVMEK  401 (443)
T ss_pred             HHHHhccc------ccccchhhHHHHHHH
Confidence            76543221      122567887777653

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.79  E-value=7e-08  Score=96.78  Aligned_cols=163  Identities=14%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      +++|+|+||||||+|++++++.+..    ..|.+.....              ...      -...++++++|||++.++
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~--------------~~~------~~~~~~~~liiDdi~~l~  103 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL--------------LAF------DFDPEAELYAVDDVERLD  103 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH--------------HHH------hhcccCCEEEEeChhhcC
Confidence            8999999999999999999987421    1121111000              000      112346899999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCChHHH
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDND  525 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~~~d  525 (621)
                      ...+..|+.+|+.-.           -.....++.+++...          ....+.+.|.|||.- ..+....++.+.+
T Consensus       104 ~~~~~~L~~~~~~~~-----------~~~~~~vl~~~~~~~----------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~  162 (227)
T PRK08903        104 DAQQIALFNLFNRVR-----------AHGQGALLVAGPAAP----------LALPLREDLRTRLGWGLVYELKPLSDADK  162 (227)
T ss_pred             chHHHHHHHHHHHHH-----------HcCCcEEEEeCCCCH----------HhCCCCHHHHHHHhcCeEEEecCCCHHHH
Confidence            888888888886421           011233444544321          012366889999842 4555566666555


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy11213        526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL  605 (621)
Q Consensus       526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesli  605 (621)
                      ..++..+                            +++.+..+++++.++|.+.              ++-++|++..++
T Consensus       163 ~~~l~~~----------------------------~~~~~v~l~~~al~~L~~~--------------~~gn~~~l~~~l  200 (227)
T PRK08903        163 IAALKAA----------------------------AAERGLQLADEVPDYLLTH--------------FRRDMPSLMALL  200 (227)
T ss_pred             HHHHHHH----------------------------HHHcCCCCCHHHHHHHHHh--------------ccCCHHHHHHHH
Confidence            4444332                            2223577888888877752              223678888777


Q ss_pred             HHHHHHHHhcC
Q psy11213        606 RLSTALARLRL  616 (621)
Q Consensus       606 rla~A~Akl~l  616 (621)
                      +.-.+.|....
T Consensus       201 ~~l~~~~~~~~  211 (227)
T PRK08903        201 DALDRYSLEQK  211 (227)
T ss_pred             HHHHHHHHHhC
Confidence            77666665544

>KOG0736|consensus

Probab=98.79  E-value=2.1e-08  Score=111.63  Aligned_cols=136  Identities=24%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      ...|||+||||||||.+||++|....-..+ +=+|+.-    +|-....+++      +++. | -.|..+|+|+||+|.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~Fl-SVKGPELLNMYVGqSE~NVR~------VFer-A-R~A~PCVIFFDELDS  775 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLNFL-SVKGPELLNMYVGQSEENVRE------VFER-A-RSAAPCVIFFDELDS  775 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceeeEE-eecCHHHHHHHhcchHHHHHH------HHHH-h-hccCCeEEEeccccc
Confidence            357999999999999999999998654433 3333321    1111111111      1110 0 023468999999999


Q ss_pred             CChh-------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        445 LPDA-------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       445 ~~~~-------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      +.|.             +-+.|+.-|+         |....-...+.||||+|...             -|+++||+  |
T Consensus       776 lAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFViGATNRPD-------------LLDpALLRPGR  833 (953)
T KOG0736|consen  776 LAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVIGATNRPD-------------LLDPALLRPGR  833 (953)
T ss_pred             cCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEEecCCCcc-------------ccChhhcCCCc
Confidence            7654             2234554443         44443345689999999763             48999997  9


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      ||-.+.+-...+.+....+.+.+.+.
T Consensus       834 FDKLvyvG~~~d~esk~~vL~AlTrk  859 (953)
T KOG0736|consen  834 FDKLVYVGPNEDAESKLRVLEALTRK  859 (953)
T ss_pred             cceeEEecCCccHHHHHHHHHHHHHH
Confidence            99888888877888877888777543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.78  E-value=1.6e-08  Score=110.29  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~~  446 (621)
                      ++||+||||||||++++++++.+....+... ++   .+..     ...|+- ......+..|   ..+|+||||+|.+.
T Consensus       219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~-~s---eL~~-----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~  289 (438)
T PTZ00361        219 GVILYGPPGTGKTLLAKAVANETSATFLRVV-GS---ELIQ-----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIG  289 (438)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCCEEEEe-cc---hhhh-----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHh
Confidence            7999999999999999999998654432211 00   0111     001110 0000111112   24799999998753


Q ss_pred             hh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        447 DA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       447 ~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                      ..           .+..+.+.+.+-      .|..  -..++.||+|+|...             .|++++++  |||. 
T Consensus       290 ~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~-  347 (438)
T PTZ00361        290 TKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDR-  347 (438)
T ss_pred             ccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEE-
Confidence            21           233344444321      0111  123478999999763             58899985  9984 


Q ss_pred             EEecCCCChHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il  533 (621)
                      .+.++.|+.+....|.+..+
T Consensus       348 ~I~~~~Pd~~~R~~Il~~~~  367 (438)
T PTZ00361        348 KIEFPNPDEKTKRRIFEIHT  367 (438)
T ss_pred             EEEeCCCCHHHHHHHHHHHH
Confidence            56778999999988888654

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.78  E-value=3.1e-08  Score=116.04  Aligned_cols=144  Identities=18%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEe-c-CCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCC
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT-T-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFD  443 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEid  443 (621)
                      ...++|+-||+.+|||.++.++|+...+-+.- . ...+......|+.+.+ .+|...++.|+||-|  .|-.+++||++
T Consensus       887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELN  965 (4600)
T COG5271         887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELN  965 (4600)
T ss_pred             cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccc
Confidence            67899999999999999999999997665432 2 2222223334443333 378899999999988  56789999999


Q ss_pred             CCChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        444 KLPDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       444 k~~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      .++.++..+|...+++ +.+-|........-+..|.+.||.||.+|       +.+.-.|+.|+..|| |-....|.|
T Consensus       966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-------YgGRK~LSrAFRNRF-lE~hFddip 1035 (4600)
T COG5271         966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-------YGGRKGLSRAFRNRF-LEMHFDDIP 1035 (4600)
T ss_pred             cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-------ccchHHHHHHHHhhh-HhhhcccCc
Confidence            9999999999999975 66778777777777888999999999854       344457999999999 444444443

>KOG0730|consensus

Probab=98.77  E-value=9.3e-09  Score=113.20  Aligned_cols=131  Identities=23%  Similarity=0.295  Sum_probs=84.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeec---cceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG---GALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~---GalvlAd~gi~~IDEidk~~~  447 (621)
                      .|||+||||||||+++|++|+.+....... +++   .|....+-   .+|..+..   -|--.| ..|+|+||||.+..
T Consensus       470 GVLlyGPPGC~KT~lAkalAne~~~nFlsv-kgp---EL~sk~vG---eSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~  541 (693)
T KOG0730|consen  470 GVLLYGPPGCGKTLLAKALANEAGMNFLSV-KGP---ELFSKYVG---ESERAIREVFRKARQVA-PCIIFFDEIDALAG  541 (693)
T ss_pred             eEEEECCCCcchHHHHHHHhhhhcCCeeec-cCH---HHHHHhcC---chHHHHHHHHHHHhhcC-CeEEehhhHHhHhh
Confidence            699999999999999999999865443221 111   11110000   11111100   011122 38999999998533


Q ss_pred             -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                 ...+.|+.-|+.         +...  .++.||||+|...             .|++|||+  ||| -.
T Consensus       542 ~R~g~~~~v~~RVlsqLLtEmDG---------~e~~--k~V~ViAATNRpd-------------~ID~ALlRPGRlD-~i  596 (693)
T KOG0730|consen  542 SRGGSSSGVTDRVLSQLLTEMDG---------LEAL--KNVLVIAATNRPD-------------MIDPALLRPGRLD-RI  596 (693)
T ss_pred             ccCCCccchHHHHHHHHHHHccc---------cccc--CcEEEEeccCChh-------------hcCHHHcCCcccc-ee
Confidence                       234566666653         2211  3578999999873             69999999  999 55


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +.++.||.+...+|.+.-++
T Consensus       597 iyVplPD~~aR~~Ilk~~~k  616 (693)
T KOG0730|consen  597 IYVPLPDLEARLEILKQCAK  616 (693)
T ss_pred             EeecCccHHHHHHHHHHHHh
Confidence            66799999999988875543

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=98.76  E-value=1.7e-08  Score=111.25  Aligned_cols=157  Identities=17%  Similarity=0.235  Sum_probs=102.9

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCcc---ccceEEEeecCccccee-eeccceeecCCCeeEe
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSG---VGLTAAVMKDPITNEMV-LEGGALVLADQGICCI  439 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~---~gLta~~~~~~~~g~~~-l~~GalvlAd~gi~~I  439 (621)
                      -++++||.|.|||||-.|+|++.+.+...    ...++..+..   ..|++++- ...+|.+. --.|.+-+||+|.+|+
T Consensus       335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~-GafTga~~kG~~g~~~~A~gGtlFl  413 (606)
T COG3284         335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA-GAFTGARRKGYKGKLEQADGGTLFL  413 (606)
T ss_pred             cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCc-cccccchhccccccceecCCCccHH
Confidence            57899999999999999999999885421    1222222111   11222111 11122221 2357888999999999


Q ss_pred             cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      |||..|+-+.|+.|+.+++++.|.-  -|... .+.++.||+|++..-      ..+.++-.+.+.|+.|..-..+..+.
T Consensus       414 deIgd~p~~~Qs~LLrVl~e~~v~p--~g~~~-~~vdirvi~ath~dl------~~lv~~g~fredLyyrL~~~~i~lP~  484 (606)
T COG3284         414 DEIGDMPLALQSRLLRVLQEGVVTP--LGGTR-IKVDIRVIAATHRDL------AQLVEQGRFREDLYYRLNAFVITLPP  484 (606)
T ss_pred             HHhhhchHHHHHHHHHHHhhCceec--cCCcc-eeEEEEEEeccCcCH------HHHHHcCCchHHHHHHhcCeeeccCc
Confidence            9999999999999999999999874  24444 788899999998651      12444556788888887644444433


Q ss_pred             C-ChHHHHHHHHHHHh
Q psy11213        520 P-DRDNDLKLAQHITY  534 (621)
Q Consensus       520 ~-d~~~d~~ia~~il~  534 (621)
                      . +...+..+..+++.
T Consensus       485 lr~R~d~~~~l~~~~~  500 (606)
T COG3284         485 LRERSDRIPLLDRILK  500 (606)
T ss_pred             hhcccccHHHHHHHHH
Confidence            2 22333344444443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.7e-08  Score=110.28  Aligned_cols=126  Identities=25%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccc-----eee---cCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGA-----LVL---ADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Ga-----lvl---Ad~gi~~IDEi  442 (621)
                      .+||+||||||||.|+++++..+...++... +++   ++         +.|.-+...     +-.   ...+|+||||+
T Consensus       278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~-~~~---l~---------sk~vGesek~ir~~F~~A~~~~p~iiFiDEi  344 (494)
T COG0464         278 GVLLYGPPGTGKTLLAKAVALESRSRFISVK-GSE---LL---------SKWVGESEKNIRELFEKARKLAPSIIFIDEI  344 (494)
T ss_pred             eeEEECCCCCCHHHHHHHHHhhCCCeEEEee-CHH---Hh---------ccccchHHHHHHHHHHHHHcCCCcEEEEEch
Confidence            7999999999999999999997544443211 111   11         122211111     111   23689999999


Q ss_pred             CCCChh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        443 DKLPDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       443 dk~~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      |++.+.           ..+.++..|+...           -..++.||||+|...             .+++++++  |
T Consensus       345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN~p~-------------~ld~a~lR~gR  400 (494)
T COG0464         345 DSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATNRPD-------------DLDPALLRPGR  400 (494)
T ss_pred             hhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCCCcc-------------ccCHhhcccCc
Confidence            995432           3344555553211           012267999999884             68999999  9


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      || ..+.++.||.+...++.++.+.
T Consensus       401 fd-~~i~v~~pd~~~r~~i~~~~~~  424 (494)
T COG0464         401 FD-RLIYVPLPDLEERLEIFKIHLR  424 (494)
T ss_pred             cc-eEeecCCCCHHHHHHHHHHHhc
Confidence            99 6666789999999998887764

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.74  E-value=5.2e-08  Score=104.16  Aligned_cols=141  Identities=21%  Similarity=0.296  Sum_probs=92.5

Q ss_pred             cCCCeeEecCCCCCCh------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc
Q psy11213        432 ADQGICCIDEFDKLPD------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN  499 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~  499 (621)
                      +..||+|||||||+..            .+|..|+..||..++++ |.|...+-+  ..+||     .|.|...+    .
T Consensus       246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~--ILFI~-----~GAF~~~k----p  313 (441)
T TIGR00390       246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDH--ILFIA-----AGAFQLAK----P  313 (441)
T ss_pred             HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCc--eeEEe-----cCCcCCCC----h
Confidence            5789999999999653            26789999999888876 444322222  23333     34554322    2


Q ss_pred             cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHH
Q psy11213        500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIV  577 (621)
Q Consensus       500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~  577 (621)
                      .+|-|.|.-||- +.+..+..+.+.-..|...                 -....+++|.+.-+..  .-.++++|.+.|+
T Consensus       314 ~DlIPEl~GR~P-i~v~L~~L~~edL~rILte-----------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA  375 (441)
T TIGR00390       314 SDLIPELQGRFP-IRVELQALTTDDFERILTE-----------------PKNSLIKQYKALMKTEGVNIEFSDEAIKRIA  375 (441)
T ss_pred             hhccHHHhCccc-eEEECCCCCHHHHHHHhcC-----------------ChhHHHHHHHHHHhhcCcEEEEeHHHHHHHH
Confidence            357899999996 5666677777665554421                 1135788888877765  5677999999999


Q ss_pred             HHHHHHHHHhhcCCCCCccCHHHHHHHHHHH
Q psy11213        578 KAYTELRKVARNSRDMSYTSARNLLAILRLS  608 (621)
Q Consensus       578 ~~y~~lR~~~~~~~~~~~~t~R~leslirla  608 (621)
                      +...++...      ...+..|.|.+++.-.
T Consensus       376 ~~A~~~N~~------~~~iGAR~LrtilE~~  400 (441)
T TIGR00390       376 ELAYNVNEK------TENIGARRLHTVLERL  400 (441)
T ss_pred             HHHHHhccc------ccccchhhHHHHHHHH
Confidence            876554222      1225678887776543

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0733|consensus

Probab=98.73  E-value=1.6e-08  Score=109.98  Aligned_cols=144  Identities=19%  Similarity=0.216  Sum_probs=87.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      .|||-||||||||.||+++|..+.-..+......--.|..+....  .-.+..-++-   ..-.+|+||||||-+.+.-.
T Consensus       225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEk--kiRelF~~A~---~~aPcivFiDeIDAI~pkRe  299 (802)
T KOG0733|consen  225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEK--KIRELFDQAK---SNAPCIVFIDEIDAITPKRE  299 (802)
T ss_pred             ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHH--HHHHHHHHHh---ccCCeEEEeecccccccchh
Confidence            699999999999999999999976665542211100111111000  0000000111   11258999999999877533


Q ss_pred             hhhHhhhcceEEE-----EecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCCCChH
Q psy11213        451 TAIHEVMEQQTIS-----IAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDKPDRD  523 (621)
Q Consensus       451 ~~L~eame~q~is-----i~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~~d~~  523 (621)
                      . -.+-||++-+.     ...-+...+....+.||||+|...             .|.++|.+  ||| .-+....|++.
T Consensus       300 ~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFd-rEI~l~vP~e~  364 (802)
T KOG0733|consen  300 E-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFD-REICLGVPSET  364 (802)
T ss_pred             h-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-------------ccCHHHhcccccc-ceeeecCCchH
Confidence            2 23334433221     100111122346699999999763             48899986  999 77778899999


Q ss_pred             HHHHHHHHHHh
Q psy11213        524 NDLKLAQHITY  534 (621)
Q Consensus       524 ~d~~ia~~il~  534 (621)
                      ...+|.+.+..
T Consensus       365 aR~~IL~~~~~  375 (802)
T KOG0733|consen  365 AREEILRIICR  375 (802)
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.73  E-value=8.2e-08  Score=110.77  Aligned_cols=134  Identities=24%  Similarity=0.260  Sum_probs=74.8

Q ss_pred             cE-EEeCCCCcchhHHHHHHHhhccccEEe----cCCCCc----cccceEE-EeecCc--ccc---eeeeccce---eec
Q psy11213        371 NI-CLMGDPGVAKSQLLSYIERLARRSQYT----TGRGSS----GVGLTAA-VMKDPI--TNE---MVLEGGAL---VLA  432 (621)
Q Consensus       371 ~v-LL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~s----~~gLta~-~~~~~~--~g~---~~l~~Gal---vlA  432 (621)
                      |. ||+||||||||++++.+++.+......    +|.-.+    ..|...- ...+..  .|.   ..+..-..   ..+
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~g  118 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRG  118 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence            64 899999999999999999986542111    111000    0000000 001111  010   00000000   112


Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ...|++|||+++|+.+.+++|+..||+-             +..+. |++|+|+.              .|.++|+||+ 
T Consensus       119 k~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vrFILaTTe~~--------------kLl~TIlSRC-  170 (944)
T PRK14949        119 RFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVKFLLATTDPQ--------------KLPVTVLSRC-  170 (944)
T ss_pred             CcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeEEEEECCCch--------------hchHHHHHhh-
Confidence            4469999999999999999999999962             22333 34444443              4789999999 


Q ss_pred             EEEEecCCCChHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il  533 (621)
                      .+| -+...+.+.-...+++++
T Consensus       171 q~f-~fkpLs~eEI~~~L~~il  191 (944)
T PRK14949        171 LQF-NLKSLTQDEIGTQLNHIL  191 (944)
T ss_pred             eEE-eCCCCCHHHHHHHHHHHH
Confidence            343 344444444444445554

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.72  E-value=5e-08  Score=115.40  Aligned_cols=175  Identities=18%  Similarity=0.221  Sum_probs=105.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCcccceeeecc-c---eeec-CCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-A---LVLA-DQG  435 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-a---lvlA-d~g  435 (621)
                      |++|+||||||||++++.++..+...          ++....+.    +.+..   ...|+|.-.-- .   +..+ .+.
T Consensus       201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~----l~ag~---~~~g~~e~~lk~~~~~~~~~~~~~  273 (857)
T PRK10865        201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----LVAGA---KYRGEFEERLKGVLNDLAKQEGNV  273 (857)
T ss_pred             ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh----hhhcc---chhhhhHHHHHHHHHHHHHcCCCe
Confidence            99999999999999999999886432          11110000    11100   01232211000 0   0111 235


Q ss_pred             eeEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        436 ICCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       436 i~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      |+||||++.+...        ..+.|..+++.               ....+|||+|+.+        +..-++++++|.
T Consensus       274 ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~---------------g~l~~IgaTt~~e--------~r~~~~~d~al~  330 (857)
T PRK10865        274 ILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDE--------YRQYIEKDAALE  330 (857)
T ss_pred             EEEEecHHHhccCCCCccchhHHHHhcchhhc---------------CCCeEEEcCCCHH--------HHHHhhhcHHHH
Confidence            9999999987633        23344444433               2467899999873        333367899999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTE  582 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~  582 (621)
                      +||+.  +....|+.+....|.+.+......     ...-.++.+.+...+..+.++  ...+++.|.+.+-..-..
T Consensus       331 rRf~~--i~v~eP~~~~~~~iL~~l~~~~e~-----~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~  400 (857)
T PRK10865        331 RRFQK--VFVAEPSVEDTIAILRGLKERYEL-----HHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS  400 (857)
T ss_pred             hhCCE--EEeCCCCHHHHHHHHHHHhhhhcc-----CCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence            99974  446778888877777765432211     112346677777766666665  678899998877655433

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.71  E-value=5.5e-08  Score=111.80  Aligned_cols=131  Identities=25%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+.. +...  ...|..+...++    .+ ..+   ......|+||||+|.+..
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~----~f-~~a---~~~~P~IifIDEiD~l~~  258 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD----MF-EQA---KKAAPCIIFIDEIDAVGR  258 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHH----HH-HHH---HhcCCcEEEehhHhhhhh
Confidence            699999999999999999999876554331 1110  001111100000    00 000   001347999999998732


Q ss_pred             h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      .              ..+.++..|+.-           .-+.++.+|||+|+..             .|++++++  |||
T Consensus       259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd  314 (644)
T PRK10733        259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD  314 (644)
T ss_pred             ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence            1              123344444421           1145688999999874             58999996  999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHh
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~  534 (621)
                       ..+.++.|+.+...+|.+..+.
T Consensus       315 -r~i~v~~Pd~~~R~~Il~~~~~  336 (644)
T PRK10733        315 -RQVVVGLPDVRGREQILKVHMR  336 (644)
T ss_pred             -eEEEcCCCCHHHHHHHHHHHhh
Confidence             5666889999888888776553

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.70  E-value=4.1e-08  Score=114.96  Aligned_cols=130  Identities=23%  Similarity=0.303  Sum_probs=79.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee---ecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV---LADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv---lAd~gi~~IDEidk~~~  447 (621)
                      .+||+||||||||++++++|+.+....+... ++   .+....+ .  ..+..+. -.+.   .+..+|+||||+|.+.+
T Consensus       489 giLL~GppGtGKT~lakalA~e~~~~fi~v~-~~---~l~~~~v-G--ese~~i~-~~f~~A~~~~p~iifiDEid~l~~  560 (733)
T TIGR01243       489 GVLLFGPPGTGKTLLAKAVATESGANFIAVR-GP---EILSKWV-G--ESEKAIR-EIFRKARQAAPAIIFFDEIDAIAP  560 (733)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCCEEEEe-hH---HHhhccc-C--cHHHHHH-HHHHHHHhcCCEEEEEEChhhhhc
Confidence            6999999999999999999998654433211 00   0110000 0  0000000 0011   12358999999998643


Q ss_pred             h------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        448 A------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       448 ~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                      .            ..+.|+..|+.         ..  -+.++.||||+|...             .|++++++  |||. 
T Consensus       561 ~r~~~~~~~~~~~~~~~lL~~ldg---------~~--~~~~v~vI~aTn~~~-------------~ld~allRpgRfd~-  615 (733)
T TIGR01243       561 ARGARFDTSVTDRIVNQLLTEMDG---------IQ--ELSNVVVIAATNRPD-------------ILDPALLRPGRFDR-  615 (733)
T ss_pred             cCCCCCCccHHHHHHHHHHHHhhc---------cc--CCCCEEEEEeCCChh-------------hCCHhhcCCCccce-
Confidence            2            22345555542         11  134588999999873             58999996  9995 


Q ss_pred             EEecCCCChHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il  533 (621)
                      .+.++.|+.+...+|.+...
T Consensus       616 ~i~v~~Pd~~~R~~i~~~~~  635 (733)
T TIGR01243       616 LILVPPPDEEARKEIFKIHT  635 (733)
T ss_pred             EEEeCCcCHHHHHHHHHHHh
Confidence            46678999999988876443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0733|consensus

Probab=98.69  E-value=6.2e-08  Score=105.54  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=84.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      -.|||+||||||||.|||++|+.+.-. |.+=+|+.   |....+-+..  -.....++-+-   -.+|+|+||+|.+-+
T Consensus       546 sGvLL~GPPGCGKTLlAKAVANEag~N-FisVKGPE---LlNkYVGESErAVR~vFqRAR~s---aPCVIFFDEiDaL~p  618 (802)
T KOG0733|consen  546 SGVLLCGPPGCGKTLLAKAVANEAGAN-FISVKGPE---LLNKYVGESERAVRQVFQRARAS---APCVIFFDEIDALVP  618 (802)
T ss_pred             CceEEeCCCCccHHHHHHHHhhhccCc-eEeecCHH---HHHHHhhhHHHHHHHHHHHhhcC---CCeEEEecchhhcCc
Confidence            379999999999999999999985433 22223222   1110000000  00000111111   258999999998754


Q ss_pred             h-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        448 A-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       448 ~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                      .           ..+.|+.-|+.         ...  .-.+.||||+|...             -+++|+|+  ||| -.
T Consensus       619 ~R~~~~s~~s~RvvNqLLtElDG---------l~~--R~gV~viaATNRPD-------------iIDpAiLRPGRlD-k~  673 (802)
T KOG0733|consen  619 RRSDEGSSVSSRVVNQLLTELDG---------LEE--RRGVYVIAATNRPD-------------IIDPAILRPGRLD-KL  673 (802)
T ss_pred             ccCCCCchhHHHHHHHHHHHhcc---------ccc--ccceEEEeecCCCc-------------ccchhhcCCCccC-ce
Confidence            3           33556665642         111  11278999999763             48899997  999 56


Q ss_pred             EecCCCChHHHHHHHHHHHhh
Q psy11213        515 LIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~  535 (621)
                      +.++.|+.++...|.+.+.+.
T Consensus       674 LyV~lPn~~eR~~ILK~~tkn  694 (802)
T KOG0733|consen  674 LYVGLPNAEERVAILKTITKN  694 (802)
T ss_pred             eeecCCCHHHHHHHHHHHhcc
Confidence            667999999999999888764

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.68  E-value=1.5e-07  Score=94.07  Aligned_cols=167  Identities=16%  Similarity=0.230  Sum_probs=97.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      +++|+|+||||||++++++++.+..    .+|........          .... + +  ..  +...++++|||++.+.
T Consensus        40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~-~-~--~~--~~~~~lLvIDdi~~l~  103 (226)
T TIGR03420        40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ----------ADPE-V-L--EG--LEQADLVCLDDVEAIA  103 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH----------hHHH-H-H--hh--cccCCEEEEeChhhhc
Confidence            8999999999999999999987532    12221111000          0000 0 0  00  1234799999999998


Q ss_pred             hhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC-HhHhcccc-EEEEecCCCCh
Q psy11213        447 DAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP-AALLSRFD-LLWLIQDKPDR  522 (621)
Q Consensus       447 ~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~-~aLlsRFD-li~~~~d~~d~  522 (621)
                      ...  +..|..+++...            ..+..+|.|+|.....          ..+. +.|.+||. ...+....++.
T Consensus       104 ~~~~~~~~L~~~l~~~~------------~~~~~iIits~~~~~~----------~~~~~~~L~~r~~~~~~i~l~~l~~  161 (226)
T TIGR03420       104 GQPEWQEALFHLYNRVR------------EAGGRLLIAGRAAPAQ----------LPLRLPDLRTRLAWGLVFQLPPLSD  161 (226)
T ss_pred             CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChHH----------CCcccHHHHHHHhcCeeEecCCCCH
Confidence            754  777887765311            0112456666653211          1233 78899985 23444555555


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213        523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL  602 (621)
Q Consensus       523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le  602 (621)
                      +++..++++..                            .+....+++++.+.|...              ++-++|+|.
T Consensus       162 ~e~~~~l~~~~----------------------------~~~~~~~~~~~l~~L~~~--------------~~gn~r~L~  199 (226)
T TIGR03420       162 EEKIAALQSRA----------------------------ARRGLQLPDEVADYLLRH--------------GSRDMGSLM  199 (226)
T ss_pred             HHHHHHHHHHH----------------------------HHcCCCCCHHHHHHHHHh--------------ccCCHHHHH
Confidence            55554443321                            122466788888777752              123688888


Q ss_pred             HHHHHHHHHHHhcCC
Q psy11213        603 AILRLSTALARLRLC  617 (621)
Q Consensus       603 slirla~A~Akl~lr  617 (621)
                      .++.-+.+.|.-..+
T Consensus       200 ~~l~~~~~~~~~~~~  214 (226)
T TIGR03420       200 ALLDALDRASLAAKR  214 (226)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888888876655443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.65  E-value=5.6e-08  Score=114.91  Aligned_cols=178  Identities=17%  Similarity=0.182  Sum_probs=110.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeeccce----eecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL----VLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal----vlAd~gi  436 (621)
                      |++|+||||||||.+++.+|.....          .++....+    .+.+..   ...|+|.-.-..+    ....+.|
T Consensus       202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~----~l~ag~---~~~ge~e~rl~~i~~~~~~~~~~I  274 (821)
T CHL00095        202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG----LLLAGT---KYRGEFEERLKRIFDEIQENNNII  274 (821)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH----HHhccC---CCccHHHHHHHHHHHHHHhcCCeE
Confidence            8999999999999999999887532          12211110    011110   1123332110111    1123468


Q ss_pred             eEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        437 CCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       437 ~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      +||||++.+...        ..+.|..++..+               ...+|||+|+.+        +..-+...++|.+
T Consensus       275 LfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg---------------~l~~IgaTt~~e--------y~~~ie~D~aL~r  331 (821)
T CHL00095        275 LVIDEVHTLIGAGAAEGAIDAANILKPALARG---------------ELQCIGATTLDE--------YRKHIEKDPALER  331 (821)
T ss_pred             EEEecHHHHhcCCCCCCcccHHHHhHHHHhCC---------------CcEEEEeCCHHH--------HHHHHhcCHHHHh
Confidence            999999865421        233444444433               367789999863        3333567899999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      ||..  +..+.|+.++...|.+.+........     .-.++.+.+......+.++  .-.+++.|.+.|-+.....|-
T Consensus       332 Rf~~--I~v~ep~~~e~~aILr~l~~~~e~~~-----~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~  403 (821)
T CHL00095        332 RFQP--VYVGEPSVEETIEILFGLRSRYEKHH-----NLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRL  403 (821)
T ss_pred             cceE--EecCCCCHHHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHh
Confidence            9964  35566888888888887765432111     1127899999999999877  556899999988887665544

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.65  E-value=8.1e-07  Score=91.68  Aligned_cols=129  Identities=20%  Similarity=0.246  Sum_probs=88.6

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      .||+||||.+.++-+.-+.|+.|||+---              -.||.|+|....+-... ++..-..+|..||||. ||
T Consensus       292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGT-d~~sPhGIP~DlLDRl-lI  355 (450)
T COG1224         292 PGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGT-DIESPHGIPLDLLDRL-LI  355 (450)
T ss_pred             cceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeeccc-CCcCCCCCCHhhhhhe-eE
Confidence            48999999999999999999999997432              24667778642211111 1334457999999998 55


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL-CKGKNPTVPSSLTEHIVKAYTELRKVARNSRD  592 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~-ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~  592 (621)
                      .-..+                              ++.+++|.+|.- |+.....++++|.++|.+.             
T Consensus       356 I~t~p------------------------------y~~~EireIi~iRa~ee~i~l~~~Ale~L~~i-------------  392 (450)
T COG1224         356 ISTRP------------------------------YSREEIREIIRIRAKEEDIELSDDALEYLTDI-------------  392 (450)
T ss_pred             EecCC------------------------------CCHHHHHHHHHHhhhhhccccCHHHHHHHHhh-------------
Confidence            44433                              334445555432 3333788999999998864             


Q ss_pred             CCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        593 MSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       593 ~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ....|.|-...|+.-|.-.|+.+++..|+
T Consensus       393 g~etSLRYa~qLL~pa~iiA~~rg~~~V~  421 (450)
T COG1224         393 GEETSLRYAVQLLTPASIIAKRRGSKRVE  421 (450)
T ss_pred             chhhhHHHHHHhccHHHHHHHHhCCCeee
Confidence            12247888888888888889888887663

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.64  E-value=2.1e-07  Score=105.58  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCc--------ccc-ceEEEeecCcc--cc--e--eeec--cceeecCC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSS--------GVG-LTAAVMKDPIT--NE--M--VLEG--GALVLADQ  434 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s--------~~g-Lta~~~~~~~~--g~--~--~l~~--GalvlAd~  434 (621)
                      +||+|++|||||++++.+++.+.......+....        ..| .......+..+  |.  .  .++.  .....+..
T Consensus        41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~  120 (830)
T PRK07003         41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF  120 (830)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCc
Confidence            4899999999999999999986431110000000        000 00001111110  00  0  0110  00112345


Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      .|++|||+++|+....++|+..||+-             +..+.+|.++|...             .|+++|+|||  ..
T Consensus       121 KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------KIp~TIrSRC--q~  172 (830)
T PRK07003        121 KVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKFILATTDPQ-------------KIPVTVLSRC--LQ  172 (830)
T ss_pred             eEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEEEEEECChh-------------hccchhhhhe--EE
Confidence            79999999999999999999999972             22344444554331             5889999999  34


Q ss_pred             EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      +-+...+.++-....++++...         .-.++.+.|+.+...+.
T Consensus       173 f~Fk~Ls~eeIv~~L~~Il~~E---------gI~id~eAL~lIA~~A~  211 (830)
T PRK07003        173 FNLKQMPAGHIVSHLERILGEE---------RIAFEPQALRLLARAAQ  211 (830)
T ss_pred             EecCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence            4445555555555555554321         12456666766666654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.64  E-value=1.8e-07  Score=98.52  Aligned_cols=127  Identities=17%  Similarity=0.276  Sum_probs=77.4

Q ss_pred             cEEE-eCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Ch
Q psy11213        371 NICL-MGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PD  447 (621)
Q Consensus       371 ~vLL-~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~  447 (621)
                      |++| +|+||+|||++++++++.....++ ..... ....    ..++. -.++. .... ..++.++++|||++.+ ..
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~----~i~~~-l~~~~-~~~~-~~~~~~vliiDe~d~l~~~  115 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRID----FVRNR-LTRFA-STVS-LTGGGKVIIIDEFDRLGLA  115 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHH----HHHHH-HHHHH-Hhhc-ccCCCeEEEEECcccccCH
Confidence            5555 899999999999999987543221 11111 0000    00000 00010 0000 1245789999999999 66


Q ss_pred             hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHH
Q psy11213        448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK  527 (621)
Q Consensus       448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~  527 (621)
                      +.+..|...|+..             +..+.+|.++|...             .+.++|.|||.  .+..+.|+.+....
T Consensus       116 ~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~-------------~l~~~l~sR~~--~i~~~~p~~~~~~~  167 (316)
T PHA02544        116 DAQRHLRSFMEAY-------------SKNCSFIITANNKN-------------GIIEPLRSRCR--VIDFGVPTKEEQIE  167 (316)
T ss_pred             HHHHHHHHHHHhc-------------CCCceEEEEcCChh-------------hchHHHHhhce--EEEeCCCCHHHHHH
Confidence            6677787778752             34567888888652             58899999994  34556777766665


Q ss_pred             HHHHHH
Q psy11213        528 LAQHIT  533 (621)
Q Consensus       528 ia~~il  533 (621)
                      +++.++
T Consensus       168 il~~~~  173 (316)
T PHA02544        168 MMKQMI  173 (316)
T ss_pred             HHHHHH
Confidence            655443

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.63  E-value=2e-07  Score=93.60  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=105.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      .-.+.||+|||||..++.+++.+.+.+++-.-  ......+.            .+-.|+.  ..|..+|+||||+++.+
T Consensus        34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~------------ril~G~~--~~GaW~cfdefnrl~~~   99 (231)
T PF12774_consen   34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS------------RILKGLA--QSGAWLCFDEFNRLSEE   99 (231)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH------------HHHHHHH--HHT-EEEEETCCCSSHH
T ss_pred             CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH------------HHHHHHh--hcCchhhhhhhhhhhHH
Confidence            45689999999999999999999987765322  11110000            0011211  13667899999999988


Q ss_pred             hhhhhHh-------hhcc--eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213        449 DRTAIHE-------VMEQ--QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK  519 (621)
Q Consensus       449 ~~~~L~e-------ame~--q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~  519 (621)
                      ..+.+.+       ++..  ..+.+  .|....++..+.+..|+||.+         ....+||+.|..-|  .-+....
T Consensus       100 vLS~i~~~i~~i~~al~~~~~~~~~--~g~~i~l~~~~~iFiT~np~y---------~gr~~LP~nLk~lF--Rpvam~~  166 (231)
T PF12774_consen  100 VLSVISQQIQSIQDALRAKQKSFTL--EGQEIKLNPNCGIFITMNPGY---------AGRSELPENLKALF--RPVAMMV  166 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHCTSSEEEE--TTCEEE--TT-EEEEEE-B-C---------CCC--S-HHHCTTE--EEEE--S
T ss_pred             HHHHHHHHHHHHHHhhccccccccc--CCCEEEEccceeEEEeecccc---------CCcccCCHhHHHHh--heeEEeC
Confidence            8765543       4433  34444  688899999999999999973         33457999998888  4555555


Q ss_pred             CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213        520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR  599 (621)
Q Consensus       520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R  599 (621)
                      ||..   .|++-.+-.+                            .-.=+....+.+...|..+++.-.. ......+.|
T Consensus       167 PD~~---~I~ei~L~s~----------------------------GF~~a~~La~kl~~l~~l~~~~lS~-q~hydfgLR  214 (231)
T PF12774_consen  167 PDLS---LIAEILLLSQ----------------------------GFKDAKSLAKKLVSLFQLCKEQLSK-QDHYDFGLR  214 (231)
T ss_dssp             --HH---HHHHHHHHCC----------------------------CTSSHHHHHHHHHHHHHHHHHCS-S-STT---SHH
T ss_pred             CCHH---HHHHHHHHHc----------------------------CchhHHHHHHHHHHHHHHHHHhhcc-CccccccHH
Confidence            5533   2333333211                            1122345667778877666654322 234458899


Q ss_pred             HHHHHHHHHHHHHH
Q psy11213        600 NLLAILRLSTALAR  613 (621)
Q Consensus       600 ~leslirla~A~Ak  613 (621)
                      .+.+++++|...-|
T Consensus       215 alk~vl~~a~~~kr  228 (231)
T PF12774_consen  215 ALKSVLRMAGSLKR  228 (231)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999977644

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=1.5e-07  Score=105.73  Aligned_cols=150  Identities=18%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--cc--ce--eeecc--cee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TN--EM--VLEGG--ALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g--~~--~l~~G--alv  430 (621)
                      .+||+||||+|||++++.+|+.+....-.    +|.-.        +...+.   ..+..  .+  .+  .+...  .-.
T Consensus        39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi---EIDAAs~~~VddIReli~~~~y~P~  115 (702)
T PRK14960         39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI---EIDAASRTKVEDTRELLDNVPYAPT  115 (702)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE---EecccccCCHHHHHHHHHHHhhhhh
Confidence            56999999999999999999985421100    01000        000010   01110  01  00  00000  001


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .+...|++|||+++|+....++|+..||+-             +..+. |++|.++.              .++.+++||
T Consensus       116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~FILaTtd~~--------------kIp~TIlSR  168 (702)
T PRK14960        116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVKFLFATTDPQ--------------KLPITVISR  168 (702)
T ss_pred             cCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcEEEEEECChH--------------hhhHHHHHh
Confidence            123469999999999999999999999862             22233 44444443              478899999


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      +  ..+-+..++.+.-...+++++...         ...++.+.+..++..+
T Consensus       169 C--q~feFkpLs~eEI~k~L~~Il~kE---------gI~id~eAL~~IA~~S  209 (702)
T PRK14960        169 C--LQFTLRPLAVDEITKHLGAILEKE---------QIAADQDAIWQIAESA  209 (702)
T ss_pred             h--heeeccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence            9  344444555555555555554321         1235555555555544

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.62  E-value=4.7e-07  Score=97.38  Aligned_cols=151  Identities=17%  Similarity=0.181  Sum_probs=84.6

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccE-Ee---cCCCCc----cccceEEE-eecCcc--c-----ce--eeeccceeecC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQ-YT---TGRGSS----GVGLTAAV-MKDPIT--N-----EM--VLEGGALVLAD  433 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~-~~---~g~~~s----~~gLta~~-~~~~~~--g-----~~--~l~~GalvlAd  433 (621)
                      +||.||||+|||++++.+++.+.... +.   +|.-.+    ..|....+ ..++.+  +     +.  .+...+ ..++
T Consensus        41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p-~~~~  119 (363)
T PRK14961         41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP-SKSR  119 (363)
T ss_pred             EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc-ccCC
Confidence            69999999999999999998864211 00   010000    00000000 001100  0     00  000000 1234


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++|||+++|+....++|+..||+-             +..+. |++|.|+.              .+++++.||+  
T Consensus       120 ~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~fIl~t~~~~--------------~l~~tI~SRc--  170 (363)
T PRK14961        120 FKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIKFILATTDVE--------------KIPKTILSRC--  170 (363)
T ss_pred             ceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEcCChH--------------hhhHHHHhhc--
Confidence            569999999999999999999999862             22333 44443432              4889999999  


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ..+....++.++-...+.+++...         ...++.+.+..++..+
T Consensus       171 ~~~~~~~l~~~el~~~L~~~~~~~---------g~~i~~~al~~ia~~s  210 (363)
T PRK14961        171 LQFKLKIISEEKIFNFLKYILIKE---------SIDTDEYALKLIAYHA  210 (363)
T ss_pred             eEEeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence            555666677666666666655421         1235556665555544

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.62  E-value=1.9e-07  Score=103.78  Aligned_cols=135  Identities=20%  Similarity=0.218  Sum_probs=78.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCcccc-------ce----EE-EeecCc--ccce----ee---eccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVG-------LT----AA-VMKDPI--TNEM----VL---EGGA  428 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~g-------Lt----a~-~~~~~~--~g~~----~l---~~Ga  428 (621)
                      ++||.||||||||++++.+++.+....... +......|       +.    .- ...+..  +|.-    .+   +..+
T Consensus        45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P  124 (507)
T PRK06645         45 GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP  124 (507)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc
Confidence            799999999999999999999864321111 10000000       00    00 001110  1100    00   0011


Q ss_pred             eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                       ..++..|++|||++.++....++|+..||+.             +..+.+|.++|...             .+++++.|
T Consensus       125 -~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTte~~-------------kI~~tI~S  177 (507)
T PRK06645        125 -LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PPHIIFIFATTEVQ-------------KIPATIIS  177 (507)
T ss_pred             -ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeCChH-------------HhhHHHHh
Confidence             2346789999999999999999999999852             33444444444321             48899999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      |+  ..+-...++.++-....++++.
T Consensus       178 Rc--~~~ef~~ls~~el~~~L~~i~~  201 (507)
T PRK06645        178 RC--QRYDLRRLSFEEIFKLLEYITK  201 (507)
T ss_pred             cc--eEEEccCCCHHHHHHHHHHHHH
Confidence            99  3444555666655555555553

>PRK06620 hypothetical protein; Validated

Probab=98.61  E-value=9.9e-07  Score=87.71  Aligned_cols=155  Identities=15%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      .++|+||||+|||+|++++++... ..+.+....           .  . +        ......++||||++.......
T Consensus        46 ~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~~~~~-----------~--~-~--------~~~~~d~lliDdi~~~~~~~l  102 (214)
T PRK06620         46 TLLIKGPSSSGKTYLTKIWQNLSN-AYIIKDIFF-----------N--E-E--------ILEKYNAFIIEDIENWQEPAL  102 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHHhccC-CEEcchhhh-----------c--h-h--------HHhcCCEEEEeccccchHHHH
Confidence            699999999999999999887743 222221000           0  0 0        012346899999997643222


Q ss_pred             hhhHhh-hcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChHHHHHH
Q psy11213        451 TAIHEV-MEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRDNDLKL  528 (621)
Q Consensus       451 ~~L~ea-me~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~~d~~i  528 (621)
                      -.++.. +|.+.               ..++++..+..           .+.+ +.|.||+. ..++-...|+.+....+
T Consensus       103 f~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~  155 (214)
T PRK06620        103 LHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDELIKIL  155 (214)
T ss_pred             HHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHHHHHHH
Confidence            222222 24332               23444443331           1357 89999995 12444555555543333


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHH
Q psy11213        529 AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLS  608 (621)
Q Consensus       529 a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla  608 (621)
                      .+...                            +..+..+++++.++|++..              .-+.|.++.++...
T Consensus       156 l~k~~----------------------------~~~~l~l~~ev~~~L~~~~--------------~~d~r~l~~~l~~l  193 (214)
T PRK06620        156 IFKHF----------------------------SISSVTISRQIIDFLLVNL--------------PREYSKIIEILENI  193 (214)
T ss_pred             HHHHH----------------------------HHcCCCCCHHHHHHHHHHc--------------cCCHHHHHHHHHHH
Confidence            33221                            1124678999999888742              12578888777776


Q ss_pred             HHHHHhcCC
Q psy11213        609 TALARLRLC  617 (621)
Q Consensus       609 ~A~Akl~lr  617 (621)
                      .+.|....+
T Consensus       194 ~~~~~~~~~  202 (214)
T PRK06620        194 NYFALISKR  202 (214)
T ss_pred             HHHHHHcCC
Confidence            655555443

>KOG0652|consensus

Probab=98.60  E-value=3.8e-08  Score=97.13  Aligned_cols=130  Identities=24%  Similarity=0.327  Sum_probs=81.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecC---CCeeEecCCCCCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLAD---QGICCIDEFDKLP-  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd---~gi~~IDEidk~~-  446 (621)
                      .+|++||||||||.++|++|....... ..-.++.   |....+-   .|. .+.-.++.+|.   ..|+||||+|.+. 
T Consensus       207 GvLmYGPPGTGKTlmARAcAaqT~aTF-LKLAgPQ---LVQMfIG---dGA-kLVRDAFaLAKEkaP~IIFIDElDAIGt  278 (424)
T KOG0652|consen  207 GVLMYGPPGTGKTLMARACAAQTNATF-LKLAGPQ---LVQMFIG---DGA-KLVRDAFALAKEKAPTIIFIDELDAIGT  278 (424)
T ss_pred             ceEeeCCCCCcHHHHHHHHHHhccchH-HHhcchH---HHhhhhc---chH-HHHHHHHHHhhccCCeEEEEechhhhcc
Confidence            799999999999999999987632211 1000111   1100000   111 12222333442   4799999998753 


Q ss_pred             ----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        447 ----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       447 ----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                                .+.|..++|.+.|-      .|  .+-+.+.-||||+|...             -|.|+||+  |.| .-
T Consensus       279 KRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlRSGRLD-RK  336 (424)
T KOG0652|consen  279 KRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLRSGRLD-RK  336 (424)
T ss_pred             ccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhhccccc-cc
Confidence                      34567888988763      23  23467789999999873             37888886  787 55


Q ss_pred             EecCCCChHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~  530 (621)
                      +-++.|+++...+|.+
T Consensus       337 IEfP~Pne~aRarIlQ  352 (424)
T KOG0652|consen  337 IEFPHPNEEARARILQ  352 (424)
T ss_pred             ccCCCCChHHHHHHHH
Confidence            6677888887766654

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.59  E-value=2.2e-07  Score=93.80  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=22.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+++|+||||+|||+|++++++.+.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3899999999999999999887643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.58  E-value=2.1e-07  Score=110.45  Aligned_cols=182  Identities=18%  Similarity=0.207  Sum_probs=109.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe---cCCCC---ccccceEEEeecCcccceeee-cccee---ec-CCCeeEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT---TGRGS---SGVGLTAAVMKDPITNEMVLE-GGALV---LA-DQGICCI  439 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~---~g~~~---s~~gLta~~~~~~~~g~~~l~-~Galv---lA-d~gi~~I  439 (621)
                      |++|+||||+|||++++.++..+......   .+...   ....+.+...   ..|+|.-. ...+-   .. .+.|+||
T Consensus       196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~---~~g~~e~~l~~~l~~~~~~~~~~ILfI  272 (852)
T TIGR03346       196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK---YRGEFEERLKAVLNEVTKSEGQIILFI  272 (852)
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch---hhhhHHHHHHHHHHHHHhcCCCeEEEe
Confidence            89999999999999999998875432100   00000   0000111000   01222100 00010   11 2469999


Q ss_pred             cCCCCCCh--------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        440 DEFDKLPD--------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       440 DEidk~~~--------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ||++.+..        +..+.|..+++.               .+..+|||+|+.+        +...++++++|.+||.
T Consensus       273 DEih~l~~~g~~~~~~d~~~~Lk~~l~~---------------g~i~~IgaTt~~e--------~r~~~~~d~al~rRf~  329 (852)
T TIGR03346       273 DELHTLVGAGKAEGAMDAGNMLKPALAR---------------GELHCIGATTLDE--------YRKYIEKDAALERRFQ  329 (852)
T ss_pred             ccHHHhhcCCCCcchhHHHHHhchhhhc---------------CceEEEEeCcHHH--------HHHHhhcCHHHHhcCC
Confidence            99998753        122333333322               2467889998763        3333578999999997


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      .  +.+..|+.+.-..|.+.+......     ...-.++.+.+...+..+.++  .-.+++.|.+.|-+.-...|-
T Consensus       330 ~--i~v~~p~~~~~~~iL~~~~~~~e~-----~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~  398 (852)
T TIGR03346       330 P--VFVDEPTVEDTISILRGLKERYEV-----HHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM  398 (852)
T ss_pred             E--EEeCCCCHHHHHHHHHHHHHHhcc-----ccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence            4  456788888888877766443211     122347788899999888877  667999999988877654443

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0731|consensus

Probab=98.57  E-value=2.5e-07  Score=105.00  Aligned_cols=125  Identities=30%  Similarity=0.363  Sum_probs=81.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .+||+||||||||.|||++|..+.-.+++. |...  .-+|.-++.+++-           +..|   -..|+||||||.
T Consensus       346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l-----------f~~ar~~aP~iifideida  414 (774)
T KOG0731|consen  346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL-----------FPLARKNAPSIIFIDEIDA  414 (774)
T ss_pred             ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH-----------HHHhhccCCeEEEeccccc
Confidence            699999999999999999999987666542 2211  1111212222221           1111   147999999997


Q ss_pred             CChhh---------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213        445 LPDAD---------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-  508 (621)
Q Consensus       445 ~~~~~---------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-  508 (621)
                      ....-               .+.|+--|+         |-.++  ..+.++||+|...             -|++||++ 
T Consensus       415 ~~~~r~G~~~~~~~~e~e~tlnQll~emD---------gf~~~--~~vi~~a~tnr~d-------------~ld~allrp  470 (774)
T KOG0731|consen  415 VGRKRGGKGTGGGQDEREQTLNQLLVEMD---------GFETS--KGVIVLAATNRPD-------------ILDPALLRP  470 (774)
T ss_pred             ccccccccccCCCChHHHHHHHHHHHHhc---------CCcCC--CcEEEEeccCCcc-------------ccCHHhcCC
Confidence            54321               123333332         33332  4588999999874             48999997 


Q ss_pred             -cccEEEEecCCCChHHHHHHHHH
Q psy11213        509 -RFDLLWLIQDKPDRDNDLKLAQH  531 (621)
Q Consensus       509 -RFDli~~~~d~~d~~~d~~ia~~  531 (621)
                       ||| .-+..|.|+......|.+-
T Consensus       471 GRfd-r~i~i~~p~~~~r~~i~~~  493 (774)
T KOG0731|consen  471 GRFD-RQIQIDLPDVKGRASILKV  493 (774)
T ss_pred             Cccc-cceeccCCchhhhHHHHHH
Confidence             999 7777899999888877663

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.57  E-value=3.1e-07  Score=104.27  Aligned_cols=131  Identities=22%  Similarity=0.260  Sum_probs=75.7

Q ss_pred             c-EEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--cc--c-eeeeccce---
Q psy11213        371 N-ICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TN--E-MVLEGGAL---  429 (621)
Q Consensus       371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g--~-~~l~~Gal---  429 (621)
                      | +||.|+||+|||++++.+++.+......    +|.-.        +...+.   ..+..  .+  . ..+....-   
T Consensus        39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i---eidaas~~~VddiR~li~~~~~~p  115 (647)
T PRK07994         39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI---EIDAASRTKVEDTRELLDNVQYAP  115 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce---eecccccCCHHHHHHHHHHHHhhh
Confidence            5 5899999999999999999986542110    11000        000010   01111  01  0 00000000   


Q ss_pred             eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      ......|++|||+++|+....++|+..||+-             |..+ .|++|+++.              .|+++++|
T Consensus       116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v~FIL~Tt~~~--------------kLl~TI~S  168 (647)
T PRK07994        116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ--------------KLPVTILS  168 (647)
T ss_pred             hcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCeEEEEecCCcc--------------ccchHHHh
Confidence            1123459999999999999999999999972             2223 445555554              58999999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |+ ..|. +..++.++-....++++
T Consensus       169 RC-~~~~-f~~Ls~~ei~~~L~~il  191 (647)
T PRK07994        169 RC-LQFH-LKALDVEQIRQQLEHIL  191 (647)
T ss_pred             hh-eEee-CCCCCHHHHHHHHHHHH
Confidence            99 3444 45555555444555554

>KOG0727|consensus

Probab=98.55  E-value=3e-07  Score=90.54  Aligned_cols=126  Identities=27%  Similarity=0.346  Sum_probs=77.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccc------eeec---CCCeeEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGA------LVLA---DQGICCID  440 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Ga------lvlA---d~gi~~ID  440 (621)
                      .|||+||||||||+|++++|+....+... .|.  ..        ..    . .+-.|+      +-+|   ...|+|||
T Consensus       191 gvllygppg~gktml~kava~~t~a~firvvgs--ef--------vq----k-ylgegprmvrdvfrlakenapsiifid  255 (408)
T KOG0727|consen  191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS--EF--------VQ----K-YLGEGPRMVRDVFRLAKENAPSIIFID  255 (408)
T ss_pred             ceEEeCCCCCcHHHHHHHHhhccchheeeeccH--HH--------HH----H-HhccCcHHHHHHHHHHhccCCcEEEee
Confidence            69999999999999999999873322211 110  00        00    0 011111      1122   24799999


Q ss_pred             CCCCC-----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213        441 EFDKL-----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-  508 (621)
Q Consensus       441 Eidk~-----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-  508 (621)
                      |+|.+           ..+.|..|+|.+.|-      .|-..  .+.+-||.|+|...             .|.++||+ 
T Consensus       256 eidaiatkrfdaqtgadrevqril~ellnqm------dgfdq--~~nvkvimatnrad-------------tldpallrp  314 (408)
T KOG0727|consen  256 EIDAIATKRFDAQTGADREVQRILIELLNQM------DGFDQ--TTNVKVIMATNRAD-------------TLDPALLRP  314 (408)
T ss_pred             hhhhHhhhhccccccccHHHHHHHHHHHHhc------cCcCc--ccceEEEEecCccc-------------ccCHhhcCC
Confidence            99874           344567888887763      23222  34467999999863             58888886 


Q ss_pred             -cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 -RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 -RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                       |.| .-+-.+.||.-+.+-+-..+.
T Consensus       315 grld-rkiefplpdrrqkrlvf~tit  339 (408)
T KOG0727|consen  315 GRLD-RKIEFPLPDRRQKRLVFSTIT  339 (408)
T ss_pred             cccc-ccccCCCCchhhhhhhHHhhh
Confidence             777 445556777766665555443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.55  E-value=4.5e-07  Score=101.24  Aligned_cols=132  Identities=21%  Similarity=0.213  Sum_probs=72.5

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEe----cCC-----------CCccccceEEEeecCc-ccceeeec--cceeecC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYT----TGR-----------GSSGVGLTAAVMKDPI-TNEMVLEG--GALVLAD  433 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~-----------~~s~~gLta~~~~~~~-~g~~~l~~--GalvlAd  433 (621)
                      +||+||||||||++++.+++.+......    +|.           ...-..+.++....-. ..+. ++.  -.-..+.
T Consensus        41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l-~~~~~~~p~~~~  119 (509)
T PRK14958         41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTREL-LDNIPYAPTKGR  119 (509)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHH-HHHHhhccccCC
Confidence            6999999999999999999986432110    110           0000001111000000 0000 000  0001223


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++|||+++|+.+..++|+..||+-             |..+. |++|.+|.              .++++++||+ .
T Consensus       120 ~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~fIlattd~~--------------kl~~tI~SRc-~  171 (509)
T PRK14958        120 FKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKFILATTDHH--------------KLPVTVLSRC-L  171 (509)
T ss_pred             cEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEEEEEECChH--------------hchHHHHHHh-h
Confidence            469999999999999999999999962             33343 44444443              5788899999 3


Q ss_pred             EEEecCCCChHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il  533 (621)
                      .|- ....+.+.-....++++
T Consensus       172 ~~~-f~~l~~~~i~~~l~~il  191 (509)
T PRK14958        172 QFH-LAQLPPLQIAAHCQHLL  191 (509)
T ss_pred             hhh-cCCCCHHHHHHHHHHHH
Confidence            333 33344444334444444

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.55  E-value=3e-07  Score=102.83  Aligned_cols=131  Identities=21%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecC--ccc--c--eeeec--ccee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDP--ITN--E--MVLEG--GALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~--~~g--~--~~l~~--Galv  430 (621)
                      .+||+||||+|||++++.+++.+......    +|.-        .+...+..   .+.  ..|  +  -.++.  ..-.
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie---idaas~~gvd~ir~ii~~~~~~p~  116 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE---IDAASRTGVEETKEILDNIQYMPS  116 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE---eecccccCHHHHHHHHHHHHhhhh
Confidence            37899999999999999999875421100    0000        00001110   010  000  0  00000  0012


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .++..|++|||+++|+.+.+++|+..||+.             |..+ .|++|+++.              .++++++||
T Consensus       117 ~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~fIL~Ttd~~--------------kil~tI~SR  169 (546)
T PRK14957        117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKFILATTDYH--------------KIPVTILSR  169 (546)
T ss_pred             cCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceEEEEECChh--------------hhhhhHHHh
Confidence            335679999999999999999999999973             2223 345555543              577889999


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      +  ..+-+..++.+.-...+.+++
T Consensus       170 c--~~~~f~~Ls~~eI~~~L~~il  191 (546)
T PRK14957        170 C--IQLHLKHISQADIKDQLKIIL  191 (546)
T ss_pred             e--eeEEeCCCCHHHHHHHHHHHH
Confidence            9  344444555554444444444

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.54  E-value=1.7e-07  Score=105.04  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++|||+|+|+....++|+..||+-             +.++. |++|.|+.              .|+++++||+  
T Consensus       125 ~KViIIDEah~Ls~~AaNALLKTLEEP-------------P~~v~FILaTtep~--------------kLlpTIrSRC--  175 (700)
T PRK12323        125 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC--  175 (700)
T ss_pred             ceEEEEEChHhcCHHHHHHHHHhhccC-------------CCCceEEEEeCChH--------------hhhhHHHHHH--
Confidence            459999999999999999999999872             23334 44454444              5889999999  


Q ss_pred             EEEecCCCChHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il  533 (621)
                      ..+.+..++.+.-.+..++++
T Consensus       176 q~f~f~~ls~eei~~~L~~Il  196 (700)
T PRK12323        176 LQFNLKQMPPGHIVSHLDAIL  196 (700)
T ss_pred             HhcccCCCChHHHHHHHHHHH
Confidence            344444555554444444554

>KOG0740|consensus

Probab=98.54  E-value=2.4e-08  Score=106.86  Aligned_cols=144  Identities=22%  Similarity=0.301  Sum_probs=91.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      .+||.||||+|||+|++++|..+.-..|.    -|+..|+....-   .++..+. ..+-.|   .-+|+||||+|++..
T Consensus       188 glLLfGPpgtGKtmL~~aiAsE~~atff~----iSassLtsK~~G---e~eK~vr-alf~vAr~~qPsvifidEidslls  259 (428)
T KOG0740|consen  188 GLLLFGPPGTGKTMLAKAIATESGATFFN----ISASSLTSKYVG---ESEKLVR-ALFKVARSLQPSVIFIDEIDSLLS  259 (428)
T ss_pred             hhheecCCCCchHHHHHHHHhhhcceEee----ccHHHhhhhccC---hHHHHHH-HHHHHHHhcCCeEEEechhHHHHh
Confidence            68999999999999999999986444332    122223322111   1111000 011111   358999999998543


Q ss_pred             hhhhhhHhhhc--ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        448 ADRTAIHEVME--QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       448 ~~~~~L~eame--~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      +-....||.=.  .-+.-+...|....-+.|..|+||+|-.+             .+++++++|| .-++.+..||.+..
T Consensus       260 ~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~-------------e~Dea~~Rrf-~kr~yiplPd~etr  325 (428)
T KOG0740|consen  260 KRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW-------------ELDEAARRRF-VKRLYIPLPDYETR  325 (428)
T ss_pred             hcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch-------------HHHHHHHHHh-hceeeecCCCHHHH
Confidence            32222222110  00111223455555567899999999874             6899999999 68888999999999


Q ss_pred             HHHHHHHHhhh
Q psy11213        526 LKLAQHITYVH  536 (621)
Q Consensus       526 ~~ia~~il~~~  536 (621)
                      ..+..+++.-+
T Consensus       326 ~~~~~~ll~~~  336 (428)
T KOG0740|consen  326 SLLWKQLLKEQ  336 (428)
T ss_pred             HHHHHHHHHhC
Confidence            99999998754

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.53  E-value=3.7e-07  Score=100.76  Aligned_cols=130  Identities=23%  Similarity=0.271  Sum_probs=73.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE----EecCC--------CCccccceEEEeecCc--ccc--e--eeec-c-cee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGR--------GSSGVGLTAAVMKDPI--TNE--M--VLEG-G-ALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~--------~~s~~gLta~~~~~~~--~g~--~--~l~~-G-alv  430 (621)
                      ++||.||||+|||++++.+|+.+.-..    --+|.        ..+...+.   ..+..  .|.  .  .++. . .-+
T Consensus        37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~---eidaas~~~vddIR~Iie~~~~~P~  113 (491)
T PRK14964         37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI---EIDAASNTSVDDIKVILENSCYLPI  113 (491)
T ss_pred             eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE---EEecccCCCHHHHHHHHHHHHhccc
Confidence            699999999999999999998642110    00010        00000000   01110  110  0  0000 0 012


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .+...|++|||+++++.+..++|+..||+-             |..+ .|++|.++.              .++.++.||
T Consensus       114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v~fIlatte~~--------------Kl~~tI~SR  166 (491)
T PRK14964        114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHVKFILATTEVK--------------KIPVTIISR  166 (491)
T ss_pred             cCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChH--------------HHHHHHHHh
Confidence            346679999999999999999999999962             2223 344444433              488999999


Q ss_pred             ccEEEEecCCCChHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~i  532 (621)
                      +  ..+-...++.+.-.....++
T Consensus       167 c--~~~~f~~l~~~el~~~L~~i  187 (491)
T PRK14964        167 C--QRFDLQKIPTDKLVEHLVDI  187 (491)
T ss_pred             h--eeeecccccHHHHHHHHHHH
Confidence            9  33444444444444444443

>KOG0989|consensus

Probab=98.51  E-value=3.2e-07  Score=93.06  Aligned_cols=136  Identities=20%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc-cEEecCCC---Ccc-ccceEEEeecCcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR-SQYTTGRG---SSG-VGLTAAVMKDPIT  419 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr-~~~~~g~~---~s~-~gLta~~~~~~~~  419 (621)
                      ||+..|..+..++..+       +..|.|++||||||||..++++++.+.. ..+-+|.-   .|. -|..  +.+... 
T Consensus        40 gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Ki-  109 (346)
T KOG0989|consen   40 GQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKI-  109 (346)
T ss_pred             chHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhh-
Confidence            5655554444444432       2459999999999999999998877432 22222211   111 1111  111110 


Q ss_pred             ccee----eeccc--eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC
Q psy11213        420 NEMV----LEGGA--LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK  493 (621)
Q Consensus       420 g~~~----l~~Ga--lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~  493 (621)
                      ..|.    ...+.  -+...-.|++|||.|.|..+.+++|...||.-.           -..||.+|  ||...      
T Consensus       110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-----------~~trFiLI--cnyls------  170 (346)
T KOG0989|consen  110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-----------RTTRFILI--CNYLS------  170 (346)
T ss_pred             cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-----------cceEEEEE--cCChh------
Confidence            0000    00000  111122699999999999999999999999621           12234444  46552      


Q ss_pred             CCcccccCCCHhHhccccEEEEec
Q psy11213        494 RSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       494 ~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                             .|+.++.||+- -|...
T Consensus       171 -------rii~pi~SRC~-KfrFk  186 (346)
T KOG0989|consen  171 -------RIIRPLVSRCQ-KFRFK  186 (346)
T ss_pred             -------hCChHHHhhHH-HhcCC
Confidence                   69999999983 44443

>KOG0739|consensus

Probab=98.51  E-value=1.1e-07  Score=95.78  Aligned_cols=124  Identities=28%  Similarity=0.377  Sum_probs=74.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeee-----ccceeec---CCCeeEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLE-----GGALVLA---DQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~-----~GalvlA---d~gi~~IDE  441 (621)
                      -.|||+||||||||.|++++|..+....|...  +|.  |.         ..|.=+     ...+-+|   ...|+||||
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS--SSD--Lv---------SKWmGESEkLVknLFemARe~kPSIIFiDE  233 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVS--SSD--LV---------SKWMGESEKLVKNLFEMARENKPSIIFIDE  233 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEee--hHH--HH---------HHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence            37999999999999999999998763333211  111  21         122211     1122233   248999999


Q ss_pred             CCCCC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        442 FDKLP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       442 idk~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      ||.+-        +..|..--|.+-|    .  .|. -.-+..+.|++|+|..+             -|+.++.+||+ -
T Consensus       234 iDslcg~r~enEseasRRIKTEfLVQ----M--qGV-G~d~~gvLVLgATNiPw-------------~LDsAIRRRFe-k  292 (439)
T KOG0739|consen  234 IDSLCGSRSENESEASRRIKTEFLVQ----M--QGV-GNDNDGVLVLGATNIPW-------------VLDSAIRRRFE-K  292 (439)
T ss_pred             hhhhccCCCCCchHHHHHHHHHHHHh----h--hcc-ccCCCceEEEecCCCch-------------hHHHHHHHHhh-c
Confidence            99753        2222222222221    0  011 11234588999999885             68999999997 6


Q ss_pred             EEecCCCChHHHHH
Q psy11213        514 WLIQDKPDRDNDLK  527 (621)
Q Consensus       514 ~~~~d~~d~~~d~~  527 (621)
                      .+.++.|+......
T Consensus       293 RIYIPLPe~~AR~~  306 (439)
T KOG0739|consen  293 RIYIPLPEAHARAR  306 (439)
T ss_pred             ceeccCCcHHHhhh
Confidence            66667776654443

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.50  E-value=3.4e-07  Score=102.61  Aligned_cols=130  Identities=16%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCCCc--------cccceEEEeecCcc----c---cee--eeccce
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGSS--------GVGLTAAVMKDPIT----N---EMV--LEGGAL  429 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~s--------~~gLta~~~~~~~~----g---~~~--l~~Gal  429 (621)
                      .+|+.||||+|||++|+.+|+.+.....    .+|.-.+        ...+.   ..+..+    +   +..  ....+ 
T Consensus        40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii---eIdaas~igVd~IReIi~~~~~~P-  115 (605)
T PRK05896         40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV---ELDAASNNGVDEIRNIIDNINYLP-  115 (605)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE---EeccccccCHHHHHHHHHHHHhch-
Confidence            4899999999999999999998532111    1111000        00000   001100    0   000  00011 


Q ss_pred             eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      ..++.+|++|||++.|+.+.+++|+..||+-             |..+. |++|.++.              .|+++++|
T Consensus       116 ~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~tvfIL~Tt~~~--------------KLl~TI~S  168 (605)
T PRK05896        116 TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKHVVFIFATTEFQ--------------KIPLTIIS  168 (605)
T ss_pred             hhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CCcEEEEEECCChH--------------hhhHHHHh
Confidence            2346789999999999999999999999962             22233 44454443              58899999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |+.  .+-...++.+.-......++
T Consensus       169 Rcq--~ieF~~Ls~~eL~~~L~~il  191 (605)
T PRK05896        169 RCQ--RYNFKKLNNSELQELLKSIA  191 (605)
T ss_pred             hhh--hcccCCCCHHHHHHHHHHHH
Confidence            993  44445555555444444444

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.49  E-value=1.4e-06  Score=92.41  Aligned_cols=92  Identities=21%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec-CCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA-NPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~-Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ++.++++|||++.+.++.+..|+..|++..             ..+.+|.++ |+.              .+.++|.+|+
T Consensus       124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~--------------~~~~~L~sr~  176 (337)
T PRK12402        124 ADYKTILLDNAEALREDAQQALRRIMEQYS-------------RTCRFIIATRQPS--------------KLIPPIRSRC  176 (337)
T ss_pred             CCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------------CCCeEEEEeCChh--------------hCchhhcCCc
Confidence            456899999999999988999999988531             123344444 443              3567899998


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                        ..+....++.++-..+.+.+....         ...++.+.+..++.++
T Consensus       177 --~~v~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~al~~l~~~~  216 (337)
T PRK12402        177 --LPLFFRAPTDDELVDVLESIAEAE---------GVDYDDDGLELIAYYA  216 (337)
T ss_pred             --eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence              344455666655555555554321         1235666666666654

>KOG0742|consensus

Probab=98.49  E-value=3.9e-07  Score=95.20  Aligned_cols=135  Identities=23%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE--EecCCCCccccceEE-EeecCcccceeeeccceeecCCC-eeEecCCCC--
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ--YTTGRGSSGVGLTAA-VMKDPITNEMVLEGGALVLADQG-ICCIDEFDK--  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~--~~~g~~~s~~gLta~-~~~~~~~g~~~l~~GalvlAd~g-i~~IDEidk--  444 (621)
                      |||++||||||||+++|-++..+.-..  .|-|..   +.|-+- |..-..--.|..      .+.+| ++||||.|-  
T Consensus       386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV---APlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFL  456 (630)
T KOG0742|consen  386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV---APLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFL  456 (630)
T ss_pred             heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc---cccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHH
Confidence            999999999999999999998854322  121111   001100 000000011221      11223 679999975  


Q ss_pred             -------CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        445 -------LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       445 -------~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                             |+++.|++|...+=.       .|..   .-++.++-|+|..+             +|+.+.-|||| -++.+
T Consensus       457 ceRnktymSEaqRsaLNAlLfR-------TGdq---SrdivLvlAtNrpg-------------dlDsAV~DRid-e~veF  512 (630)
T KOG0742|consen  457 CERNKTYMSEAQRSALNALLFR-------TGDQ---SRDIVLVLATNRPG-------------DLDSAVNDRID-EVVEF  512 (630)
T ss_pred             HHhchhhhcHHHHHHHHHHHHH-------hccc---ccceEEEeccCCcc-------------chhHHHHhhhh-heeec
Confidence                   888888887766521       1111   11245556667653             68999999999 66777


Q ss_pred             CCCChHHHHHHHHHHHhhhcc
Q psy11213        518 DKPDRDNDLKLAQHITYVHKH  538 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~~~~~  538 (621)
                      +.|.+++..+|....++.+..
T Consensus       513 pLPGeEERfkll~lYlnkyi~  533 (630)
T KOG0742|consen  513 PLPGEEERFKLLNLYLNKYIL  533 (630)
T ss_pred             CCCChHHHHHHHHHHHHHHhc
Confidence            999999999999988876653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.49  E-value=1e-06  Score=99.92  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--ccc----eeeec--ccee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TNE----MVLEG--GALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g~----~~l~~--Galv  430 (621)
                      .+||+|+||+|||++++.+++.+......    +|.-.        ....+   ...+..  .|.    -.++.  -.-.
T Consensus        40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv---lEidaAs~~gVd~IRelle~a~~~P~  116 (709)
T PRK08691         40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL---LEIDAASNTGIDNIREVLENAQYAPT  116 (709)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce---EEEeccccCCHHHHHHHHHHHHhhhh
Confidence            47999999999999999999975321111    11000        00001   001110  110    00110  0002


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .+...|++|||+++|+....++|+..||+.             +..+.+|.++|-..             .++.+++||+
T Consensus       117 ~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~fILaTtd~~-------------kL~~TIrSRC  170 (709)
T PRK08691        117 AGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPH-------------KVPVTVLSRC  170 (709)
T ss_pred             hCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccchHHHHHH
Confidence            235579999999999999999999999862             23344444444331             5889999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                        ..+-+..++.++-.....+++...         ...++.+.++.++..+
T Consensus       171 --~~f~f~~Ls~eeI~~~L~~Il~kE---------gi~id~eAL~~Ia~~A  210 (709)
T PRK08691        171 --LQFVLRNMTAQQVADHLAHVLDSE---------KIAYEPPALQLLGRAA  210 (709)
T ss_pred             --hhhhcCCCCHHHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHh
Confidence              333334455555455555554321         1234555555555554

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2e-06  Score=97.55  Aligned_cols=187  Identities=18%  Similarity=0.206  Sum_probs=120.2

Q ss_pred             ecCCCCccccceEEEeecCccc------ceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC-----
Q psy11213        399 TTGRGSSGVGLTAAVMKDPITN------EMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA-----  467 (621)
Q Consensus       399 ~~g~~~s~~gLta~~~~~~~~g------~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~-----  467 (621)
                      ....+.....|.|++..++..|      .-.++||++..||||||+|||++.+....+..++.+|.++...+.-.     
T Consensus       185 v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~  264 (647)
T COG1067         185 VFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSS  264 (647)
T ss_pred             EecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCcccc
Confidence            3344455555999988887655      45689999999999999999999999999999999998765443211     


Q ss_pred             Ce---EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC-C-ChHHHHHHHHHHHhhhccCCCC
Q psy11213        468 GI---MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK-P-DRDNDLKLAQHITYVHKHSRQP  542 (621)
Q Consensus       468 gi---~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~-~-d~~~d~~ia~~il~~~~~~~~~  542 (621)
                      |.   .-..|+++.++++.|+..        +..-..+.+.++.=|+....+.+. | .++...++++++...       
T Consensus       265 ~~~v~~e~vP~d~klI~~Gn~~~--------l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~-------  329 (647)
T COG1067         265 GAPVRPESVPLDLKLILAGNRED--------LEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQE-------  329 (647)
T ss_pred             CcccCCCCcccceEEEeeCCHHH--------HHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHH-------
Confidence            11   224678899999999862        222223333333334332333332 2 223333333333221       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        543 PTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       543 ~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                                       .++. .-|.++..|.+.|...   .++.+ ...+...+.+|.+-.|+|.|--.|+++.++.++
T Consensus       330 -----------------v~~d~~ip~~~~~Av~~li~~---a~R~A-g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~  388 (647)
T COG1067         330 -----------------LARDGNIPHLDKDAVEELIRE---AARRA-GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLIT  388 (647)
T ss_pred             -----------------HHhcCCCCCCCHHHHHHHHHH---HHHhc-cccceeccCHHHHHHHHHHhhHHHhcCCcccCc
Confidence                             1222 2588888888777664   23332 223456688999999999999999999887764

>PRK06893 DNA replication initiation factor; Validated

Probab=98.47  E-value=1.1e-06  Score=88.42  Aligned_cols=145  Identities=16%  Similarity=0.182  Sum_probs=77.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      .++|+|+||||||+|++++++.+-    +..|.+......        .   ..+ .++    -..+..+++|||++.+.
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~---~~~-~~~----~~~~~dlLilDDi~~~~  104 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------F---SPA-VLE----NLEQQDLVCLDDLQAVI  104 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------h---hHH-HHh----hcccCCEEEEeChhhhc
Confidence            579999999999999999998742    223332110000        0   000 000    01235699999999875


Q ss_pred             h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChH
Q psy11213        447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRD  523 (621)
Q Consensus       447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~  523 (621)
                      .  ..+..|+..++...    ..       ....++.|+|-....|+         .+.+.|.||+- -..+-...|+.+
T Consensus       105 ~~~~~~~~l~~l~n~~~----~~-------~~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l~~pd~e  164 (229)
T PRK06893        105 GNEEWELAIFDLFNRIK----EQ-------GKTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQLNDLTDE  164 (229)
T ss_pred             CChHHHHHHHHHHHHHH----Hc-------CCcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeCCCCCHH
Confidence            3  33446666665321    00       11233444443211110         13378899873 013345666666


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213        524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA  579 (621)
Q Consensus       524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~  579 (621)
                      ...++.+...                            ...+..+++++.++|.+.
T Consensus       165 ~~~~iL~~~a----------------------------~~~~l~l~~~v~~~L~~~  192 (229)
T PRK06893        165 QKIIVLQRNA----------------------------YQRGIELSDEVANFLLKR  192 (229)
T ss_pred             HHHHHHHHHH----------------------------HHcCCCCCHHHHHHHHHh
Confidence            5555544332                            122467888888888764

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.46  E-value=1.3e-06  Score=91.91  Aligned_cols=130  Identities=16%  Similarity=0.164  Sum_probs=74.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      |++|+|+||+|||++++.+++.+....+.    .....+.++......     -.++ ....+...++..+++|||++.+
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~vviiDe~~~l  114 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERGIDVIRNKIKEF-ARTAPVGGAPFKIIFLDEADNL  114 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccchHHHHHHHHHH-HhcCCCCCCCceEEEEeCcccC
Confidence            79999999999999999998875321110    000001000000000     0000 0001111234579999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ..+.+..|+..|++.             +..+.+|.++|...             .+.+++.+|+.  ++....++.++-
T Consensus       115 ~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~~--~~~~~~l~~~ei  166 (319)
T PRK00440        115 TSDAQQALRRTMEMY-------------SQNTRFILSCNYSS-------------KIIDPIQSRCA--VFRFSPLKKEAV  166 (319)
T ss_pred             CHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc-------------ccchhHHHHhh--eeeeCCCCHHHH
Confidence            998889999988752             22345555666431             46788999983  345555555554


Q ss_pred             HHHHHHHH
Q psy11213        526 LKLAQHIT  533 (621)
Q Consensus       526 ~~ia~~il  533 (621)
                      ..+.++.+
T Consensus       167 ~~~l~~~~  174 (319)
T PRK00440        167 AERLRYIA  174 (319)
T ss_pred             HHHHHHHH
Confidence            44454444

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.46  E-value=1.4e-06  Score=97.05  Aligned_cols=73  Identities=27%  Similarity=0.337  Sum_probs=49.9

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      +...|++|||+++|+.+.+++|+..||+-             |..+. |++|.+|.              .|++++.||+
T Consensus       116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~FIL~ttd~~--------------kL~~tI~SRc  168 (535)
T PRK08451        116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKFILATTDPL--------------KLPATILSRT  168 (535)
T ss_pred             CCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEEEEEECChh--------------hCchHHHhhc
Confidence            45679999999999999999999999962             22333 44444442              5889999998


Q ss_pred             cEEEEecCCCChHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il  533 (621)
                        ..+-...++.+.-...+.+++
T Consensus       169 --~~~~F~~Ls~~ei~~~L~~Il  189 (535)
T PRK08451        169 --QHFRFKQIPQNSIISHLKTIL  189 (535)
T ss_pred             --eeEEcCCCCHHHHHHHHHHHH
Confidence              344445555544444444444

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.9e-07  Score=101.53  Aligned_cols=127  Identities=26%  Similarity=0.318  Sum_probs=84.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      .+||+||||||||.|+|+++..+.-..|. +|...  -.+|.-++.++|...     ++.  -.| .+|+||||+|....
T Consensus       185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~-----qAk--k~a-P~IIFIDEiDAvGr  256 (596)
T COG0465         185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE-----QAK--KNA-PCIIFIDEIDAVGR  256 (596)
T ss_pred             ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH-----Hhh--ccC-CCeEEEehhhhccc
Confidence            79999999999999999999998776654 23221  123444444444211     110  111 38999999998643


Q ss_pred             hh--------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        448 AD--------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       448 ~~--------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      .-              .+.|+--|+-         -.  -+....|+||+|...             -|++||++  |||
T Consensus       257 ~Rg~g~GggnderEQTLNQlLvEmDG---------F~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFD  312 (596)
T COG0465         257 QRGAGLGGGNDEREQTLNQLLVEMDG---------FG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFD  312 (596)
T ss_pred             ccCCCCCCCchHHHHHHHHHHhhhcc---------CC--CCCceEEEecCCCcc-------------cchHhhcCCCCcc
Confidence            22              2344444442         11  234578999999763             37899987  999


Q ss_pred             EEEEecCCCChHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~  530 (621)
                       .-++++.||-.-.++|.+
T Consensus       313 -RqI~V~~PDi~gRe~Ilk  330 (596)
T COG0465         313 -RQILVELPDIKGREQILK  330 (596)
T ss_pred             -eeeecCCcchhhHHHHHH
Confidence             788889999777777766

>PRK08727 hypothetical protein; Validated

Probab=98.44  E-value=1.4e-06  Score=87.77  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~  445 (621)
                      .++|+|++|||||.|+++++..+.+    ..|.+...     +         .+.+.   ..+ -..+-.+++|||++.+
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-----~---------~~~~~---~~~~~l~~~dlLiIDDi~~l  105 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-----A---------AGRLR---DALEALEGRSLVALDGLESI  105 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH-----h---------hhhHH---HHHHHHhcCCEEEEeCcccc
Confidence            5999999999999999998776432    22322100     0         00000   000 0113358999999988


Q ss_pred             C--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCCh
Q psy11213        446 P--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDR  522 (621)
Q Consensus       446 ~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~  522 (621)
                      .  +..+..++..++...            ..+..+|.|+|-....|         -.+.+.|.|||.- ..+..+.|+.
T Consensus       106 ~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l---------~~~~~dL~SRl~~~~~~~l~~~~~  164 (233)
T PRK08727        106 AGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGL---------ALVLPDLRSRLAQCIRIGLPVLDD  164 (233)
T ss_pred             cCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhh---------hhhhHHHHHHHhcCceEEecCCCH
Confidence            5  334556776665431            11235777777432222         2467899999732 3445566666


Q ss_pred             HHHHHHHHH
Q psy11213        523 DNDLKLAQH  531 (621)
Q Consensus       523 ~~d~~ia~~  531 (621)
                      +....+.++
T Consensus       165 e~~~~iL~~  173 (233)
T PRK08727        165 VARAAVLRE  173 (233)
T ss_pred             HHHHHHHHH
Confidence            655555554

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.43  E-value=5.1e-07  Score=98.60  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=72.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      +++|+|+||+|||.|++++++.+..      .+|.+...... .+..+. .+.....+.   ..  +.+..+++|||++.
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~~--~~~~dlLiiDDi~~  210 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFK---EK--YRSVDLLLIDDIQF  210 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHH---HH--HHhCCEEEEehhhh
Confidence            6899999999999999999886522      22322111000 000000 000000000   00  11346999999998


Q ss_pred             CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213        445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD  521 (621)
Q Consensus       445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d  521 (621)
                      +...  .+..++..++...   . .|        ..+|.|+|-..         .+--.+.+.|.|||.- ..+....|+
T Consensus       211 l~~~~~~~~~l~~~~n~~~---~-~~--------~~iiits~~~p---------~~l~~l~~~l~SRl~~g~~v~i~~pd  269 (405)
T TIGR00362       211 LAGKERTQEEFFHTFNALH---E-NG--------KQIVLTSDRPP---------KELPGLEERLRSRFEWGLVVDIEPPD  269 (405)
T ss_pred             hcCCHHHHHHHHHHHHHHH---H-CC--------CCEEEecCCCH---------HHHhhhhhhhhhhccCCeEEEeCCCC
Confidence            7543  3445555554210   0 01        22344444221         1111367889999963 456678888


Q ss_pred             hHHHHHHHHHHHh
Q psy11213        522 RDNDLKLAQHITY  534 (621)
Q Consensus       522 ~~~d~~ia~~il~  534 (621)
                      .+....|++....
T Consensus       270 ~~~r~~il~~~~~  282 (405)
T TIGR00362       270 LETRLAILQKKAE  282 (405)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777776543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.42  E-value=1.2e-06  Score=98.71  Aligned_cols=152  Identities=18%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecCc--ccc---eeee--cc-ce
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDPI--TNE---MVLE--GG-AL  429 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~~--~g~---~~l~--~G-al  429 (621)
                      .++||.||||+|||++++.+++.+......    +|.-        .+...+.   ..+..  .+.   ..+.  .+ .-
T Consensus        39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~---eId~a~~~~Id~iR~L~~~~~~~p  115 (624)
T PRK14959         39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV---EIDGASNRGIDDAKRLKEAIGYAP  115 (624)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE---EEecccccCHHHHHHHHHHHHhhh
Confidence            378899999999999999999986431100    0000        0000000   01110  000   0000  00 01


Q ss_pred             eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceE-EeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSI-LAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~v-iAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      ..+...|++|||+++|+.+.+++|+..||+-             +..+.+ ++|.++.              .+..+|+|
T Consensus       116 ~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~ifILaTt~~~--------------kll~TI~S  168 (624)
T PRK14959        116 MEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVTFVLATTEPH--------------KFPVTIVS  168 (624)
T ss_pred             hcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEEEEEecCChh--------------hhhHHHHh
Confidence            2234579999999999999999999999862             122334 4444443              47788999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      |+-  .+.+..++.++-....+.++...         ...++.+.+..++.++.
T Consensus       169 Rcq--~i~F~pLs~~eL~~~L~~il~~e---------gi~id~eal~lIA~~s~  211 (624)
T PRK14959        169 RCQ--HFTFTRLSEAGLEAHLTKVLGRE---------GVDYDPAAVRLIARRAA  211 (624)
T ss_pred             hhh--ccccCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence            993  33445555555444444443211         12356666666666553

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.41  E-value=3.1e-07  Score=107.61  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceee-eccceee---cCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVL-EGGALVL---ADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l-~~Galvl---Ad~gi~~IDEidk~~  446 (621)
                      ++||+||||||||+|++++++.+....+......    +..     ...|+..- ....+-.   ...+|+||||+|.+.
T Consensus       214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~----i~~-----~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~  284 (733)
T TIGR01243       214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPE----IMS-----KYYGESEERLREIFKEAEENAPSIIFIDEIDAIA  284 (733)
T ss_pred             eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHH----Hhc-----ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhc
Confidence            7999999999999999999998765443211100    000     00010000 0000001   124799999998864


Q ss_pred             hh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        447 DA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       447 ~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                      +.           .++.|+..|+.-.           -..++.||||+|+..             .|++++.+  |||. 
T Consensus       285 ~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~-  339 (733)
T TIGR01243       285 PKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR-  339 (733)
T ss_pred             ccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE-
Confidence            32           3456777775321           123468899999873             57888886  9985 


Q ss_pred             EEecCCCChHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~i  532 (621)
                      .+..+.|+.+...+|.+..
T Consensus       340 ~i~i~~P~~~~R~~Il~~~  358 (733)
T TIGR01243       340 EIVIRVPDKRARKEILKVH  358 (733)
T ss_pred             EEEeCCcCHHHHHHHHHHH
Confidence            4556888888888887743

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.41  E-value=1.6e-06  Score=98.38  Aligned_cols=90  Identities=19%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++|||+++|+....++|+..||+-             +..+ .|++|.+|.              .++.+++||+ +
T Consensus       125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P~~~~fIL~Ttd~~--------------kil~TIlSRc-~  176 (618)
T PRK14951        125 FKVFMIDEVHMLTNTAFNAMLKTLEEP-------------PEYLKFVLATTDPQ--------------KVPVTVLSRC-L  176 (618)
T ss_pred             ceEEEEEChhhCCHHHHHHHHHhcccC-------------CCCeEEEEEECCch--------------hhhHHHHHhc-e
Confidence            469999999999999999999999862             2233 345555554              4788899999 3


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      .|- +...+.++-....++++...         ...++.+.++.++..+
T Consensus       177 ~~~-f~~Ls~eei~~~L~~i~~~e---------gi~ie~~AL~~La~~s  215 (618)
T PRK14951        177 QFN-LRPMAPETVLEHLTQVLAAE---------NVPAEPQALRLLARAA  215 (618)
T ss_pred             eee-cCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence            444 44444444444444444311         1234555555555544

>KOG0743|consensus

Probab=98.41  E-value=7.2e-07  Score=95.12  Aligned_cols=138  Identities=20%  Similarity=0.230  Sum_probs=87.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh--h
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD--A  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~--~  448 (621)
                      .-||+||||||||+++-++|+.+.-.+|.-.         -+.+.+  +.+  +..=.+..+++.|++|.+||..-+  .
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLe---------Lt~v~~--n~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~  303 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLE---------LTEVKL--DSD--LRHLLLATPNKSILLIEDIDCSFDLRE  303 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEee---------eccccC--cHH--HHHHHHhCCCCcEEEEeeccccccccc
Confidence            3699999999999999999999988887622         212222  111  232233455789999999997522  1


Q ss_pred             hhhhhHhhhc--ceEEEEe-----cCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCC
Q psy11213        449 DRTAIHEVME--QQTISIA-----KAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDK  519 (621)
Q Consensus       449 ~~~~L~eame--~q~isi~-----k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~  519 (621)
                      .+..=.+..+  ...++.+     -+|....--..-.|+.|+|..+             .|+|||++  |.|+... .++
T Consensus       304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-------------kLDPALlRpGRmDmhI~-mgy  369 (457)
T KOG0743|consen  304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRMDMHIY-MGY  369 (457)
T ss_pred             ccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-------------hcCHhhcCCCcceeEEE-cCC
Confidence            1111001111  1223321     1344433322347788889875             69999999  9996554 588


Q ss_pred             CChHHHHHHHHHHHhh
Q psy11213        520 PDRDNDLKLAQHITYV  535 (621)
Q Consensus       520 ~d~~~d~~ia~~il~~  535 (621)
                      ...+.-+.+|...+..
T Consensus       370 Ctf~~fK~La~nYL~~  385 (457)
T KOG0743|consen  370 CTFEAFKTLASNYLGI  385 (457)
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            8889889999887753

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.40  E-value=2.8e-06  Score=96.19  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=75.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC----------CccccceEEEeecCcccce-----ee--ec-cceeec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG----------SSGVGLTAAVMKDPITNEM-----VL--EG-GALVLA  432 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~----------~s~~gLta~~~~~~~~g~~-----~l--~~-GalvlA  432 (621)
                      .+||+||||||||++++.+++.+....-..|..          .++...- -...++.++.-     .+  .. -+-..+
T Consensus        40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas~~~vd~ir~i~~~v~~~p~~~  118 (559)
T PRK05563         40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAASNNGVDEIRDIRDKVKYAPSEA  118 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeeccccCCHHHHHHHHHHHhhCcccC
Confidence            378899999999999999998853211100100          0000000 01111111000     00  00 001234


Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      +..|++|||+++|.....++|+..||+-             |.. +.|++|.+|.              .++++++||+.
T Consensus       119 ~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ifIlatt~~~--------------ki~~tI~SRc~  171 (559)
T PRK05563        119 KYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIFILATTEPH--------------KIPATILSRCQ  171 (559)
T ss_pred             CeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChh--------------hCcHHHHhHhe
Confidence            5679999999999999999999999863             223 3455555553              58899999993


Q ss_pred             EEEEecCCCChHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il  533 (621)
                       . +-...++...-....+.++
T Consensus       172 -~-~~f~~~~~~ei~~~L~~i~  191 (559)
T PRK05563        172 -R-FDFKRISVEDIVERLKYIL  191 (559)
T ss_pred             -E-EecCCCCHHHHHHHHHHHH
Confidence             3 3344555544444444443

>PRK04195 replication factor C large subunit; Provisional

Probab=98.39  E-value=2.4e-06  Score=95.35  Aligned_cols=147  Identities=20%  Similarity=0.248  Sum_probs=81.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh---
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD---  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~---  447 (621)
                      ++||+||||||||++++++++.+...+....  .+... +...... ..+. ......+.-....+++|||+|.+..   
T Consensus        41 ~lLL~GppG~GKTtla~ala~el~~~~ieln--asd~r-~~~~i~~-~i~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d  115 (482)
T PRK04195         41 ALLLYGPPGVGKTSLAHALANDYGWEVIELN--ASDQR-TADVIER-VAGE-AATSGSLFGARRKLILLDEVDGIHGNED  115 (482)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEEEc--ccccc-cHHHHHH-HHHH-hhccCcccCCCCeEEEEecCcccccccc
Confidence            8999999999999999999998754332211  11100 0000000 0000 0001111112467999999999876   


Q ss_pred             -hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH-hHhccccEEEEecCCCChHHH
Q psy11213        448 -ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA-ALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       448 -~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~-aLlsRFDli~~~~d~~d~~~d  525 (621)
                       ....+|+..|+.               .++.+|.++|...             .++. +|.+|+  ..+.+..++...-
T Consensus       116 ~~~~~aL~~~l~~---------------~~~~iIli~n~~~-------------~~~~k~Lrsr~--~~I~f~~~~~~~i  165 (482)
T PRK04195        116 RGGARAILELIKK---------------AKQPIILTANDPY-------------DPSLRELRNAC--LMIEFKRLSTRSI  165 (482)
T ss_pred             hhHHHHHHHHHHc---------------CCCCEEEeccCcc-------------ccchhhHhccc--eEEEecCCCHHHH
Confidence             345677777653               2345667777652             2444 788888  3445566666666


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ..+++.++...         ...++.+.+..++..+
T Consensus       166 ~~~L~~i~~~e---------gi~i~~eaL~~Ia~~s  192 (482)
T PRK04195        166 VPVLKRICRKE---------GIECDDEALKEIAERS  192 (482)
T ss_pred             HHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence            66666555321         1235555555555443

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=2.9e-06  Score=95.81  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             c-EEEeCCCCcchhHHHHHHHhhccccEE----ecCC-------CCccccceEEEeecCcc--cc--e-eeec---ccee
Q psy11213        371 N-ICLMGDPGVAKSQLLSYIERLARRSQY----TTGR-------GSSGVGLTAAVMKDPIT--NE--M-VLEG---GALV  430 (621)
Q Consensus       371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~-------~~s~~gLta~~~~~~~~--g~--~-~l~~---Galv  430 (621)
                      | +||+||+|||||++++.+++.+....-    -+|.       ..+..+-.--+..+..+  |-  . .+..   -.-.
T Consensus        36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~  115 (584)
T PRK14952         36 HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA  115 (584)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence            6 589999999999999999987542100    0010       00000000001111110  00  0 0000   0012


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .++..|++|||+++|+.+.+++|+..||+-             +.. +.|++|.++.              .|.++|.||
T Consensus       116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~~~~fIL~tte~~--------------kll~TI~SR  168 (584)
T PRK14952        116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PEHLIFIFATTEPE--------------KVLPTIRSR  168 (584)
T ss_pred             cCCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCChH--------------hhHHHHHHh
Confidence            356789999999999999999999999971             222 3455565553              588999999


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      + ..|- +...+.+.-.+...+++
T Consensus       169 c-~~~~-F~~l~~~~i~~~L~~i~  190 (584)
T PRK14952        169 T-HHYP-FRLLPPRTMRALIARIC  190 (584)
T ss_pred             c-eEEE-eeCCCHHHHHHHHHHHH
Confidence            8 3333 33444443333344443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.38  E-value=3.6e-07  Score=82.37  Aligned_cols=129  Identities=24%  Similarity=0.302  Sum_probs=69.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceE----EEeec--CcccceeeeccceeecCC---Ce
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTA----AVMKD--PITNEMVLEGGALVLADQ---GI  436 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta----~~~~~--~~~g~~~l~~GalvlAd~---gi  436 (621)
                      .+++|+||||||||++++.++..+...   + +.............    ....+  ...+....+ ..+..+..   ++
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v   81 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPDV   81 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCCE
Confidence            489999999999999999999987664   2 22222111100000    00000  001111111 22233333   99


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      ++|||++.+..............     ..............+|+|+|+.            ....+..+..|+|..+..
T Consensus        82 iiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~  144 (148)
T smart00382       82 LILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDE------------KDLGPALLRRRFDRRIVL  144 (148)
T ss_pred             EEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCC------------ccCchhhhhhccceEEEe
Confidence            99999999988766654433111     0000111224457899999961            123566666688755544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK09087 hypothetical protein; Validated

Probab=98.38  E-value=2.7e-06  Score=85.33  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      .++|+|++|+|||+|++++++.. ...|.+...     +         +.      ..+.....++++||+++.+.. .+
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~~-----~---------~~------~~~~~~~~~~l~iDDi~~~~~-~~  103 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPNE-----I---------GS------DAANAAAEGPVLIEDIDAGGF-DE  103 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhc-CCEEecHHH-----c---------ch------HHHHhhhcCeEEEECCCCCCC-CH
Confidence            49999999999999999988663 222322210     0         00      001111236899999998753 45


Q ss_pred             hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCChHHHHHHH
Q psy11213        451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDNDLKLA  529 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~~~d~~ia  529 (621)
                      ..|+..++.-            ......+|.|++.....|.         ...+.|.|||.- .++....|+.+...++.
T Consensus       104 ~~lf~l~n~~------------~~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL  162 (226)
T PRK09087        104 TGLFHLINSV------------RQAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEIGEPDDALLSQVI  162 (226)
T ss_pred             HHHHHHHHHH------------HhCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence            5566655421            1112345555543221111         235789999841 33334556655555555


Q ss_pred             HHH
Q psy11213        530 QHI  532 (621)
Q Consensus       530 ~~i  532 (621)
                      +..
T Consensus       163 ~~~  165 (226)
T PRK09087        163 FKL  165 (226)
T ss_pred             HHH
Confidence            443

>PHA01747 putative ATP-dependent protease

Probab=98.38  E-value=1.8e-06  Score=89.87  Aligned_cols=165  Identities=18%  Similarity=0.221  Sum_probs=105.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh-
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD-  447 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~-  447 (621)
                      +.|++=.||+|||||.+.+.+.+.+|.++  +|..+|-+.|.    .+..+|.    .|.+.+  .-++++||+..+.. 
T Consensus       190 NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~LF----yN~~t~~----~GLVg~--~D~VaFDEVa~i~f~  257 (425)
T PHA01747        190 PVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANLV----YDAKTNA----LGLVFL--SNGLIFDEIQTWKDS  257 (425)
T ss_pred             CeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHhe----EecCCCc----eeEEee--ccEEEEEccccccCC
Confidence            46999999999999999999999888877  55555555455    3444443    354443  35789999998662 


Q ss_pred             ---hhhhhhHhhhcceEEEEecCCeEE--ecCCcceEEeecCCCC---CCCCCCC---C-ccc--cc-CCCHhHhccccE
Q psy11213        448 ---ADRTAIHEVMEQQTISIAKAGIMT--RLNARVSILAAANPAY---GRYNPKR---S-IEQ--NI-QLPAALLSRFDL  512 (621)
Q Consensus       448 ---~~~~~L~eame~q~isi~k~gi~~--~l~ar~~viAa~Np~~---g~~~~~~---~-~~~--~~-~L~~aLlsRFDl  512 (621)
                         +....|...||++..+-.+.+...  +.++.++++-+.|+..   ++|....   . +.+  -+ .+.+||||||-+
T Consensus       258 ~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi  337 (425)
T PHA01747        258 NMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI  337 (425)
T ss_pred             CHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence               345667777999999986654444  7788899999888762   2232200   0 111  11 247899999952


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG  563 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~  563 (621)
                      +  -...|....|..+                .-..+....||.+|++.++
T Consensus       338 ~--g~~~pkIs~d~~~----------------sG~vL~~tilr~~i~~~q~  370 (425)
T PHA01747        338 I--IVNEKKITYDDII----------------SGRVLYPTILRGLISLVQS  370 (425)
T ss_pred             c--ccccCcCCHHHhc----------------ccceeHHHHHHHHHHHHHH
Confidence            2  2222221111111                2234667788888887764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.37  E-value=2.6e-06  Score=95.72  Aligned_cols=130  Identities=23%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecCc--ccc---e-eee-c-cceee
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDPI--TNE---M-VLE-G-GALVL  431 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~~--~g~---~-~l~-~-Galvl  431 (621)
                      +||.||||+|||++++.+++.+......    +|.-        .....+.   ..+..  .+.   . .++ . ..-..
T Consensus        41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~---ei~~~~~~~vd~ir~l~~~~~~~p~~  117 (527)
T PRK14969         41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI---EVDAASNTQVDAMRELLDNAQYAPTR  117 (527)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee---EeeccccCCHHHHHHHHHHHhhCccc
Confidence            5899999999999999999886321100    0110        0000000   00100  000   0 000 0 00012


Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      +...|++|||+++|+....++|+..||+-             |.. +.|++|.||.              .++.+++||+
T Consensus       118 ~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~fIL~t~d~~--------------kil~tI~SRc  170 (527)
T PRK14969        118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC  170 (527)
T ss_pred             CCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEEEEEEeCChh--------------hCchhHHHHH
Confidence            34579999999999999999999999872             222 3455565554              4677899999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il  533 (621)
                        ..+-+..++.+.-.....+++
T Consensus       171 --~~~~f~~l~~~~i~~~L~~il  191 (527)
T PRK14969        171 --LQFNLKQMPPPLIVSHLQHIL  191 (527)
T ss_pred             --HHHhcCCCCHHHHHHHHHHHH
Confidence              334444454444444444444

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.36  E-value=3e-06  Score=92.08  Aligned_cols=162  Identities=13%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCcc-ccce----EEEee--cCcccceeee------ccceee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSG-VGLT----AAVMK--DPITNEMVLE------GGALVL  431 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~-~gLt----a~~~~--~~~~g~~~l~------~Galvl  431 (621)
                      +++++|+||||||++++.+++.+..      .+|......+. ..+.    .....  .+..| +..+      ...+-.
T Consensus        57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~  135 (394)
T PRK00411         57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSG-LSFDELFDKIAEYLDE  135 (394)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHHHHHHHh
Confidence            8999999999999999999876532      22332221111 0000    00000  00000 0000      000000


Q ss_pred             c-CCCeeEecCCCCCC----hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        432 A-DQGICCIDEFDKLP----DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       432 A-d~gi~~IDEidk~~----~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      . ..-|++|||+|.+.    .+....|+.++++.            -..++++|+++|+..        +.+  .+.+.+
T Consensus       136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~------------~~~~v~vI~i~~~~~--------~~~--~l~~~~  193 (394)
T PRK00411        136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY------------PGARIGVIGISSDLT--------FLY--ILDPRV  193 (394)
T ss_pred             cCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc------------CCCeEEEEEEECCcc--------hhh--hcCHHH
Confidence            0 12479999999986    22333444444321            012578899999762        112  267788


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      .+||.-..+.....+.++-..+.++.+....       ....++.+.+....+.+.
T Consensus       194 ~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-------~~~~~~~~~l~~i~~~~~  242 (394)
T PRK00411        194 KSVFRPEEIYFPPYTADEIFDILKDRVEEGF-------YPGVVDDEVLDLIADLTA  242 (394)
T ss_pred             HhcCCcceeecCCCCHHHHHHHHHHHHHhhc-------ccCCCCHhHHHHHHHHHH
Confidence            8888655667777777777777665543210       112355555555555443

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.34  E-value=3.4e-06  Score=90.67  Aligned_cols=82  Identities=18%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEec-CCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRL-NARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l-~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      .|++|||+|.+.......|.+.+.-...        ..+ +.++.+|+++|...        ..+  .+.+.+.+||.-.
T Consensus       131 ~vlvIDE~d~L~~~~~~~L~~l~~~~~~--------~~~~~~~v~lI~i~n~~~--------~~~--~l~~~~~s~~~~~  192 (365)
T TIGR02928       131 LIIVLDEIDYLVGDDDDLLYQLSRARSN--------GDLDNAKVGVIGISNDLK--------FRE--NLDPRVKSSLCEE  192 (365)
T ss_pred             EEEEECchhhhccCCcHHHHhHhccccc--------cCCCCCeEEEEEEECCcc--------hHh--hcCHHHhccCCcc
Confidence            4899999999964333444443321000        011 24578888888652        111  4778889999655


Q ss_pred             EEecCCCChHHHHHHHHHHHh
Q psy11213        514 WLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~  534 (621)
                      .+...+++.++-..+.++.+.
T Consensus       193 ~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       193 EIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             eeeeCCCCHHHHHHHHHHHHH
Confidence            566777777777777776654

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.32  E-value=9.9e-07  Score=97.65  Aligned_cols=177  Identities=20%  Similarity=0.268  Sum_probs=94.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      +++|+|+||+|||+|++++++.+..      ..|.+...... .+..+. .+....++.   .  .+..-.+++|||++.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~--~~~~~dlLiiDDi~~  222 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNAL-RNNTMEEFK---E--KYRSVDVLLIDDIQF  222 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HcCcHHHHH---H--HHhcCCEEEEehhhh
Confidence            6999999999999999999987532      12322111000 000000 000000000   0  011345999999998


Q ss_pred             CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213        445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD  521 (621)
Q Consensus       445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d  521 (621)
                      +...  .+..++..++...    ..|       ...|+++.+|..          +--.+.+.|.|||.- ..+....|+
T Consensus       223 l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~----------~l~~l~~~l~SRl~~gl~v~i~~pd  281 (450)
T PRK00149        223 LAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPK----------ELPGLEERLRSRFEWGLTVDIEPPD  281 (450)
T ss_pred             hcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHH----------HHHHHHHHHHhHhcCCeeEEecCCC
Confidence            7543  3445555443211    001       123444433321          001267899999952 455567888


Q ss_pred             hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213        522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL  601 (621)
Q Consensus       522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l  601 (621)
                      .+....|++.....                            .+..+++++.++|++.+              .-++|.|
T Consensus       282 ~~~r~~il~~~~~~----------------------------~~~~l~~e~l~~ia~~~--------------~~~~R~l  319 (450)
T PRK00149        282 LETRIAILKKKAEE----------------------------EGIDLPDEVLEFIAKNI--------------TSNVREL  319 (450)
T ss_pred             HHHHHHHHHHHHHH----------------------------cCCCCCHHHHHHHHcCc--------------CCCHHHH
Confidence            88777777665431                            13456777777666531              1256666


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy11213        602 LAILRLSTALARLRLC  617 (621)
Q Consensus       602 eslirla~A~Akl~lr  617 (621)
                      ++++.-..+.|.+..+
T Consensus       320 ~~~l~~l~~~~~~~~~  335 (450)
T PRK00149        320 EGALNRLIAYASLTGK  335 (450)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            6666666666665543

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.31  E-value=4.5e-06  Score=93.14  Aligned_cols=136  Identities=14%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             cE-EEeCCCCcchhHHHHHHHhhcccc--E-EecCC-----------CCccccceEEEeecC-cccceeeeccc-eeecC
Q psy11213        371 NI-CLMGDPGVAKSQLLSYIERLARRS--Q-YTTGR-----------GSSGVGLTAAVMKDP-ITNEMVLEGGA-LVLAD  433 (621)
Q Consensus       371 ~v-LL~G~PGtGKS~ll~~ia~~~pr~--~-~~~g~-----------~~s~~gLta~~~~~~-~~g~~~l~~Ga-lvlAd  433 (621)
                      |. ||+||||||||++++++++.+...  . -.+|.           ...-..+.++....- .-.+..-.... -..++
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~  116 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG  116 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence            55 999999999999999999875320  0 01110           000000111100000 00000000010 12345


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      ..|++|||++.++....+.|+..||+.             +..+.+|.++|..             -.+.+++.||+.  
T Consensus       117 ~kVVIIDEad~ls~~a~naLLk~LEep-------------~~~t~~Il~t~~~-------------~kl~~~I~SRc~--  168 (504)
T PRK14963        117 RKVYILDEAHMMSKSAFNALLKTLEEP-------------PEHVIFILATTEP-------------EKMPPTILSRTQ--  168 (504)
T ss_pred             CeEEEEECccccCHHHHHHHHHHHHhC-------------CCCEEEEEEcCCh-------------hhCChHHhcceE--
Confidence            679999999999999999999999862             1223444444422             158899999993  


Q ss_pred             EEecCCCChHHHHHHHHHHHh
Q psy11213        514 WLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~  534 (621)
                      .+-...++.++-....++++.
T Consensus       169 ~~~f~~ls~~el~~~L~~i~~  189 (504)
T PRK14963        169 HFRFRRLTEEEIAGKLRRLLE  189 (504)
T ss_pred             EEEecCCCHHHHHHHHHHHHH
Confidence            444455666655555555543

>KOG0726|consensus

Probab=98.31  E-value=2.4e-07  Score=92.98  Aligned_cols=127  Identities=21%  Similarity=0.299  Sum_probs=77.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~~  446 (621)
                      .|+|+|+||||||.|++++|+.....+.         -.+++.......|+- .+.--.+-.|   ...|+||||||.+.
T Consensus       221 GVIlyG~PGTGKTLLAKAVANqTSATFl---------RvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG  291 (440)
T KOG0726|consen  221 GVILYGEPGTGKTLLAKAVANQTSATFL---------RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG  291 (440)
T ss_pred             eeEEeCCCCCchhHHHHHHhcccchhhh---------hhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc
Confidence            6999999999999999999987322110         011111111101100 0000000011   24799999999853


Q ss_pred             -----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        447 -----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       447 -----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                                 .+.|..++|.++|-      +|-..  ..++-||.|+|..+             .|+++|++  |.| .
T Consensus       292 tKRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie-------------~LDPaLiRPGrID-r  349 (440)
T KOG0726|consen  292 TKRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRID-R  349 (440)
T ss_pred             cccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEeccccc-------------ccCHhhcCCCccc-c
Confidence                       34567888988873      23222  34578999999985             58899986  887 5


Q ss_pred             EEecCCCChHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKL  528 (621)
Q Consensus       514 ~~~~d~~d~~~d~~i  528 (621)
                      -+.+..||+...++|
T Consensus       350 KIef~~pDe~TkkkI  364 (440)
T KOG0726|consen  350 KIEFPLPDEKTKKKI  364 (440)
T ss_pred             ccccCCCchhhhcee
Confidence            566677777665544

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=2.1e-06  Score=98.06  Aligned_cols=115  Identities=23%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEE------ecCCCCc----cccceEEE-eecCc--cc-----ceeeec-ccee
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQY------TTGRGSS----GVGLTAAV-MKDPI--TN-----EMVLEG-GALV  430 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~------~~g~~~s----~~gLta~~-~~~~~--~g-----~~~l~~-Galv  430 (621)
                      .++||+||||+|||++++.+++.+.....      .+|.-..    ..|....+ ..+..  .+     +..-.. ..-+
T Consensus        39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~  118 (620)
T PRK14948         39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV  118 (620)
T ss_pred             ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence            48999999999999999999998643211      1111000    00000000 01110  01     000000 0012


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .+...|++|||+++|+.+..++|+..||+-             +..+. |++|.||.              .+.++|.||
T Consensus       119 ~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~tvfIL~t~~~~--------------~llpTIrSR  171 (620)
T PRK14948        119 QARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPRVVFVLATTDPQ--------------RVLPTIISR  171 (620)
T ss_pred             cCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcCeEEEEEeCChh--------------hhhHHHHhh
Confidence            345679999999999999999999999952             22333 44454443              477899999


Q ss_pred             cc
Q psy11213        510 FD  511 (621)
Q Consensus       510 FD  511 (621)
                      +.
T Consensus       172 c~  173 (620)
T PRK14948        172 CQ  173 (620)
T ss_pred             ee
Confidence            93

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.30  E-value=3.8e-07  Score=84.22  Aligned_cols=114  Identities=18%  Similarity=0.323  Sum_probs=73.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      +.+|||.|+|||||+.+|++++....+..     ..     ...+.-....      ...+-.+.+|+++|+|++.++++
T Consensus        21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~-----~~-----~~~~~~~~~~------~~~l~~a~~gtL~l~~i~~L~~~   84 (138)
T PF14532_consen   21 SSPVLITGEPGTGKSLLARALHRYSGRAN-----GP-----FIVIDCASLP------AELLEQAKGGTLYLKNIDRLSPE   84 (138)
T ss_dssp             SS-EEEECCTTSSHHHHHHCCHHTTTTCC-----S------CCCCCHHCTC------HHHHHHCTTSEEEEECGCCS-HH
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHhhcCccC-----CC-----eEEechhhCc------HHHHHHcCCCEEEECChHHCCHH
Confidence            45999999999999999999999865421     00     0000000001      11222358999999999999999


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      .|..|.+++++..            +.++.+|+++...-.      ...+.-.+.+.|+.||+-..+.
T Consensus        85 ~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l~------~l~~~~~~~~~L~~~l~~~~i~  134 (138)
T PF14532_consen   85 AQRRLLDLLKRQE------------RSNVRLIASSSQDLE------ELVEEGRFSPDLYYRLSQLEIH  134 (138)
T ss_dssp             HHHHHHHHHHHCT------------TTTSEEEEEECC-CC------CHHHHSTHHHHHHHHCSTCEEE
T ss_pred             HHHHHHHHHHhcC------------CCCeEEEEEeCCCHH------HHhhccchhHHHHHHhCCCEEe
Confidence            9999999998621            345678888765411      2344456788899988755443

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.29  E-value=4e-06  Score=95.94  Aligned_cols=134  Identities=19%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-----cCCCCccccceEEEe-ecCcc--c-----ceeeeccce-eecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----TGRGSSGVGLTAAVM-KDPIT--N-----EMVLEGGAL-VLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~~~s~~gLta~~~-~~~~~--g-----~~~l~~Gal-vlAd~gi  436 (621)
                      .+||+||||+|||++|+.+|+.+......     ++.-.+-.|....+. .+..+  |     +..-....+ ..++..|
T Consensus        42 AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV  121 (725)
T PRK07133         42 AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI  121 (725)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEE
Confidence            36899999999999999999885432110     000000000000000 01100  0     000000001 1245679


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      ++|||++.|..+..++|+..||+-             |..+ .|++|.+|.              .|+++++||+  ..+
T Consensus       122 ~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILaTte~~--------------KLl~TI~SRc--q~i  172 (725)
T PRK07133        122 YIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILATTEVH--------------KIPLTILSRV--QRF  172 (725)
T ss_pred             EEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEEcCChh--------------hhhHHHHhhc--eeE
Confidence            999999999999999999999963             2233 345555553              5889999999  344


Q ss_pred             ecCCCChHHHHHHHHHHH
Q psy11213        516 IQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il  533 (621)
                      -...++.+.-...+..++
T Consensus       173 eF~~L~~eeI~~~L~~il  190 (725)
T PRK07133        173 NFRRISEDEIVSRLEFIL  190 (725)
T ss_pred             EccCCCHHHHHHHHHHHH
Confidence            455555555444444443

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.29  E-value=1.6e-06  Score=97.46  Aligned_cols=134  Identities=19%  Similarity=0.328  Sum_probs=73.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      .++|+|++|+|||.|++++++.+..      ..|.+...... .+..+. ++.....+.  .   ...+-.+++||||+.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al-~~~~~~~f~--~---~y~~~DLLlIDDIq~  388 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSI-RDGKGDSFR--R---RYREMDILLVDDIQF  388 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HhccHHHHH--H---HhhcCCEEEEehhcc
Confidence            4999999999999999999987532      23333211000 011000 000000000  0   012347899999998


Q ss_pred             CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213        445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD  521 (621)
Q Consensus       445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d  521 (621)
                      +..+.  +..|+..++...            ..+..||.|+|-...         +--.+.+.|.|||.- +.+-+..||
T Consensus       389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~---------eL~~l~~rL~SRf~~GLvv~I~~PD  447 (617)
T PRK14086        389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPK---------QLVTLEDRLRNRFEWGLITDVQPPE  447 (617)
T ss_pred             ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChH---------hhhhccHHHHhhhhcCceEEcCCCC
Confidence            75543  456666665421            112345556664321         112478899999952 334456777


Q ss_pred             hHHHHHHHHHH
Q psy11213        522 RDNDLKLAQHI  532 (621)
Q Consensus       522 ~~~d~~ia~~i  532 (621)
                      .+....|++..
T Consensus       448 ~EtR~aIL~kk  458 (617)
T PRK14086        448 LETRIAILRKK  458 (617)
T ss_pred             HHHHHHHHHHH
Confidence            77777666654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.29  E-value=3.1e-06  Score=93.08  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      +++|+|+||+|||+|++++++.+.    +..|.+....... +..+. .......+.    . ......+++|||++.+.
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l-~~~~~~~f~----~-~~~~~dvLiIDDiq~l~  215 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAI-RSGEMQRFR----Q-FYRNVDALFIEDIEVFS  215 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHH-hcchHHHHH----H-HcccCCEEEEcchhhhc
Confidence            799999999999999999998653    2233322110000 00000 000000000    0 01245799999999986


Q ss_pred             hh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChH
Q psy11213        447 DA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRD  523 (621)
Q Consensus       447 ~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~  523 (621)
                      ..  .+..++..++...-    .|        -.+|.|+|..         ..+-..+.+.|.|||. -+.+-...|+.+
T Consensus       216 ~k~~~qeelf~l~N~l~~----~~--------k~IIlts~~~---------p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e  274 (445)
T PRK12422        216 GKGATQEEFFHTFNSLHT----EG--------KLIVISSTCA---------PQDLKAMEERLISRFEWGIAIPLHPLTKE  274 (445)
T ss_pred             CChhhHHHHHHHHHHHHH----CC--------CcEEEecCCC---------HHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence            43  34555555432110    11        1344444432         1111247899999995 133444566666


Q ss_pred             HHHHHHHHH
Q psy11213        524 NDLKLAQHI  532 (621)
Q Consensus       524 ~d~~ia~~i  532 (621)
                      ....+.++.
T Consensus       275 ~r~~iL~~k  283 (445)
T PRK12422        275 GLRSFLERK  283 (445)
T ss_pred             HHHHHHHHH
Confidence            655555543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.29  E-value=2.6e-06  Score=91.18  Aligned_cols=133  Identities=15%  Similarity=0.179  Sum_probs=76.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCC--------CccccceEEEeecCc--cc-----ceeeeccce-e
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRG--------SSGVGLTAAVMKDPI--TN-----EMVLEGGAL-V  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~--------~s~~gLta~~~~~~~--~g-----~~~l~~Gal-v  430 (621)
                      .+||+||||+|||++++.+++.+.....    .+|.-        .+...+   ...++.  .+     +..-..... .
T Consensus        38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~  114 (355)
T TIGR02397        38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV---IEIDAASNNGVDDIREILDNVKYAPS  114 (355)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE---EEeeccccCCHHHHHHHHHHHhcCcc
Confidence            5799999999999999999988542210    01100        000001   001110  00     000000111 2


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .++..|++|||++.++....+.|+..||+.             +..+.+|.++|...             .+.+++.+|+
T Consensus       115 ~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~  168 (355)
T TIGR02397       115 SGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEPH-------------KIPATILSRC  168 (355)
T ss_pred             cCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccceeEEEEeCCHH-------------HHHHHHHhhe
Confidence            345679999999999998899999998752             33445555554321             4778999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHh
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      .  .+....++.++-..+..+++.
T Consensus       169 ~--~~~~~~~~~~~l~~~l~~~~~  190 (355)
T TIGR02397       169 Q--RFDFKRIPLEDIVERLKKILD  190 (355)
T ss_pred             e--EEEcCCCCHHHHHHHHHHHHH
Confidence            3  344456666665556655543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.29  E-value=2.2e-06  Score=98.11  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=65.9

Q ss_pred             eeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        436 ICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       436 i~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      |++|||||.+....+..|+..++--.          ...+++.|||.+|+..        +.+  .|.+.+.|||..-.+
T Consensus       872 IIILDEID~L~kK~QDVLYnLFR~~~----------~s~SKLiLIGISNdlD--------Lpe--rLdPRLRSRLg~eeI  931 (1164)
T PTZ00112        872 ILIIDEIDYLITKTQKVLFTLFDWPT----------KINSKLVLIAISNTMD--------LPE--RLIPRCRSRLAFGRL  931 (1164)
T ss_pred             EEEeehHhhhCccHHHHHHHHHHHhh----------ccCCeEEEEEecCchh--------cch--hhhhhhhhccccccc
Confidence            89999999998877788888876321          1245689999999762        111  356788899865446


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ..++.+.++...|+++.+...         ...++.+.+....+.+
T Consensus       932 vF~PYTaEQL~dILk~RAe~A---------~gVLdDdAIELIArkV  968 (1164)
T PTZ00112        932 VFSPYKGDEIEKIIKERLENC---------KEIIDHTAIQLCARKV  968 (1164)
T ss_pred             cCCCCCHHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHhh
Confidence            668888888888887765421         1245665555444443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.29  E-value=1.5e-06  Score=94.10  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=50.7

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      +...|++|||+|+|++...++|+..||+-.            +....|++|.||.              .+.++++||+ 
T Consensus       116 ~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~fIL~a~~~~--------------~llpTIrSRc-  168 (394)
T PRK07940        116 GRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTVWLLCAPSPE--------------DVLPTIRSRC-  168 (394)
T ss_pred             CCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCeEEEEECChH--------------HChHHHHhhC-
Confidence            345699999999999999999999998621            1225678888875              5899999999 


Q ss_pred             EEEEecCCCChHHHH
Q psy11213        512 LLWLIQDKPDRDNDL  526 (621)
Q Consensus       512 li~~~~d~~d~~~d~  526 (621)
                       ..+.+..|+.++-.
T Consensus       169 -~~i~f~~~~~~~i~  182 (394)
T PRK07940        169 -RHVALRTPSVEAVA  182 (394)
T ss_pred             -eEEECCCCCHHHHH
Confidence             45555666655543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.27  E-value=3.9e-06  Score=93.29  Aligned_cols=130  Identities=19%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccE----EecCCC--------CccccceEEEeecCc--ccc---eeeec--cc-eee
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRG--------SSGVGLTAAVMKDPI--TNE---MVLEG--GA-LVL  431 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~--------~s~~gLta~~~~~~~--~g~---~~l~~--Ga-lvl  431 (621)
                      +||+||||+|||++++.+++.+....    -.+|.-        .+...+.   ..+..  .|.   ..+..  .. -..
T Consensus        41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~---eidaas~~gvd~ir~I~~~~~~~P~~  117 (486)
T PRK14953         41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI---EIDAASNRGIDDIRALRDAVSYTPIK  117 (486)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE---EEeCccCCCHHHHHHHHHHHHhCccc
Confidence            57899999999999999999864210    001100        0000111   00110  000   00000  00 013


Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ++..|++|||+++|+.+..++|+..||+.             |.. +.|++|.|+.              .+++++.||+
T Consensus       118 ~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~Il~tt~~~--------------kl~~tI~SRc  170 (486)
T PRK14953        118 GKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIFILCTTEYD--------------KIPPTILSRC  170 (486)
T ss_pred             CCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCHH--------------HHHHHHHHhc
Confidence            45679999999999999999999999863             222 3455554443              4788999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il  533 (621)
                      -  .+....++.++-.....+++
T Consensus       171 ~--~i~f~~ls~~el~~~L~~i~  191 (486)
T PRK14953        171 Q--RFIFSKPTKEQIKEYLKRIC  191 (486)
T ss_pred             e--EEEcCCCCHHHHHHHHHHHH
Confidence            3  44445555555444444443

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.27  E-value=5.6e-06  Score=93.50  Aligned_cols=131  Identities=17%  Similarity=0.190  Sum_probs=73.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCCC------ccccceEEEeecCc--cc--ce-ee----eccceee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGS------SGVGLTAAVMKDPI--TN--EM-VL----EGGALVL  431 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~------s~~gLta~~~~~~~--~g--~~-~l----~~Galvl  431 (621)
                      .+||+||||+|||++++.+++.+.....    .+|.-.      .+..+- -...+..  .+  .. .+    ...+ ..
T Consensus        40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idgas~~~vddIr~l~e~~~~~p-~~  117 (563)
T PRK06647         40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDGASNTSVQDVRQIKEEIMFPP-AS  117 (563)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecCcccCCHHHHHHHHHHHHhch-hc
Confidence            4899999999999999999998643210    011000      000000 0111110  00  00 00    0011 23


Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ++..|++|||+++|+....++|+..||+-             |..+.+| +|.++.              .|+++|.||+
T Consensus       118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vfI~~tte~~--------------kL~~tI~SRc  170 (563)
T PRK06647        118 SRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVFIFATTEVH--------------KLPATIKSRC  170 (563)
T ss_pred             CCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEEEEecCChH--------------HhHHHHHHhc
Confidence            46679999999999999999999999862             2334444 444442              4889999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~i  532 (621)
                      . .+ -...++.+.-...++.+
T Consensus       171 ~-~~-~f~~l~~~el~~~L~~i  190 (563)
T PRK06647        171 Q-HF-NFRLLSLEKIYNMLKKV  190 (563)
T ss_pred             e-EE-EecCCCHHHHHHHHHHH
Confidence            4 33 33334444433333333

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=9.8e-06  Score=83.29  Aligned_cols=138  Identities=21%  Similarity=0.335  Sum_probs=91.2

Q ss_pred             CCCeeEecCCCCCCh------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc
Q psy11213        433 DQGICCIDEFDKLPD------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI  500 (621)
Q Consensus       433 d~gi~~IDEidk~~~------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~  500 (621)
                      +.||+|||||||+..            ..|.-|+...|..+++- |-|.+.+-+  ..+|||     |.|.    ++.-.
T Consensus       250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkTdH--ILFIas-----GAFh----~sKPS  317 (444)
T COG1220         250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKTDH--ILFIAS-----GAFH----VAKPS  317 (444)
T ss_pred             hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-cccccccce--EEEEec-----Ccee----cCChh
Confidence            569999999999532            23456777777666653 445443322  345554     3332    23334


Q ss_pred             CCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Q psy11213        501 QLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVK  578 (621)
Q Consensus       501 ~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~  578 (621)
                      +|-|.|--||. |.+-.+..+.+.-.+|..                 .-...++++|.+..+..  ...+++++.+.|++
T Consensus       318 DLiPELQGRfP-IRVEL~~Lt~~Df~rILt-----------------ep~~sLikQY~aLlkTE~v~l~FtddaI~~iAe  379 (444)
T COG1220         318 DLIPELQGRFP-IRVELDALTKEDFERILT-----------------EPKASLIKQYKALLKTEGVELEFTDDAIKRIAE  379 (444)
T ss_pred             hcChhhcCCCc-eEEEcccCCHHHHHHHHc-----------------CcchHHHHHHHHHHhhcCeeEEecHHHHHHHHH
Confidence            78899999995 667777776665554442                 12356799999998876  67789999999999


Q ss_pred             HHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213        579 AYTELRKVARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       579 ~y~~lR~~~~~~~~~~~~t~R~leslir  606 (621)
                      ...++....      -.+..|.|..++.
T Consensus       380 iA~~vN~~~------ENIGARRLhTvlE  401 (444)
T COG1220         380 IAYQVNEKT------ENIGARRLHTVLE  401 (444)
T ss_pred             HHHHhcccc------cchhHHHHHHHHH
Confidence            877765442      2367788776653

>PRK05642 DNA replication initiation factor; Validated

Probab=98.26  E-value=1e-05  Score=81.66  Aligned_cols=160  Identities=19%  Similarity=0.223  Sum_probs=84.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      +++|+|++|+|||.|++++++.+.    +..|.+...     +...      ...+ ++    ...+..+++||+++...
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~-----~~~~------~~~~-~~----~~~~~d~LiiDDi~~~~  110 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE-----LLDR------GPEL-LD----NLEQYELVCLDDLDVIA  110 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH-----HHhh------hHHH-HH----hhhhCCEEEEechhhhc
Confidence            789999999999999999987532    222322111     1000      0000 00    01123589999999764


Q ss_pred             h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCCCCh
Q psy11213        447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDKPDR  522 (621)
Q Consensus       447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~~d~  522 (621)
                      .  ..+..|+..++.-.            ..+..+|.|+|-....|         ..+.+.|.|||-  +++- ...|+.
T Consensus       111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l---------~~~~~~L~SRl~~gl~~~-l~~~~~  168 (234)
T PRK05642        111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPREL---------PIKLPDLKSRLTLALVFQ-MRGLSD  168 (234)
T ss_pred             CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHc---------CccCccHHHHHhcCeeee-cCCCCH
Confidence            3  33456777665311            11123444444221111         124688999983  3333 344444


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213        523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL  602 (621)
Q Consensus       523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le  602 (621)
                      +....+.+.                            .|...+..+++++.++|.+..              .-+.|.++
T Consensus       169 e~~~~il~~----------------------------ka~~~~~~l~~ev~~~L~~~~--------------~~d~r~l~  206 (234)
T PRK05642        169 EDKLRALQL----------------------------RASRRGLHLTDEVGHFILTRG--------------TRSMSALF  206 (234)
T ss_pred             HHHHHHHHH----------------------------HHHHcCCCCCHHHHHHHHHhc--------------CCCHHHHH
Confidence            444333331                            233334678888888887632              12577777


Q ss_pred             HHHHHHHH
Q psy11213        603 AILRLSTA  610 (621)
Q Consensus       603 slirla~A  610 (621)
                      +++..-..
T Consensus       207 ~~l~~l~~  214 (234)
T PRK05642        207 DLLERLDQ  214 (234)
T ss_pred             HHHHHHHH
Confidence            76665543

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.25  E-value=7.3e-06  Score=88.32  Aligned_cols=134  Identities=17%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCC--CccccceEEEeecCcc-cceeeeccce-eecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRG--SSGVGLTAAVMKDPIT-NEMVLEGGAL-VLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~--~s~~gLta~~~~~~~~-g~~~l~~Gal-vlAd~gi~~IDEidk~  445 (621)
                      ++||+||||+|||++++.+++.+....... +..  .....+.+........ .+..-+.... ..++..+++|||++.+
T Consensus        41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l  120 (367)
T PRK14970         41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML  120 (367)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc
Confidence            799999999999999999988754321110 000  0000000000000000 0000000111 1345679999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      .....+.++..||+.             +..+.+|.++|..             -.+.+++.||+  .++-...++.++-
T Consensus       121 ~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~-------------~kl~~~l~sr~--~~v~~~~~~~~~l  172 (367)
T PRK14970        121 SSAAFNAFLKTLEEP-------------PAHAIFILATTEK-------------HKIIPTILSRC--QIFDFKRITIKDI  172 (367)
T ss_pred             CHHHHHHHHHHHhCC-------------CCceEEEEEeCCc-------------ccCCHHHHhcc--eeEecCCccHHHH
Confidence            998889999888752             2233444444422             15788999999  3444555554444


Q ss_pred             HHHHHHH
Q psy11213        526 LKLAQHI  532 (621)
Q Consensus       526 ~~ia~~i  532 (621)
                      ......+
T Consensus       173 ~~~l~~~  179 (367)
T PRK14970        173 KEHLAGI  179 (367)
T ss_pred             HHHHHHH
Confidence            4344333

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.25  E-value=2.1e-06  Score=85.79  Aligned_cols=174  Identities=20%  Similarity=0.300  Sum_probs=94.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      .++|+|++|+|||.|++++++.+-      +.+|.+....... ... ...+....++  .   --+.+-.++|||+++.
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~-~~~~~~~~~~--~---~~~~~~DlL~iDDi~~  108 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FAD-ALRDGEIEEF--K---DRLRSADLLIIDDIQF  108 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHH-HHHTTSHHHH--H---HHHCTSSEEEEETGGG
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHH-HHHcccchhh--h---hhhhcCCEEEEecchh
Confidence            689999999999999999987632      2233322111000 000 0000000000  0   0122457999999999


Q ss_pred             CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213        445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD  521 (621)
Q Consensus       445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d  521 (621)
                      +....  +..|...++.-.    ..|        -.+|.|++-....         --.+.+.|.|||.- ..+-...|+
T Consensus       109 l~~~~~~q~~lf~l~n~~~----~~~--------k~li~ts~~~P~~---------l~~~~~~L~SRl~~Gl~~~l~~pd  167 (219)
T PF00308_consen  109 LAGKQRTQEELFHLFNRLI----ESG--------KQLILTSDRPPSE---------LSGLLPDLRSRLSWGLVVELQPPD  167 (219)
T ss_dssp             GTTHHHHHHHHHHHHHHHH----HTT--------SEEEEEESS-TTT---------TTTS-HHHHHHHHCSEEEEE----
T ss_pred             hcCchHHHHHHHHHHHHHH----hhC--------CeEEEEeCCCCcc---------ccccChhhhhhHhhcchhhcCCCC
Confidence            87765  566766665421    011        2334444322111         12478899999953 233346666


Q ss_pred             hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213        522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL  601 (621)
Q Consensus       522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l  601 (621)
                      .+....++++.                            |+..+..+++++.++|.+.+              .-++|.|
T Consensus       168 ~~~r~~il~~~----------------------------a~~~~~~l~~~v~~~l~~~~--------------~~~~r~L  205 (219)
T PF00308_consen  168 DEDRRRILQKK----------------------------AKERGIELPEEVIEYLARRF--------------RRDVREL  205 (219)
T ss_dssp             HHHHHHHHHHH----------------------------HHHTT--S-HHHHHHHHHHT--------------TSSHHHH
T ss_pred             HHHHHHHHHHH----------------------------HHHhCCCCcHHHHHHHHHhh--------------cCCHHHH
Confidence            66555555443                            33345679999999988642              2368999


Q ss_pred             HHHHHHHHHHHHh
Q psy11213        602 LAILRLSTALARL  614 (621)
Q Consensus       602 eslirla~A~Akl  614 (621)
                      ++++.--.|+|++
T Consensus       206 ~~~l~~l~~~~~~  218 (219)
T PF00308_consen  206 EGALNRLDAYAQL  218 (219)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999888888876

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.25  E-value=5.8e-06  Score=93.97  Aligned_cols=131  Identities=19%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCC--------CccccceEEEeecCccc----ce-eeecc---cee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRG--------SSGVGLTAAVMKDPITN----EM-VLEGG---ALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~--------~s~~gLta~~~~~~~~g----~~-~l~~G---alv  430 (621)
                      .+||+||||+|||++++.+++.+.....    -+|.-        .+...+   ...+..+.    +. .+...   .-.
T Consensus        40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~---~eid~~s~~~v~~ir~l~~~~~~~p~  116 (576)
T PRK14965         40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV---FEIDGASNTGVDDIRELRENVKYLPS  116 (576)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe---eeeeccCccCHHHHHHHHHHHHhccc
Confidence            3699999999999999999988542110    00100        000000   01111000    00 00000   012


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .++..|++|||+++|+....++|+..||+-             +..+. |++|.+|.              .|+++++||
T Consensus       117 ~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~fIl~t~~~~--------------kl~~tI~SR  169 (576)
T PRK14965        117 RSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKFIFATTEPH--------------KVPITILSR  169 (576)
T ss_pred             cCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEEEEEeCChh--------------hhhHHHHHh
Confidence            346689999999999999999999999962             23334 44554453              589999999


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      +  ..+-+..++.+.-......++
T Consensus       170 c--~~~~f~~l~~~~i~~~L~~i~  191 (576)
T PRK14965        170 C--QRFDFRRIPLQKIVDRLRYIA  191 (576)
T ss_pred             h--hhhhcCCCCHHHHHHHHHHHH
Confidence            9  333334444444333444443

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.23  E-value=4e-06  Score=91.28  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=25.7

Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~  459 (621)
                      .++..|++|||+++|+.+.++.|+..||+
T Consensus       125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEe  153 (397)
T PRK14955        125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEE  153 (397)
T ss_pred             cCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence            45677999999999999999999999985

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.23  E-value=3.3e-06  Score=90.42  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      .|++++||||||||.|+..+...+   ...+|.-.+.+.|.....    ++    ..|.+  +.-.+++|||+..++-+.
T Consensus       210 ~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~----~~----~lg~v--~~~DlLI~DEvgylp~~~  276 (449)
T TIGR02688       210 YNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIS----TR----QIGLV--GRWDVVAFDEVATLKFAK  276 (449)
T ss_pred             CcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHH----HH----HHhhh--ccCCEEEEEcCCCCcCCc
Confidence            399999999999999999876551   122343333333332111    11    12222  234689999998854333


Q ss_pred             ----hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCC
Q psy11213        450 ----RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP  485 (621)
Q Consensus       450 ----~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np  485 (621)
                          ...|-..|+++..+..+  ..  ..+.++++--.|-
T Consensus       277 ~~~~v~imK~yMesg~fsRG~--~~--~~a~as~vfvGNi  312 (449)
T TIGR02688       277 PKELIGILKNYMESGSFTRGD--ET--KSSDASFVFLGNV  312 (449)
T ss_pred             hHHHHHHHHHHHHhCceeccc--ee--eeeeeEEEEEccc
Confidence                36677779999988733  22  3344455444443

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.21  E-value=1e-05  Score=80.89  Aligned_cols=164  Identities=22%  Similarity=0.249  Sum_probs=93.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEE-EeecCcccce-eeeccceeecCCCeeEecCCCC-CC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAA-VMKDPITNEM-VLEGGALVLADQGICCIDEFDK-LP  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~-~~~~~~~g~~-~l~~GalvlAd~gi~~IDEidk-~~  446 (621)
                      .|+||.|++|||||+++|++......           .||--- +.++. -+.. .+-.-.--....=|+|+|++.= ..
T Consensus        53 nnvLL~G~rGtGKSSlVkall~~y~~-----------~GLRlIev~k~~-L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~  120 (249)
T PF05673_consen   53 NNVLLWGARGTGKSSLVKALLNEYAD-----------QGLRLIEVSKED-LGDLPELLDLLRDRPYKFILFCDDLSFEEG  120 (249)
T ss_pred             cceEEecCCCCCHHHHHHHHHHHHhh-----------cCceEEEECHHH-hccHHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence            39999999999999999998876321           011110 00000 0000 0000000012356899999753 34


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCCCCC-------cccccCCCHhHhccccEEEEe
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNPKRS-------IEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~~~~-------~~~~~~L~~aLlsRFDli~~~  516 (621)
                      +..-..|-.+||         |.....|.++.|.||+|..   .-.|..+.+       ..+.++=.-+|-+||. +.+.
T Consensus       121 d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG-L~l~  190 (249)
T PF05673_consen  121 DTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG-LWLS  190 (249)
T ss_pred             cHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC-cEEE
Confidence            444556666665         3334558899999999974   222222221       1122222236889997 5666


Q ss_pred             cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCC-HHHHHHHHHHHHcC
Q psy11213        517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPID-MSLVRRYIDLCKGK  564 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~-~~~lr~~i~~ar~~  564 (621)
                      ...|+.+.-.+|+++.+..+.         -.++ .+.-++.++||...
T Consensus       191 F~~~~q~~YL~IV~~~~~~~g---------~~~~~e~l~~~Al~wa~~r  230 (249)
T PF05673_consen  191 FYPPDQEEYLAIVRHYAERYG---------LELDEEELRQEALQWALRR  230 (249)
T ss_pred             ecCCCHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHHc
Confidence            688899999999998875331         1233 34446667777654

>KOG0744|consensus

Probab=98.19  E-value=3.2e-06  Score=86.24  Aligned_cols=134  Identities=24%  Similarity=0.315  Sum_probs=78.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec----------CCC---ee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA----------DQG---IC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA----------d~g---i~  437 (621)
                      =|||-||||||||+|.|++|+.+.  +.+.++..-+. |.. +--......|--|.|.+|.-          |.|   .+
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~-liE-inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv  254 (423)
T KOG0744|consen  179 LILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQ-LIE-INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV  254 (423)
T ss_pred             EEEEeCCCCCChhHHHHHHHHhhe--eeecCccccce-EEE-EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence            689999999999999999998753  33333322110 110 00000011232233322211          222   57


Q ss_pred             EecCCCCCChh---------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCC
Q psy11213        438 CIDEFDKLPDA---------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQL  502 (621)
Q Consensus       438 ~IDEidk~~~~---------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L  502 (621)
                      +|||.+.+...               .-++++.-|++=           +-...+.++||+|-..             .|
T Consensus       255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------K~~~NvliL~TSNl~~-------------si  310 (423)
T KOG0744|consen  255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------KRYPNVLILATSNLTD-------------SI  310 (423)
T ss_pred             EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----------ccCCCEEEEeccchHH-------------HH
Confidence            89999874321               123444444431           1134589999999763             58


Q ss_pred             CHhHhccccEEEEecCCCChHHHHHHHHHHH
Q psy11213        503 PAALLSRFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       503 ~~aLlsRFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      +.|+.||=| +...+.+|......+|.+.-+
T Consensus       311 D~AfVDRAD-i~~yVG~Pt~~ai~~Ilksci  340 (423)
T KOG0744|consen  311 DVAFVDRAD-IVFYVGPPTAEAIYEILKSCI  340 (423)
T ss_pred             HHHhhhHhh-heeecCCccHHHHHHHHHHHH
Confidence            899999999 555568888887777766544

>KOG0728|consensus

Probab=98.18  E-value=1.5e-06  Score=85.68  Aligned_cols=129  Identities=21%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKL-  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~-  445 (621)
                      .+||+||||||||.|+++++.....-. .++|..     |....+   ..|.. ..-..++.|   -..|+|.||||.+ 
T Consensus       183 GvlLygppgtGktLlaraVahht~c~firvsgse-----lvqk~i---gegsr-mvrelfvmarehapsiifmdeidsig  253 (404)
T KOG0728|consen  183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE-----LVQKYI---GEGSR-MVRELFVMAREHAPSIIFMDEIDSIG  253 (404)
T ss_pred             ceEEecCCCCchhHHHHHHHhhcceEEEEechHH-----HHHHHh---hhhHH-HHHHHHHHHHhcCCceEeeecccccc
Confidence            799999999999999999998743322 122211     110000   01110 001122333   2479999999985 


Q ss_pred             ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                                +.+.|..++|.+.|-      +|-..+-  ..-||.|+|...             -|+++||+  |.| .
T Consensus       254 s~r~e~~~ggdsevqrtmlellnql------dgfeatk--nikvimatnrid-------------ild~allrpgrid-r  311 (404)
T KOG0728|consen  254 SSRVESGSGGDSEVQRTMLELLNQL------DGFEATK--NIKVIMATNRID-------------ILDPALLRPGRID-R  311 (404)
T ss_pred             cccccCCCCccHHHHHHHHHHHHhc------ccccccc--ceEEEEeccccc-------------cccHhhcCCCccc-c
Confidence                      355678899998873      3433332  357899999873             37888886  777 5


Q ss_pred             EEecCCCChHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~  530 (621)
                      -+-++.|+++....|.+
T Consensus       312 kiefp~p~e~ar~~ilk  328 (404)
T KOG0728|consen  312 KIEFPPPNEEARLDILK  328 (404)
T ss_pred             cccCCCCCHHHHHHHHH
Confidence            56678888887777665

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.18  E-value=4.3e-06  Score=92.05  Aligned_cols=136  Identities=20%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      +++|+|+||+|||.|++++++.+.      +..|.+...... .+..+. +.....++.  .  -......+++|||++.
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~-~~~~~~~f~--~--~~~~~~dvLlIDDi~~  205 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEFR--E--KYRKKVDVLLIDDVQF  205 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-hcccHHHHH--H--HHHhcCCEEEEechhh
Confidence            799999999999999999988642      223433211000 000000 000000000  0  0011346999999997


Q ss_pred             CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCC
Q psy11213        445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPD  521 (621)
Q Consensus       445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d  521 (621)
                      +...  .+..++..++.-.-    .|       ...|+++.++..          +--.+.+.+.|||. -..+-.+.||
T Consensus       206 l~~~~~~q~elf~~~n~l~~----~~-------k~iIitsd~~p~----------~l~~l~~rL~SR~~~gl~v~i~~pd  264 (440)
T PRK14088        206 LIGKTGVQTELFHTFNELHD----SG-------KQIVICSDREPQ----------KLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_pred             hcCcHHHHHHHHHHHHHHHH----cC-------CeEEEECCCCHH----------HHHHHHHHHhhHHhcCceEeeCCCC
Confidence            6432  34455555432110    11       123343333321          11136788999995 2355668888


Q ss_pred             hHHHHHHHHHHH
Q psy11213        522 RDNDLKLAQHIT  533 (621)
Q Consensus       522 ~~~d~~ia~~il  533 (621)
                      .+....|++...
T Consensus       265 ~e~r~~IL~~~~  276 (440)
T PRK14088        265 EETRKKIARKML  276 (440)
T ss_pred             HHHHHHHHHHHH
Confidence            888888777654

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=1.3e-05  Score=91.59  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             c-EEEeCCCCcchhHHHHHHHhhccccEEe-----cCCC------CccccceEEEeecCc--cc--ce-e-e---eccce
Q psy11213        371 N-ICLMGDPGVAKSQLLSYIERLARRSQYT-----TGRG------SSGVGLTAAVMKDPI--TN--EM-V-L---EGGAL  429 (621)
Q Consensus       371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~~------~s~~gLta~~~~~~~--~g--~~-~-l---~~Gal  429 (621)
                      | +||+||+|+|||++++.+++.+.-...+     +|.-      ....... -...+..  .+  .. . +   ...+ 
T Consensus        40 hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir~li~~~~~~P-  117 (614)
T PRK14971         40 HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIRNLIEQVRIPP-  117 (614)
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHHHHHHHHhhCc-
Confidence            5 7999999999999999999975311100     1100      0000000 0011111  00  00 0 0   0011 


Q ss_pred             eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      ..++..|++|||+++|+.+.+++|+..||+-             |..+.+| +|.++.              .|.++|.|
T Consensus       118 ~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~tifIL~tt~~~--------------kIl~tI~S  170 (614)
T PRK14971        118 QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYAIFILATTEKH--------------KILPTILS  170 (614)
T ss_pred             ccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCch--------------hchHHHHh
Confidence            2345679999999999999999999999962             2223344 443332              58899999


Q ss_pred             ccc
Q psy11213        509 RFD  511 (621)
Q Consensus       509 RFD  511 (621)
                      |+.
T Consensus       171 Rc~  173 (614)
T PRK14971        171 RCQ  173 (614)
T ss_pred             hhh
Confidence            993

>KOG0735|consensus

Probab=98.16  E-value=6e-06  Score=91.77  Aligned_cols=131  Identities=26%  Similarity=0.338  Sum_probs=84.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      -+|||+||||||||.|+.+++...+-.+ .+-+|+.-    .|-..-.+++-..     +|   -.|..+|+|+||||.+
T Consensus       702 ~giLLyGppGcGKT~la~a~a~~~~~~f-isvKGPElL~KyIGaSEq~vR~lF~-----rA---~~a~PCiLFFDEfdSi  772 (952)
T KOG0735|consen  702 TGILLYGPPGCGKTLLASAIASNSNLRF-ISVKGPELLSKYIGASEQNVRDLFE-----RA---QSAKPCILFFDEFDSI  772 (952)
T ss_pred             cceEEECCCCCcHHHHHHHHHhhCCeeE-EEecCHHHHHHHhcccHHHHHHHHH-----Hh---hccCCeEEEecccccc
Confidence            3799999999999999999999865443 33333321    0000001111000     11   1234689999999997


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL  512 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl  512 (621)
                      .|.           .-+.|+.-|+.-.      |    |. .+.|+||+....             -+++|||+  |+| 
T Consensus       773 APkRGhDsTGVTDRVVNQlLTelDG~E------g----l~-GV~i~aaTsRpd-------------liDpALLRpGRlD-  827 (952)
T KOG0735|consen  773 APKRGHDSTGVTDRVVNQLLTELDGAE------G----LD-GVYILAATSRPD-------------LIDPALLRPGRLD-  827 (952)
T ss_pred             CcccCCCCCCchHHHHHHHHHhhcccc------c----cc-eEEEEEecCCcc-------------ccCHhhcCCCccc-
Confidence            553           3457777775321      1    11 256666665442             48899997  999 


Q ss_pred             EEEecCCCChHHHHHHHHHHHh
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ..+..+.|++.+..+|.+-+.+
T Consensus       828 ~~v~C~~P~~~eRl~il~~ls~  849 (952)
T KOG0735|consen  828 KLVYCPLPDEPERLEILQVLSN  849 (952)
T ss_pred             eeeeCCCCCcHHHHHHHHHHhh
Confidence            6777899999999999887755

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.16  E-value=5.8e-06  Score=96.90  Aligned_cols=132  Identities=17%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             c-EEEeCCCCcchhHHHHHHHhhccccE----EecCC----------CCccccceEEEeecCcc--c--c-eeeec---c
Q psy11213        371 N-ICLMGDPGVAKSQLLSYIERLARRSQ----YTTGR----------GSSGVGLTAAVMKDPIT--N--E-MVLEG---G  427 (621)
Q Consensus       371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~----------~~s~~gLta~~~~~~~~--g--~-~~l~~---G  427 (621)
                      | +||.|++|+|||++++.+++.+....    .-+|.          +.....+.   ..+..+  |  + ..+..   -
T Consensus        38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~---eidaas~~~Vd~iR~l~~~~~~  114 (824)
T PRK07764         38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT---EIDAASHGGVDDARELRERAFF  114 (824)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE---EecccccCCHHHHHHHHHHHHh
Confidence            5 79999999999999999999864210    00111          00011111   111100  0  0 00000   0


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      .-......|++|||+++|+....++|+..||+-             +..+. |++|.|+.              .|.++|
T Consensus       115 ~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~~~~fIl~tt~~~--------------kLl~TI  167 (824)
T PRK07764        115 APAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PEHLKFIFATTEPD--------------KVIGTI  167 (824)
T ss_pred             chhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh--------------hhhHHH
Confidence            012345679999999999999999999999972             22333 44444433              478899


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      .||+  ..+-+..++.+.-...+..++.
T Consensus       168 rSRc--~~v~F~~l~~~~l~~~L~~il~  193 (824)
T PRK07764        168 RSRT--HHYPFRLVPPEVMRGYLERICA  193 (824)
T ss_pred             Hhhe--eEEEeeCCCHHHHHHHHHHHHH
Confidence            9999  3444455555555555555543

>KOG0991|consensus

Probab=98.16  E-value=1.5e-06  Score=84.89  Aligned_cols=112  Identities=19%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      -|+++.||||||||+-+..+|+.+-...|..|..    .|.|+..+.-.     -..|.-+.=.+......|+++||.|.
T Consensus        49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL----ELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS  124 (333)
T KOG0991|consen   49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVL----ELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS  124 (333)
T ss_pred             CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh----hccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence            3999999999999999999888753322222211    13332221110     00111111111112346999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      |....|.+|...||=-+             ..+.+.-|||...             .+-+|+-||+-
T Consensus       125 MT~gAQQAlRRtMEiyS-------------~ttRFalaCN~s~-------------KIiEPIQSRCA  165 (333)
T KOG0991|consen  125 MTAGAQQALRRTMEIYS-------------NTTRFALACNQSE-------------KIIEPIQSRCA  165 (333)
T ss_pred             hhhHHHHHHHHHHHHHc-------------ccchhhhhhcchh-------------hhhhhHHhhhH
Confidence            99999999999998321             1245556778653             47789999984

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.12  E-value=2.9e-05  Score=88.30  Aligned_cols=150  Identities=19%  Similarity=0.174  Sum_probs=85.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-E--------ecCCCC--------ccccceEEEeecCc--cc-----ce--ee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-Y--------TTGRGS--------SGVGLTAAVMKDPI--TN-----EM--VL  424 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~--------~~g~~~--------s~~gLta~~~~~~~--~g-----~~--~l  424 (621)
                      .+||.|++|+|||++++.+++.+.-.. .        .+|...        +..++.   ..++.  .|     +.  ..
T Consensus        48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~---e~~a~s~~gvd~IReIie~~  124 (598)
T PRK09111         48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL---EMDAASHTGVDDIREIIESV  124 (598)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE---EecccccCCHHHHHHHHHHH
Confidence            599999999999999999999753211 0        011100        000000   00110  11     00  00


Q ss_pred             eccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH
Q psy11213        425 EGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA  504 (621)
Q Consensus       425 ~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~  504 (621)
                      +..+ +.++..|++|||+++|+....++|+..||+-             +..+.+|.++|...             .++.
T Consensus       125 ~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tte~~-------------kll~  177 (598)
T PRK09111        125 RYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATTEIR-------------KVPV  177 (598)
T ss_pred             Hhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeCChh-------------hhhH
Confidence            1111 3456789999999999999999999999862             33344444444321             4778


Q ss_pred             hHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        505 ALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       505 aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ++.||+  ..+-...++.++-....+.++...         ...++.+.+..++..+
T Consensus       178 tI~SRc--q~~~f~~l~~~el~~~L~~i~~ke---------gi~i~~eAl~lIa~~a  223 (598)
T PRK09111        178 TVLSRC--QRFDLRRIEADVLAAHLSRIAAKE---------GVEVEDEALALIARAA  223 (598)
T ss_pred             HHHhhe--eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence            899999  445555566555555555444311         1235555555555544

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.12  E-value=1.3e-05  Score=88.38  Aligned_cols=131  Identities=17%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-----cCC---------CCccccceEEEeecC--ccc-cee---ee-cc-c
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----TGR---------GSSGVGLTAAVMKDP--ITN-EMV---LE-GG-A  428 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~---------~~s~~gLta~~~~~~--~~g-~~~---l~-~G-a  428 (621)
                      .+||+||||+|||++++.+++.+-.....     +|.         +. ...+.   ..+.  ..| +-.   .+ .. .
T Consensus        41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~-~~d~~---~i~g~~~~gid~ir~i~~~l~~~  116 (451)
T PRK06305         41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT-SLDVL---EIDGASHRGIEDIRQINETVLFT  116 (451)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC-CCceE---EeeccccCCHHHHHHHHHHHHhh
Confidence            48999999999999999999875321100     000         00 00000   0010  000 000   00 00 0


Q ss_pred             eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213        429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS  508 (621)
Q Consensus       429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls  508 (621)
                      -..++..|++|||+++|+.+..++|+..||+-             +..+.+|.++|-.             ..|.++|.|
T Consensus       117 ~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~~Il~t~~~-------------~kl~~tI~s  170 (451)
T PRK06305        117 PSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVKFFLATTEI-------------HKIPGTILS  170 (451)
T ss_pred             hhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCceEEEEeCCh-------------HhcchHHHH
Confidence            02256789999999999999999999999862             2234455455432             158899999


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |+  ..+-...+++++-...+..++
T Consensus       171 Rc--~~v~f~~l~~~el~~~L~~~~  193 (451)
T PRK06305        171 RC--QKMHLKRIPEETIIDKLALIA  193 (451)
T ss_pred             hc--eEEeCCCCCHHHHHHHHHHHH
Confidence            99  445556666665555554443

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=1.5e-05  Score=90.98  Aligned_cols=153  Identities=17%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE-----ecCCCCc----cccceEEE-eecCc--cc-----ce--eeeccceee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY-----TTGRGSS----GVGLTAAV-MKDPI--TN-----EM--VLEGGALVL  431 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-----~~g~~~s----~~gLta~~-~~~~~--~g-----~~--~l~~Galvl  431 (621)
                      .+||+|+||+|||++++.+++.+.....     .+|.-.+    ..|....+ ..+..  .+     +.  .+.... ..
T Consensus        40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~  118 (585)
T PRK14950         40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-AL  118 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-cc
Confidence            4699999999999999999988532110     0010000    00000000 00110  00     00  001111 23


Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ++..|++|||+++|+.+..+.|+..||+-             +..+.+|.+++..             -.+.+++.||+.
T Consensus       119 ~~~kVvIIDEa~~L~~~a~naLLk~LEep-------------p~~tv~Il~t~~~-------------~kll~tI~SR~~  172 (585)
T PRK14950        119 ARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHAIFILATTEV-------------HKVPATILSRCQ  172 (585)
T ss_pred             CCeEEEEEeChHhCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCCh-------------hhhhHHHHhccc
Confidence            56789999999999999999999999862             1223344333322             137788999993


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                        .+.+..++..+-......+....         ...++.+.+..++.++
T Consensus       173 --~i~f~~l~~~el~~~L~~~a~~e---------gl~i~~eal~~La~~s  211 (585)
T PRK14950        173 --RFDFHRHSVADMAAHLRKIAAAE---------GINLEPGALEAIARAA  211 (585)
T ss_pred             --eeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence              33444455444333333333211         1235556666555544

>KOG1808|consensus

Probab=98.12  E-value=3.7e-06  Score=103.11  Aligned_cols=145  Identities=17%  Similarity=0.257  Sum_probs=109.3

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEecC-C-CCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCC
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTG-R-GSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFD  443 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~-~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEid  443 (621)
                      |..++||.||.|+|||.+++++|+...+-+.... . ......+.++- ....+|+..++-|+||.|  +|-.+++||++
T Consensus       439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y-~~~~~g~l~freg~LV~Alr~G~~~vlD~ln  517 (1856)
T KOG1808|consen  439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTY-VADDNGDLVFREGVLVQALRNGDWIVLDELN  517 (1856)
T ss_pred             CCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhh-hcCCCCCeeeehhHHHHHHHhCCEEEecccc
Confidence            6689999999999999999999998655433221 1 11112222211 112378889999999998  78899999999


Q ss_pred             CCChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        444 KLPDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       444 k~~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      .++.++..+|..+++. +.+.+.........+.++.+.||-||..       .+.+.-.+..++++||. .+...+.+.
T Consensus       518 la~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~-------~y~grk~lsRa~~~rf~-e~~f~~~~e  588 (1856)
T KOG1808|consen  518 LAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG-------TYGGRKILSRALRNRFI-ELHFDDIGE  588 (1856)
T ss_pred             ccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc-------ccchhhhhhhcccccch-hhhhhhcCc
Confidence            9999999999999988 8888887777777888899999999983       24455578999999994 444444443

>KOG0651|consensus

Probab=98.11  E-value=2.3e-06  Score=86.95  Aligned_cols=127  Identities=22%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe--cCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC--
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT--TGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL--  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~--  445 (621)
                      .++|+||||||||.+++++++...-....  ++.. .-.+|-.|..+++.    | -.+.-+   -.+|+|+||||..  
T Consensus       168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem----f-~yA~~~---~pciifmdeiDAigG  239 (388)
T KOG0651|consen  168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM----F-RYAREV---IPCIIFMDEIDAIGG  239 (388)
T ss_pred             eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH----H-HHHhhh---CceEEeehhhhhhcc
Confidence            68999999999999999999885433221  1111 11111111111111    0 001111   1389999999873  


Q ss_pred             ---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213        446 ---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW  514 (621)
Q Consensus       446 ---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~  514 (621)
                               +..++..|.+.++|-      .|  ..-..|+-+|.|+|...             .|.+||++  |.| .+
T Consensus       240 Rr~se~Ts~dreiqrTLMeLlnqm------dg--fd~l~rVk~ImatNrpd-------------tLdpaLlRpGRld-rk  297 (388)
T KOG0651|consen  240 RRFSEGTSSDREIQRTLMELLNQM------DG--FDTLHRVKTIMATNRPD-------------TLDPALLRPGRLD-RK  297 (388)
T ss_pred             EEeccccchhHHHHHHHHHHHHhh------cc--chhcccccEEEecCCcc-------------ccchhhcCCcccc-ce
Confidence                     233455666666531      11  23356788999999763             58888886  776 55


Q ss_pred             EecCCCChHHHHH
Q psy11213        515 LIQDKPDRDNDLK  527 (621)
Q Consensus       515 ~~~d~~d~~~d~~  527 (621)
                      +..+.|++.....
T Consensus       298 ~~iPlpne~~r~~  310 (388)
T KOG0651|consen  298 VEIPLPNEQARLG  310 (388)
T ss_pred             eccCCcchhhcee
Confidence            6666777665554

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.4e-05  Score=91.53  Aligned_cols=179  Identities=17%  Similarity=0.208  Sum_probs=114.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCcccceeee----ccceeecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMVLE----GGALVLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~l~----~GalvlAd~gi  436 (621)
                      |-+|+|+||+|||.++..+|.....+          +++-+.++    |.|+..+   .|+|.-.    -..+-.+.+-|
T Consensus       193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~----LvAGaky---RGeFEeRlk~vl~ev~~~~~vI  265 (786)
T COG0542         193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS----LVAGAKY---RGEFEERLKAVLKEVEKSKNVI  265 (786)
T ss_pred             CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----Hhccccc---cCcHHHHHHHHHHHHhcCCCeE
Confidence            78899999999999999988763221          12211111    1111111   2322100    00112233568


Q ss_pred             eEecCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        437 CCIDEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       437 ~~IDEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      +||||++.+-         -+.-+.|-.++..+++               .+|||+.-.+        +..-++-++||-
T Consensus       266 LFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL---------------~~IGATT~~E--------YRk~iEKD~AL~  322 (786)
T COG0542         266 LFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL---------------RCIGATTLDE--------YRKYIEKDAALE  322 (786)
T ss_pred             EEEechhhhcCCCcccccccchhhhhHHHHhcCCe---------------EEEEeccHHH--------HHHHhhhchHHH
Confidence            9999998742         1233444455555443               4577776543        334467889999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      +||  .-+.++.|+.+.-..|.+-+-..+...     ..-.++.+.|........++  ...|++.|.+.|-+.-..+|-
T Consensus       323 RRF--Q~V~V~EPs~e~ti~ILrGlk~~yE~h-----H~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l  395 (786)
T COG0542         323 RRF--QKVLVDEPSVEDTIAILRGLKERYEAH-----HGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL  395 (786)
T ss_pred             hcC--ceeeCCCCCHHHHHHHHHHHHHHHHHc-----cCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence            999  677889999999999988775543221     12467888999999988887  888999999999887766655


Q ss_pred             H
Q psy11213        586 V  586 (621)
Q Consensus       586 ~  586 (621)
                      .
T Consensus       396 ~  396 (786)
T COG0542         396 E  396 (786)
T ss_pred             c
Confidence            3

>PRK04132 replication factor C small subunit; Provisional

Probab=98.09  E-value=1.5e-05  Score=93.16  Aligned_cols=149  Identities=13%  Similarity=0.075  Sum_probs=87.4

Q ss_pred             ccEEEeC--CCCcchhHHHHHHHhhccccEEecCCCCccccceEEE------eecCcccceeeeccceeecCCCeeEecC
Q psy11213        370 INICLMG--DPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAV------MKDPITNEMVLEGGALVLADQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G--~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~------~~~~~~g~~~l~~GalvlAd~gi~~IDE  441 (621)
                      +|-+.-|  |.+.|||++++++|+.+-..    +....-..+.|+.      +++. -.++.- -..+..++..|++|||
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rgid~IR~i-Ik~~a~-~~~~~~~~~KVvIIDE  638 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERGINVIREK-VKEFAR-TKPIGGASFKIIFLDE  638 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCcccHHHHHHH-HHHHHh-cCCcCCCCCEEEEEEC
Confidence            4555667  88889999999999885211    0101111122221      1110 001000 0001001235999999


Q ss_pred             CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      +|+|+.+.+++|+..||+-             +..+.+|.+||+..             .+.++|.||+  ..+-+..++
T Consensus       639 aD~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC--~~i~F~~ls  690 (846)
T PRK04132        639 ADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRC--AIFRFRPLR  690 (846)
T ss_pred             cccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhc--eEEeCCCCC
Confidence            9999999999999999962             33467788888773             6889999999  444555666


Q ss_pred             hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      .++-......+....         .-.++.+.+...+..+
T Consensus       691 ~~~i~~~L~~I~~~E---------gi~i~~e~L~~Ia~~s  721 (846)
T PRK04132        691 DEDIAKRLRYIAENE---------GLELTEEGLQAILYIA  721 (846)
T ss_pred             HHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc
Confidence            665555555554321         1224556666555544

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.09  E-value=1.3e-05  Score=88.35  Aligned_cols=138  Identities=14%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      +++|+|++|+|||.|++++++.+.      +..|.+...... .+..+. ... .+..  +.-.-...+-.+++|||++.
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l-~~~-~~~~--~~~~~~~~~~dvLiIDDiq~  217 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDIL-QKT-HKEI--EQFKNEICQNDVLIIDDVQF  217 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HHh-hhHH--HHHHHHhccCCEEEEecccc
Confidence            799999999999999999988532      122332211000 000000 000 0000  00000012346899999998


Q ss_pred             CC--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCC
Q psy11213        445 LP--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPD  521 (621)
Q Consensus       445 ~~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d  521 (621)
                      +.  +..+..|+..++...-    .|        -.+|.|+|-..         ..--.+.+.|.|||. -+.+-...|+
T Consensus       218 l~~k~~~~e~lf~l~N~~~~----~~--------k~iIltsd~~P---------~~l~~l~~rL~SR~~~Gl~~~L~~pd  276 (450)
T PRK14087        218 LSYKEKTNEIFFTIFNNFIE----ND--------KQLFFSSDKSP---------ELLNGFDNRLITRFNMGLSIAIQKLD  276 (450)
T ss_pred             ccCCHHHHHHHHHHHHHHHH----cC--------CcEEEECCCCH---------HHHhhccHHHHHHHhCCceeccCCcC
Confidence            76  4456667666653210    11        13455555321         111247899999995 3455567777


Q ss_pred             hHHHHHHHHHHHh
Q psy11213        522 RDNDLKLAQHITY  534 (621)
Q Consensus       522 ~~~d~~ia~~il~  534 (621)
                      .+....+.++.+.
T Consensus       277 ~e~r~~iL~~~~~  289 (450)
T PRK14087        277 NKTATAIIKKEIK  289 (450)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776654

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.08  E-value=9.2e-06  Score=78.97  Aligned_cols=65  Identities=12%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ++..|++|||+++|+++.++.|+..||+.             +..+.+|.++|..             ..+.+++.||+ 
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~-------------~~l~~~i~sr~-  147 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP-------------EKLLPTIRSRC-  147 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh-------------HhChHHHHhhc-
Confidence            45579999999999999999999999862             2233444444422             15889999999 


Q ss_pred             EEEEecCCCChHH
Q psy11213        512 LLWLIQDKPDRDN  524 (621)
Q Consensus       512 li~~~~d~~d~~~  524 (621)
                       ..+....++.++
T Consensus       148 -~~~~~~~~~~~~  159 (188)
T TIGR00678       148 -QVLPFPPLSEEA  159 (188)
T ss_pred             -EEeeCCCCCHHH
Confidence             345455555443

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.07  E-value=1.4e-05  Score=88.16  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEE-----EeecCcc--c---ceeeeccce---eecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAA-----VMKDPIT--N---EMVLEGGAL---VLAD  433 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~-----~~~~~~~--g---~~~l~~Gal---vlAd  433 (621)
                      --|+.|+-|||||+++|.+|+.+.-..-..+.-...    .+++.+     +..|..+  |   -..+.-...   +.+.
T Consensus        40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r  119 (515)
T COG2812          40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR  119 (515)
T ss_pred             hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence            568999999999999999999864332111110000    000000     1111111  1   000111111   2234


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ..|.+|||.++++....++||.-+|+---.+            ..|+||++|.              .+|..++||+
T Consensus       120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV------------~FIlATTe~~--------------Kip~TIlSRc  170 (515)
T COG2812         120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHV------------KFILATTEPQ--------------KIPNTILSRC  170 (515)
T ss_pred             ceEEEEecHHhhhHHHHHHHhcccccCccCe------------EEEEecCCcC--------------cCchhhhhcc
Confidence            4699999999999999999999998743222            4688999987              6999999998

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.06  E-value=1.7e-05  Score=90.21  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .++.-|++|||+++|+....++|+..||+-             +..+ .|++|.++.              .|.+++.||
T Consensus       125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------------p~~tv~IL~t~~~~--------------kLl~TI~SR  177 (620)
T PRK14954        125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------------PPHAIFIFATTELH--------------KIPATIASR  177 (620)
T ss_pred             cCCCEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh--------------hhhHHHHhh
Confidence            456789999999999999999999999971             2223 344554432              588899999


Q ss_pred             ccEEEEecCCCChHH
Q psy11213        510 FDLLWLIQDKPDRDN  524 (621)
Q Consensus       510 FDli~~~~d~~d~~~  524 (621)
                      +  ..+-...++.++
T Consensus       178 c--~~vef~~l~~~e  190 (620)
T PRK14954        178 C--QRFNFKRIPLDE  190 (620)
T ss_pred             c--eEEecCCCCHHH
Confidence            9  333334444443

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.04  E-value=1.6e-06  Score=87.07  Aligned_cols=113  Identities=22%  Similarity=0.274  Sum_probs=80.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh-------ccccE-EecC--CCCcc-ccceEEEeecCcccceeeeccceeecCCCeeE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL-------ARRSQ-YTTG--RGSSG-VGLTAAVMKDPITNEMVLEGGALVLADQGICC  438 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~-------~pr~~-~~~g--~~~s~-~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~  438 (621)
                      .++||.||.|.|||-|++.+-.+       ..+-+ ..+.  .+-++ ..|++ .++...+|.-.-.+|.|-.||||.+|
T Consensus       209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg-hvkgaftga~~~r~gllrsadggmlf  287 (531)
T COG4650         209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG-HVKGAFTGARESREGLLRSADGGMLF  287 (531)
T ss_pred             CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh-hhccccccchhhhhhhhccCCCceEe
Confidence            49999999999999999998665       11111 1111  11111 11343 33444567667788999999999999


Q ss_pred             ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCC
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP  485 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np  485 (621)
                      +|||..+..+.|..|+.++|+..+--  -|-.....+++.+||.+-.
T Consensus       288 ldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtvr  332 (531)
T COG4650         288 LDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTVR  332 (531)
T ss_pred             hHhhhhcCccHHHHHHHHHHhhccCC--CCCccccccchHHhhhhHH
Confidence            99999999999999999999876543  3555566777888887643

>PF13337 Lon_2: Putative ATP-dependent Lon protease

Probab=97.95  E-value=9.1e-05  Score=80.01  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC---
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP---  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~---  446 (621)
                      .|++=.||.|||||.+-+   +++|-+...+|...|.+.|..    +..+|    +.|.+..  --++++||+..++   
T Consensus       209 ~NliELgPrGTGKS~vy~---eiSp~~~liSGG~~T~A~LFy----n~~~~----~~GlV~~--~D~VafDEv~~i~f~d  275 (457)
T PF13337_consen  209 YNLIELGPRGTGKSYVYK---EISPYGILISGGQVTVAKLFY----NMSTG----QIGLVGR--WDVVAFDEVAGIKFKD  275 (457)
T ss_pred             cceEEEcCCCCCceeehh---hcCcccEEEECCCcchHHhee----eccCC----cceeeee--ccEEEEEeccCcccCC
Confidence            599999999999999965   556778888888777776664    33344    3454443  4689999998876   


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                      ++....|-..||++..+..+    .+..+.++++-..|..
T Consensus       276 ~d~i~imK~YMesG~fsRG~----~~i~a~as~vf~GNi~  311 (457)
T PF13337_consen  276 KDEIQIMKDYMESGSFSRGK----EEINADASMVFVGNIN  311 (457)
T ss_pred             hHHHHHHHHHHhccceeecc----cccccceeEEEEcCcC
Confidence            34446777789999999854    2667778888888865

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.89  E-value=1.4e-05  Score=84.03  Aligned_cols=116  Identities=19%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             cc-EEEeCCCCcchhHHHHHHHhhccccEEe---------------cCCCCccccceEEEeecCc-cccee---eeccce
Q psy11213        370 IN-ICLMGDPGVAKSQLLSYIERLARRSQYT---------------TGRGSSGVGLTAAVMKDPI-TNEMV---LEGGAL  429 (621)
Q Consensus       370 i~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~---------------~g~~~s~~gLta~~~~~~~-~g~~~---l~~Gal  429 (621)
                      .| +||.||||+|||+++.++++.+......               .|....-..++++..+... .-+-+   .+....
T Consensus        24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~  103 (325)
T COG0470          24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE  103 (325)
T ss_pred             CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence            47 9999999999999999999875421100               0111111112222221110 00000   000001


Q ss_pred             e--ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        430 V--LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       430 v--lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      .  .+..-|++|||+|.|+.+..++++..||+.             +.++.+|-++|-..             .+.+++.
T Consensus       104 ~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~~~~~~il~~n~~~-------------~il~tI~  157 (325)
T COG0470         104 SPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------PKNTRFILITNDPS-------------KILPTIR  157 (325)
T ss_pred             CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CCCeEEEEEcCChh-------------hccchhh
Confidence            1  123469999999999999999999999874             34566777777331             5777999


Q ss_pred             cccc
Q psy11213        508 SRFD  511 (621)
Q Consensus       508 sRFD  511 (621)
                      ||+-
T Consensus       158 SRc~  161 (325)
T COG0470         158 SRCQ  161 (325)
T ss_pred             hcce
Confidence            9993

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.88  E-value=4.7e-05  Score=84.49  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCCCcccccCCCH
Q psy11213        426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKRSIEQNIQLPA  504 (621)
Q Consensus       426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~~~~~~~~L~~  504 (621)
                      .|+|..|++|++=+=|+-|.+.+...-|+.+-+++.+.-  .+....++.+-.|||.+|-. +.+|.      .| .-.+
T Consensus       248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E~~~F~------~n-k~nE  318 (644)
T PRK15455        248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESEWQTFR------NN-KNNE  318 (644)
T ss_pred             CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHHHHHHh------cC-ccch
Confidence            589999998887777999999999999999998888754  24445678888999999975 22222      11 3468


Q ss_pred             hHhccccEEEEecCC-CChHHHHHHHHHHHhh
Q psy11213        505 ALLSRFDLLWLIQDK-PDRDNDLKLAQHITYV  535 (621)
Q Consensus       505 aLlsRFDli~~~~d~-~d~~~d~~ia~~il~~  535 (621)
                      ||+||.  +.+-+++ ..-.++.+|.+.+++.
T Consensus       319 A~~DRi--~~V~VPY~lr~~eE~kIYeKll~~  348 (644)
T PRK15455        319 AFLDRI--YIVKVPYCLRVSEEIKIYEKLLRN  348 (644)
T ss_pred             hhhceE--EEEeCCccCChhHHHHHHHHHhcC
Confidence            999998  3333333 3445677788877754

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.88  E-value=0.00012  Score=75.00  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++|+|+||+|||++++.+++.++
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcC
Confidence            689999999999999999998865

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0730|consensus

Probab=97.88  E-value=1.7e-05  Score=88.07  Aligned_cols=135  Identities=25%  Similarity=0.275  Sum_probs=85.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEec-CC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTT-GR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      -++|++||||||||.+++++++...--.+.. |.  .....|-+.+..+.      .+ .-+.-.+-..+|+|||+|.+-
T Consensus       219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~------~f-~~a~k~~~psii~IdEld~l~  291 (693)
T KOG0730|consen  219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRK------AF-AEALKFQVPSIIFIDELDALC  291 (693)
T ss_pred             CCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHH------HH-HHHhccCCCeeEeHHhHhhhC
Confidence            4799999999999999999999854222221 11  01111111111110      00 001111126899999999876


Q ss_pred             h----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-cccEEEE
Q psy11213        447 D----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-RFDLLWL  515 (621)
Q Consensus       447 ~----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-RFDli~~  515 (621)
                      +          ..-..|+..|+.-.           -.....||||+|...             .|.+++.+ ||| .-+
T Consensus       292 p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRfd-~ev  346 (693)
T KOG0730|consen  292 PKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRFD-REV  346 (693)
T ss_pred             CcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCCc-cee
Confidence            4          22346677775421           123467889988763             58889886 999 667


Q ss_pred             ecCCCChHHHHHHHHHHHhhh
Q psy11213        516 IQDKPDRDNDLKLAQHITYVH  536 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il~~~  536 (621)
                      .+..|+......|++...+.+
T Consensus       347 ~IgiP~~~~RldIl~~l~k~~  367 (693)
T KOG0730|consen  347 EIGIPGSDGRLDILRVLTKKM  367 (693)
T ss_pred             eecCCCchhHHHHHHHHHHhc
Confidence            778999999999999887654

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=8.7e-05  Score=79.61  Aligned_cols=192  Identities=18%  Similarity=0.176  Sum_probs=108.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc------EEecCCC-CccccceEE----EeecCcccceeee-----cccee-ec
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS------QYTTGRG-SSGVGLTAA----VMKDPITNEMVLE-----GGALV-LA  432 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~-~s~~gLta~----~~~~~~~g~~~l~-----~Galv-lA  432 (621)
                      .|++++|+||||||..++++++.+...      +|..... .+.-.....    ...-+.+|.-..+     ...+. ..
T Consensus        43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~  122 (366)
T COG1474          43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG  122 (366)
T ss_pred             ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence            389999999999999999998874332      3332221 110000000    0011112211000     00000 01


Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..-|+.+||+|.+.......|++...-.+     .+     ..++++++.+|-..        +  ...|.+.+.|||-.
T Consensus       123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~-----~~-----~~~v~vi~i~n~~~--------~--~~~ld~rv~s~l~~  182 (366)
T COG1474         123 KTVIVILDEVDALVDKDGEVLYSLLRAPG-----EN-----KVKVSIIAVSNDDK--------F--LDYLDPRVKSSLGP  182 (366)
T ss_pred             CeEEEEEcchhhhccccchHHHHHHhhcc-----cc-----ceeEEEEEEeccHH--------H--HHHhhhhhhhccCc
Confidence            12378999999998887666666654221     11     56788999999762        1  22467777777754


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc--C-CCCCCHHHHHHHHHHHHHHHHHhhc
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG--K-NPTVPSSLTEHIVKAYTELRKVARN  589 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~--~-~p~ls~~a~~~l~~~y~~lR~~~~~  589 (621)
                      .-+.+++.+                             .++|+.++..-..  . ...+++.+.+++.....+     ..
T Consensus       183 ~~I~F~pY~-----------------------------a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~-----~~  228 (366)
T COG1474         183 SEIVFPPYT-----------------------------AEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA-----ES  228 (366)
T ss_pred             ceeeeCCCC-----------------------------HHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH-----cC
Confidence            444444444                             4444444433211  2 566777777777654321     11


Q ss_pred             CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        590 SRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       590 ~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                            -..|....++|.|--.|.-+.++.|+
T Consensus       229 ------GDAR~aidilr~A~eiAe~~~~~~v~  254 (366)
T COG1474         229 ------GDARKAIDILRRAGEIAEREGSRKVS  254 (366)
T ss_pred             ------ccHHHHHHHHHHHHHHHHhhCCCCcC
Confidence                  15788888888888888877777664

>KOG1051|consensus

Probab=97.85  E-value=9.9e-05  Score=85.92  Aligned_cols=115  Identities=10%  Similarity=0.105  Sum_probs=73.5

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE---EecCCCC--ccccceEEE--eecCcccceeeeccceeecCCCeeEec
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRGS--SGVGLTAAV--MKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~~--s~~gLta~~--~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      ++.-+|+.||.|+|||.|++++|..+-.+.   ..-+...  ....+.++.  .+....|.  .-.+++-.-...|+++|
T Consensus       590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfd  667 (898)
T KOG1051|consen  590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFE  667 (898)
T ss_pred             CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEe
Confidence            567899999999999999999999853211   0001100  000011100  00000110  01123333356799999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                      ||+|+.+++++.|+++|+.|.++-+ .|....+. ++.||+|+|-.
T Consensus       668 eIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~k-N~I~IMTsn~~  711 (898)
T KOG1051|consen  668 EIEKAHPDVLNILLQLLDRGRLTDS-HGREVDFK-NAIFIMTSNVG  711 (898)
T ss_pred             chhhcCHHHHHHHHHHHhcCccccC-CCcEeecc-ceEEEEecccc
Confidence            9999999999999999999999876 46666654 38999999864

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.84  E-value=3.2e-05  Score=81.90  Aligned_cols=63  Identities=16%  Similarity=0.278  Sum_probs=46.3

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ..-|++|||+++|+.+..++|+..||+-             |.. +.|+.|.||.              .|.++++||+-
T Consensus       106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~ll~TI~SRc~  158 (328)
T PRK05707        106 GRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS--------------RLLPTIKSRCQ  158 (328)
T ss_pred             CCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh--------------hCcHHHHhhce
Confidence            4569999999999999999999999972             122 3456666665              58999999993


Q ss_pred             EEEEecCCCChHH
Q psy11213        512 LLWLIQDKPDRDN  524 (621)
Q Consensus       512 li~~~~d~~d~~~  524 (621)
                        .+.+..++.+.
T Consensus       159 --~~~~~~~~~~~  169 (328)
T PRK05707        159 --QQACPLPSNEE  169 (328)
T ss_pred             --eeeCCCcCHHH
Confidence              34445555443

>KOG0741|consensus

Probab=97.79  E-value=3.4e-06  Score=90.87  Aligned_cols=169  Identities=20%  Similarity=0.315  Sum_probs=99.2

Q ss_pred             CCCCCcccceeeecccccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc--EE
Q psy11213        321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS--QY  398 (621)
Q Consensus       321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~--~~  398 (621)
                      +..|-+-..+.-+.++-.+..+.|-+.++-.||-.    -.         .+||+||||||||.+||.+-+.+..-  -.
T Consensus       221 mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H----VK---------GiLLyGPPGTGKTLiARqIGkMLNArePKI  287 (744)
T KOG0741|consen  221 MGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH----VK---------GILLYGPPGTGKTLIARQIGKMLNAREPKI  287 (744)
T ss_pred             cccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc----ee---------eEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence            44466666666667777777888776666556531    11         68999999999999999998885321  11


Q ss_pred             ecCC--CCccccceEEEeecC---cccceeeeccceeecCCCeeEecCCCCC-------------ChhhhhhhHhhhcce
Q psy11213        399 TTGR--GSSGVGLTAAVMKDP---ITNEMVLEGGALVLADQGICCIDEFDKL-------------PDADRTAIHEVMEQQ  460 (621)
Q Consensus       399 ~~g~--~~s~~gLta~~~~~~---~~g~~~l~~GalvlAd~gi~~IDEidk~-------------~~~~~~~L~eame~q  460 (621)
                      +.|-  ..-.+|-+...+++-   ...+|.-.++.   +.=.|+++||||.+             .+..-+.|+.-|+. 
T Consensus       288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~---SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG-  363 (744)
T KOG0741|consen  288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN---SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG-  363 (744)
T ss_pred             cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc---CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-
Confidence            1111  011112111111110   12233221111   01158999999862             34455677776642 


Q ss_pred             EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCCCChHHHHHHHH
Q psy11213        461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~~d~~~d~~ia~  530 (621)
                               +-.|| ...||+-+|...             -+++|||+  ||. +-.-...||+.-..+|.+
T Consensus       364 ---------VeqLN-NILVIGMTNR~D-------------lIDEALLRPGRlE-VqmEIsLPDE~gRlQIl~  411 (744)
T KOG0741|consen  364 ---------VEQLN-NILVIGMTNRKD-------------LIDEALLRPGRLE-VQMEISLPDEKGRLQILK  411 (744)
T ss_pred             ---------HHhhh-cEEEEeccCchh-------------hHHHHhcCCCceE-EEEEEeCCCccCceEEEE
Confidence                     12233 268899999873             47889997  995 555567888776665543

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.72  E-value=3.9e-05  Score=67.61  Aligned_cols=99  Identities=19%  Similarity=0.304  Sum_probs=55.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh---
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA---  448 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~---  448 (621)
                      |.|.|+||+|||.+++.+++.+-+......  ...  .   ..+.+...-|   .|-   ....++++|||....+.   
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~--~~~--v---y~~~~~~~~w---~gY---~~q~vvi~DD~~~~~~~~~~   67 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT--KDS--V---YTRNPGDKFW---DGY---QGQPVVIIDDFGQDNDGYNY   67 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCC--CCc--E---EeCCCccchh---hcc---CCCcEEEEeecCccccccch
Confidence            579999999999999998876443220000  000  0   0011111111   010   13578999999988754   


Q ss_pred             -hhhhhHhhhcceEEEEecCCeE---EecCCcceEEeecC
Q psy11213        449 -DRTAIHEVMEQQTISIAKAGIM---TRLNARVSILAAAN  484 (621)
Q Consensus       449 -~~~~L~eame~q~isi~k~gi~---~~l~ar~~viAa~N  484 (621)
                       ....+...+.........|+..   ..+++ -.||+|+|
T Consensus        68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN  106 (107)
T PF00910_consen   68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN  106 (107)
T ss_pred             HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence             5566777777666655444432   33333 36677777

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.71  E-value=0.00022  Score=75.13  Aligned_cols=124  Identities=16%  Similarity=0.182  Sum_probs=72.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--c-cce--eee---ccceeecCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--T-NEM--VLE---GGALVLADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~-g~~--~l~---~GalvlAd~gi~~IDEi  442 (621)
                      -.|++||+|+||+++++.+++.+-...   ..+ +...+..-...+..  + .+.  ..+   -.+ ..++.-|++||+.
T Consensus        28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~---~~~-~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~a  102 (313)
T PRK05564         28 AHIIVGEDGIGKSLLAKEIALKILGKS---QQR-EYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNS  102 (313)
T ss_pred             eEEeECCCCCCHHHHHHHHHHHHcCCC---CCC-CCCCeEEeccccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEech
Confidence            348999999999999999998642100   000 00001000000000  0 000  000   111 2345679999999


Q ss_pred             CCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        443 DKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       443 dk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      ++|+++..++|+..+|+-             |.. +.|+.|.||.              .+.+++.||+  ..+....++
T Consensus       103 d~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~~--------------~ll~TI~SRc--~~~~~~~~~  153 (313)
T PRK05564        103 EKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENLE--------------QILDTIKSRC--QIYKLNRLS  153 (313)
T ss_pred             hhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCcHHHHhhc--eeeeCCCcC
Confidence            999999999999999861             222 3445555664              5889999999  444455555


Q ss_pred             hHHHHHH
Q psy11213        522 RDNDLKL  528 (621)
Q Consensus       522 ~~~d~~i  528 (621)
                      .+.-...
T Consensus       154 ~~~~~~~  160 (313)
T PRK05564        154 KEEIEKF  160 (313)
T ss_pred             HHHHHHH
Confidence            5544333

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.71  E-value=2.5e-05  Score=81.93  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC-CCCCCCCCcccccCCCH
Q psy11213        426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY-GRYNPKRSIEQNIQLPA  504 (621)
Q Consensus       426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~-g~~~~~~~~~~~~~L~~  504 (621)
                      .|.+..|++|++=+=|+-|.+.+....||.+.+++.+...  |....++.+..|||.+|+.+ .+|.      .+ .-.+
T Consensus       226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~------~~-~~~e  296 (358)
T PF08298_consen  226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFK------NN-KNNE  296 (358)
T ss_pred             ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHh------cc-ccch
Confidence            5899999999998889999999999999999999998873  33445678889999999873 2221      11 2237


Q ss_pred             hHhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        505 ALLSRFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       505 aLlsRFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||.||+. ++-+.-..+-..+.+|.+.++.
T Consensus       297 Af~DRi~-~I~VPY~L~~s~E~kIY~k~~~  325 (358)
T PF08298_consen  297 AFKDRIE-VIKVPYCLRVSEEVKIYEKLIG  325 (358)
T ss_pred             hhhhheE-EEeccccCCHHHHHHHHHHHhh
Confidence            9999992 3333334456677778877764

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=97.71  E-value=0.00012  Score=86.71  Aligned_cols=207  Identities=16%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh--ccccEEec---CCCCc-cc-cceEEEeecCcccceeeeccceeecCCCeeEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL--ARRSQYTT---GRGSS-GV-GLTAAVMKDPITNEMVLEGGALVLADQGICCIDEF  442 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~--~pr~~~~~---g~~~s-~~-gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEi  442 (621)
                      -.++++||||+|||+|.--....  .-..++..   ...+. .. -|--...+-+.+|...+-|...+  ..+|+|.|||
T Consensus      1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDeI 1572 (3164)
T COG5245        1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDEI 1572 (3164)
T ss_pred             ceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeecc
Confidence            37999999999999975432211  11111111   11100 00 00001111122344444343333  3689999999


Q ss_pred             CC------CChhhhhhhHhhhcceEE--EEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        443 DK------LPDADRTAIHEVMEQQTI--SIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       443 dk------~~~~~~~~L~eame~q~i--si~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      +.      .++++...|...||.|-+  ++++..  .+ -++..+.+||||.        +-.+.++.+..+++|=  ++
T Consensus      1573 nLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~w--vT-I~~i~l~Gacnp~--------td~gRv~~~eRf~r~~--v~ 1639 (3164)
T COG5245        1573 NLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSW--VT-ICGIILYGACNPG--------TDEGRVKYYERFIRKP--VF 1639 (3164)
T ss_pred             CCccccccCCCceEEeeHHHHHhcccccchhhhH--hh-hcceEEEccCCCC--------CCcccCccHHHHhcCc--eE
Confidence            84      344455566677776432  121111  11 1357889999997        2334478899999996  67


Q ss_pred             EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-
Q psy11213        515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDM-  593 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~-  593 (621)
                      +..++|.......|.+.++...           .+-.++.+           .++++....-+..|...|...+..-.. 
T Consensus      1640 vf~~ype~~SL~~Iyea~l~~s-----------~l~~~ef~-----------~~se~~~~aSv~ly~~~k~~~k~~lq~~ 1697 (3164)
T COG5245        1640 VFCCYPELASLRNIYEAVLMGS-----------YLCFDEFN-----------RLSEETMSASVELYLSSKDKTKFFLQMN 1697 (3164)
T ss_pred             EEecCcchhhHHHHHHHHHHHH-----------HHhhHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            7778999888888887554311           01112222           345566677788898888876554323 


Q ss_pred             CccCHHHHHHHHHHHHHHHH
Q psy11213        594 SYTSARNLLAILRLSTALAR  613 (621)
Q Consensus       594 ~~~t~R~leslirla~A~Ak  613 (621)
                      ...+||.|..++|.-...|-
T Consensus      1698 y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245        1698 YGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred             cccChHHHHHHHHHHHhHHh
Confidence            44689999888887665543

>KOG0729|consensus

Probab=97.71  E-value=3.4e-05  Score=76.86  Aligned_cols=124  Identities=23%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec-CCCeeEecCCCCC---
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA-DQGICCIDEFDKL---  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA-d~gi~~IDEidk~---  445 (621)
                      .|||+||||||||..+|++|+.......- -.++.   |....+   ..|.. +-+--.+... ..+|+|+||+|.+   
T Consensus       213 gvllygppgtgktl~aravanrtdacfir-vigse---lvqkyv---gegarmvrelf~martkkaciiffdeidaigga  285 (435)
T KOG0729|consen  213 GVLLYGPPGTGKTLCARAVANRTDACFIR-VIGSE---LVQKYV---GEGARMVRELFEMARTKKACIIFFDEIDAIGGA  285 (435)
T ss_pred             ceEEeCCCCCchhHHHHHHhcccCceEEe-ehhHH---HHHHHh---hhhHHHHHHHHHHhcccceEEEEeeccccccCc
Confidence            79999999999999999999874322211 00110   000000   00100 0000001111 2479999999874   


Q ss_pred             --------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEE
Q psy11213        446 --------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWL  515 (621)
Q Consensus       446 --------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~  515 (621)
                              ..+.|..++|.+.|-.      |-.  -....-|+.|+|...             .|.++||+  |.| .-+
T Consensus       286 rfddg~ggdnevqrtmleli~qld------gfd--prgnikvlmatnrpd-------------tldpallrpgrld-rkv  343 (435)
T KOG0729|consen  286 RFDDGAGGDNEVQRTMLELINQLD------GFD--PRGNIKVLMATNRPD-------------TLDPALLRPGRLD-RKV  343 (435)
T ss_pred             cccCCCCCcHHHHHHHHHHHHhcc------CCC--CCCCeEEEeecCCCC-------------CcCHhhcCCcccc-cce
Confidence                    3456788889887632      211  112256788888652             47777775  665 333


Q ss_pred             ecCCCChH
Q psy11213        516 IQDKPDRD  523 (621)
Q Consensus       516 ~~d~~d~~  523 (621)
                      -...||-+
T Consensus       344 ef~lpdle  351 (435)
T KOG0729|consen  344 EFGLPDLE  351 (435)
T ss_pred             eccCCccc
Confidence            33444443

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.69  E-value=0.0001  Score=78.29  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR  509 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR  509 (621)
                      .++..|++|||+++|+.+..++|+..||+-             |..+ .|+.|.|+.              .|.+++.||
T Consensus       108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~~~~~Il~t~~~~--------------~ll~TIrSR  160 (329)
T PRK08058        108 ESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SGGTTAILLTENKH--------------QILPTILSR  160 (329)
T ss_pred             ccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CCCceEEEEeCChH--------------hCcHHHHhh
Confidence            345679999999999999999999999962             2233 344555554              588999999


Q ss_pred             ccEEEEecCCCChHH
Q psy11213        510 FDLLWLIQDKPDRDN  524 (621)
Q Consensus       510 FDli~~~~d~~d~~~  524 (621)
                      +  ..+....++.++
T Consensus       161 c--~~i~~~~~~~~~  173 (329)
T PRK08058        161 C--QVVEFRPLPPES  173 (329)
T ss_pred             c--eeeeCCCCCHHH
Confidence            9  455555555544

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.69  E-value=3.6e-05  Score=82.18  Aligned_cols=68  Identities=26%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      -|++|||++.|+....++|+..||+-             +.+ ..|+.|.+|.              .+.+++.||+  .
T Consensus       143 rVviIDeAd~l~~~aanaLLk~LEEp-------------p~~~~fiLit~~~~--------------~llptIrSRc--~  193 (351)
T PRK09112        143 RIVIIDPADDMNRNAANAILKTLEEP-------------PARALFILISHSSG--------------RLLPTIRSRC--Q  193 (351)
T ss_pred             eEEEEEchhhcCHHHHHHHHHHHhcC-------------CCCceEEEEECChh--------------hccHHHHhhc--c
Confidence            49999999999999999999999862             222 3344555554              4679999999  4


Q ss_pred             EEecCCCChHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQH  531 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~  531 (621)
                      .+....++.+.-..+.++
T Consensus       194 ~i~l~pl~~~~~~~~L~~  211 (351)
T PRK09112        194 PISLKPLDDDELKKALSH  211 (351)
T ss_pred             EEEecCCCHHHHHHHHHH
Confidence            555566776666666554

>PRK06526 transposase; Provisional

Probab=97.63  E-value=6.1e-06  Score=84.15  Aligned_cols=121  Identities=17%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC--hh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--DA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--~~  448 (621)
                      |++|+||||||||.|+.+++..+...-+..... +...+..........|..  ....--+..-.+++|||++...  +.
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~g~~~~~~~  176 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEVGYIPFEPE  176 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHHHHHHHhcCcH--HHHHHHhccCCEEEEcccccCCCCHH
Confidence            899999999999999999987643211110000 000000000000000100  0000012334789999999864  55


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .+..|++.++...-             +.++|.|+|-..+.|....   +.-.+..+++||.
T Consensus       177 ~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w~~~~---~d~~~a~ai~dRl  222 (254)
T PRK06526        177 AANLFFQLVSSRYE-------------RASLIVTSNKPFGRWGEVF---GDDVVAAAMIDRL  222 (254)
T ss_pred             HHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHHHHHc---CChHHHHHHHHHH
Confidence            56678888865321             1257778887654443111   1112445667775

>PRK08181 transposase; Validated

Probab=97.60  E-value=7.8e-06  Score=83.94  Aligned_cols=117  Identities=23%  Similarity=0.327  Sum_probs=63.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      |++|+||||||||.|+.+++..+..    ..|.+.     ..|..........+.  +..-.-.+..-.+++|||+....
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~-----~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~~  180 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT-----TDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYVT  180 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH-----HHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccccc
Confidence            8999999999999999999876432    112111     001110000000010  00000012344699999998765


Q ss_pred             h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .  ..+..|+++++.+.            . +.++|.|+|-..+.|...   .+.-.+..+++||.
T Consensus       181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~~---~~D~~~a~aildRL  230 (269)
T PRK08181        181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWNRV---FPDPAMTLAAVDRL  230 (269)
T ss_pred             CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHHh---cCCccchhhHHHhh
Confidence            4  34567888887542            1 135777888765444321   11223667888886

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.57  E-value=9e-05  Score=70.42  Aligned_cols=51  Identities=27%  Similarity=0.417  Sum_probs=38.3

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ..-|++|||+|+|+.+.+++|+..||+-             |..+ .|+.|.|+.              .|.+++.||+
T Consensus       102 ~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fiL~t~~~~--------------~il~TI~SRc  153 (162)
T PF13177_consen  102 KYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFILITNNPS--------------KILPTIRSRC  153 (162)
T ss_dssp             SSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEEEEES-GG--------------GS-HHHHTTS
T ss_pred             CceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEEEEECChH--------------HChHHHHhhc
Confidence            3469999999999999999999999972             3333 345555665              6999999999

...

>PRK12377 putative replication protein; Provisional

Probab=97.56  E-value=8e-06  Score=82.85  Aligned_cols=114  Identities=15%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecC-cccceeeeccceeecCCCeeEecCCC-
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGGALVLADQGICCIDEFD-  443 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~GalvlAd~gi~~IDEid-  443 (621)
                      .+++|.|+||||||.|+.++++.+...    .|++-     ..+.... +.. ..++ ....-.-.+.+-.+++|||+. 
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~-----~~l~~~l-~~~~~~~~-~~~~~l~~l~~~dLLiIDDlg~  174 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV-----PDVMSRL-HESYDNGQ-SGEKFLQELCKVDLLVLDEIGI  174 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH-----HHHHHHH-HHHHhccc-hHHHHHHHhcCCCEEEEcCCCC
Confidence            389999999999999999999886431    11110     0000000 000 0010 000000012356799999994 


Q ss_pred             -CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        444 -KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       444 -k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                       ..++..+..|+++++.+.            ..+..+|-|+|-....|      .+  .+...++||.
T Consensus       175 ~~~s~~~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l------~~--~~~~ri~dRl  222 (248)
T PRK12377        175 QRETKNEQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAM------ST--LLGERVMDRM  222 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHH------HH--HhhHHHHHHH
Confidence             466777888999988653            22345677788653221      11  2556777776

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.56  E-value=0.00023  Score=74.96  Aligned_cols=70  Identities=17%  Similarity=0.275  Sum_probs=51.7

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      +...|++||+.++|+....++|+..||+-             | + ..|+.|.||.              .|.+++.||+
T Consensus       123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEP-------------p-~~~fILi~~~~~--------------~Ll~TI~SRc  174 (314)
T PRK07399        123 APRKVVVIEDAETMNEAAANALLKTLEEP-------------G-NGTLILIAPSPE--------------SLLPTIVSRC  174 (314)
T ss_pred             CCceEEEEEchhhcCHHHHHHHHHHHhCC-------------C-CCeEEEEECChH--------------hCcHHHHhhc
Confidence            45679999999999999999999999972             1 2 3455555664              6899999999


Q ss_pred             cEEEEecCCCChHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQH  531 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~  531 (621)
                        ..+....++.+.-......
T Consensus       175 --q~i~f~~l~~~~~~~~L~~  193 (314)
T PRK07399        175 --QIIPFYRLSDEQLEQVLKR  193 (314)
T ss_pred             --eEEecCCCCHHHHHHHHHH
Confidence              5555666666655555443

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.52  E-value=0.00029  Score=74.23  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=47.1

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ..|++||+.++|+....++|+..||+-             |.. ..|+.|.||.              .|.++++||+  
T Consensus       108 ~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRC--  158 (325)
T PRK06871        108 NKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA--------------ALLPTIYSRC--  158 (325)
T ss_pred             ceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH--------------hCchHHHhhc--
Confidence            459999999999999999999999973             222 4566777776              6999999999  


Q ss_pred             EEEecCCCChHH
Q psy11213        513 LWLIQDKPDRDN  524 (621)
Q Consensus       513 i~~~~d~~d~~~  524 (621)
                      ..+....++.+.
T Consensus       159 ~~~~~~~~~~~~  170 (325)
T PRK06871        159 QTWLIHPPEEQQ  170 (325)
T ss_pred             eEEeCCCCCHHH
Confidence            444455555443

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.51  E-value=0.00024  Score=75.44  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ...|++||+.++|+....++|+..||+-             |.+ ..|+.|.||.              .|.+++.||+ 
T Consensus       108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTIrSRC-  159 (334)
T PRK07993        108 GAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA--------------RLLATLRSRC-  159 (334)
T ss_pred             CceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhcc-
Confidence            4569999999999999999999999972             222 4567777776              6999999999 


Q ss_pred             EEEEecCCCChHH
Q psy11213        512 LLWLIQDKPDRDN  524 (621)
Q Consensus       512 li~~~~d~~d~~~  524 (621)
                       ..+....++.+.
T Consensus       160 -q~~~~~~~~~~~  171 (334)
T PRK07993        160 -RLHYLAPPPEQY  171 (334)
T ss_pred             -ccccCCCCCHHH
Confidence             344555555444

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.50  E-value=0.00088  Score=66.34  Aligned_cols=144  Identities=23%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Chhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~~~  449 (621)
                      ||||.|-.|||||+|.|++.....      +.+..   |. -+.++....--.+..-.-....+=|+|+|++.-= .++.
T Consensus        87 nVLLwGaRGtGKSSLVKA~~~e~~------~~glr---LV-EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~  156 (287)
T COG2607          87 NVLLWGARGTGKSSLVKALLNEYA------DEGLR---LV-EVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDA  156 (287)
T ss_pred             ceEEecCCCCChHHHHHHHHHHHH------hcCCe---EE-EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchH
Confidence            999999999999999999876631      11110   11 1111110000000000001223568999998543 3334


Q ss_pred             hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC---CCCCCCCCcc------cccCCCHhHhccccEEEEecCCC
Q psy11213        450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY---GRYNPKRSIE------QNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~---g~~~~~~~~~------~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      -.+|-.+||         |....-|+++.+.||+|...   ..+..+....      +.++=.-+|-+||. ..+...++
T Consensus       157 yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFG-LwL~F~~~  226 (287)
T COG2607         157 YKALKSALE---------GGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFG-LWLSFYPC  226 (287)
T ss_pred             HHHHHHHhc---------CCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcc-eeecccCC
Confidence            456666775         44455688999999999751   1121111111      11111125678996 56666777


Q ss_pred             ChHHHHHHHHHHHh
Q psy11213        521 DRDNDLKLAQHITY  534 (621)
Q Consensus       521 d~~~d~~ia~~il~  534 (621)
                      +.++-.+|..|...
T Consensus       227 ~Q~~YL~~V~~~a~  240 (287)
T COG2607         227 DQDEYLKIVDHYAK  240 (287)
T ss_pred             CHHHHHHHHHHHHH
Confidence            87777788777764

>KOG1942|consensus

Probab=97.50  E-value=0.00089  Score=67.84  Aligned_cols=129  Identities=21%  Similarity=0.219  Sum_probs=82.5

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      .||+||||++.++-+--+.||.++|+.-              .-.||-|+|..-.--........-..+|+.||||. +|
T Consensus       297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I  361 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI  361 (456)
T ss_pred             CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence            5899999999999999999999999732              12456666653111111122334457999999998 44


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVKAYTELRKVARNSRD  592 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~~y~~lR~~~~~~~~  592 (621)
                      .-...+                              +.+.+|++|..-.+ .+..+++++.+.+.+.             
T Consensus       362 irt~~y------------------------------~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~-------------  398 (456)
T KOG1942|consen  362 IRTLPY------------------------------DEEEIRQIIKIRAQVEGLQVEEEALDLLAEI-------------  398 (456)
T ss_pred             EeeccC------------------------------CHHHHHHHHHHHHhhhcceecHHHHHHHHhh-------------
Confidence            444333                              33334444432222 2567788888877653             


Q ss_pred             CCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        593 MSYTSARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       593 ~~~~t~R~leslirla~A~Akl~lr~~V  620 (621)
                      ....|.|....|+-=+--.|++++++.|
T Consensus       399 gt~tsLRy~vqLl~p~~~~ak~~g~~~i  426 (456)
T KOG1942|consen  399 GTSTSLRYAVQLLTPASILAKTNGRKEI  426 (456)
T ss_pred             ccchhHHHHHHhcCHHHHHHHHcCCcee
Confidence            2235677777777777778888888654

>KOG0990|consensus

Probab=97.49  E-value=0.00011  Score=75.27  Aligned_cols=135  Identities=18%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeecc-ceee--cCCCeeEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGG-ALVL--ADQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~G-alvl--Ad~gi~~IDE  441 (621)
                      -|.|++||||||||....+.+..+...-   +.++--..|.++..++..     ...+...-+ .+..  +-=..+++||
T Consensus        63 Ph~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE  139 (360)
T KOG0990|consen   63 PHLLFYGPPGTGKTSTILANARDFYSPH---PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE  139 (360)
T ss_pred             CcccccCCCCCCCCCchhhhhhhhcCCC---CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence            3999999999999999998888865531   111001112222111110     000100000 0000  1124789999


Q ss_pred             CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      .|.|..+.|++|..+.|+-+             +++.+.--+|+..             .+.+++.|||  ..+-..+.+
T Consensus       140 ADaMT~~AQnALRRviek~t-------------~n~rF~ii~n~~~-------------ki~pa~qsRc--trfrf~pl~  191 (360)
T KOG0990|consen  140 ADAMTRDAQNALRRVIEKYT-------------ANTRFATISNPPQ-------------KIHPAQQSRC--TRFRFAPLT  191 (360)
T ss_pred             hhHhhHHHHHHHHHHHHHhc-------------cceEEEEeccChh-------------hcCchhhccc--ccCCCCCCC
Confidence            99999999999998666533             2333334457762             5789999999  444445556


Q ss_pred             hHHHHHHHHHHHhh
Q psy11213        522 RDNDLKLAQHITYV  535 (621)
Q Consensus       522 ~~~d~~ia~~il~~  535 (621)
                      ...+.....|+...
T Consensus       192 ~~~~~~r~shi~e~  205 (360)
T KOG0990|consen  192 MAQQTERQSHIRES  205 (360)
T ss_pred             hhhhhhHHHHHHhc
Confidence            66666777777653

>KOG0732|consensus

Probab=97.46  E-value=0.0003  Score=82.68  Aligned_cols=151  Identities=22%  Similarity=0.316  Sum_probs=86.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcccceeeecc----ce-eec---CCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPITNEMVLEGG----AL-VLA---DQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~g~~~l~~G----al-vlA---d~gi~~  438 (621)
                      .||+.|+||||||..+++++...++..    |-..++.-            --+.|+.++-    .| --|   .-.|+|
T Consensus       301 gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD------------~lskwvgEaERqlrllFeeA~k~qPSIIf  368 (1080)
T KOG0732|consen  301 GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD------------CLSKWVGEAERQLRLLFEEAQKTQPSIIF  368 (1080)
T ss_pred             ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch------------hhccccCcHHHHHHHHHHHHhccCceEEe
Confidence            599999999999999999998866532    11111110            0123433221    00 011   247999


Q ss_pred             ecCCCCCCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        439 IDEFDKLPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       439 IDEidk~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      .||||-+.+           .+.+.|+..|.         |...  ..++.||+|+|...             .+.+||.
T Consensus       369 fdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Glds--RgqVvvigATnRpd-------------a~dpaLR  424 (1080)
T KOG0732|consen  369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLDS--RGQVVVIGATNRPD-------------AIDPALR  424 (1080)
T ss_pred             ccccccccccccchHHHhhhhHHHHHHHhcc---------CCCC--CCceEEEcccCCcc-------------ccchhhc
Confidence            999995433           23345555553         2111  12478999999773             4788885


Q ss_pred             c--cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCC----------CCCCCCHHHHHHHHHHHH
Q psy11213        508 S--RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPT----------ELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       508 s--RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~----------~~~~i~~~~lr~~i~~ar  562 (621)
                      +  ||| .-+....|+.+...+|.    ..|...+.++.          ....+-..+||.++..|.
T Consensus       425 RPgrfd-ref~f~lp~~~ar~~Il----~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa  486 (1080)
T KOG0732|consen  425 RPGRFD-REFYFPLPDVDARAKIL----DIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA  486 (1080)
T ss_pred             CCcccc-eeEeeeCCchHHHHHHH----HHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence            4  898 44455667766655544    44544443321          123345556888877663

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.43  E-value=0.0004  Score=73.13  Aligned_cols=62  Identities=26%  Similarity=0.327  Sum_probs=45.9

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      .-|++||+.|+|+....++|+..||+-             |.++ .|+.|.||.              .|.+++.||+  
T Consensus       114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~--------------~lLpTIrSRC--  164 (319)
T PRK08769        114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA--------------RLPATIRSRC--  164 (319)
T ss_pred             cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh--------------hCchHHHhhh--
Confidence            359999999999999999999999972             3344 455555565              5899999999  


Q ss_pred             EEEecCCCChHH
Q psy11213        513 LWLIQDKPDRDN  524 (621)
Q Consensus       513 i~~~~d~~d~~~  524 (621)
                      ..+....|+.++
T Consensus       165 q~i~~~~~~~~~  176 (319)
T PRK08769        165 QRLEFKLPPAHE  176 (319)
T ss_pred             eEeeCCCcCHHH
Confidence            444445555543

>KOG2035|consensus

Probab=97.37  E-value=0.00046  Score=69.56  Aligned_cols=72  Identities=17%  Similarity=0.304  Sum_probs=59.5

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      .++.|.|.|++..+.|.+|...||.=             ...|.+|-.+|...             .+-+|+.||+  ++
T Consensus       129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S-------------riIepIrSRC--l~  180 (351)
T KOG2035|consen  129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS-------------RIIEPIRSRC--LF  180 (351)
T ss_pred             EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc-------------cchhHHhhhe--eE
Confidence            58999999999999999999999852             23478888889773             6889999999  77


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +-..-|+.++-..+...++.
T Consensus       181 iRvpaps~eeI~~vl~~v~~  200 (351)
T KOG2035|consen  181 IRVPAPSDEEITSVLSKVLK  200 (351)
T ss_pred             EeCCCCCHHHHHHHHHHHHH
Confidence            77788888877777777765

>PRK08116 hypothetical protein; Validated

Probab=97.36  E-value=3.9e-05  Score=78.97  Aligned_cols=98  Identities=13%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecC--cccceeeeccce-eecCCCeeEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDP--ITNEMVLEGGAL-VLADQGICCIDEF  442 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~--~~g~~~l~~Gal-vlAd~gi~~IDEi  442 (621)
                      ..++|+|+||||||.|+.++++.+-.    .+|.+..     .+.... +..  ..+... +...+ .+.+..+++|||+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~-----~ll~~i-~~~~~~~~~~~-~~~~~~~l~~~dlLviDDl  187 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP-----QLLNRI-KSTYKSSGKED-ENEIIRSLVNADLLILDDL  187 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-----HHHHHH-HHHHhcccccc-HHHHHHHhcCCCEEEEecc
Confidence            46999999999999999999887532    1222110     010000 000  000000 00001 1335579999999


Q ss_pred             --CCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        443 --DKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       443 --dk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                        ++..+..+..|+++++.+.            .....+|.|+|-.
T Consensus       188 g~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~  221 (268)
T PRK08116        188 GAERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLS  221 (268)
T ss_pred             cCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence              5577777888988887642            1223578888864

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=97.36  E-value=0.00061  Score=72.37  Aligned_cols=62  Identities=19%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      .-|++||+.|+|+....++|+..||+-             |.. +.|+.|.||.              .|.++++||+  
T Consensus       133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRc--  183 (342)
T PRK06964        133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRC--  183 (342)
T ss_pred             ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcC--
Confidence            359999999999999999999999962             223 3566677776              6999999999  


Q ss_pred             EEEecCCCChHH
Q psy11213        513 LWLIQDKPDRDN  524 (621)
Q Consensus       513 i~~~~d~~d~~~  524 (621)
                      ..+.+..++.+.
T Consensus       184 q~i~~~~~~~~~  195 (342)
T PRK06964        184 RQFPMTVPAPEA  195 (342)
T ss_pred             EEEEecCCCHHH
Confidence            344444555443

>TIGR02653 Lon_rel_chp conserved hypothetical protein

Probab=97.35  E-value=0.00098  Score=75.04  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=67.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC---
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP---  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~---  446 (621)
                      .|++=.||.|||||.+-+   +++|.+...+|...|.+.|+.    +..+|.    .|.+-+  --++++||+..+.   
T Consensus       217 ~Nl~ELgPrgTGKS~~y~---eiSp~~~liSGG~~T~A~LFy----n~~~~~----~GlVg~--~D~VaFDEva~i~f~d  283 (675)
T TIGR02653       217 YNLCELGPRGTGKSHVYK---ECSPNSILMSGGQTTVANLFY----NMSTRQ----IGLVGM--WDVVAFDEVAGIEFKD  283 (675)
T ss_pred             cceEEECCCCCCcceeee---ccCCceEEEECCccchhHeeE----EcCCCc----eeEEee--ccEEEEeeccccccCC
Confidence            599999999999999977   677888999987777666664    333443    343332  4689999997743   


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecC
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAAN  484 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~N  484 (621)
                      ++..+.|-..|+.+.++..+    .+..+.++++--.|
T Consensus       284 ~d~v~imK~YM~sG~FsRG~----~~~~a~as~vfvGN  317 (675)
T TIGR02653       284 KDGVQIMKDYMASGSFARGK----ESIEGKASIVFVGN  317 (675)
T ss_pred             HHHHHHHHHHhhcCcccccc----cccccceeEEEEcc
Confidence            33445666779999988743    23445556555444

This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.33  E-value=0.00046  Score=74.12  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=47.3

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      -|++|||++.|+....++|+..+|+-             +.++ .|+.|.||.              .+.+++.||+  .
T Consensus       143 kVviIDead~m~~~aanaLLK~LEep-------------p~~~~~IL~t~~~~--------------~llpti~SRc--~  193 (365)
T PRK07471        143 RVVIVDTADEMNANAANALLKVLEEP-------------PARSLFLLVSHAPA--------------RLLPTIRSRC--R  193 (365)
T ss_pred             EEEEEechHhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCch--------------hchHHhhccc--e
Confidence            49999999999999999999999862             2223 445555554              4678999999  4


Q ss_pred             EEecCCCChHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~  530 (621)
                      .+.+..++.+.-...+.
T Consensus       194 ~i~l~~l~~~~i~~~L~  210 (365)
T PRK07471        194 KLRLRPLAPEDVIDALA  210 (365)
T ss_pred             EEECCCCCHHHHHHHHH
Confidence            44555665555544444

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.30  E-value=0.00033  Score=74.09  Aligned_cols=65  Identities=12%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      +...|++||+++.|++..+++|+..||+..     .       ..+.|+.|.|+.              .+++++.||+ 
T Consensus       112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----~-------~~~~Ilvth~~~--------------~ll~ti~SRc-  164 (325)
T PRK08699        112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-----P-------QVVFLLVSHAAD--------------KVLPTIKSRC-  164 (325)
T ss_pred             CCceEEEEechhhCCHHHHHHHHHHHHhCc-----C-------CCEEEEEeCChH--------------hChHHHHHHh-
Confidence            345699999999999999999999999741     1       123566666665              5889999999 


Q ss_pred             EEEEecCCCChHH
Q psy11213        512 LLWLIQDKPDRDN  524 (621)
Q Consensus       512 li~~~~d~~d~~~  524 (621)
                       ..+....++.+.
T Consensus       165 -~~~~~~~~~~~~  176 (325)
T PRK08699        165 -RKMVLPAPSHEE  176 (325)
T ss_pred             -hhhcCCCCCHHH
Confidence             333344454443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.0017  Score=60.68  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=22.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +.+.+.|+||+|||+++..++..+..
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            47899999999999999999976543

>PRK09183 transposase/IS protein; Provisional

Probab=97.24  E-value=2.5e-05  Score=79.97  Aligned_cols=117  Identities=23%  Similarity=0.400  Sum_probs=61.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceEEEeecCcccce--eeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTAAVMKDPITNEM--VLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta~~~~~~~~g~~--~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |++|+||||+|||+|+.+++..+...   + |.+..     .+..........+.+  .+.. .  .....+++|||+..
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~-----~l~~~l~~a~~~~~~~~~~~~-~--~~~~dlLiiDdlg~  175 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA-----DLLLQLSTAQRQGRYKTTLQR-G--VMAPRLLIIDEIGY  175 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH-----HHHHHHHHHHHCCcHHHHHHH-H--hcCCCEEEEccccc
Confidence            89999999999999999997664321   1 11100     010000000000110  0100 0  12346999999987


Q ss_pred             CC--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        445 LP--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       445 ~~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ..  ......|+++++...            . +.++|.|+|...+.|...  +.+.-.+..+++||.
T Consensus       176 ~~~~~~~~~~lf~li~~r~------------~-~~s~iiTsn~~~~~w~~~--~~~d~~~~~ai~dRl  228 (259)
T PRK09183        176 LPFSQEEANLFFQVIAKRY------------E-KGSMILTSNLPFGQWDQT--FAGDAALTSAMLDRL  228 (259)
T ss_pred             CCCChHHHHHHHHHHHHHH------------h-cCcEEEecCCCHHHHHHH--hcCchhHHHHHHHHH
Confidence            43  344456888876532            0 124677888775544321  101223556777775

>KOG0736|consensus

Probab=97.23  E-value=0.00098  Score=75.39  Aligned_cols=144  Identities=16%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-------ccceeeeccceeecCCCeeEec
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-------TNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-------~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      ...-+||-|+||+|||++.+++|+.+..-++...-.+    +++.......       .......+-.+.+++-.++-||
T Consensus       430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~e----l~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id  505 (953)
T KOG0736|consen  430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYE----LVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID  505 (953)
T ss_pred             cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHH----HhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec
Confidence            4568999999999999999999999888776543211    1111110000       0111234556666666777777


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      -..-..-.....|+..|+.   ...     ..-..+..++||++...             ++|+.+.+-| +.-+..+.+
T Consensus       506 ~dgged~rl~~~i~~~ls~---e~~-----~~~~~~~ivv~t~~s~~-------------~lp~~i~~~f-~~ei~~~~l  563 (953)
T KOG0736|consen  506 QDGGEDARLLKVIRHLLSN---EDF-----KFSCPPVIVVATTSSIE-------------DLPADIQSLF-LHEIEVPAL  563 (953)
T ss_pred             CCCchhHHHHHHHHHHHhc---ccc-----cCCCCceEEEEeccccc-------------cCCHHHHHhh-hhhccCCCC
Confidence            6663333334555555541   111     11123478899998874             6999999988 677888999


Q ss_pred             ChHHHHHHHHHHHhhhc
Q psy11213        521 DRDNDLKLAQHITYVHK  537 (621)
Q Consensus       521 d~~~d~~ia~~il~~~~  537 (621)
                      ++++..++.+.+++.+.
T Consensus       564 se~qRl~iLq~y~~~~~  580 (953)
T KOG0736|consen  564 SEEQRLEILQWYLNHLP  580 (953)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998876553

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.22  E-value=0.00066  Score=64.91  Aligned_cols=90  Identities=26%  Similarity=0.414  Sum_probs=47.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCC--CCcccc------------ceEEEe--ecCcccceeee---
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGR--GSSGVG------------LTAAVM--KDPITNEMVLE---  425 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~--~~s~~g------------Lta~~~--~~~~~g~~~l~---  425 (621)
                      |++|.|+||+|||++++.+.+.+.      .+++|...  +....|            ..+...  ..+..|.|...   
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~   80 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES   80 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence            799999999999999999888762      23444221  111111            111111  00112443321   


Q ss_pred             ---cc--ceee--cCCCeeEecCCCCC---ChhhhhhhHhhhcce
Q psy11213        426 ---GG--ALVL--ADQGICCIDEFDKL---PDADRTAIHEVMEQQ  460 (621)
Q Consensus       426 ---~G--alvl--Ad~gi~~IDEidk~---~~~~~~~L~eame~q  460 (621)
                         .|  +|-.  .+..+++||||.+|   .+.-+.++.++|+..
T Consensus        81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~  125 (168)
T PF03266_consen   81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSN  125 (168)
T ss_dssp             HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCC
Confidence               11  2222  36679999999886   455677888888743

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.19  E-value=0.0023  Score=69.01  Aligned_cols=176  Identities=18%  Similarity=0.235  Sum_probs=91.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      +++|+|+.|.|||.|++++...+-      +.+|.+.......-..  ..++....+|.    ...  +-.++|||+++.
T Consensus       115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~--a~~~~~~~~Fk----~~y--~~dlllIDDiq~  186 (408)
T COG0593         115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK--ALRDNEMEKFK----EKY--SLDLLLIDDIQF  186 (408)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH--HHHhhhHHHHH----Hhh--ccCeeeechHhH
Confidence            899999999999999999987632      1122211110000000  00000000000    000  246899999988


Q ss_pred             CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE-EEecCCCC
Q psy11213        445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL-WLIQDKPD  521 (621)
Q Consensus       445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli-~~~~d~~d  521 (621)
                      +..+.  +..+....+.=.           -+.+ .|+.|+....         .+-..+.+.|.|||.-- .+-...||
T Consensus       187 l~gk~~~qeefFh~FN~l~-----------~~~k-qIvltsdr~P---------~~l~~~~~rL~SR~~~Gl~~~I~~Pd  245 (408)
T COG0593         187 LAGKERTQEEFFHTFNALL-----------ENGK-QIVLTSDRPP---------KELNGLEDRLRSRLEWGLVVEIEPPD  245 (408)
T ss_pred             hcCChhHHHHHHHHHHHHH-----------hcCC-EEEEEcCCCc---------hhhccccHHHHHHHhceeEEeeCCCC
Confidence            65543  443333332100           0011 3444443221         11124678999999733 22234455


Q ss_pred             hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213        522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL  601 (621)
Q Consensus       522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l  601 (621)
                      .+....+...                            .|...+..+++++.++|+....              -++|.|
T Consensus       246 ~e~r~aiL~k----------------------------ka~~~~~~i~~ev~~~la~~~~--------------~nvReL  283 (408)
T COG0593         246 DETRLAILRK----------------------------KAEDRGIEIPDEVLEFLAKRLD--------------RNVREL  283 (408)
T ss_pred             HHHHHHHHHH----------------------------HHHhcCCCCCHHHHHHHHHHhh--------------ccHHHH
Confidence            4444444332                            1223367888999888876421              257888


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy11213        602 LAILRLSTALARLRLC  617 (621)
Q Consensus       602 eslirla~A~Akl~lr  617 (621)
                      +.++.-.-+.|....+
T Consensus       284 egaL~~l~~~a~~~~~  299 (408)
T COG0593         284 EGALNRLDAFALFTKR  299 (408)
T ss_pred             HHHHHHHHHHHHhcCc
Confidence            8777666666666655

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.19  E-value=0.0008  Score=70.79  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=72.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE---EecCCC--------CccccceEEEeecCc-ccc-ee------eec---cc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRG--------SSGVGLTAAVMKDPI-TNE-MV------LEG---GA  428 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~--------~s~~gLta~~~~~~~-~g~-~~------l~~---Ga  428 (621)
                      -+||.||.|+||+.+++.+++.+--..   -.+|.=        .+..++.  . ..+. .|. ..      +..   ..
T Consensus        27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~--~-i~p~~~~~~I~vdqiR~l~~~~~~~  103 (319)
T PRK06090         27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH--V-IKPEKEGKSITVEQIRQCNRLAQES  103 (319)
T ss_pred             eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE--E-EecCcCCCcCCHHHHHHHHHHHhhC
Confidence            589999999999999999988742111   011110        0000011  0 0110 010 00      000   00


Q ss_pred             eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      -..+..-|++||+.++|+....++|+..+|+-             |.+ ..|+.|.||.              .|.+++.
T Consensus       104 ~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~  156 (319)
T PRK06090        104 SQLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIV  156 (319)
T ss_pred             cccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHH
Confidence            11223459999999999999999999999972             222 3556667776              6899999


Q ss_pred             ccccEEEEecCCCChHH
Q psy11213        508 SRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~  524 (621)
                      ||+  ..+....|+.+.
T Consensus       157 SRC--q~~~~~~~~~~~  171 (319)
T PRK06090        157 SRC--QQWVVTPPSTAQ  171 (319)
T ss_pred             hcc--eeEeCCCCCHHH
Confidence            999  444555555543

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.00056  Score=67.25  Aligned_cols=28  Identities=39%  Similarity=0.595  Sum_probs=25.3

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |+.|.|++||||+|||+++|-+|+.+..
T Consensus       136 g~lntLiigpP~~GKTTlLRdiaR~~s~  163 (308)
T COG3854         136 GWLNTLIIGPPQVGKTTLLRDIARLLSD  163 (308)
T ss_pred             CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence            6889999999999999999999998543

>PRK06921 hypothetical protein; Provisional

Probab=97.12  E-value=8.2e-05  Score=76.49  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++|+|+||+|||.|+.++++.+.
T Consensus       119 ~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        119 SIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999998754

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.11  E-value=0.0018  Score=73.96  Aligned_cols=153  Identities=11%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEe--cCC----CCcc--------ccceEEEeecCcccceeeeccc----e---e
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYT--TGR----GSSG--------VGLTAAVMKDPITNEMVLEGGA----L---V  430 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~----~~s~--------~gLta~~~~~~~~g~~~l~~Ga----l---v  430 (621)
                      ++|.||||+|||++++.+++.+...+..  ...    ..+.        ..+.........-.++...+..    +   .
T Consensus       113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~  192 (637)
T TIGR00602       113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDL  192 (637)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccccccc
Confidence            8999999999999999999886543211  000    0000        0000000000000111111110    0   0


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhc-ceEEEEecCCeEEecCCcceEEeecC--CCCCCCCCCCCcccccCCCHhHh
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVME-QQTISIAKAGIMTRLNARVSILAAAN--PAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame-~q~isi~k~gi~~~l~ar~~viAa~N--p~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      ..+.-|++||||+.+......+++++|. .   .+ +       ..++.+|+++|  |..+.......+...--|.++++
T Consensus       193 ~~~~~IILIDEiPn~~~r~~~~lq~lLr~~---~~-e-------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLl  261 (637)
T TIGR00602       193 MTDKKIILVEDLPNQFYRDTRALHEILRWK---YV-S-------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEIL  261 (637)
T ss_pred             CCceeEEEeecchhhchhhHHHHHHHHHHH---hh-c-------CCCceEEEEecCCccccccccccccchhcccCHhHh
Confidence            1234599999997766544445555554 1   00 0       12334444444  43211000111111111558999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      ++.-+..+.+.+.....-.+.++.++..
T Consensus       262 s~~rv~~I~FnPia~t~l~K~L~rIl~~  289 (637)
T TIGR00602       262 EEPRVSNISFNPIAPTIMKKFLNRIVTI  289 (637)
T ss_pred             cccceeEEEeCCCCHHHHHHHHHHHHHh
Confidence            8554456667777777777777777754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.95  E-value=0.00012  Score=77.44  Aligned_cols=97  Identities=16%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEE---eecCcccceeeeccceeecCCCeeEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAV---MKDPITNEMVLEGGALVLADQGICCIDEF  442 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~---~~~~~~g~~~l~~GalvlAd~gi~~IDEi  442 (621)
                      -+++|+|+||||||.|+.++++.+-+    ..|.+..     .+....   ..+. ..+  .+...-.+.+--+++||++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~-----~l~~~l~~~~~~~-~~~--~~~~~~~l~~~DLLIIDDl  255 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD-----ELIEILREIRFNN-DKE--LEEVYDLLINCDLLIIDDL  255 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH-----HHHHHHHHHHhcc-chh--HHHHHHHhccCCEEEEecc
Confidence            48999999999999999999987532    1122110     011000   0000 000  0000011224578999999


Q ss_pred             CC--CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        443 DK--LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       443 dk--~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                      ..  .++..+..|+++++...            ..+..+|.|+|-.
T Consensus       256 G~e~~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~  289 (329)
T PRK06835        256 GTEKITEFSKSELFNLINKRL------------LRQKKMIISTNLS  289 (329)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence            65  45666778888887542            1223567777754

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.91  E-value=0.0013  Score=72.63  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=25.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG  403 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~  403 (621)
                      -+|+.|+||+|||+|+..++....    +..|.++..
T Consensus        82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee  118 (446)
T PRK11823         82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE  118 (446)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            789999999999999998876543    346666543

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=96.84  E-value=0.00088  Score=65.75  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      .-++|+|+-|+|||++++.+...    .|+.......            .++.     ...+...-++.+||++.+...+
T Consensus        53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------------~kd~-----~~~l~~~~iveldEl~~~~k~~  111 (198)
T PF05272_consen   53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------------DKDF-----LEQLQGKWIVELDELDGLSKKD  111 (198)
T ss_pred             eeeeEecCCcccHHHHHHHHhHH----hccCccccCC------------CcHH-----HHHHHHhHheeHHHHhhcchhh
Confidence            46889999999999999988433    3332211100            1111     1112334688999999999888


Q ss_pred             hhhhHhhhcceEEEEec--CCeEEecCCcceEEeecCCC
Q psy11213        450 RTAIHEVMEQQTISIAK--AGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       450 ~~~L~eame~q~isi~k--~gi~~~l~ar~~viAa~Np~  486 (621)
                      .+.|-..+-..+..+-+  +.....+|-+++++||+|..
T Consensus       112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~  150 (198)
T PF05272_consen  112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD  150 (198)
T ss_pred             HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence            88888888887777644  34457788889999999975

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.81  E-value=0.00044  Score=70.10  Aligned_cols=111  Identities=16%  Similarity=0.283  Sum_probs=60.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceEEEe---ecC-cccceeeeccceeecCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTAAVM---KDP-ITNEMVLEGGALVLADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta~~~---~~~-~~g~~~l~~GalvlAd~gi~~IDEi  442 (621)
                      +++|.|+||||||.|+.+++..+...   + |.+     ...+.....   .+. .+.+..++.    +..-.+++|||+
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----~~~l~~~l~~~~~~~~~~~~~~l~~----l~~~dlLvIDDi  171 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----VADIMSAMKDTFSNSETSEEQLLND----LSNVDLLVIDEI  171 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----HHHHHHHHHHHHhhccccHHHHHHH----hccCCEEEEeCC
Confidence            79999999999999999999876331   1 110     000110000   000 000011111    234579999999


Q ss_pred             CCCChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        443 DKLPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       443 dk~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ......+  ...|+++++.+.            ..+..+|-|+|-....+      .+  .+...++||+
T Consensus       172 g~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l------~~--~~g~ri~sRl  221 (244)
T PRK07952        172 GVQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEM------TK--LLGERVMDRM  221 (244)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHH------HH--HhChHHHHHH
Confidence            8865443  446778876542            22346677788652211      11  2456667776

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.81  E-value=0.00016  Score=73.83  Aligned_cols=119  Identities=22%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-EEecCCCCccccceEEEeecC-cccceeeecccee-ecCCCeeEecCCCC--C
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-QYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGGALV-LADQGICCIDEFDK--L  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~Galv-lAd~gi~~IDEidk--~  445 (621)
                      |++|+|+||||||.|+-++++.+-+. ..+.-  .+...+... .+.. ..|.  .+.-..- +..--+++|||+..  +
T Consensus       107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f--~~~~el~~~-Lk~~~~~~~--~~~~l~~~l~~~dlLIiDDlG~~~~  181 (254)
T COG1484         107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLF--ITAPDLLSK-LKAAFDEGR--LEEKLLRELKKVDLLIIDDIGYEPF  181 (254)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EEHHHHHHH-HHHHHhcCc--hHHHHHHHhhcCCEEEEecccCccC
Confidence            99999999999999999998875321 10000  000000000 0000 0000  0000011 23457999999988  4


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ....++.+++++.+...+            +.. +.|+|-..+.|+.-..   ...+.++++||.
T Consensus       182 ~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~~~~~---~~~~~e~~~dRi  230 (254)
T COG1484         182 SQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWDELFG---DDALTEALLDRI  230 (254)
T ss_pred             CHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHHhhcc---CchhHHHHHHHH
Confidence            444578888887765422            223 7788877554432111   111457777774

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.003  Score=67.26  Aligned_cols=34  Identities=41%  Similarity=0.664  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHh-hcc--ccEEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIER-LAR--RSQYTTGRGS  404 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~-~~p--r~~~~~g~~~  404 (621)
                      -+|+=|+||.|||+||-.++. ++.  +..|++|..+
T Consensus        95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES  131 (456)
T COG1066          95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEES  131 (456)
T ss_pred             EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcC
Confidence            678888999999997766544 333  4678888754

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.77  E-value=0.0067  Score=64.21  Aligned_cols=116  Identities=18%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      .||+||||.+.++-+--+.|..|||...-              -.||.|+|..--+ -....+..-..+|..||||+ |+
T Consensus       279 pGVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~-irGt~~~sphGiP~DlLDRl-lI  342 (398)
T PF06068_consen  279 PGVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITK-IRGTDIISPHGIPLDLLDRL-LI  342 (398)
T ss_dssp             E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE--BTTS-EEETT--HHHHTTE-EE
T ss_pred             cceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeee-ccCccCcCCCCCCcchHhhc-EE
Confidence            48999999999999999999999997432              2466677753100 00112344457999999999 55


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL-CKGKNPTVPSSLTEHIVKAYTELRKVARNSRD  592 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~-ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~  592 (621)
                      ... .+                             ++.+++++.+.- |+..+..++++|.++|.+.-.+          
T Consensus       343 I~t-~p-----------------------------y~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~----------  382 (398)
T PF06068_consen  343 IRT-KP-----------------------------YSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVE----------  382 (398)
T ss_dssp             EEE----------------------------------HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHH----------
T ss_pred             EEC-CC-----------------------------CCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhh----------
Confidence            444 32                             333444444432 3444789999999998875332          


Q ss_pred             CCccCHHHHHHHHHHH
Q psy11213        593 MSYTSARNLLAILRLS  608 (621)
Q Consensus       593 ~~~~t~R~leslirla  608 (621)
                         .|.|-...|+-.|
T Consensus       383 ---~SLRYAiqLi~~a  395 (398)
T PF06068_consen  383 ---TSLRYAIQLITPA  395 (398)
T ss_dssp             ---S-HHHHHHCHHHH
T ss_pred             ---ccHHHHHHhhhhh
Confidence               3677666666554

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PHA02774 E1; Provisional

Probab=96.74  E-value=0.0042  Score=69.39  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Chh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PDA  448 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~~  448 (621)
                      -+++|+||||||||.|+-++++.+...+..      .     ...    ...|.++    .+++.-++++||+..- ..-
T Consensus       435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~------f-----vN~----~s~FwLq----pl~d~ki~vlDD~t~~~w~y  495 (613)
T PHA02774        435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVIS------F-----VNS----KSHFWLQ----PLADAKIALLDDATHPCWDY  495 (613)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCEEE------E-----EEC----ccccccc----hhccCCEEEEecCcchHHHH
Confidence            479999999999999999999986421110      0     000    1223333    2557789999999332 122


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                      ....|..+++.+.++|.+....-.--...-+|-|+|..
T Consensus       496 ~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d  533 (613)
T PHA02774        496 IDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID  533 (613)
T ss_pred             HHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence            33467888888888885433221111123467788854

>KOG1969|consensus

Probab=96.61  E-value=0.0013  Score=73.96  Aligned_cols=83  Identities=31%  Similarity=0.362  Sum_probs=49.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee-cC--CCeeEecCCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL-AD--QGICCIDEFDKLP  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl-Ad--~gi~~IDEidk~~  446 (621)
                      --+||+||||.|||+||.-+|+.+.-++.-  .++|.. =|+..+.....+.  +.-. -++ ||  .-.++|||||-..
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGYsVvE--INASDe-Rt~~~v~~kI~~a--vq~~-s~l~adsrP~CLViDEIDGa~  400 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE--INASDE-RTAPMVKEKIENA--VQNH-SVLDADSRPVCLVIDEIDGAP  400 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCceEEE--eccccc-ccHHHHHHHHHHH--Hhhc-cccccCCCcceEEEecccCCc
Confidence            368999999999999999999997655533  222221 1222111111000  0000 112 22  2578899999998


Q ss_pred             hhhhhhhHhhhc
Q psy11213        447 DADRTAIHEVME  458 (621)
Q Consensus       447 ~~~~~~L~eame  458 (621)
                      ......|+..++
T Consensus       401 ~~~Vdvilslv~  412 (877)
T KOG1969|consen  401 RAAVDVILSLVK  412 (877)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777665

>KOG2680|consensus

Probab=96.57  E-value=0.035  Score=56.85  Aligned_cols=102  Identities=24%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      -.|+.||.|-=|+..=..+.+..                          -+|.-++.|-.  -.||+||||.+.++-+--
T Consensus       254 lALFsGdTGEIr~EvRdqin~KV--------------------------~eWreEGKAei--vpGVLFIDEvHMLDIEcF  305 (454)
T KOG2680|consen  254 LALFSGDTGEIRSEVRDQINTKV--------------------------AEWREEGKAEI--VPGVLFIDEVHMLDIECF  305 (454)
T ss_pred             EEEEeCCcccccHHHHHHHHHHH--------------------------HHHHhcCCeee--ccceEEEeeehhhhhHHH
Confidence            56888999988887655543321                          12322222211  159999999999999889


Q ss_pred             hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      +.|..|+|...-.              .++.|+|...-+-. .-++..-..+|-.||+|. ||...
T Consensus       306 sFlNrAlE~d~~P--------------iiimaTNrgit~iR-GTn~~SphGiP~D~lDR~-lII~t  355 (454)
T KOG2680|consen  306 SFLNRALENDMAP--------------IIIMATNRGITRIR-GTNYRSPHGIPIDLLDRM-LIIST  355 (454)
T ss_pred             HHHHHHhhhccCc--------------EEEEEcCCceEEee-cCCCCCCCCCcHHHhhhh-heeec
Confidence            9999999874322              35556665311100 001222246999999998 44444

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=96.57  E-value=0.0054  Score=63.50  Aligned_cols=114  Identities=18%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccE--EecCC--CCccccceEEEeecCccccee------eeccce---eecCCCe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQ--YTTGR--GSSGVGLTAAVMKDPITNEMV------LEGGAL---VLADQGI  436 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~--~~~g~--~~s~~gLta~~~~~~~~g~~~------l~~Gal---vlAd~gi  436 (621)
                      +-.|+.|++|+||..++..+++.+-...  ..+..  ..+..++.- +..+..+....      +..-.-   +.+..-|
T Consensus        20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv   98 (290)
T PRK05917         20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI   98 (290)
T ss_pred             eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence            3578999999999999999988742110  00000  000000100 00000000000      000000   1123469


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ++||+.|+|+.+..++|+..||+-             |.. ..|+.|.||.              .|.++++||+-
T Consensus        99 ~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~--------------~ll~TI~SRcq  147 (290)
T PRK05917         99 YIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ--------------RLPPTIRSRSL  147 (290)
T ss_pred             EEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh--------------hCcHHHHhcce
Confidence            999999999999999999999972             122 4567777776              58999999993

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.55  E-value=0.00036  Score=63.06  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=19.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+++++|+||+|||.+++.+++..
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            389999999999999999998875

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=96.51  E-value=0.021  Score=59.97  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      =++|+|+.|+|||++++.+.++++....+.   .+...+..   .+  ...+.    .-.+...-+++.||++.-.....
T Consensus        78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~~---~~~~~~~~---~~--~~~f~----~a~l~gk~l~~~~E~~~~~~~~~  145 (304)
T TIGR01613        78 LFFLYGNGGNGKSTFQNLLSNLLGDYATTA---VASLKMNE---FQ--EHRFG----LARLEGKRAVIGDEVQKGYRDDE  145 (304)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhChhhccC---Ccchhhhh---cc--CCCch----hhhhcCCEEEEecCCCCCccccH
Confidence            578999999999999999999975432110   00100110   00  11111    11133455788999975433333


Q ss_pred             hhhHhhhcceEEEEecCCe-EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        451 TAIHEVMEQQTISIAKAGI-MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi-~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ..|-.+.....+++.+.+. .......+.++.++|....-          -+-+.++.+|+
T Consensus       146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~----------~~~~~a~~RR~  196 (304)
T TIGR01613       146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRI----------RGFDGGIKRRL  196 (304)
T ss_pred             HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCcc----------CCCChhheeeE
Confidence            4555555556677644332 33445567888888865210          13467899998

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>PHA02624 large T antigen; Provisional

Probab=96.27  E-value=0.0068  Score=68.04  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh-
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD-  447 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~-  447 (621)
                      .--++|+||||||||+|+.++++.+...+.... +++.            .-.|.+.    +++|.-++++|+.....- 
T Consensus       431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN-sPt~------------ks~FwL~----pl~D~~~~l~dD~t~~~~~  493 (647)
T PHA02624        431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN-CPPD------------KLNFELG----CAIDQFMVVFEDVKGQPAD  493 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee-CCcc------------hhHHHhh----hhhhceEEEeeeccccccc
Confidence            347999999999999999999999733222110 0100            1112222    255777888888742111 


Q ss_pred             ----------hhhhhhHhhhcce-EEEEecCC---eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        448 ----------ADRTAIHEVMEQQ-TISIAKAG---IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       448 ----------~~~~~L~eame~q-~isi~k~g---i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                                +...-|..+++.. .|++.+..   .....|.   .|-|+|..              -||..+.-||-.+
T Consensus       494 ~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~Ney--------------~iP~T~~~Rf~~~  556 (647)
T PHA02624        494 NKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMNEY--------------LIPQTVKARFAKV  556 (647)
T ss_pred             cccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeecCc--------------ccchhHHHHHHHh
Confidence                      0124566667766 66664422   2223333   57788875              5999999999544


Q ss_pred             EEe
Q psy11213        514 WLI  516 (621)
Q Consensus       514 ~~~  516 (621)
                      +..
T Consensus       557 ~~F  559 (647)
T PHA02624        557 LDF  559 (647)
T ss_pred             ccc
Confidence            333

>PRK13695 putative NTPase; Provisional

Probab=96.25  E-value=0.011  Score=56.57  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +++|.|+||+|||+|++.++..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999976653

>KOG0735|consensus

Probab=96.19  E-value=0.0022  Score=72.11  Aligned_cols=136  Identities=21%  Similarity=0.275  Sum_probs=75.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCccccceEEEeecCccc---ceeeeccceeecCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSGVGLTAAVMKDPITN---EMVLEGGALVLADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~~gLta~~~~~~~~g---~~~l~~GalvlAd~gi~~IDEi  442 (621)
                      ||||.|++|+|||.|++++++.+....     +.++..     |-+.. .+....   .|..+  ++ .-...|+++|++
T Consensus       433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~-----l~~~~-~e~iQk~l~~vfse--~~-~~~PSiIvLDdl  503 (952)
T KOG0735|consen  433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST-----LDGSS-LEKIQKFLNNVFSE--AL-WYAPSIIVLDDL  503 (952)
T ss_pred             cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh-----ccchh-HHHHHHHHHHHHHH--HH-hhCCcEEEEcch
Confidence            999999999999999999999865322     111111     00000 000000   00000  00 002478899999


Q ss_pred             CCCChh---------hhh-hhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213        443 DKLPDA---------DRT-AIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF  510 (621)
Q Consensus       443 dk~~~~---------~~~-~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF  510 (621)
                      |-+-..         ... .|-..+.| .+     -+..+.+.+..+||+.|...             .|++-|.|  +|
T Consensus       504 d~l~~~s~~e~~q~~~~~~rla~flnq-vi-----~~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~F  564 (952)
T KOG0735|consen  504 DCLASASSNENGQDGVVSERLAAFLNQ-VI-----KIYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLF  564 (952)
T ss_pred             hhhhccCcccCCcchHHHHHHHHHHHH-HH-----HHHHccCcEEEEEEechhhh-------------hcChhhcCccce
Confidence            875431         111 11111211 11     12234466688999988652             34444443  78


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHhh
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      + +.+-...|+..+..+|..+++..
T Consensus       565 q-~~~~L~ap~~~~R~~IL~~~~s~  588 (952)
T KOG0735|consen  565 Q-IVIALPAPAVTRRKEILTTIFSK  588 (952)
T ss_pred             E-EEEecCCcchhHHHHHHHHHHHh
Confidence            6 66777889999999999988754

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.07  E-value=0.0082  Score=64.69  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=24.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG  403 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~  403 (621)
                      =+|+.|+||+|||+|+..++....    +..|.++..
T Consensus        84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            689999999999999988775532    345666543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.02  E-value=0.0044  Score=55.19  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |++.|+||+|||++++.+++.+.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            68999999999999999999853

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.01  E-value=0.048  Score=61.32  Aligned_cols=158  Identities=13%  Similarity=0.122  Sum_probs=82.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec--CCC---C--ccccceEE-Eeec------Ccccceeeec---------c
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRG---S--SGVGLTAA-VMKD------PITNEMVLEG---------G  427 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~---~--s~~gLta~-~~~~------~~~g~~~l~~---------G  427 (621)
                      -+||.||||+|||+.++.+|+.+...+...  ...   +  ...+.... ...+      ..-++|.+.+         |
T Consensus        47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g  126 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG  126 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence            578899999999999999999965544221  111   0  00000000 0000      0112222221         1


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEee-cCCCCCCCCCC-CCcccccCCCHh
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA-ANPAYGRYNPK-RSIEQNIQLPAA  505 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa-~Np~~g~~~~~-~~~~~~~~L~~a  505 (621)
                      .-...++-|++|+|+..+...+...++++|.+=.-+   .+.   +  .+.+|.+ ++-..|.-+.. ..+...--+++.
T Consensus       127 ~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~---~~~---~--PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~  198 (519)
T PF03215_consen  127 SNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRS---SRC---L--PLVFIISETESLSGDNSYRSNSFTAERLFPKE  198 (519)
T ss_pred             CCcCCCceEEEeeccccccchhHHHHHHHHHHHHHc---CCC---C--CEEEEEecccccCCCCcccccchhhhhccCHH
Confidence            111234679999999887666668888888752211   000   0  3444444 12111110000 111111237888


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHhhh
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVH  536 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~  536 (621)
                      ++....+..+-+.+.....-++....|+...
T Consensus       199 il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  199 ILNHPGITRIKFNPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             HHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence            8887766777777777766666666666544

>TIGR00416 sms DNA repair protein RadA

Probab=96.01  E-value=0.0099  Score=65.83  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=24.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc-c---ccEEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA-R---RSQYTTGRG  403 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~-p---r~~~~~g~~  403 (621)
                      -+|+.|+||+|||+|+..++... .   +..|.++..
T Consensus        96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE  132 (454)
T TIGR00416        96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE  132 (454)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence            67899999999999999886643 2   345666543

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=95.97  E-value=0.017  Score=59.87  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ++||+||+|.|||++++...+.-|.
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~   87 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPP   87 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCC
Confidence            8999999999999999999887554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.95  E-value=0.006  Score=55.92  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+++|+||+|||++++.+++.++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68999999999999999998765

...

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=95.92  E-value=0.025  Score=59.12  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE---EecCCCCccccceEEEeecCccccee------eec----cceeecCCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRGSSGVGLTAAVMKDPITNEMV------LEG----GALVLADQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~~s~~gLta~~~~~~~~g~~~------l~~----GalvlAd~gi~  437 (621)
                      -.||+|+.|+||+++++.+++.+-...   ...+..+    .. -...+...+...      +..    .+...++.-|+
T Consensus        20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p----~n-~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kvv   94 (299)
T PRK07132         20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELP----AN-IILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKIL   94 (299)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCC----cc-eEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEE
Confidence            456999999999999999988751100   0000000    00 000111000000      000    01111256799


Q ss_pred             EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      +||+.++|+....++|+..||+-             |..+ .|+.|.||.              .|.+++.||+  ..+-
T Consensus        95 II~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~--------------kll~TI~SRc--~~~~  145 (299)
T PRK07132         95 IIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN--------------KVLPTIVSRC--QVFN  145 (299)
T ss_pred             EEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH--------------hChHHHHhCe--EEEE
Confidence            99999999999999999999962             3333 344555664              5889999999  4555


Q ss_pred             cCCCChHH
Q psy11213        517 QDKPDRDN  524 (621)
Q Consensus       517 ~d~~d~~~  524 (621)
                      ...++.+.
T Consensus       146 f~~l~~~~  153 (299)
T PRK07132        146 VKEPDQQK  153 (299)
T ss_pred             CCCCCHHH
Confidence            55554443

>PRK14532 adenylate kinase; Provisional

Probab=95.92  E-value=0.0074  Score=58.45  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      +|+|+|+||+|||++++.+++......+.+|
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~   32 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG   32 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence            7999999999999999999998765555444

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.86  E-value=0.019  Score=57.38  Aligned_cols=82  Identities=20%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee---cCCCeeEecCCCCCChh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL---ADQGICCIDEFDKLPDA  448 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl---Ad~gi~~IDEidk~~~~  448 (621)
                      +++.|.||+|||++++.+.+..  .+++..... ..-.+...........+.++......   .....++|||+..+++.
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g   77 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISPT-IELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG   77 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc--ccccccccc-ceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence            4678999999999999988873  111111110 00011111111111112222211111   23679999999999976


Q ss_pred             hhhhhHhh
Q psy11213        449 DRTAIHEV  456 (621)
Q Consensus       449 ~~~~L~ea  456 (621)
                      ....|...
T Consensus        78 ~l~~l~~~   85 (234)
T PF01443_consen   78 YLLLLLSL   85 (234)
T ss_pred             HHHHHHhh
Confidence            65554443

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK13947 shikimate kinase; Provisional

Probab=95.83  E-value=0.0085  Score=56.93  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      ||+|+|+||+|||++++.+++.+....+..+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~   34 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK   34 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence            79999999999999999999998776665543

>PF13173 AAA_14: AAA domain

Probab=95.71  E-value=0.0054  Score=55.67  Aligned_cols=79  Identities=28%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc---ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR---RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p---r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      .++|.|+.|+|||++++.+++...   ...|..........+.     +...-++..+.   ......+++|||+.+++.
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~   75 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLPD   75 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence            689999999999999999887643   3334332221111000     00000011110   111467899999999974


Q ss_pred             hhhhhhHhhhc
Q psy11213        448 ADRTAIHEVME  458 (621)
Q Consensus       448 ~~~~~L~eame  458 (621)
                       ....+-...+
T Consensus        76 -~~~~lk~l~d   85 (128)
T PF13173_consen   76 -WEDALKFLVD   85 (128)
T ss_pred             -HHHHHHHHHH
Confidence             4445544444

>PF13654 AAA_32: AAA domain; PDB: 3K1J_B

Probab=95.71  E-value=0.019  Score=64.26  Aligned_cols=183  Identities=16%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             CCCccccceEEEeecCcccce-----eeeccceeecCCCeeEecCCCCCC-hhhhhhhHhhhcceEEEEecCCeEEecCC
Q psy11213        402 RGSSGVGLTAAVMKDPITNEM-----VLEGGALVLADQGICCIDEFDKLP-DADRTAIHEVMEQQTISIAKAGIMTRLNA  475 (621)
Q Consensus       402 ~~~s~~gLta~~~~~~~~g~~-----~l~~GalvlAd~gi~~IDEidk~~-~~~~~~L~eame~q~isi~k~gi~~~l~a  475 (621)
                      ..++...|+|.+......|.+     .++||+|..|+||+++||--+-+. +.....|..++..+++.+.-.+. ..+..
T Consensus       296 ~~Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~-~~~~~  374 (509)
T PF13654_consen  296 DNPTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEE-YGLSS  374 (509)
T ss_dssp             TT--HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S----TTSG
T ss_pred             CCCCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccc-cccCC
Confidence            344555577777666544543     379999999999999999998876 56789999999999999864421 11000


Q ss_pred             cceEEeecCCCCCCCCCCCCcccccCC-CHhHhccccEEEEecCCCChH-----HHHHHHHHHHhhhccCCCCCCCCCCC
Q psy11213        476 RVSILAAANPAYGRYNPKRSIEQNIQL-PAALLSRFDLLWLIQDKPDRD-----NDLKLAQHITYVHKHSRQPPTELKPI  549 (621)
Q Consensus       476 r~~viAa~Np~~g~~~~~~~~~~~~~L-~~aLlsRFDli~~~~d~~d~~-----~d~~ia~~il~~~~~~~~~~~~~~~i  549 (621)
                             +                ..| |+|+  -+|+-++++..+..-     .|....+.. +..    ......-..
T Consensus       375 -------~----------------~~l~PepI--pl~vKVILiG~~~~y~~L~~~D~dF~~lF-kv~----aef~~~~~~  424 (509)
T PF13654_consen  375 -------T----------------VSLEPEPI--PLDVKVILIGDRELYYLLYEYDPDFYKLF-KVK----AEFDSEMPR  424 (509)
T ss_dssp             -------G----------------GG-B-S-E--E---EEEEEE-TTHHHHS-HHHHHHHHHH-SEE----EE--SEEE-
T ss_pred             -------C----------------CCCCCCCc--ceEEEEEEEcCHHHHHHHHHhCHHHHhCC-CEE----EEccccCCC
Confidence                   0                001 1111  123334443333321     111111110 000    000112234


Q ss_pred             CHHHHHHHHHHHH----cC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        550 DMSLVRRYIDLCK----GK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       550 ~~~~lr~~i~~ar----~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +.+-++.|+.+.+    +. -+.++.+|...|.++...+      ..+...+....+..|++-|-+.|+...++.|+
T Consensus       425 ~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~------~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~  495 (509)
T PF13654_consen  425 TEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL------DQDKLSLRFSWLADLLREANYWARKEGAKVIT  495 (509)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC------C-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH------hCCEeCCCHHHHHHHHHHHHHHHHHhCCCccC
Confidence            5666666666654    33 5789999999999886554      12244566779999999999999999888774

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.64  E-value=0.011  Score=54.92  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=24.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+++.+....+.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~   29 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD   29 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            58999999999999999999886554443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.60  E-value=0.01  Score=57.32  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=26.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .|+++|+||+|||++++.+++.++-....+|
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstg   32 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTG   32 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHh
Confidence            6899999999999999999999765555444

>PHA00729 NTP-binding motif containing protein

Probab=95.58  E-value=0.0091  Score=59.54  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -.|+++.|+||||||+|+..+++.+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999999874

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.56  E-value=0.012  Score=55.66  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=25.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .+|+|+|+||+|||++++.+++.+....+
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l~~~~~   33 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFI   33 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            48999999999999999999998755444

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=95.54  E-value=0.006  Score=59.80  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---c-EEecCCCCcc------ccceEEEeecCcccceee--eccceeecCCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---S-QYTTGRGSSG------VGLTAAVMKDPITNEMVL--EGGALVLADQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~-~~~~g~~~s~------~gLta~~~~~~~~g~~~l--~~GalvlAd~gi~~  438 (621)
                      -.++.|+||||||++++.+.+.+..   . +..+..+...      .|..+..+ ...-..+..  ..+........+++
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti-~~~l~~~~~~~~~~~~~~~~~~vli   98 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTI-HSFLYRIPNGDDEGRPELPKKDVLI   98 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEH-HHHTTEECCEECCSSCC-TSTSEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhH-HHHHhcCCcccccccccCCcccEEE
Confidence            4677899999999999998776432   1 2221111100      01111111 000000000  00011134457999


Q ss_pred             ecCCCCCChhhhhhhHhhhcc
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~  459 (621)
                      |||...++......|++....
T Consensus        99 VDEasmv~~~~~~~ll~~~~~  119 (196)
T PF13604_consen   99 VDEASMVDSRQLARLLRLAKK  119 (196)
T ss_dssp             ESSGGG-BHHHHHHHHHHS-T
T ss_pred             EecccccCHHHHHHHHHHHHh
Confidence            999999999888888888765

>PRK00625 shikimate kinase; Provisional

Probab=95.54  E-value=0.012  Score=56.56  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=25.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      ||+|+|.||+|||++++.+++.+....+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~   31 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDT   31 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEh
Confidence            799999999999999999999876555443

>PRK03839 putative kinase; Provisional

Probab=95.53  E-value=0.012  Score=56.58  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      .|+|+|.||+|||++++.+++.+....+..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~   31 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL   31 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            589999999999999999999976554443

>KOG3347|consensus

Probab=95.52  E-value=0.011  Score=54.46  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      -|||+.|-||||||+++.++|..+.-.
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~   34 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLE   34 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCc
Confidence            399999999999999999999885433

>PRK08118 topology modulation protein; Reviewed

Probab=95.52  E-value=0.012  Score=56.23  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|+++|+||+|||+|++.+++.+.-..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~   29 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPV   29 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            589999999999999999999865443

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=95.50  E-value=0.0054  Score=65.77  Aligned_cols=92  Identities=14%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc------cccEEecCCCCccccceEEEeecC---cccceeeeccce---------eec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA------RRSQYTTGRGSSGVGLTAAVMKDP---ITNEMVLEGGAL---------VLA  432 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~------pr~~~~~g~~~s~~gLta~~~~~~---~~g~~~l~~Gal---------vlA  432 (621)
                      -+++.|.||||||.||-.+++.+      ....|.++..+...-+-.......   ..+.....+..+         ...
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   82 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN   82 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence            47889999999999999988876      223344433221110000000000   000111111111         123


Q ss_pred             CCCeeEecCCCCCChh--------hhhhhHhhhcceEE
Q psy11213        433 DQGICCIDEFDKLPDA--------DRTAIHEVMEQQTI  462 (621)
Q Consensus       433 d~gi~~IDEidk~~~~--------~~~~L~eame~q~i  462 (621)
                      +-.++++||..++...        ..+.|.+.|....+
T Consensus        83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv  120 (352)
T PF09848_consen   83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKV  120 (352)
T ss_pred             cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCE
Confidence            4589999999999872        23667777776443

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=95.42  E-value=0.031  Score=56.88  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=40.7

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .-|++||++++|+....++|+..+|+-             |.+ ..++.|.|+.              .+.+++.||+
T Consensus        89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRC  139 (261)
T PRK05818         89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRC  139 (261)
T ss_pred             CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhhe
Confidence            469999999999999999999999972             222 3556666665              6999999998

>PRK14530 adenylate kinase; Provisional

Probab=95.40  E-value=0.015  Score=57.77  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      .+|+|+|+||+|||++++.+++.++-..+.+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~   34 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT   34 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            3799999999999999999999876544433

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.37  E-value=0.016  Score=55.70  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      |+++|+||+|||++++.+++..+-..
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~   27 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTH   27 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence            68999999999999999999865433

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=95.35  E-value=0.0042  Score=66.66  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=22.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .+.|.|++|+|||.|+-.....+|.
T Consensus        64 GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   64 GLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             eEEEECCCCCchhHHHHHHHHhCCc
Confidence            7999999999999999998888764

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK13949 shikimate kinase; Provisional

Probab=95.32  E-value=0.016  Score=55.36  Aligned_cols=29  Identities=28%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+++.+....+.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id   31 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFID   31 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence            69999999999999999999987654443

>PRK04296 thymidine kinase; Provisional

Probab=95.29  E-value=0.073  Score=51.88  Aligned_cols=21  Identities=19%  Similarity=-0.021  Sum_probs=17.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++++|+||+|||+++..++..
T Consensus         5 ~litG~~GsGKTT~~l~~~~~   25 (190)
T PRK04296          5 EFIYGAMNSGKSTELLQRAYN   25 (190)
T ss_pred             EEEECCCCCHHHHHHHHHHHH
Confidence            578999999999877766554

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=95.18  E-value=0.013  Score=63.14  Aligned_cols=89  Identities=25%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc---EEecCC-CCcc----ccceEEEeec-Cc-cccee---ee---ccceeecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS---QYTTGR-GSSG----VGLTAAVMKD-PI-TNEMV---LE---GGALVLAD  433 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~-~~s~----~gLta~~~~~-~~-~g~~~---l~---~GalvlAd  433 (621)
                      .++++.|+.|||||.+++++...+...   +..++. |..+    .|.|...... +. .....   ..   .-.-.+.+
T Consensus        23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~  102 (364)
T PF05970_consen   23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRK  102 (364)
T ss_pred             cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhh
Confidence            489999999999999999998776432   322221 1111    1222211111 00 00000   00   00112234


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame  458 (621)
                      -.+++|||+..++......|...|.
T Consensus       103 ~~~lIiDEism~~~~~l~~i~~~lr  127 (364)
T PF05970_consen  103 ADVLIIDEISMVSADMLDAIDRRLR  127 (364)
T ss_pred             heeeecccccchhHHHHHHHHHhhh
Confidence            4699999999998887777766654

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK07261 topology modulation protein; Provisional

Probab=95.16  E-value=0.021  Score=54.73  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .|+++|+||+|||+|++.+++.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998774

>PF13148 DUF3987: Protein of unknown function (DUF3987)

Probab=95.15  E-value=0.072  Score=57.45  Aligned_cols=161  Identities=22%  Similarity=0.225  Sum_probs=88.6

Q ss_pred             CCeeEecCCCC----CCh----hhhhhhHhhhcceEEEEecCCeE-Ee-cCCcceEEeecCCCC--CCCCCCCCcccccC
Q psy11213        434 QGICCIDEFDK----LPD----ADRTAIHEVMEQQTISIAKAGIM-TR-LNARVSILAAANPAY--GRYNPKRSIEQNIQ  501 (621)
Q Consensus       434 ~gi~~IDEidk----~~~----~~~~~L~eame~q~isi~k~gi~-~~-l~ar~~viAa~Np~~--g~~~~~~~~~~~~~  501 (621)
                      +..++.||+..    +..    .++..++++-+.+.+++.+.+.. .. -+.+++|++++-|.-  ..+-   +.....-
T Consensus       150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~---~~~~~~~  226 (378)
T PF13148_consen  150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL---SAEDPEF  226 (378)
T ss_pred             eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh---hhhcccc
Confidence            34678888754    332    56778888888888888665432 23 357799999999862  1110   0000011


Q ss_pred             CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHH-------HHHHHHHHH---c--C-CCCC
Q psy11213        502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSL-------VRRYIDLCK---G--K-NPTV  568 (621)
Q Consensus       502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~-------lr~~i~~ar---~--~-~p~l  568 (621)
                      ...=|++|| | |.+.+.......                ........+.+.       ++.+.....   .  . ...+
T Consensus       227 ~~~Gll~Rf-L-~~~p~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~l  288 (378)
T PF13148_consen  227 RGDGLLARF-L-FVIPDSRKGRRF----------------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLEL  288 (378)
T ss_pred             cCCChHhhe-e-eeccCccccccc----------------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEec
Confidence            455789999 5 555443221110                000111112222       222333222   0  1 3478


Q ss_pred             CHHHHHHHHHHHHHHHHHhhc-CCC--CCccCHHHHHHHHHHHHHHHHhc
Q psy11213        569 PSSLTEHIVKAYTELRKVARN-SRD--MSYTSARNLLAILRLSTALARLR  615 (621)
Q Consensus       569 s~~a~~~l~~~y~~lR~~~~~-~~~--~~~~t~R~leslirla~A~Akl~  615 (621)
                      +++|.+...++|..++..... .+.  ....-.|.-+.+.|+|--++-++
T Consensus       289 s~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~  338 (378)
T PF13148_consen  289 SDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFE  338 (378)
T ss_pred             CHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999998888877532 211  11233466677777777776666

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.11  E-value=0.021  Score=55.22  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+++|+||+|||++++.+++...-..+.
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~   29 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHIS   29 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            48999999999999999999985444333

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.10  E-value=0.014  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      |+|.|.||+|||++++.+++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999985

...

>PRK14531 adenylate kinase; Provisional

Probab=94.99  E-value=0.023  Score=54.90  Aligned_cols=29  Identities=14%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|+++|+||+|||++++.+++...-..+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is   32 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS   32 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            68999999999999999999886544333

>KOG1514|consensus

Probab=94.89  E-value=0.067  Score=60.61  Aligned_cols=76  Identities=22%  Similarity=0.301  Sum_probs=56.7

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh-----c
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL-----S  508 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl-----s  508 (621)
                      ..|++|||+|.+-...|..|+...+=          .+.-+++..|||-+|..              +||+.+|     |
T Consensus       509 ~~VvLiDElD~Lvtr~QdVlYn~fdW----------pt~~~sKLvvi~IaNTm--------------dlPEr~l~nrvsS  564 (767)
T KOG1514|consen  509 TTVVLIDELDILVTRSQDVLYNIFDW----------PTLKNSKLVVIAIANTM--------------DLPERLLMNRVSS  564 (767)
T ss_pred             CEEEEeccHHHHhcccHHHHHHHhcC----------CcCCCCceEEEEecccc--------------cCHHHHhccchhh
Confidence            46999999999877777777766541          22336778999999976              4666554     6


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |.++..+.+.+.+..+..+|...-+
T Consensus       565 Rlg~tRi~F~pYth~qLq~Ii~~RL  589 (767)
T KOG1514|consen  565 RLGLTRICFQPYTHEQLQEIISARL  589 (767)
T ss_pred             hccceeeecCCCCHHHHHHHHHHhh
Confidence            9999999998888888777766444

>PRK06217 hypothetical protein; Validated

Probab=94.87  E-value=0.028  Score=54.31  Aligned_cols=28  Identities=14%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|.||+|||++++.+++.+....+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~   30 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHL   30 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence            6899999999999999999998754443

>PF13245 AAA_19: Part of AAA domain

Probab=94.86  E-value=0.032  Score=45.91  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=17.1

Q ss_pred             cEEEeCCCCcchh-HHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKS-QLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS-~ll~~ia~~~  393 (621)
                      -+++.|+|||||| ++++.++...
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            3555999999999 5666666664

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.86  E-value=0.025  Score=45.50  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=20.3

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.86  E-value=0.028  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ++|+|+||+|||++++.+++.+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcC
Confidence            68999999999999999998853

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>KOG1970|consensus

Probab=94.84  E-value=0.037  Score=60.97  Aligned_cols=28  Identities=18%  Similarity=0.184  Sum_probs=23.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      --+||.||+|+|||+.++-+++.+.-.+
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~~~  138 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGYQL  138 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence            3688999999999999999999965543

>KOG3595|consensus

Probab=94.83  E-value=0.42  Score=60.30  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=85.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc-cccEEe-cCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA-RRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~  445 (621)
                      ..++++|++|+|||.+........ ++.++. +....+...++..... ....  ...+|...-.  ..=++|+||++.-
T Consensus       128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~-~~~~--k~~~~~~~~~~~~~~~~f~ddinmp  204 (1395)
T KOG3595|consen  128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIE-SKLD--KRRSGNYGPPLGKKLVLFVDDINMP  204 (1395)
T ss_pred             CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHH-HHHH--HhcccCCCCCCCceeEEEEeccCCc
Confidence            389999999999999888765543 333222 0000000001100000 0000  0111221111  1238999999873


Q ss_pred             C------hhhhhhhHhhhcceEE-EEecCCeEEecCCcceEEeecCCC-CCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        446 P------DADRTAIHEVMEQQTI-SIAKAGIMTRLNARVSILAAANPA-YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       446 ~------~~~~~~L~eame~q~i-si~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                      .      ......++..+|.+-. ...+ +.... --++.+++|+||. .||          .++++.+++.|  ..+..
T Consensus       205 ~~~~yg~q~~~~~lrq~~e~~g~~~~~~-~~~~~-i~~i~~~~a~~~~~~gr----------~~i~~r~~r~f--~~~~~  270 (1395)
T KOG3595|consen  205 ALDKYGDQPPIELLRQMLEHGGFYDRKK-SEWVE-IENVQLVGAMNPPGGGR----------NDITERFLRHF--LIVSL  270 (1395)
T ss_pred             hhhhcCCccHHHHHHHHHHhceeecccc-cceeE-EeeeEEEeecCCCCCcc----------CcccHHHHHHe--eeEee
Confidence            2      2234566666775443 3333 33333 2347899999964 444          47999999999  66677


Q ss_pred             CCCChHHHHHHHHHHHhhh
Q psy11213        518 DKPDRDNDLKLAQHITYVH  536 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~~~  536 (621)
                      +.|+.+.-..|-.+++..|
T Consensus       271 ~~~~~~sl~~if~~~~~~~  289 (1395)
T KOG3595|consen  271 NYPSQESLTQIFNTILTGH  289 (1395)
T ss_pred             CCCChhhHHHHHHHHHhcc
Confidence            8899999999999888765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=94.81  E-value=0.031  Score=53.58  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      +|+|+|++|+|||++++.+++.+....+.++
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D   36 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD   36 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence            7999999999999999999998765554443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.80  E-value=0.054  Score=51.24  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+++.||.|+|||+|+|.+|.+.+
T Consensus        31 ~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccC
Confidence            689999999999999999999854

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.78  E-value=0.023  Score=54.63  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -++++|+||+|||++++.+++.+.-
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~   29 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGF   29 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4788999999999999999977543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.77  E-value=0.031  Score=56.17  Aligned_cols=33  Identities=24%  Similarity=0.512  Sum_probs=27.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      ..|+|+|+||+|||++++.+++........+|.
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd   39 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN   39 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence            479999999999999999999987666665554

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.76  E-value=0.019  Score=55.42  Aligned_cols=118  Identities=17%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc-c---EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR-S---QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr-~---~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      -|++|.|+||||||.|+.++++.+-+ +   .|.+-     ..|..........+...  .-.-.+.+-.+++|||+...
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~-----~~L~~~l~~~~~~~~~~--~~~~~l~~~dlLilDDlG~~  120 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA-----SDLLDELKQSRSDGSYE--ELLKRLKRVDLLILDDLGYE  120 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH-----HHHHHHHHCCHCCTTHC--HHHHHHHTSSCEEEETCTSS
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec-----Cceeccccccccccchh--hhcCccccccEeccccccee
Confidence            38999999999999999999876432 1   11110     00111000000011100  00011235579999999764


Q ss_pred             --ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        446 --PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       446 --~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                        ++.....|+++++.+.            .. -+.|-|+|.....|..   ..++-.+..+++||.
T Consensus       121 ~~~~~~~~~l~~ii~~R~------------~~-~~tIiTSN~~~~~l~~---~~~d~~~a~aildRl  171 (178)
T PF01695_consen  121 PLSEWEAELLFEIIDERY------------ER-KPTIITSNLSPSELEE---VLGDRALAEAILDRL  171 (178)
T ss_dssp             ---HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT------------------
T ss_pred             eecccccccchhhhhHhh------------cc-cCeEeeCCCchhhHhh---ccccccccccccccc
Confidence              5556778888887642            11 2455588876322211   111224677888885

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=94.75  E-value=0.028  Score=65.86  Aligned_cols=89  Identities=16%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc-----cEEec-CCCCccccceEEEeecCccc--ceeeecccee------ecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR-----SQYTT-GRGSSGVGLTAAVMKDPITN--EMVLEGGALV------LADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~~~~-g~~~s~~gLta~~~~~~~~g--~~~l~~Galv------lAd~gi  436 (621)
                      .++|.|.||||||++++.+.+.+..     .++.. ..+..+..|..+.-....|-  -....++...      ..+..+
T Consensus       340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l  419 (720)
T TIGR01448       340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL  419 (720)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence            7899999999999999998776542     22221 11111100110000000000  0000111100      124579


Q ss_pred             eEecCCCCCChhhhhhhHhhhcc
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~  459 (621)
                      ++|||..+++......|++++..
T Consensus       420 lIvDEaSMvd~~~~~~Ll~~~~~  442 (720)
T TIGR01448       420 LIVDESSMMDTWLALSLLAALPD  442 (720)
T ss_pred             EEEeccccCCHHHHHHHHHhCCC
Confidence            99999999998888888887654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.66  E-value=0.029  Score=52.91  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ++|+|+||+|||++++.+++.++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999999999999999875

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06762 hypothetical protein; Provisional

Probab=94.65  E-value=0.032  Score=52.76  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -++++|.||+|||++++.+++.++.
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l~~   28 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERLGR   28 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4788999999999999999988743

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=94.61  E-value=0.029  Score=53.44  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=28.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      -||.|+|.+|+|||++.+.+|+.+....+.++.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~   35 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ   35 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence            489999999999999999999998877765543

>PRK10536 hypothetical protein; Provisional

Probab=94.61  E-value=0.074  Score=54.10  Aligned_cols=26  Identities=12%  Similarity=0.233  Sum_probs=21.8

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame  458 (621)
                      ++++++|||...+++.....++..+-
T Consensus       176 ~~~~vIvDEaqn~~~~~~k~~ltR~g  201 (262)
T PRK10536        176 ENAVVILDEAQNVTAAQMKMFLTRLG  201 (262)
T ss_pred             cCCEEEEechhcCCHHHHHHHHhhcC
Confidence            57899999999999988777776654

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.59  E-value=0.035  Score=53.79  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=24.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ..+.|+|++|+|||+|++.++...+..++.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~   32 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV   32 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence            378999999999999999999886544433

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=94.57  E-value=0.02  Score=67.29  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---EE-ecCCCCc------cccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---QY-TTGRGSS------GVGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~-~~g~~~s------~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      -++|.|+||||||++++.+...+...   +. ..-.+..      ..|..+..+..   -...+..|.-.+.+..+++||
T Consensus       370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~---~~~~~~~~~~~~~~~~llIvD  446 (744)
T TIGR02768       370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLAS---LEYAWANGRDLLSDKDVLVID  446 (744)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHH---HHhhhccCcccCCCCcEEEEE
Confidence            57899999999999999987764321   11 1111100      11111110000   000112233334467899999


Q ss_pred             CCCCCChhhhhhhHhhhc
Q psy11213        441 EFDKLPDADRTAIHEVME  458 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame  458 (621)
                      |+.+++......|+....
T Consensus       447 EasMv~~~~~~~Ll~~~~  464 (744)
T TIGR02768       447 EAGMVGSRQMARVLKEAE  464 (744)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999888777777543

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.57  E-value=0.044  Score=55.80  Aligned_cols=41  Identities=20%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |.+..+.++-..+..+.         -+.|+||.|+|||+|+|.++.+++
T Consensus        13 ~~~~il~~ls~~i~~G~---------i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          13 GGKPILDDLSFSIPKGE---------ITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             CCeeEEecceEEecCCc---------EEEEECCCCCCHHHHHHHHhccCC
Confidence            34555666654444444         788899999999999999999865

>PRK14526 adenylate kinase; Provisional

Probab=94.57  E-value=0.034  Score=55.20  Aligned_cols=32  Identities=19%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      +++|+|+||+|||++++.+++...-..+.+|.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~   33 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGD   33 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecCh
Confidence            68999999999999999999876544444443

>TIGR01351 adk adenylate kinases

Probab=94.56  E-value=0.033  Score=55.09  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      .|+++|+||+|||++++.+++......+.+
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~   30 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHIST   30 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence            378999999999999999998765544443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14528 adenylate kinase; Provisional

Probab=94.52  E-value=0.036  Score=53.83  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ++++.|+||+|||++++.+++...-..+.
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is   31 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQIS   31 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            68999999999999999999876544443

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.50  E-value=0.031  Score=53.57  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=23.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      .|+|.|+||+|||++++.+++.++..
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~~~   29 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLAEP   29 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            58999999999999999999987654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.45  E-value=0.032  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .|+++|++|+|||+|++.++...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998774

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.16  Score=54.03  Aligned_cols=102  Identities=15%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC-
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP-  446 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~-  446 (621)
                      |+.|++=.||.+||||.+-|-   .+|.....+|...+-+.|+....        +-++|.+-+  -.++.+||.-++. 
T Consensus       224 nNyN~cElGPr~TGKshvYke---vSpn~~liSGGqttvAnLFYNma--------trqiGlvg~--wDvVaFDEVagirF  290 (683)
T COG4930         224 NNYNMCELGPRQTGKSHVYKE---VSPNVRLISGGQTTVANLFYNMA--------TRQIGLVGL--WDVVAFDEVAGIRF  290 (683)
T ss_pred             CCcchhhcCCCccCccceehc---cCCceEEeeCCcccHHHHHHHHh--------hccccceee--eeeeeehhhccccc
Confidence            456999999999999999774   45667777887776665653211        123343332  3578899987753 


Q ss_pred             --hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecC
Q psy11213        447 --DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAAN  484 (621)
Q Consensus       447 --~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~N  484 (621)
                        ++-...|-..|+.+...-.+  ....-+|...+++--|
T Consensus       291 kdkDg~qilKDYMaSGsf~RG~--~~v~~~ASlVFvGNvn  328 (683)
T COG4930         291 KDKDGMQILKDYMASGSFERGD--KKVVSDASLVFVGNVN  328 (683)
T ss_pred             cCccHHHHHHHHHhcCCccccc--ccccccceEEEEeccc
Confidence              33456778889998876522  2222334344444444

>PRK02496 adk adenylate kinase; Provisional

Probab=94.29  E-value=0.037  Score=53.39  Aligned_cols=29  Identities=14%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+++.|+||+|||++++.+++........
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~   31 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS   31 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            58999999999999999999876543433

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.28  E-value=0.03  Score=51.89  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++++|+||+|||+++..++..+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999987753

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PLN02200 adenylate kinase family protein

Probab=94.27  E-value=0.043  Score=55.34  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .++++|+||+|||++++.+++.++-..+.
T Consensus        45 ii~I~G~PGSGKsT~a~~La~~~g~~his   73 (234)
T PLN02200         45 ITFVLGGPGSGKGTQCEKIVETFGFKHLS   73 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            78999999999999999999886544433

>PTZ00202 tuzin; Provisional

Probab=94.21  E-value=0.04  Score=59.84  Aligned_cols=99  Identities=13%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213        500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA  579 (621)
Q Consensus       500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~  579 (621)
                      ..+....|-|.|  |.++++-+.++-..-.+|.+......  ...+.-.-+..++.+.++.+++......+-..++|.+.
T Consensus       403 lt~~~~~lprld--f~~vp~fsr~qaf~y~~h~~dal~l~--~fve~vgtns~d~del~aav~qr~vs~~~yt~~kl~ka  478 (550)
T PTZ00202        403 LTIANTLLPRLD--FYLVPNFSRSQAFAYTQHAIDALSLE--HFVDVVGTNSNDLDELLAAVRQRRVSAAEYTNQKLLKA  478 (550)
T ss_pred             cchhcccCccce--eEecCCCCHHHHHHHHhhccchHHhh--HHHHhhcCCcccHHHHHHHHHhcCCCHHHHhhHHHHHH
Confidence            345667788987  55567777777777777776421100  00011112344567777777777666666677777776


Q ss_pred             HHHHHHHhhcCCCCCccCHHHHHHHHHHHH
Q psy11213        580 YTELRKVARNSRDMSYTSARNLLAILRLST  609 (621)
Q Consensus       580 y~~lR~~~~~~~~~~~~t~R~leslirla~  609 (621)
                      -.+++.....       ++.--.++.+||+
T Consensus       479 mrql~aa~~~-------~~~lr~a~~~la~  501 (550)
T PTZ00202        479 MRQLQAAWAG-------DPQLRAAVKRLAA  501 (550)
T ss_pred             HHHHHHHhCC-------CHHHHHHHHHHhc
Confidence            4444443221       2333345566654

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=94.21  E-value=0.046  Score=50.15  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      |.+.|+||+|||++++.+++.+.-..+..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            689999999999999999998654444433

>PF05729 NACHT: NACHT domain

Probab=94.19  E-value=0.036  Score=51.70  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ++|.|+||+|||++++.++..+
T Consensus         3 l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999988663

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=94.16  E-value=0.036  Score=62.63  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ++|+.|++|+|||+|+|+++.+.|-
T Consensus       421 ~llI~G~SG~GKTsLlRaiaGLWP~  445 (604)
T COG4178         421 RLLITGESGAGKTSLLRALAGLWPW  445 (604)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCcc
Confidence            8999999999999999999999874

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.14  E-value=0.07  Score=53.17  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=41.3

Q ss_pred             ccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        337 ENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       337 ~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +-+.+..||+...+..|-..+..+.         .|-++|+.|.|||+|+|.+..+.+.
T Consensus         7 ~nl~k~yp~~~~aL~~Vnl~I~~GE---------~VaiIG~SGaGKSTLLR~lngl~d~   56 (258)
T COG3638           7 KNLSKTYPGGHQALKDVNLEINQGE---------MVAIIGPSGAGKSTLLRSLNGLVDP   56 (258)
T ss_pred             eeeeeecCCCceeeeeEeEEeCCCc---------EEEEECCCCCcHHHHHHHHhcccCC
Confidence            4566788898888888876666666         8999999999999999999987543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.14  E-value=0.032  Score=53.29  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=19.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -++++.|+||+|||+|++.+...+..
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999988777543

>PRK13948 shikimate kinase; Provisional

Probab=94.10  E-value=0.055  Score=52.44  Aligned_cols=31  Identities=23%  Similarity=0.109  Sum_probs=27.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      +|+|+|.+|+|||++.+.+++.+...++.++
T Consensus        12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D   42 (182)
T PRK13948         12 WVALAGFMGTGKSRIGWELSRALMLHFIDTD   42 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence            8999999999999999999998877665544

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=94.10  E-value=0.083  Score=56.34  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      =++++|||+||||.+.-.+.+.+...+.+- .              .....|-++|    ++|..|.+||+....-=+..
T Consensus       264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf-~--------------Ns~ShFWLqP----L~d~Ki~llDDAT~~cW~Y~  324 (432)
T PF00519_consen  264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-V--------------NSKSHFWLQP----LADAKIALLDDATYPCWDYI  324 (432)
T ss_dssp             EEEEESSCCCSHHHHHHHHHHHHTSEEE-G-G--------------GTTSCGGGGG----GCT-SSEEEEEE-HHHHHHH
T ss_pred             EEEEECCCCCchhHHHHHHHHHhCCEEEEe-c--------------CCCCcccccc----hhcCcEEEEcCCcccHHHHH
Confidence            688999999999999999988864333221 1              1122344444    77889999999865221111


Q ss_pred             -hhhHhhhcceEEEEec---CCeEEecCCcceEEeecCCC
Q psy11213        451 -TAIHEVMEQQTISIAK---AGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       451 -~~L~eame~q~isi~k---~gi~~~l~ar~~viAa~Np~  486 (621)
                       .-|..+++...|+|..   +-+...+|.   +|-|+|-.
T Consensus       325 D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~d  361 (432)
T PF00519_consen  325 DTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNID  361 (432)
T ss_dssp             HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-
T ss_pred             HHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCC
Confidence             3466778888999843   233444443   56677754

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.09  E-value=0.051  Score=53.92  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=26.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .|+++|+||+|||++++.+++...-..+..|
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~   32 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG   32 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence            5899999999999999999998766555544

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.04  E-value=0.054  Score=51.45  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=25.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      +++|+|.||+|||++++.+++.+....+..
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~   33 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDT   33 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence            789999999999999999999876555543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=94.04  E-value=0.034  Score=52.72  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|++.|.||||||++++.++..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~l   23 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLREL   23 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHHh
Confidence            5899999999999999999843

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=94.01  E-value=0.2  Score=50.30  Aligned_cols=128  Identities=9%  Similarity=0.042  Sum_probs=75.9

Q ss_pred             cEEEeCCCC-cchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc---ccc-ee------eeccc---eeecCCCe
Q psy11213        371 NICLMGDPG-VAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI---TNE-MV------LEGGA---LVLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PG-tGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~---~g~-~~------l~~Ga---lvlAd~gi  436 (621)
                      .-|+.|+.+ +||.-++..+++.+-......|..+.   +. -+..+..   .|. ..      +..-.   -..+..-|
T Consensus        17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD---~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV   92 (263)
T PRK06581         17 SWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPD---YH-FIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV   92 (263)
T ss_pred             eeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCC---EE-EEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence            679999997 99999999988875221111111110   00 0000000   000 00      00000   01224469


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      ++|+++++|+....++|+..+|+-             |.. ..++.|.|+.              .+.+++.||+  ..+
T Consensus        93 iII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~~~--------------~LLpTIrSRC--q~i  143 (263)
T PRK06581         93 AIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSRAA--------------SIISTIRSRC--FKI  143 (263)
T ss_pred             EEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCChh--------------hCchhHhhce--EEE
Confidence            999999999999999999999973             222 3456677776              6899999999  555


Q ss_pred             ecCCCChHHHHHHHHH
Q psy11213        516 IQDKPDRDNDLKLAQH  531 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~  531 (621)
                      ....|+.....++..+
T Consensus       144 ~~~~p~~~~~~e~~~~  159 (263)
T PRK06581        144 NVRSSILHAYNELYSQ  159 (263)
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            5566666555554443

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=93.96  E-value=0.041  Score=62.89  Aligned_cols=26  Identities=8%  Similarity=0.060  Sum_probs=22.5

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~  459 (621)
                      -.+++|||+.+++......|++++..
T Consensus       260 ~dvlIiDEaSMvd~~l~~~ll~al~~  285 (586)
T TIGR01447       260 LDVLVVDEASMVDLPLMAKLLKALPP  285 (586)
T ss_pred             ccEEEEcccccCCHHHHHHHHHhcCC
Confidence            36999999999999888889888864

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=93.96  E-value=0.053  Score=52.27  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecC-c-cccee-eeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDP-I-TNEMV-LEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~-~-~g~~~-l~~GalvlAd~gi~~IDEidk  444 (621)
                      -+.|+|+.|+|||+|++.++.+.+..   +...|..      .+....+. . .|+.. +.-......+..++++||-..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts  100 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------PVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA  100 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------EEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            67899999999999999999986431   1111110      11111111 1 12111 011112223678999999764


Q ss_pred             -CChhhhhhhHhhhcc
Q psy11213        445 -LPDADRTAIHEVMEQ  459 (621)
Q Consensus       445 -~~~~~~~~L~eame~  459 (621)
                       ++...+..+.+++.+
T Consensus       101 ~LD~~~~~~l~~~l~~  116 (177)
T cd03222         101 YLDIEQRLNAARAIRR  116 (177)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence             667777777777654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13946 shikimate kinase; Provisional

Probab=93.92  E-value=0.06  Score=52.09  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      -+|+|+|.||+|||++++.+++.+....+.++
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D   42 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   42 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence            38999999999999999999999766555444

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.85  E-value=0.055  Score=56.44  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=23.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      -++++|+||+|||++++.+++.++...+
T Consensus         4 liil~G~pGSGKSTla~~L~~~~~~~~~   31 (300)
T PHA02530          4 IILTVGVPGSGKSTWAREFAAKNPKAVN   31 (300)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHCCCCEE
Confidence            5788999999999999999998753333

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.85  E-value=0.048  Score=52.24  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++++|+||+|||++++.++..++
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999988754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.83  E-value=0.067  Score=52.66  Aligned_cols=39  Identities=31%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhh
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |+...+.||=.....+.         -+.++||.|+|||+|+|.+..+
T Consensus        13 g~~~VLkgi~l~v~~Ge---------vv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          13 GDKEVLKGISLSVEKGE---------VVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CCeEEecCcceeEcCCC---------EEEEECCCCCCHHHHHHHHHCC
Confidence            55555666654444444         6889999999999999999776

>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides

Probab=93.83  E-value=0.082  Score=54.38  Aligned_cols=147  Identities=10%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      -+.++|||+||||.|+++|++.+|.--.....                ...+.+..    ..++-+++-||. .|.++..
T Consensus       115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~----------------n~nF~f~d----~~~k~l~~weE~-~~~~~~v  173 (271)
T PF01057_consen  115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN----------------NNNFPFQD----CFNKRLIWWEEP-NMYPDEV  173 (271)
T ss_dssp             EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT----------------TTCCCCCC----CCCECEEECTCG-GCCTTCH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC----------------CCCCChhh----hhhccEEEeccc-CccHHHH
Confidence            68999999999999999999887542211111                12222211    123456677887 4555566


Q ss_pred             hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHH
Q psy11213        451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQ  530 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~  530 (621)
                      ..+-..+.-..+.|.........=.++-||.++|-.--.......  ....-..||-+|+. .+-+.             
T Consensus       174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~di~~v~~g~~--~s~~h~~~L~~rm~-~~~~~-------------  237 (271)
T PF01057_consen  174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNNDITFVVDGNT--VSDAHAQPLKDRMY-KFNFT-------------  237 (271)
T ss_dssp             HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECCECTSCEESSC--EE-TCHHCCCCCEE-CCCHH-------------
T ss_pred             HHHHHHhCCCceEeecccCCceEecCCceEEEeccceEEEeeCCE--ecHHHHHHHHHHhH-hhhhh-------------
Confidence            667677777777775333333333345566677653111000000  00112346777772 22211             


Q ss_pred             HHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc
Q psy11213        531 HITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG  563 (621)
Q Consensus       531 ~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~  563 (621)
                      ..+.         .....++.++++.++.+++.
T Consensus       238 ~~l~---------~~~g~it~~d~~~~l~W~~~  261 (271)
T PF01057_consen  238 RQLP---------PAFGPITPEDVKQFLQWSEQ  261 (271)
T ss_dssp             CHHH---------CCSS-SSHHCCHHHHHHHCH
T ss_pred             eecC---------cccCCcCHHHHHHHHHHHhc
Confidence            0111         12467888888999888876

Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.

>PRK08233 hypothetical protein; Provisional

Probab=93.83  E-value=0.049  Score=52.07  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      =|.+.|+||+|||++++.+++.++
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            467889999999999999999875

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=93.82  E-value=0.11  Score=48.28  Aligned_cols=82  Identities=21%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecCccccee--eeccceeecCCCeeEecCCC-C
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDPITNEMV--LEGGALVLADQGICCIDEFD-K  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~~~g~~~--l~~GalvlAd~gi~~IDEid-k  444 (621)
                      .+.++|++|+|||+|++.++...+..   ++..|.      ...+....-..|+..  .-+-++ ..+..++++||-. .
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral-~~~p~illlDEP~~~  100 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLL-LENPNLLLLDEPTNH  100 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHH-hcCCCEEEEeCCccC
Confidence            78899999999999999999886531   111111      000111111122211  012222 2367899999975 5


Q ss_pred             CChhhhhhhHhhhcc
Q psy11213        445 LPDADRTAIHEVMEQ  459 (621)
Q Consensus       445 ~~~~~~~~L~eame~  459 (621)
                      ++...+..+.+.+.+
T Consensus       101 LD~~~~~~l~~~l~~  115 (144)
T cd03221         101 LDLESIEALEEALKE  115 (144)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777788888888864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=93.72  E-value=0.2  Score=52.07  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      ..-|++||+.|+|++...++|+..+|+-             |.+ ..|+.|.|+.              .+.+++.||+-
T Consensus       104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRcq  156 (290)
T PRK07276        104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRTQ  156 (290)
T ss_pred             CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcce
Confidence            4469999999999999999999999972             222 3456666765              68999999993

>PRK14527 adenylate kinase; Provisional

Probab=93.71  E-value=0.05  Score=52.88  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++++|+||+|||++++.+++...
T Consensus         8 ~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          8 VVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999987753

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.68  E-value=0.046  Score=57.43  Aligned_cols=24  Identities=42%  Similarity=0.484  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++|+|+||||||.|+.++++.+.
T Consensus       158 gl~L~G~~G~GKThLa~Aia~~l~  181 (306)
T PRK08939        158 GLYLYGDFGVGKSYLLAAIANELA  181 (306)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999998864

>PRK14529 adenylate kinase; Provisional

Probab=93.65  E-value=0.053  Score=54.26  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+++.+....+
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i   29 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHI   29 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence            6899999999999999999998654333

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=93.59  E-value=0.048  Score=53.82  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .++.||||||||+++..+...+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHh
Confidence            7899999999998776665553

>cd01878 HflX HflX subfamily

Probab=93.54  E-value=0.15  Score=49.73  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.++|+++|+||+|||+|++.+...
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcc
Confidence            4569999999999999999988765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=93.51  E-value=0.13  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ||+++|++|+|||+|+..+...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhh
Confidence            6899999999999999998764

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG2545|consensus

Probab=93.49  E-value=2.7  Score=45.21  Aligned_cols=206  Identities=20%  Similarity=0.226  Sum_probs=121.3

Q ss_pred             CcccEEEeCCCCc--chhHHHHHHHhhccccEEecCCCCccccce-EEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        368 GNINICLMGDPGV--AKSQLLSYIERLARRSQYTTGRGSSGVGLT-AAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       368 g~i~vLL~G~PGt--GKS~ll~~ia~~~pr~~~~~g~~~s~~gLt-a~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |+.-+=|+|=|--  =-|+|-+.+..++|++++..-....   |. ++..-.+.-+.-.+.+|.|-+|+|--++|||=..
T Consensus       308 GkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~---lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeL  384 (543)
T KOG2545|consen  308 GKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEE---LNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETEL  384 (543)
T ss_pred             eeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHh---hcccCccccccccccccccceeecCCCceEEeehhhc
Confidence            5666666665543  4567777788888888765322111   11 1111111122235789999999999999999643


Q ss_pred             -------CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        445 -------LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       445 -------~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                             ..-..-+.|-..+++|.+.-.-.--....++++.|+-.+-   ||          .-||+.+-=|.+     .
T Consensus       385 qqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSe---Gr----------silPADl~i~lq-----p  446 (543)
T KOG2545|consen  385 QQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSE---GR----------SILPADLGIRLQ-----P  446 (543)
T ss_pred             CCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeC---Cc----------ccCcccccccCC-----C
Confidence                   2222335666778888876533333345566666665542   33          113333211211     1


Q ss_pred             CCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213        518 DKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS  597 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t  597 (621)
                      +.++.      .              .-..+=+....|.|+..+|...-.++++..++|..-|+++|+....      ..
T Consensus       447 ~~v~~------l--------------e~~tps~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq~n~~------sn  500 (543)
T KOG2545|consen  447 DSVDT------L--------------EFPTPSDLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQYNKE------SN  500 (543)
T ss_pred             CCCCc------c--------------ccCChhHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhhCcc------cc
Confidence            11110      0              0001123445677888888878889999999999999999987443      23


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCC
Q psy11213        598 ARNLLAILRLSTALARLRLCDEF  620 (621)
Q Consensus       598 ~R~leslirla~A~Akl~lr~~V  620 (621)
                      ...|-.++-+|+-.++-.++..+
T Consensus       501 addLs~lLv~sRlls~S~G~ttl  523 (543)
T KOG2545|consen  501 ADDLSLLLVCSRLLSKSFGRTTL  523 (543)
T ss_pred             hhHHHHHHHHHHHHHHhhccchh
Confidence            56677777788888887777654

>PLN02459 probable adenylate kinase

Probab=93.49  E-value=0.077  Score=54.18  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=26.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      .+++|+|+||+|||++++.+++...-..+.+|.
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gd   62 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGD   62 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence            489999999999999999999986554444443

>PLN02674 adenylate kinase

Probab=93.46  E-value=0.07  Score=54.08  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=25.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .+|+|+|+||+||+++++.+++...-....+|
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~G   63 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATG   63 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence            38999999999999999999998654443333

>KOG0482|consensus

Probab=93.46  E-value=0.036  Score=60.36  Aligned_cols=45  Identities=44%  Similarity=0.516  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhhHHHhhhhHHHHH
Q psy11213         45 FSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFL   93 (621)
Q Consensus        45 ~k~~~~~fl~~f~~~~~~~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl   93 (621)
                      -|++++.||.+|+..+..|    +|.++|.+.++||+.+.++||||-+.
T Consensus        13 dk~~~~~fl~e~~e~~~~~----kY~~~L~eia~Re~~ai~vdldDi~~   57 (721)
T KOG0482|consen   13 DKNKIKKFLDEFYEDNELG----KYMNQLQEIANREQNAIEVDLDDIAE   57 (721)
T ss_pred             hhHHHHHHHHhhhccCchh----HHHHHHHHHhcccceeEEEehHHHhh
Confidence            5899999999999777666    99999999999999999999998553

>TIGR03263 guanyl_kin guanylate kinase

Probab=93.41  E-value=0.059  Score=51.59  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -++|+|++|+|||+|++.+++..+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCcc
Confidence            4789999999999999999997655

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.28  E-value=0.06  Score=50.77  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=17.8

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |.|.|.||||||+|++.+++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999977

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.18  E-value=0.085  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++|.|+.|+|||+|+|.+++.+.
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.18  E-value=0.16  Score=54.24  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++|++|+|||++++++....+
T Consensus       124 ~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       124 LILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            899999999999999999887654

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=93.16  E-value=0.053  Score=54.07  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHH
Q psy11213        370 INICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      ..+|++|+||+|||++++.++
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcC
Confidence            479999999999999999885

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=93.13  E-value=0.059  Score=64.77  Aligned_cols=88  Identities=15%  Similarity=0.088  Sum_probs=47.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---cEEec-CCCCccccceEEEeecCcc-cce--eeeccceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---SQYTT-GRGSSGVGLTAAVMKDPIT-NEM--VLEGGALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~-g~~~s~~gLta~~~~~~~~-g~~--~l~~GalvlAd~gi~~IDEid  443 (621)
                      -+++.|.||||||++++.+...+..   .+... -.+..+..|....-....| ..|  .+..|...+....+++|||+.
T Consensus       364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS  443 (988)
T PRK13889        364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG  443 (988)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence            4679999999999999987766432   12111 1111111111000000000 001  112233334566799999999


Q ss_pred             CCChhhhhhhHhhhc
Q psy11213        444 KLPDADRTAIHEVME  458 (621)
Q Consensus       444 k~~~~~~~~L~eame  458 (621)
                      +++......|+...+
T Consensus       444 Mv~~~~m~~LL~~a~  458 (988)
T PRK13889        444 MVGTRQLERVLSHAA  458 (988)
T ss_pred             cCCHHHHHHHHHhhh
Confidence            999887777776543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.13  E-value=0.088  Score=41.47  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..+|.|+.|+|||+|+.++.-.+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999987763

>PRK04040 adenylate kinase; Provisional

Probab=93.09  E-value=0.09  Score=51.20  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|+++|.||+|||++++.+++.++
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999999875

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=93.06  E-value=0.08  Score=48.70  Aligned_cols=24  Identities=38%  Similarity=0.407  Sum_probs=21.7

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +.|+||+|+|||+|++.+++..+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            678999999999999999998664

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd04177 RSR1 RSR1 subgroup

Probab=92.98  E-value=0.079  Score=49.94  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +++++|+|+||+|||+|++++.+-
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999998644

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0064|consensus

Probab=92.98  E-value=0.12  Score=56.85  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +.|+|+.||.|||||.|.|.+..+.|-
T Consensus       508 G~hLLItGPNGCGKSSLfRILggLWPv  534 (728)
T KOG0064|consen  508 GMHLLITGPNGCGKSSLFRILGGLWPV  534 (728)
T ss_pred             CceEEEECCCCccHHHHHHHHhccCcc
Confidence            469999999999999999999999874

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=92.96  E-value=0.27  Score=50.64  Aligned_cols=30  Identities=13%  Similarity=0.203  Sum_probs=25.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      |.||+|.+|+||.+++|.++.+..-.++..
T Consensus        33 h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i   62 (268)
T PF12780_consen   33 HALLVGVGGSGRQSLARLAAFICGYEVFQI   62 (268)
T ss_dssp             EEEEECTTTSCHHHHHHHHHHHTTEEEE-T
T ss_pred             CeEEecCCCccHHHHHHHHHHHhccceEEE
Confidence            999999999999999999998876666543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK00300 gmk guanylate kinase; Provisional

Probab=92.93  E-value=0.08  Score=51.84  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++...+
T Consensus         7 ~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          7 LIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            689999999999999999999876

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=92.90  E-value=0.069  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=22.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +-.+||.||||||||.|+-++++.+..
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~   76 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGE   76 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence            458999999999999999999999654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=92.89  E-value=0.09  Score=50.95  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++++|++|+|||+++++++...|
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            899999999999999999998865

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.87  E-value=0.11  Score=50.26  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999987743

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=92.87  E-value=0.079  Score=49.46  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ++++|.||+|||++++.++..+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999986

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=92.87  E-value=0.071  Score=47.08  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+++|.||+|||+|++++..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999986

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK01184 hypothetical protein; Provisional

Probab=92.83  E-value=0.1  Score=50.23  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=18.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|+|+|+||+|||++++ +++...
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g   25 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMG   25 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcC
Confidence            57899999999999988 445443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=92.81  E-value=0.084  Score=49.11  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|+||+|||+|+.++...
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999988754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.80  E-value=0.14  Score=51.61  Aligned_cols=24  Identities=33%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      =|.++||.|||||+|++.+|.+..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578899999999999999999854

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=92.77  E-value=0.086  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+|+|+|+||+|||+|++.+...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999988754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=92.76  E-value=0.084  Score=56.30  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|+|++|++|+|||++++++....|.
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHcccCC
Confidence            39999999999999999999988764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=92.74  E-value=0.12  Score=54.77  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+.|+||.|||||++||.+|.+-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57788999999999999999884

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=92.74  E-value=0.099  Score=49.11  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=26.0

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      |-+-|+||+|||++++.+|+.+.-..+.+|.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~   33 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT   33 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence            5678999999999999999998776666554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.72  E-value=0.16  Score=50.01  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999997743

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=92.69  E-value=0.15  Score=50.89  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.|++..+.++=..+..+.         .+.|+|++|+|||+|++.++...
T Consensus        31 ~~~~~~il~~vs~~i~~Ge---------~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          31 EVGEFWALKDVSFEVPRGE---------RIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             hcCCeEEEeeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhCCC
Confidence            4455555555544444444         78999999999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=92.68  E-value=0.079  Score=53.82  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+|+|.||+|||++++.+++.+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK04182 cytidylate kinase; Provisional

Probab=92.67  E-value=0.095  Score=49.86  Aligned_cols=29  Identities=17%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|+|.|.||+|||++++.+++.+....+.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            48899999999999999999986654443

>cd04124 RabL2 RabL2 subfamily

Probab=92.66  E-value=0.09  Score=49.24  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|+||+|||+|++.+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999987754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=92.65  E-value=0.12  Score=50.84  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      -+++.|.||+|||++++.++..+....
T Consensus         5 ~i~i~G~~G~GKst~a~~l~~~~~~~~   31 (197)
T PRK12339          5 IHFIGGIPGVGKTSISGYIARHRAIDI   31 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            588999999999999999998865433

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=92.55  E-value=0.068  Score=64.68  Aligned_cols=84  Identities=13%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCc---------cccceEEEeecCcccce--eeeccceeecCCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSS---------GVGLTAAVMKDPITNEM--VLEGGALVLADQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s---------~~gLta~~~~~~~~g~~--~l~~GalvlAd~gi~~  438 (621)
                      -.++.|.+|||||++++.+...+...-+ +.|..++         ..|+.+..+     -.|  .+..|.-.+..+.+++
T Consensus       399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~ll~~~~~~~~l~~~~vlV  473 (1102)
T PRK13826        399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWELRWNQGRDQLDNKTVFV  473 (1102)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHHhhhccCccCCCCCcEEE
Confidence            5789999999999999999876432111 1111111         112221111     011  1123444455567999


Q ss_pred             ecCCCCCChhhhhhhHhhhcc
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~  459 (621)
                      |||..+++......|+...+.
T Consensus       474 IDEAsMv~~~~m~~Ll~~~~~  494 (1102)
T PRK13826        474 LDEAGMVASRQMALFVEAVTR  494 (1102)
T ss_pred             EECcccCCHHHHHHHHHHHHh
Confidence            999999998888888887763

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=92.55  E-value=0.1  Score=55.54  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=23.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|++++|++|+|||++++++....|.
T Consensus       161 ~nili~G~tgSGKTTll~aL~~~ip~  186 (332)
T PRK13900        161 KNIIISGGTSTGKTTFTNAALREIPA  186 (332)
T ss_pred             CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence            39999999999999999999988774

>PF13479 AAA_24: AAA domain

Probab=92.47  E-value=0.092  Score=52.10  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+.++|+|+||+|||+++..+    |+..+.
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i   29 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL----PKPLFI   29 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence            468999999999999998877    665554

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=92.46  E-value=0.15  Score=58.22  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|.|+|.||+|||++++.+++.+.
T Consensus       394 ~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        394 TVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             EEEEECCCCChHHHHHHHHHHHhh
Confidence            789999999999999999999865

>smart00175 RAB Rab subfamily of small GTPases

Probab=92.44  E-value=0.097  Score=48.62  Aligned_cols=23  Identities=48%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|++.+...
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999988644

Rab GTPases are implicated in vesicle trafficking.

>PRK06547 hypothetical protein; Provisional

Probab=92.40  E-value=0.13  Score=49.44  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|++.|++|+|||++++.+++.+.
T Consensus        17 ~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         17 TVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            677789999999999999998754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=92.38  E-value=0.11  Score=48.90  Aligned_cols=29  Identities=17%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|.+.|+||+|||++++.+++.++-..+.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~   30 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLIS   30 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            37899999999999999999986554444

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR00235 udk uridine kinase

Probab=92.37  E-value=0.1  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|.++|++|+|||+|++.++..++
T Consensus         8 vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         8 IIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=92.35  E-value=0.24  Score=49.20  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -++|.||.|+|||+++|.++.
T Consensus        31 ~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          31 IMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            588999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=92.33  E-value=0.1  Score=47.28  Aligned_cols=23  Identities=43%  Similarity=0.651  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|+..+...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999988654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.33  E-value=0.17  Score=49.99  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            789999999999999999998753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd00157 Rho Rho (Ras homology) family

Probab=92.32  E-value=0.11  Score=48.78  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999988654

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00154 Rab Rab family

Probab=92.30  E-value=0.11  Score=47.45  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|+..+...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999988654

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK05541 adenylylsulfate kinase; Provisional

Probab=92.28  E-value=0.1  Score=49.90  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..|+++|.||+|||++++.+++.+.
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999988764

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=92.28  E-value=0.1  Score=59.92  Aligned_cols=27  Identities=7%  Similarity=0.097  Sum_probs=23.0

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQ  460 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q  460 (621)
                      ..+++|||..+++-.....|++++..+
T Consensus       266 ~dvlIvDEaSMvd~~lm~~ll~al~~~  292 (615)
T PRK10875        266 LDVLVVDEASMVDLPMMARLIDALPPH  292 (615)
T ss_pred             CCeEEEChHhcccHHHHHHHHHhcccC
Confidence            369999999999988888899988653

>cd04113 Rab4 Rab4 subfamily

Probab=92.22  E-value=0.11  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++++++|+||+|||+|++.+...
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999988643

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.21  E-value=0.11  Score=47.92  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+++|+||+|||+|++.+..-
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999888753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=92.21  E-value=0.12  Score=46.87  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.++|++|+|||+|++.++...+
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            788999999999999999988753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.20  E-value=0.098  Score=51.05  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      |+|.|.||+|||++++.+++.+..-
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~~   28 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQE   28 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHHh
Confidence            6899999999999999999997543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=92.20  E-value=0.19  Score=47.59  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|+|+.|+|||+|+.++...
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            7889999999999999988765

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd04155 Arl3 Arl3 subfamily

Probab=92.19  E-value=0.11  Score=49.01  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.++++|++|+|||+|++.+...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            468999999999999999998764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=92.17  E-value=0.095  Score=51.31  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=46.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecC-cccceeeecc--ceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGG--ALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~G--alvlAd~gi~~IDEid  443 (621)
                      -+.|+|.+|+|||+|++.++..+..    .++..|..... .+........ ...++...-+  +..+++.|..+|..+.
T Consensus        26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~~~  104 (198)
T PRK03846         26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-GLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFI  104 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-hhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence            6889999999999999999987531    23332211100 0111000100 0111111100  1223345666667676


Q ss_pred             CCChhhhhhhHhhhcc
Q psy11213        444 KLPDADRTAIHEVMEQ  459 (621)
Q Consensus       444 k~~~~~~~~L~eame~  459 (621)
                      ....+.+..+.+.|.+
T Consensus       105 ~~~~~~R~~~r~~l~~  120 (198)
T PRK03846        105 SPHRAERQMVRERLGE  120 (198)
T ss_pred             CCCHHHHHHHHHHccc
Confidence            6666778778777754

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=92.14  E-value=0.19  Score=49.24  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            789999999999999999987753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=92.13  E-value=0.12  Score=47.99  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..|+++|+||+|||+|+..+..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999888764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=92.11  E-value=0.11  Score=49.74  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=17.7

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+.|+||+|||+|+..++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999988776543

A related protein is found in archaea.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.10  E-value=0.19  Score=49.59  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            788999999999999999988753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=92.09  E-value=0.12  Score=48.72  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|+||+|||+|+.++...
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            48999999999999999988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=92.08  E-value=0.12  Score=50.50  Aligned_cols=22  Identities=23%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      |.|.|++|+|||+|++.++..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.03  E-value=0.17  Score=50.63  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=91.97  E-value=0.092  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             EeCCCCcchhHHHHHHHhhccc
Q psy11213        374 LMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       374 L~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |+|+||+|||++++.+++...-
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~   22 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL   22 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS
T ss_pred             CcCCCCCChHHHHHHHHHhcCc
Confidence            6899999999999999998643

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01862 Rab7 Rab7 subfamily

Probab=91.93  E-value=0.12  Score=48.47  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|++.+...
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01895 EngA2 EngA2 subfamily

Probab=91.92  E-value=0.54  Score=43.65  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|+.++.+.
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCc
Confidence            58999999999999999998664

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG2170|consensus

Probab=91.83  E-value=0.056  Score=55.54  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccc---cee-----eeccceeecCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITN---EMV-----LEGGALVLADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g---~~~-----l~~GalvlAd~gi~~IDEi  442 (621)
                      -+-|-|.|||||+..++.+|+-+-    ..|..+.-+-...+...=|...   .+.     ...|.+-.-...+.++||.
T Consensus       112 vLSfHG~tGTGKN~Va~iiA~n~~----~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~  187 (344)
T KOG2170|consen  112 VLSFHGWTGTGKNYVAEIIAENLY----RGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEV  187 (344)
T ss_pred             EEEecCCCCCchhHHHHHHHHHHH----hccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechh
Confidence            455679999999999999998743    3344433332222111101000   000     0123333446789999999


Q ss_pred             CCCChhhhhhhHhhhc
Q psy11213        443 DKLPDADRTAIHEVME  458 (621)
Q Consensus       443 dk~~~~~~~~L~eame  458 (621)
                      |||++.....|...++
T Consensus       188 DKmp~gLld~lkpfLd  203 (344)
T KOG2170|consen  188 DKLPPGLLDVLKPFLD  203 (344)
T ss_pred             hhcCHhHHHHHhhhhc
Confidence            9999999888888887

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.80  E-value=0.23  Score=49.78  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.79  E-value=0.2  Score=49.54  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        39 ~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         39 ALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999988753

>cd01131 PilT Pilus retraction ATPase PilT

Probab=91.76  E-value=0.13  Score=50.39  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++++||+|+|||++++++....+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            589999999999999998877754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PLN02165 adenylate isopentenyltransferase

Probab=91.75  E-value=0.17  Score=53.49  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=25.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .+.|+||+|+|||+|+..+++.++..+...+
T Consensus        45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD   75 (334)
T PLN02165         45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD   75 (334)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence            6899999999999999999999775544433

>cd04157 Arl6 Arl6 subfamily

Probab=91.72  E-value=0.12  Score=47.95  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+++|+||+|||+|++.+...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~   22 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPE   22 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHccc
Confidence            5899999999999999988764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK08356 hypothetical protein; Provisional

Probab=91.70  E-value=0.2  Score=48.86  Aligned_cols=22  Identities=14%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..++|+|+||+|||++++++++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999965

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.68  E-value=0.25  Score=48.34  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            889999999999999999987743

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=91.66  E-value=0.18  Score=48.52  Aligned_cols=25  Identities=36%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .+.++|++|+|||++++.++..+..
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            5789999999999999999998654

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=91.66  E-value=0.14  Score=47.76  Aligned_cols=22  Identities=23%  Similarity=0.587  Sum_probs=19.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|++|+|||+|+.++..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999988764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.65  E-value=0.23  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|+.|+|||+|++.++...
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78899999999999999998774

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=91.64  E-value=0.14  Score=47.67  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+++|+||+|||+|++++...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=91.64  E-value=0.24  Score=49.37  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         35 FKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            789999999999999999988753

>PRK05480 uridine/cytidine kinase; Provisional

Probab=91.63  E-value=0.14  Score=50.44  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .-|.|.|++|+|||+|++.+++.+
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999986

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=91.63  E-value=0.22  Score=49.02  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998753

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=91.62  E-value=0.22  Score=49.07  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999988753

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=91.62  E-value=0.19  Score=50.70  Aligned_cols=24  Identities=38%  Similarity=0.641  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            788999999999999999998754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=91.59  E-value=1  Score=44.03  Aligned_cols=50  Identities=14%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .|.++||+.++|+....++|+..+|+-             |.+ ..+++|.||.              .+.++++||+
T Consensus        55 ~~k~iI~~a~~l~~~A~NaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRc  105 (206)
T PRK08485         55 EEKIIVIAAPSYGIEAQNALLKILEEP-------------PKNICFIIVAKSKN--------------LLLPTIRSRL  105 (206)
T ss_pred             CcEEEEEchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCchHHHhhh
Confidence            355679999999999999999999972             222 4677787876              6899999999

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.58  E-value=0.24  Score=48.65  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         29 LVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.58  E-value=0.22  Score=49.76  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        28 VTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=91.57  E-value=0.24  Score=49.81  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998854

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=91.56  E-value=0.13  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+++|+||+|||+|++.+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC
Confidence            4899999999999999988654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04117 Rab15 Rab15 subfamily

Probab=91.56  E-value=0.14  Score=48.00  Aligned_cols=20  Identities=40%  Similarity=0.664  Sum_probs=17.9

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      +|+++|+||+|||+|+..+.
T Consensus         2 ki~vvG~~~~GKTsli~~~~   21 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFT   21 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            68999999999999997664

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.55  E-value=0.27  Score=46.50  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .+.|+|+.|+|||+|++.++...+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~   52 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKP   52 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            8899999999999999999988653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.55  E-value=0.21  Score=53.21  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      =+.|.||.|||||++||.||..
T Consensus        33 f~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          33 FVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999987

>PRK00889 adenylylsulfate kinase; Provisional

Probab=91.54  E-value=0.14  Score=48.87  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|.||+|||++++.++..+.
T Consensus         6 ~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          6 TVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999998863

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=91.53  E-value=0.24  Score=47.77  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             cccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        342 VVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       342 ~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |.-|++....++-..+..+.         -+.+.|+.|+|||+|+|.++.++..
T Consensus        10 ~~R~e~~lf~~L~f~l~~Ge---------~~~i~G~NG~GKTtLLRilaGLl~p   54 (209)
T COG4133          10 CERGERTLFSDLSFTLNAGE---------ALQITGPNGAGKTTLLRILAGLLRP   54 (209)
T ss_pred             hccCcceeecceeEEEcCCC---------EEEEECCCCCcHHHHHHHHHcccCC
Confidence            44566666655544444444         5778999999999999999988643

>PLN02199 shikimate kinase

Probab=91.51  E-value=0.18  Score=52.24  Aligned_cols=31  Identities=13%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      +|+|+|.+|+|||++++.+++.+...++.++
T Consensus       104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD  134 (303)
T PLN02199        104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD  134 (303)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence            9999999999999999999998766655444

>cd00876 Ras Ras family

Probab=91.51  E-value=0.15  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+++|+||+|||+|+..+...
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988644

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK14737 gmk guanylate kinase; Provisional

Probab=91.51  E-value=0.18  Score=49.03  Aligned_cols=26  Identities=12%  Similarity=0.033  Sum_probs=22.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .-+.|+||+|+|||+|++.+.+..|.
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~~~   30 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEHPD   30 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence            35889999999999999999887665

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.51  E-value=0.13  Score=52.86  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      .++++.|++|+|||++++++....|..
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             eEEEEECCCccccchHHHHHhhhcccc
Confidence            499999999999999999999887665

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=91.46  E-value=0.12  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=18.7

Q ss_pred             cEEEeCCCCcchhH-HHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQ-LLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~-ll~~ia~~~  393 (621)
                      ++++.|++|+|||. ++..+....
T Consensus        26 ~~~i~~~~GsGKT~~~~~~~~~~~   49 (201)
T smart00487       26 DVILAAPTGSGKTLAALLPALEAL   49 (201)
T ss_pred             cEEEECCCCCchhHHHHHHHHHHh
Confidence            89999999999999 666665553

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=91.43  E-value=0.15  Score=46.75  Aligned_cols=23  Identities=35%  Similarity=0.626  Sum_probs=20.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|+||+|||+|+.++...
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            58999999999999999988653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=91.41  E-value=1.1  Score=45.36  Aligned_cols=192  Identities=15%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcc-cceeee-------ccceeec----CC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPIT-NEMVLE-------GGALVLA----DQ  434 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~-g~~~l~-------~GalvlA----d~  434 (621)
                      -+.++|+-|+|||.+.|++...++...    +......+..++..+...+-.. ..|...       -+...+.    .+
T Consensus        53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~  132 (269)
T COG3267          53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP  132 (269)
T ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            678899999999999997777766532    3333333443333322221111 111111       0111111    12


Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc--CCCHhHhccccE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI--QLPAALLSRFDL  512 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~--~L~~aLlsRFDl  512 (621)
                      -++++||...++.+...+|.-.++--.=     +     ..+.+|+-..-|.-         ....  .--..+-.|+++
T Consensus       133 v~l~vdEah~L~~~~le~Lrll~nl~~~-----~-----~~~l~ivL~Gqp~L---------~~~lr~~~l~e~~~R~~i  193 (269)
T COG3267         133 VVLMVDEAHDLNDSALEALRLLTNLEED-----S-----SKLLSIVLIGQPKL---------RPRLRLPVLRELEQRIDI  193 (269)
T ss_pred             eEEeehhHhhhChhHHHHHHHHHhhccc-----c-----cCceeeeecCCccc---------chhhchHHHHhhhheEEE
Confidence            4789999999988888777665542110     0     11133444444431         0000  011244458864


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRD  592 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~  592 (621)
                      .+. .++.+.++-....+|.+                         .-|....|.+++++...|...     .       
T Consensus       194 r~~-l~P~~~~~t~~yl~~~L-------------------------e~a~~~~~l~~~~a~~~i~~~-----s-------  235 (269)
T COG3267         194 RIE-LPPLTEAETGLYLRHRL-------------------------EGAGLPEPLFSDDALLLIHEA-----S-------  235 (269)
T ss_pred             EEe-cCCcChHHHHHHHHHHH-------------------------hccCCCcccCChhHHHHHHHH-----h-------
Confidence            433 33333333333333332                         223222577888888776542     1       


Q ss_pred             CCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        593 MSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       593 ~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                        ...||....+..+|.-.|....++.|+
T Consensus       236 --qg~P~lin~~~~~Al~~a~~a~~~~v~  262 (269)
T COG3267         236 --QGIPRLINNLATLALDAAYSAGEDGVS  262 (269)
T ss_pred             --ccchHHHHHHHHHHHHHHHHcCCCccc
Confidence              125888888888888888877777653

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=91.41  E-value=0.2  Score=48.68  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |.+.|.||+|||++++.+++.++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            57889999999999999999864

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd04159 Arl10_like Arl10-like subfamily

Probab=91.40  E-value=0.13  Score=46.95  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |.++|++|+|||+|++.+...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999998654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=91.37  E-value=0.23  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.36  E-value=0.26  Score=49.73  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         30 TLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=91.36  E-value=0.25  Score=50.25  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         33 IVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            789999999999999999998854

>cd01868 Rab11_like Rab11-like

Probab=91.35  E-value=0.15  Score=47.60  Aligned_cols=23  Identities=52%  Similarity=0.748  Sum_probs=20.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+|+++|+||+|||+|++++...
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999998643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=91.35  E-value=0.27  Score=48.79  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            688999999999999999987743

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.31  E-value=0.27  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         29 LLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998864

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=91.29  E-value=0.26  Score=43.33  Aligned_cols=20  Identities=25%  Similarity=0.511  Sum_probs=18.4

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -+.|+|++|+|||+|++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            68999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13808 adenylate kinase; Provisional

Probab=91.29  E-value=0.19  Score=53.25  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      +|+|+|+||+|||++++.+++......+.+|
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~g   32 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTG   32 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            6899999999999999999998655444433

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=91.29  E-value=0.16  Score=53.18  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++++|++|+|||++++++....|
T Consensus       134 ~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       134 NILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999988764

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=91.29  E-value=0.16  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++++++|+||+|||+|+..+...
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~   25 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQS   25 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Confidence            58999999999999999887654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04106 Rab23_lke Rab23-like subfamily

Probab=91.27  E-value=0.16  Score=47.22  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|+..+..-
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~   23 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKG   23 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999987653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=91.23  E-value=0.26  Score=48.89  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999987753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00017 cmk cytidylate kinase

Probab=91.21  E-value=0.21  Score=49.79  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      .|.+.|++|+|||++++.+++.++-..+.+|.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~   35 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA   35 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence            57899999999999999999887766655553

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=91.20  E-value=0.29  Score=50.30  Aligned_cols=24  Identities=33%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++.+.+
T Consensus        52 ~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         52 VIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            788999999999999999998864

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=91.19  E-value=0.24  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++.+.+
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          29 KVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            788999999999999999998864

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.19  E-value=0.28  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         30 ALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999988743

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=91.16  E-value=0.29  Score=49.28  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         31 IVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998854

>KOG0060|consensus

Probab=91.14  E-value=0.25  Score=55.01  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=23.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|+|++||.|||||.|+|.++.+.|
T Consensus       462 ~~LLItG~sG~GKtSLlRvlggLWp  486 (659)
T KOG0060|consen  462 QNLLITGPSGCGKTSLLRVLGGLWP  486 (659)
T ss_pred             CeEEEECCCCCchhHHHHHHhcccc
Confidence            4999999999999999999999976

>cd01860 Rab5_related Rab5-related subfamily

Probab=91.14  E-value=0.17  Score=46.99  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.++++|++|+|||+|++++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999988754

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.12  E-value=0.25  Score=48.92  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            788999999999999999988753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=91.12  E-value=0.17  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=23.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +++++|++|+|||++++++....|.
T Consensus       146 ~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       146 NIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCCc
Confidence            9999999999999999999988764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=91.11  E-value=0.25  Score=50.22  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        31 VLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999998864

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd01866 Rab2 Rab2 subfamily

Probab=91.10  E-value=0.17  Score=47.75  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..++++|+||+|||+|+..+...
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~   27 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDK   27 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999988654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=91.08  E-value=0.25  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999988753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.08  E-value=0.28  Score=49.71  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++.+.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         31 ITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            788999999999999999997753

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.05  E-value=0.3  Score=48.01  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          28 IYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcC
Confidence            788999999999999999987743

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=91.04  E-value=0.24  Score=47.61  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      |.|.|.||+|||++++.+++ ..-.++.++
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D   30 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD   30 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence            68999999999999999998 444444443

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=91.04  E-value=0.17  Score=46.80  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.++|+||+|||+|++.+...
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999988744

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01898 Obg Obg subfamily

Probab=91.03  E-value=0.16  Score=47.56  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|.++|+||+|||+|++.+...
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~   23 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNA   23 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04140 ARHI_like ARHI subfamily

Probab=91.03  E-value=0.18  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+++|++|+|||+|++.+..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~   23 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK   23 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999988754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=91.02  E-value=0.2  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus        35 ~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          35 VMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccC
Confidence            789999999999999999987753

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=91.01  E-value=0.34  Score=49.76  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++.+.+
T Consensus        47 ~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         47 VTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            789999999999999999998754

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=90.99  E-value=0.15  Score=49.70  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |.+.|++|+|||++++.++..+..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            578999999999999999998753

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=90.97  E-value=0.16  Score=47.96  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+++||.|+|||.+++++.-.
T Consensus        23 ~~~i~G~NgsGKS~~l~~i~~~   44 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLA   44 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999997554

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=90.96  E-value=0.16  Score=46.23  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.++|+||+|||+|+.++...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~   23 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGE   23 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            5889999999999999988644

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=90.96  E-value=0.31  Score=48.18  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998753

>KOG0058|consensus

Probab=90.96  E-value=0.29  Score=55.94  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+-||||.|.|||+++..+.+.-
T Consensus       496 ~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  496 VVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78899999999999999988873

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.95  E-value=0.3  Score=49.33  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         31 IYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            688999999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	621
3f9v_A	595	Crystal Structure Of A Near Full-Length Archaeal Mc		2e-54
2vl6_A	268	Structural Analysis Of The Sulfolobus Solfataricus		4e-12
3f8t_A	506	Crystal Structure Analysis Of A Full-Length Mcm Hom		2e-11
1ltl_A	279	The Dodecamer Structure Of Mcm From Archaeal M. The		1e-10

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 151/227 (66%), Gaps = 6/227 (2%)
Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
           +G+I+I ++GDPG AKSQ+L +I R+A R+ YTTG+GS+  GLTAAV+++  T E  LE 
Sbjct: 325 RGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEA 384
Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486
           GALVLAD GI  IDE DK+ D DR AIHE MEQQT+SIAKAGI+ +LNAR +++AA NP 
Sbjct: 385 GALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444
Query: 487 YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL 546
           +GRY  +R +  NI LP  +LSRFDL+++++D+P  + D +LA +I  VH       +  
Sbjct: 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPG-EQDRELANYILDVHSGK----STK 499
Query: 547 KPIDMSLVRRYIDLC-KGKNPTVPSSLTEHIVKAYTELRKVARNSRD 592
             ID+  +R+YI    K   P + S     I   + E+RK +  + D
Sbjct: 500 NIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPD 546

>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm Protein N-Terminal Domain Length = 268

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 47/273 (17%)
Query: 86  IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNN 145
           ID  D F IEF+   K +N   KY +++++L    + ++ I+  DV  FN +LA  I NN
Sbjct: 8   IDYRDVF-IEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINN 66
Query: 146 TRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQ 205
           T+        +I  +L       ++  DP                            Y +
Sbjct: 67  TK--------IILPILEGALYDHILQLDPT---------------------------YQR 91
Query: 206 DLMRRFEVYFVPPSSGKPTPI--REVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDM 263
           D+  +  V  V    G P  I  R++++T IGKL+ + G++ + T VK  +  ATY    
Sbjct: 92  DI-EKVHVRIV----GIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIH 146
Query: 264 --CGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQV 321
             C  E   P        +L  P+  C      G+  L    +K + +Q+  +QE  ++V
Sbjct: 147 PDCMQEFEWP-EDEEMPEVLEMPT-ICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 204
Query: 322 PVGNIPRGITVLCRGENTRQVVPGDHVSVSGIF 354
           P G +PR + ++   +      PGD V V+GI 
Sbjct: 205 PSGQLPRQLEIILEDDLVDSARPGDRVKVTGIL 237

>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGA 428
            +++ L G P V    L   ++ LA R  Y   R +    LTA + +D       L  GA
Sbjct: 239 RLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED---RGWALRAGA 295
Query: 429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG 488
            VLAD GI  +D  +  P+  R A+ E M++ T+++   GI   LNAR ++LAA NP  G
Sbjct: 296 AVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GIA--LNARCAVLAAINP--G 349
Query: 489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520
              P       I L    LS FDL+  +   P
Sbjct: 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDP 381

>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M. Thermoautotrophicum Length = 279

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 150 VQMFSELIFELLPDYKSHDVIAKDPLDIYIEH----RLLLEQRN---HPNPQELRN-SQN 201
           +Q + + +FE +  Y +   I  D LD+ +       LL+E+ +       Q +RN  + 
Sbjct: 24  LQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRL 83
Query: 202 RYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTC 261
           R   DL  RF             P+RE+++  IGK V V G+V ++ E++P +  A + C
Sbjct: 84  RKNVDLNIRF------SGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFEC 137
Query: 262 DMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLY-LQTRGSKFVKFQELKVQEHSDQ 320
             C        S+   T   +C       ++ GGR + L    S+F+  Q LK+QE  + 
Sbjct: 138 RGCMRHHAVTQSTNMITEPSLC-------SECGGRSFRLLQDESEFLDTQTLKLQEPLEN 190
Query: 321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSG 352
           +  G  PR ITV+   +    + PGD V V+G
Sbjct: 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	621
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	1e-140
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	1e-65
3f8t_A	506	Predicted ATPase involved in replication control,	1e-116
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	6e-44
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	1e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	2e-07

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  419 bits (1080), Expect = e-140
 Identities = 116/254 (45%), Positives = 164/254 (64%), Gaps = 7/254 (2%)

Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
           G+I+I ++GDPG AKSQ+L +I R+A R+ YTTG+GS+  GLTAAV+++  T E  LE G
Sbjct: 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAG 385

Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
           ALVLAD GI  IDE DK+ D DR AIHE MEQQT+SIAKAGI+ +LNAR +++AA NP +
Sbjct: 386 ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF 445

Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELK 547
           GRY  +R +  NI LP  +LSRFDL+++++D+P  + D +LA +I  VH           
Sbjct: 446 GRYISERPVSDNINLPPTILSRFDLIFILKDQPG-EQDRELANYILDVHSGKSTKN---- 500

Query: 548 PIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMS-YTSARNLLAIL 605
            ID+  +R+YI   +    P + S     I   + E+RK +  + D     + R L A++
Sbjct: 501 IIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALI 560

Query: 606 RLSTALARLRLCDE 619
           R+S A A++ L  E
Sbjct: 561 RISEAYAKMALKAE 574

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  225 bits (575), Expect = 1e-65
 Identities = 57/283 (20%), Positives = 112/283 (39%), Gaps = 39/283 (13%)

Query: 86  IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNN 145
           ID  D F+ EF+   K +N   KY +++++L    + ++ I+  DV  FN +LA  I NN
Sbjct: 2   IDYRDVFI-EFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINN 60

Query: 146 TRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQ 205
           T+  + +    +++ +                                          P 
Sbjct: 61  TKIILPILEGALYDHI--------------------------------------LQLDPT 82

Query: 206 DLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG 265
                 +V+       +   +R++++T IGKL+ + G++ + T VK  +  ATY      
Sbjct: 83  YQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPD 142

Query: 266 AETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGN 325
                        P ++     C      G+  L    +K + +Q+  +QE  ++VP G 
Sbjct: 143 CMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQ 202

Query: 326 IPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQG 368
           +PR + ++   +      PGD V V+GI      +  ++ ++ 
Sbjct: 203 LPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRA 245

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score =  354 bits (909), Expect = e-116
 Identities = 85/469 (18%), Positives = 148/469 (31%), Gaps = 107/469 (22%)

Query: 226 IREVKATHI----GKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLL 281
           I  V+         ++ + + VV    E+   +  A++               +      
Sbjct: 34  IEIVRTESFQRSLARVTSGKPVVLDLRELDSDL--ASWIATHARLVEPALRELVRTVAPD 91

Query: 282 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGE---- 337
           + P    +        + +    + +    + ++    +V          V    E    
Sbjct: 92  VEPRVRFRGLP---HRFRRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAV 148

Query: 338 --NTRQVVPGDHVSVSGI---------------------FLPLLRTGFRQVTQGNI---- 370
             +  ++ PG  V + GI                       P     FR++   +     
Sbjct: 149 RLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPAELEEFRELADKDPLTTF 208

Query: 371 --NIC---------------LMGDPGVAKS-----------------QLLSYIERLARRS 396
              I                L     V K+                  L   ++ LA R 
Sbjct: 209 ARAIAPLPGAEEVGKMLALQLFS--CVGKNSERLHVLLAGYPVVCSEILHHVLDHLAPRG 266

Query: 397 QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEV 456
            Y   R +    LTA + +D       L  GA VLAD GI  +D  +  P+  R A+ E 
Sbjct: 267 VYVDLRRTELTDLTAVLKEDR---GWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEA 323

Query: 457 MEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516
           M++ T+++        LNAR ++LAA NP  G   P       I L    LS FDL+  +
Sbjct: 324 MDKGTVTVDGIA----LNARCAVLAAINP--GEQWPSDPPIARIDLDQDFLSHFDLIAFL 377

Query: 517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKN--PTVPSSLTE 574
              P      +    +                   +L+RRY+     ++  P +     +
Sbjct: 378 GVDPRPGEPEEQDTEV----------------PSYTLLRRYLLYAIREHPAPELTEEARK 421

Query: 575 HIVKAYTELRKVARNSRDMS----YTSARNLLAILRLSTALARLRLCDE 619
            +   Y   R+       M       + R L ++ RL+ A AR+RL D+
Sbjct: 422 RLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDD 470

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Length = 268

 Score =  157 bits (398), Expect = 6e-44
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 39/269 (14%)

Query: 86  IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNN 145
           ID  D F+ EF+   K +N   KY +++++L    + ++ I+  DV  FN +LA  I NN
Sbjct: 8   IDYRDVFI-EFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINN 66

Query: 146 TRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQ 205
           T+  + +    +++ +                                          P 
Sbjct: 67  TKIILPILEGALYDHI--------------------------------------LQLDPT 88

Query: 206 DLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG 265
                 +V+       +   +R++++T IGKL+ + G++ + T VK  +  ATY      
Sbjct: 89  YQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPD 148

Query: 266 AETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGN 325
                        P ++     C      G+  L    +K + +Q+  +QE  ++VP G 
Sbjct: 149 CMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQ 208

Query: 326 IPRGITVLCRGENTRQVVPGDHVSVSGIF 354
           +PR + ++   +      PGD V V+GI 
Sbjct: 209 LPRQLEIILEDDLVDSARPGDRVKVTGIL 237

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Length = 279

 Score =  148 bits (376), Expect = 1e-40
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 56/276 (20%)

Query: 79  REQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDL 138
           R +         +F  EF  +    +++F+  ++          +I +D  D+E F+ DL
Sbjct: 5   RMKTVDKSKTLTKFE-EFFSLQDYKDRVFEAIEKY-----PNVRSIEVDYLDLEMFDPDL 58

Query: 139 ATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRN 198
           A  +       ++   + I  +    K+ D        + I                   
Sbjct: 59  ADLLIEKPDDVIRAAQQAIRNIDRLRKNVD--------LNI------------------- 91

Query: 199 SQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVAT 258
                      RF             P+RE+++  IGK V V G+V ++ E++P +  A 
Sbjct: 92  -----------RFS------GISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAV 134

Query: 259 YTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHS 318
           + C  C        S+   T   +C   +C          L    S+F+  Q LK+QE  
Sbjct: 135 FECRGCMRHHAVTQSTNMITEPSLCS--ECGGR----SFRLLQDESEFLDTQTLKLQEPL 188

Query: 319 DQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIF 354
           + +  G  PR ITV+   +    + PGD V V+G  
Sbjct: 189 ENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTL 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 110/670 (16%), Positives = 209/670 (31%), Gaps = 214/670 (31%)

Query: 20  LSFPVADRTTVSVPTLSSIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHR 79
           LS    D   +S   +S   +L      K +E + +FV+     N    Y   +S +   
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTE 101

Query: 80  EQVAIYIDLDDEFLIEFVKIDKDDNKIF-KYS-----------KQLSKLAHREQVAIY-- 125
           ++      +     IE      +DN++F KY+           + L +L   + V I   
Sbjct: 102 QRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 126 ---------IDL---DDVEEFNSD----LATNIQNNTRRYVQMFSELIFELLPDYKS-HD 168
                    +D+     V+         L     N+    ++M  +L++++ P++ S  D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 169 VIAKDPLDIY-IEHRL--LLEQRNHPNP-QELRNSQNRYPQDLMRRFEVYFVPPSSGKPT 224
             +   L I+ I+  L  LL+ + + N    L N QN                       
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---------------------- 256

Query: 225 PIREVKATHIG-KLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPIS----SLSFTP 279
             +   A ++  K++    + TR  +V           D   A T   IS    S++ T 
Sbjct: 257 --KAWNAFNLSCKIL----LTTRFKQV----------TDFLSAATTTHISLDHHSMTLT- 299

Query: 280 LLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVL------ 333
               P E   +                +K+ + + Q+   +V   N PR ++++      
Sbjct: 300 ----PDEVKSL---------------LLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRD 339

Query: 334 --CRGENTRQVVPGDHVSVSGIFL-----PLLRTGFRQ--VTQGNINICLMGDPGVAKSQ 384
                +N + V      ++    L        R  F +  V   + +I     P    + 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-----P----TI 390

Query: 385 LLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444
           LL     +      +             VM   + N++      LV            +K
Sbjct: 391 LL---SLIWFDVIKSD------------VMV--VVNKLHKYS--LV------------EK 419

Query: 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA 504
            P     +I  +         K      L+    I+         YN  ++ + +     
Sbjct: 420 QPKESTISIPSI---YLELKVKLENEYALHRS--IVD-------HYNIPKTFDSD----- 462

Query: 505 ALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDM----SLVRR-YID 559
                 DL+      P  D       HI + H         LK I+     +L R  ++D
Sbjct: 463 ------DLI-----PPYLDQ--YFYSHIGH-H---------LKNIEHPERMTLFRMVFLD 499

Query: 560 L----CKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL----RLSTAL 611
                 K ++ +   + +  I+    +L+       D      R + AIL    ++   L
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 612 ARLRLCDEFQ 621
              +  D  +
Sbjct: 560 ICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 45/343 (13%), Positives = 98/343 (28%), Gaps = 101/343 (29%)

Query: 24  VADRTTVSVPTLSSIFQLVIYFSE-KFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQV 82
           V D  + +  T  S+    +  +  + K  L++++     D         L     RE +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---------LP----REVL 323

Query: 83  AIYIDLDDEFLIE-FVKIDKDDNKIFKYSKQLSKLAHREQVAIYID-LDDVEE------- 133
                  +   +    +  +D    +   K ++       +   ++ L+  E        
Sbjct: 324 TT-----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 134 --FNSDLATNIQNNT--RRYVQMFSELIFELLPDYKSHDVIAKDP-------LDIYIE-- 180
             F      +I        +  +    +  ++     + ++ K P         IY+E  
Sbjct: 379 SVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 181 ---------HRLLLEQRN----------HPNPQE----------LRNSQNRYPQDLMRRF 211
                    HR +++  N           P   +          L+N ++     L R  
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM- 495

Query: 212 EVY----FVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAE 267
            V+    F+           E K  H     N  G +  +  ++ L     Y CD     
Sbjct: 496 -VFLDFRFL-----------EQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKY 541

Query: 268 TYQPISSLSFTP-----LLMCPSED-CQV---NKSGGRLYLQT 301
                + L F P     L+     D  ++    +    ++ + 
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEA 583

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 51/280 (18%), Positives = 86/280 (30%), Gaps = 56/280 (20%)

Query: 371 NICLMGDPGVAKSQL----------LSYIERLARRSQYTTGRGSSGVGLTAAVMKDP--- 417
            + + GD G  KS            +  +E     S            L+  V++ P   
Sbjct: 47  GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 106

Query: 418 ----------------------ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHE 455
                                    E   E G L  A++G   IDE + L D     + +
Sbjct: 107 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 166

Query: 456 VMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515
           V +     + + G+  R  AR  ++ + NP  G   P             LL RF L   
Sbjct: 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRP------------QLLDRFGLSVE 214

Query: 516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEH 575
           +    D +  +++ +         +    E +P DM +  + ++                
Sbjct: 215 VLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILE---------ARERLPK 265

Query: 576 IVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLR 615
           +    T L   A     +     R  L +LR + ALA L 
Sbjct: 266 VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	621
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	100.0
3f8t_A	506	Predicted ATPase involved in replication control,	100.0
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	100.0
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	100.0
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.9
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.87
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.86
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.7
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.58
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.56
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.51
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.49
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.49
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.48
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.47
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.4
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.39
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.37
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.35
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.35
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.3
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.28
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.27
3pvs_A	447	Replication-associated recombination protein A; ma	99.27
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.24
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.21
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.21
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.2
3co5_A	143	Putative two-component system transcriptional RES	99.2
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.2
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.19
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.19
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.19
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.19
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.19
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.17
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.17
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.16
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.15
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.14
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.14
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.12
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.12
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.12
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.12
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.11
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.1
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.09
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.0
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.99
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.98
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.98
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.96
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.94
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.93
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.92
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.87
3bos_A	242	Putative DNA replication factor; P-loop containing	98.86
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.86
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.84
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.82
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.81
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.8
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.78
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.75
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.74
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.74
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.72
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.72
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.71
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.68
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.67
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.66
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.62
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.62
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.6
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.56
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.56
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.56
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.53
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.52
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.45
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.32
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.23
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.21
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.2
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.97
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.71
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.67
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.47
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.37
2qgz_A	308	Helicase loader, putative primosome component; str	97.25
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.64
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.78
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.64
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.59
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.36
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.36
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.22
1via_A	175	Shikimate kinase; structural genomics, transferase	95.21
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.11
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.11
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.97
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.96
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.85
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.64
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.61
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.59
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.59
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.55
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.47
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.47
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.44
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.43
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.35
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.35
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.33
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.27
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.27
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.25
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.23
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.16
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.13
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.09
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.02
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.98
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.96
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.88
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.76
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.75
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.71
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.7
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.67
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.62
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.58
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.51
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.4
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.35
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.33
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.28
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.09
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	92.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.7
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.64
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.64
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.62
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	92.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.57
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.56
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.55
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.55
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.54
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.5
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.45
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.45
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.39
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.39
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.39
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.38
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.37
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	92.37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.34
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.32
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.28
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.27
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	92.26
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.25
1g6h_A	257	High-affinity branched-chain amino acid transport	92.21
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.2
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.16
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.15
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	92.14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.13
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	92.07
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.05
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.05
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.05
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	92.03
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	92.02
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.01
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.98
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.96
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	91.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	91.92
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.9
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.89
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.88
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	91.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.86
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.81
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.75
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	91.74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.73
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	91.63
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	91.63
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	91.61
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.59
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.54
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.52
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.5
1sgw_A	214	Putative ABC transporter; structural genomics, P p	91.46
1nrj_B	218	SR-beta, signal recognition particle receptor beta	91.45
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.4
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.37
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.35
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	91.34
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.33
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	91.33
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.32
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	91.29
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	91.29
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.27
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	91.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.23
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	91.21
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.21
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	91.15
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.14
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.14
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.14
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.11
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.09
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	91.06
2ged_A	193	SR-beta, signal recognition particle receptor beta	91.05
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	91.02
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.02
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.01
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.01
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.0
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	90.94
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	90.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.92
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.91
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	90.91
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	90.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.86
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	90.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	90.8
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.79
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	90.78
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.73
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	90.71
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	90.7
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	90.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.66
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.66
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	90.66
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	90.65
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	90.63
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.62
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.61
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.59
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	90.52
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	90.49
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.46
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	90.44
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.43
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.43
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.42
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	90.38
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.36
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.36
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.35
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	90.34
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	90.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.28
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.24
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.21
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.16
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.16
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.06
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	89.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	89.88
2eyu_A	261	Twitching motility protein PILT; pilus retraction	89.84
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	89.83
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	89.83
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	89.82
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	89.81
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.73
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.69
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	89.68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	89.63
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	89.63
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	89.63
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	89.58
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.56
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.56
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	89.55
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	89.53
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	89.52
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	89.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	89.43
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	89.43
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	89.35
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	89.25
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	89.25
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	89.24
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	89.18
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.1
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.07
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	89.06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	89.05
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	89.03
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.0
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	88.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	88.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	88.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	88.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	88.82
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	88.76
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	88.75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.74
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	88.64
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	88.59
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	88.56
2ghi_A	260	Transport protein; multidrug resistance protein, M	88.44
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.4
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	88.28
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.27
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	88.2
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	88.09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	88.07
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	87.99
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	87.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	87.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	87.97
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	87.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	87.93
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	87.92
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	87.81
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	87.75
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	87.68
2fna_A	357	Conserved hypothetical protein; structural genomic	87.61
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	87.61
2ewv_A	372	Twitching motility protein PILT; pilus retraction	87.59
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	87.47
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	87.43
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	87.43
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	87.39
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	87.37
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	87.35
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	87.34
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	87.23
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	87.16
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	87.05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	86.96
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	86.94
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	86.88
1p9r_A	418	General secretion pathway protein E; bacterial typ	86.85
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	86.85
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	86.79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	86.78
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	86.7
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	86.66
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	86.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	86.65
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	86.57
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	86.51
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	86.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	86.47
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	86.46
3ice_A	422	Transcription termination factor RHO; transcriptio	86.4
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	86.25
2hf9_A	226	Probable hydrogenase nickel incorporation protein	86.16
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	86.14
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	86.07
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	85.94
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	85.78
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	85.77
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	85.59
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	85.5
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	85.47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	85.59
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	85.26
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	85.2
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	85.12
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	85.08
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	85.02
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	84.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	84.88
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	84.86
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	84.83
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	84.79
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	84.71
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	84.68
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	84.45
2og2_A	359	Putative signal recognition particle receptor; nuc	84.37
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	84.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	84.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	84.26
2z43_A	324	DNA repair and recombination protein RADA; archaea	84.13
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	84.04
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	83.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	83.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	83.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	83.69
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	83.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	83.53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	83.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	83.27
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	83.08
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	82.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	82.94
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	82.92
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	82.74
3io5_A	333	Recombination and repair protein; storage dimer, i	82.73
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	82.6
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	82.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	82.35
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	81.99
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	81.99
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	81.96
3rc3_A	677	ATP-dependent RNA helicase SUPV3L1, mitochondrial;	81.91
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	81.85
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	81.84
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	81.84
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	81.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	81.75
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	81.75
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	81.74
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	81.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	81.68
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	81.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	81.43
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	81.33
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	81.23
1u94_A	356	RECA protein, recombinase A; homologous recombinat	81.22
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	81.17
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	81.1
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	81.01
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	80.95
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	80.91
3h1t_A	590	Type I site-specific restriction-modification syst	80.9
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	80.76
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	80.64
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	80.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	80.42
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	80.41
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	80.15
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	80.14
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	80.06

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.4e-82  Score=713.93  Aligned_cols=484  Identities=37%  Similarity=0.605  Sum_probs=429.5

Q ss_pred             hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213         86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK  165 (621)
Q Consensus        86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~  165 (621)
                      .+.+++||++|.+.    ++.++|+++|++|+..++.+|+||++||.+|+++||++|+++|.+++++|++|+.++++...
T Consensus         5 ~~~f~~Fl~~~~~~----~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~   80 (595)
T 3f9v_A            5 RDVFIEFLTTFKGN----NNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD   80 (595)
T ss_dssp             HHHHHHHHHHCCTT----TTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhcc----CCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhc
Confidence            35678999999753    24788999999999999999999999999999999999999999999999999998764211


Q ss_pred             ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213        166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT  245 (621)
Q Consensus       166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~  245 (621)
                                                 +        .+.. ..++++|+|.+++  ...++|+|++.++||||+|+|+|+
T Consensus        81 ---------------------------~--------~~~~-~~~~~~v~~~~~~--~~~~~r~l~~~~i~~lv~v~G~V~  122 (595)
T 3f9v_A           81 ---------------------------P--------TYQR-DIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILV  122 (595)
T ss_dssp             ---------------------------G--------GGTT-TCCCCCCCEECCS--CEECGGGCCGGGTTCCEEEEEEEE
T ss_pred             ---------------------------h--------hhhh-ccceEEEEEeCCC--CCCChhhcchhhCCcEEEEEEEEE
Confidence                                       0        0000 1235778888877  568999999999999999999999


Q ss_pred             EecccceeeeEEEEEecC--CCCeeeec---ccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCC
Q psy11213        246 RSTEVKPLMTVATYTCDM--CGAETYQP---ISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQ  320 (621)
Q Consensus       246 r~s~v~p~~~~~~f~C~~--Cg~~~~~~---~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~  320 (621)
                      |+|.|+|++.+++|.|.+  ||+.++.+   ..+..+.+|..||+  |++   .|+|.++.+.|.|+|||+|+|||.|+.
T Consensus       123 r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~--C~~---~~~~~~~~~~s~~~d~Q~i~iQe~~~~  197 (595)
T 3f9v_A          123 KVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPK--CGK---PGQFRLIPEKTKLIDWQKAVIQERPEE  197 (595)
T ss_dssp             EECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTT--TCC---CSEEECCSTTCEEEEEEEEEEECCTTT
T ss_pred             EecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCC--CCC---CCceEEeccCceeeeeEEEEEEecccc
Confidence            999999999999999999  99987766   34567889999986  874   458999999999999999999999999


Q ss_pred             CCCCCcccceeeecccccccccccCceEEEeeeeeccccCC--------ceeeec-------------------------
Q psy11213        321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTG--------FRQVTQ-------------------------  367 (621)
Q Consensus       321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~--------~~~~~~-------------------------  367 (621)
                      +|.|++||+++|+|++|||++++|||+|.|+||+.+....+        |.....                         
T Consensus       198 ~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~  277 (595)
T 3f9v_A          198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIK  277 (595)
T ss_dssp             SCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHH
T ss_pred             CCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccccCCCCHHHHHHHH
Confidence            99999999999999999999999999999999997554311        110000                         


Q ss_pred             -----------------------------------Cc-------------ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        368 -----------------------------------GN-------------INICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       368 -----------------------------------g~-------------i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                                                         |+             +||||+||||||||+||+++++.+++..++
T Consensus       278 ~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          278 DLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             TTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             HHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence                                               44             399999999999999999999999999999


Q ss_pred             cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceE
Q psy11213        400 TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSI  479 (621)
Q Consensus       400 ~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~v  479 (621)
                      .+.+.+..|++++...+..+|.+..++|++.+|++|||||||||+|+++.+++||++||++++++.++|....++++++|
T Consensus       358 ~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v  437 (595)
T 3f9v_A          358 TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV  437 (595)
T ss_dssp             CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred             CCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence            99888899999999988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHH
Q psy11213        480 LAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYID  559 (621)
Q Consensus       480 iAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~  559 (621)
                      |||+||.+|+|++.+++.+|+.|++||+||||+++++.|.|+.+ +..|++|++..|...    ...+.++.+.|++|+.
T Consensus       438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~----~~~~~l~~~~l~~~i~  512 (595)
T 3f9v_A          438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK----STKNIIDIDTLRKYIA  512 (595)
T ss_dssp             EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC----SSSSTTCCTTTHHHHH
T ss_pred             EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc----ccccCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 999999999877542    3456789999999999


Q ss_pred             HHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCC-CCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        560 LCKGK-NPTVPSSLTEHIVKAYTELRKVARNSR-DMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       560 ~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~-~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ||++. .|.+++++.+.|.++|.++|+...... ...++|+|++++++|+|+|+|++++++.|+
T Consensus       513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~  576 (595)
T 3f9v_A          513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVT  576 (595)
T ss_dssp             HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSS
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            99988 999999999999999999998755432 246799999999999999999999999986

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=100.00  E-value=4.2e-58  Score=491.86  Aligned_cols=295  Identities=26%  Similarity=0.367  Sum_probs=251.1

Q ss_pred             ccCcccchhhhhhhhcccCCCCCCCcccceeeeccccccc------ccccCceEEEeeeeeccc--cCCcee--------
Q psy11213        301 TRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTR------QVVPGDHVSVSGIFLPLL--RTGFRQ--------  364 (621)
Q Consensus       301 ~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~------~~~~G~~v~v~Gil~~~~--~~~~~~--------  364 (621)
                      .+++.|.|||+|||||.|+++|.|++||+++|+|++|||+      +|+|||+|.|+||+.+..  .++...        
T Consensus       108 ~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~~l~a~~i~~~~~~~~~~  187 (506)
T 3f8t_A          108 VERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVH  187 (506)
T ss_dssp             CSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETTEEEEEEEEEECSSCCCC
T ss_pred             HhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEeEEEEEEEEEcCccccCC
Confidence            4567789999999999999999999999999999999999      999999999999987531  000000        


Q ss_pred             ee-------------c---------------------------Cc-------ccEEEeCCCCcchhHHHHHH-Hhhcccc
Q psy11213        365 VT-------------Q---------------------------GN-------INICLMGDPGVAKSQLLSYI-ERLARRS  396 (621)
Q Consensus       365 ~~-------------~---------------------------g~-------i~vLL~G~PGtGKS~ll~~i-a~~~pr~  396 (621)
                      +.             .                           |+       +||||+|+||| ||+|++++ ++++||.
T Consensus       188 ~t~ed~~~i~~l~~~~~~~~l~~sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~  266 (506)
T 3f8t_A          188 PDPAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRG  266 (506)
T ss_dssp             CCHHHHHHHHHHHHSCHHHHHHHHHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCe
Confidence            00             0                           44       49999999999 99999999 9999999


Q ss_pred             EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc
Q psy11213        397 QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR  476 (621)
Q Consensus       397 ~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar  476 (621)
                      +|++|.+++.+||+++ .+++ +| |.+++|++++||+|+||||||++|+++.+.+|||+||+|++++.  |+  ++|++
T Consensus       267 ~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lpar  339 (506)
T 3f8t_A          267 VYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNAR  339 (506)
T ss_dssp             EEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECC
T ss_pred             EEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCC
Confidence            9999999988999999 7887 88 99999999999999999999999999999999999999999996  77  99999


Q ss_pred             ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHH
Q psy11213        477 VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRR  556 (621)
Q Consensus       477 ~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~  556 (621)
                      |+||||+||.+ +||++++. +|++||+++||||||++++.|+|+.+.|.+                ...+.++.+.|++
T Consensus       340 f~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e----------------~~~~~ls~e~L~~  401 (506)
T 3f8t_A          340 CAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE----------------QDTEVPSYTLLRR  401 (506)
T ss_dssp             CEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC------------------------------CCHHHHHH
T ss_pred             eEEEEEeCccc-ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc----------------ccCCCCCHHHHHH
Confidence            99999999998 99999988 999999999999999999999999998842                1235789999999


Q ss_pred             HHHHHH-cC-CCCCCHHHHHHHHHHHHHHHHHhhc----CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        557 YIDLCK-GK-NPTVPSSLTEHIVKAYTELRKVARN----SRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       557 ~i~~ar-~~-~p~ls~~a~~~l~~~y~~lR~~~~~----~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      |+.||| +. +|.+++++.++|.++|..+|+....    .....++|+|++++|+|+|+|+|+|++|+.|+
T Consensus       402 yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~  472 (506)
T 3f8t_A          402 YLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE  472 (506)
T ss_dssp             HHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            999999 55 9999999999999999999984221    11356799999999999999999999999985

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.1e-43  Score=360.88  Aligned_cols=227  Identities=26%  Similarity=0.452  Sum_probs=200.3

Q ss_pred             hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213         86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK  165 (621)
Q Consensus        86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~  165 (621)
                      .+.+.+||++|.+.    .+.++|+++|++|++.++.+|+||++||.+|+++||++|+++|.+++++|++|+.++++...
T Consensus        11 ~~~f~~Fl~~f~~~----~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~   86 (268)
T 2vl6_A           11 RDVFIEFLTTFKGN----NNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD   86 (268)
T ss_dssp             HHHHHHHHHHCCCS----SSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhhcc----cCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence            35678999999742    24678999999999999999999999999999999999999999999999999999875431


Q ss_pred             ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213        166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT  245 (621)
Q Consensus       166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~  245 (621)
                      ..                                   +. ...++++|+|.+++  ...++|+|+++|+||||+|+|+|+
T Consensus        87 ~~-----------------------------------~~-~~~~~~~vr~~~~~--~~~~iR~l~~~~igkLV~v~GiV~  128 (268)
T 2vl6_A           87 PT-----------------------------------YQ-RDIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILV  128 (268)
T ss_dssp             GG-----------------------------------GT-TTCSCCCEEEECCS--CEECGGGCCGGGTTSEEEEEEEEE
T ss_pred             ch-----------------------------------hh-ccCccEEEEEECCC--CCCccccCChhHCCCeEEEEEEEE
Confidence            10                                   00 01246789999887  568999999999999999999999


Q ss_pred             EecccceeeeEEEEEe--cCCCCeeeec---ccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCC
Q psy11213        246 RSTEVKPLMTVATYTC--DMCGAETYQP---ISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQ  320 (621)
Q Consensus       246 r~s~v~p~~~~~~f~C--~~Cg~~~~~~---~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~  320 (621)
                      |+|.|+|++.+++|.|  .+||+.+.+.   +..+.+++|..||.  |++   .|+|.++++.|+|+|||+|||||+|+.
T Consensus       129 r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~--C~~---~~~~~l~~~~s~f~D~Q~ikiQE~pe~  203 (268)
T 2vl6_A          129 KVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPK--CGK---PGQFRLIPEKTKLIDWQKAVIQERPEE  203 (268)
T ss_dssp             EECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTT--TCC---BCEEEECGGGCEEEEEEEEEEECCGGG
T ss_pred             EcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCC--CCC---CCCEEEecCccEEEeeEEEEEEeCCCC
Confidence            9999999999999999  9999988777   56678899999995  984   468999999999999999999999999


Q ss_pred             CCCCCcccceeeecccccccccccCceEEEeeeeecccc
Q psy11213        321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR  359 (621)
Q Consensus       321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~  359 (621)
                      +|+|++||+++|+|++||||+++|||+|.|+||+.+...
T Consensus       204 vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~  242 (268)
T 2vl6_A          204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQD  242 (268)
T ss_dssp             SCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred             CCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence            999999999999999999999999999999999986543

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11

Probab=100.00  E-value=1.6e-42  Score=355.96  Aligned_cols=210  Identities=25%  Similarity=0.413  Sum_probs=189.3

Q ss_pred             hhHHHHHHhcccccccCcchhchHHHHHHHH--HcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCC
Q psy11213         87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLA--HREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDY  164 (621)
Q Consensus        87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~--~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~  164 (621)
                      +.+.+||++|           +|+++|++|+  ..++++|+||++||.+|+++||++|.++|.+++++|++|++++.| +
T Consensus        16 ~~f~~Fl~~~-----------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~-~   83 (279)
T 1ltl_A           16 TKFEEFFSLQ-----------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDR-L   83 (279)
T ss_dssp             HHHHHHTTSH-----------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCT-T
T ss_pred             HHHHHHhccc-----------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhcc-c
Confidence            5566776655           5999999999  778999999999999999999999999999999999999987643 1


Q ss_pred             cccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEE
Q psy11213        165 KSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVV  244 (621)
Q Consensus       165 ~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV  244 (621)
                      .                                       ..+  +++|+|.+++  ...++|+|+++|+||||+|+|+|
T Consensus        84 ~---------------------------------------~~~--~~~vr~~~~~--~~~~iR~L~~~~igkLV~v~GiV  120 (279)
T 1ltl_A           84 R---------------------------------------KNV--DLNIRFSGIS--NVIPLRELRSKFIGKFVAVDGIV  120 (279)
T ss_dssp             C---------------------------------------CCC--CCEEEEECCS--CBCCGGGCCGGGTTSEEEEEEEE
T ss_pred             c---------------------------------------CCe--eEEEEEECCC--CCCCcccCChhhCCCEEEEEEEE
Confidence            1                                       011  4789998887  56899999999999999999999


Q ss_pred             EEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCC
Q psy11213        245 TRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVG  324 (621)
Q Consensus       245 ~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g  324 (621)
                      +|+|.|+|++.+++|.|.+||+.+++++..+.+++|..||+  |++   .| |.++.+.|+|+|||+|||||+|+.+|.|
T Consensus       121 ~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~--C~~---~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G  194 (279)
T 1ltl_A          121 RKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSE--CGG---RS-FRLLQDESEFLDTQTLKLQEPLENLSGG  194 (279)
T ss_dssp             EEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTT--TCC---CC-EEECGGGCEEEEEEEEEEECCSTTCCSS
T ss_pred             EEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCC--CCC---CC-cEEeccccEEEeeEEEEEecCcccCCCC
Confidence            99999999999999999999999888887778999999996  984   34 9999999999999999999999999999


Q ss_pred             CcccceeeecccccccccccCceEEEeeeeecc
Q psy11213        325 NIPRGITVLCRGENTRQVVPGDHVSVSGIFLPL  357 (621)
Q Consensus       325 ~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~  357 (621)
                      ++||+++|+|++||||+++|||+|.|+||+.+.
T Consensus       195 ~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~  227 (279)
T 1ltl_A          195 EQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTV  227 (279)
T ss_dssp             CCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEE
T ss_pred             CCCeEEEEEEcccccCccCCCCEEEEEEEEEEe
Confidence            999999999999999999999999999999754

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.90  E-value=9.8e-23  Score=213.94  Aligned_cols=231  Identities=19%  Similarity=0.219  Sum_probs=178.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec--CCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      |+||+||||||||+|++++++.++...+..  ........+++....+...|.+.+.+|.+.   +||+||||+++++++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~---~~vl~iDEi~~~~~~  124 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVF---SNFILADEVNRSPAK  124 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTC---SSEEEEETGGGSCHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCccc---ccEEEEEccccCCHH
Confidence            999999999999999999999887654332  222222346666555555677778888774   799999999999999


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHH
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL  528 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i  528 (621)
                      .++.|+++|+++.+++  .|....++.++.++||+||..        ..+...++++|+|||++ .+..+.|+.+...+|
T Consensus       125 ~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~--------~~~~~~l~~~l~~Rf~~-~i~i~~p~~~~~~~i  193 (331)
T 2r44_A          125 VQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVE--------QEGTYPLPEAQVDRFMM-KIHLTYLDKESELEV  193 (331)
T ss_dssp             HHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTC--------CSCCCCCCHHHHTTSSE-EEECCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCc--------ccCcccCCHHHHhheeE-EEEcCCCCHHHHHHH
Confidence            9999999999999988  688889999999999999974        12234699999999974 456678899888888


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCCccCHHHHH
Q psy11213        529 AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSR------DMSYTSARNLL  602 (621)
Q Consensus       529 a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~------~~~~~t~R~le  602 (621)
                      .++......    .......++.+.+......++  +..+++++.+++.+.+..+|.......      ....+|+|.++
T Consensus       194 l~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~  267 (331)
T 2r44_A          194 MRRVSNMNF----NYQVQKIVSKNDVLEIRNEIN--KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAI  267 (331)
T ss_dssp             HHHHHCTTC----CCCCCCCSCHHHHHHHHHHHH--TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHH
T ss_pred             HHhccccCc----chhccccCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHH
Confidence            887764321    112245677777777766554  478999999999999988886532100      12346899999


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy11213        603 AILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       603 slirla~A~Akl~lr~~V~  621 (621)
                      +++++|+|+|.+++++.|+
T Consensus       268 ~ll~~a~a~A~l~g~~~v~  286 (331)
T 2r44_A          268 NLNRVAKAMAFFNNRDYVL  286 (331)
T ss_dssp             HHHHHHHHHHHHTTCSBCC
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.87  E-value=1e-21  Score=216.58  Aligned_cols=247  Identities=19%  Similarity=0.194  Sum_probs=168.9

Q ss_pred             ccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecC
Q psy11213        341 QVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDP  417 (621)
Q Consensus       341 ~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~  417 (621)
                      ....|++-.+..++.++..++         |+||+||||||||+|++++++.+++.   .+......+...+++......
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~   92 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQA   92 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC---
T ss_pred             hhhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHH
Confidence            344566655555555555555         99999999999999999999988652   122222212223443211110


Q ss_pred             --ccccee-eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCC
Q psy11213        418 --ITNEMV-LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKR  494 (621)
Q Consensus       418 --~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~  494 (621)
                        ..|.+. ...|.+  +..+|+|||||++++++.++.|+++|+++.+++  .|....++.++ +|+|+|+...      
T Consensus        93 ~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe------  161 (500)
T 3nbx_X           93 LKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE------  161 (500)
T ss_dssp             -------CBCCTTSG--GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC------
T ss_pred             HhhchhHHhhhccCC--CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC------
Confidence              123332 333432  346799999999999999999999999999988  68889999986 5667786421      


Q ss_pred             CcccccCCCHhHhccccEEEEecCCCCh-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHH
Q psy11213        495 SIEQNIQLPAALLSRFDLLWLIQDKPDR-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLT  573 (621)
Q Consensus       495 ~~~~~~~L~~aLlsRFDli~~~~d~~d~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~  573 (621)
                          ...+.+++++|| .+.+..++|+. +....|.+....   ....+....+.++.+.+.++...++.  +.+++++.
T Consensus       162 ----~~~~~~aLldRF-~~~i~v~~p~~~ee~~~IL~~~~~---~~~~~~~~~~~~~~e~l~~~~~~~~~--v~v~d~v~  231 (500)
T 3nbx_X          162 ----ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQD---ENDNPVPDALQVTDEEYERWQKEIGE--ITLPDHVF  231 (500)
T ss_dssp             ----TTCTTHHHHTTC-CEEEECCSCCCHHHHHHHHTCCCC---TTSCCSCTTTSBCHHHHHHHHHHHTT--CBCCHHHH
T ss_pred             ----ccccHHHHHHHH-HHHHHHHHhhhhhhHHHHHhcccc---cCCCCCCccceecHHHHHHHHhcCCc--ccCchHHH
Confidence                123568999999 46666788877 444555542211   11112223567899999999888765  78899999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +++.+.+..+|...    ....+|+|++++++++|+|+|.+++|+.|+
T Consensus       232 e~i~~l~~~lr~~r----~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt  275 (500)
T 3nbx_X          232 ELIFMLRQQLDKLP----DAPYVSDRRWKKAIRLLQASAFFSGRSAVA  275 (500)
T ss_dssp             HHHHHHHHHHHHCS----SSCCCCHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred             HHHHHHHHHhhcCC----CCCccchhHHHHHHHHHHHHHhhcCCcccc
Confidence            99988877776542    234579999999999999999999999885

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.86  E-value=9.3e-22  Score=207.34  Aligned_cols=228  Identities=21%  Similarity=0.248  Sum_probs=167.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC---------------------------------CCccccceEEEeecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---------------------------------GSSGVGLTAAVMKDP  417 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---------------------------------~~s~~gLta~~~~~~  417 (621)
                      |+||+||||||||++++++++.+++..+..+.                                 +.+..++.+......
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  126 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIER  126 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhh
Confidence            89999999999999999999998864433221                                 111111222111110


Q ss_pred             --cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCC
Q psy11213        418 --ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRS  495 (621)
Q Consensus       418 --~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~  495 (621)
                        ..+.+.+.+|.+..|++|++||||+++++++.+..|+++|+++...+...|.....+.++.+|||+||..+       
T Consensus       127 ~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~-------  199 (350)
T 1g8p_A          127 AISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-------  199 (350)
T ss_dssp             HHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-------
T ss_pred             hhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-------
Confidence              12345677888889999999999999999999999999999999999889999999999999999999643       


Q ss_pred             cccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHH
Q psy11213        496 IEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLT  573 (621)
Q Consensus       496 ~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~  573 (621)
                           .++++|++||++.+.+...++.+.+..|.++.+....... ........+...+++++.+++..  ...+++++.
T Consensus       200 -----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~  273 (350)
T 1g8p_A          200 -----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK-AFLEEWRPKDMDIRNQILEARERLPKVEAPNTAL  273 (350)
T ss_dssp             -----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHH
T ss_pred             -----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch-hhccccccchHHHHHHHHHHHHhCCCCCCCHHHH
Confidence                 4889999999976666665577777788887654321000 00000112345677888777654  568999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ++|.+++...+.          -++|.++++++.|.++|.+++++.|+
T Consensus       274 ~~l~~~~~~~~~----------~~~R~~~~ll~~a~~~A~~~~~~~v~  311 (350)
T 1g8p_A          274 YDCAALCIALGS----------DGLRGELTLLRSARALAALEGATAVG  311 (350)
T ss_dssp             HHHHHHHHHSSS----------CSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred             HHHHHHHHHhCC----------CCccHHHHHHHHHHHHHHHcCCCcCC
Confidence            999987543210          16899999999999999999998775

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.70  E-value=2.2e-17  Score=187.12  Aligned_cols=155  Identities=19%  Similarity=0.199  Sum_probs=112.7

Q ss_pred             eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe----------EEecCCcceEEeecCCCCCCCCCC
Q psy11213        424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI----------MTRLNARVSILAAANPAYGRYNPK  493 (621)
Q Consensus       424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi----------~~~l~ar~~viAa~Np~~g~~~~~  493 (621)
                      +.+|.+..|++|++||||++++++..+..|+++|+++.+.+.  |.          ...+|.++.||+|+|+...     
T Consensus       192 i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~-----  264 (604)
T 3k1j_A          192 VEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV-----  264 (604)
T ss_dssp             EECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH-----
T ss_pred             ccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH-----
Confidence            588999999999999999999999999999999999998874  33          4456788999999998511     


Q ss_pred             CCcccccCCCHhHhccccE--EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH----HHc--CC
Q psy11213        494 RSIEQNIQLPAALLSRFDL--LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL----CKG--KN  565 (621)
Q Consensus       494 ~~~~~~~~L~~aLlsRFDl--i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~----ar~--~~  565 (621)
                            ..++++|++||++  +.+-.+...+                          ...+.++.|+.+    ++.  ..
T Consensus       265 ------~~l~~~l~~R~~v~~i~i~l~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~~  312 (604)
T 3k1j_A          265 ------DKMHPALRSRIRGYGYEVYMRTTMP--------------------------DTIENRRKLVQFVAQEVKRDGKI  312 (604)
T ss_dssp             ------HHSCHHHHHHHHHHSEEEECCSEEE--------------------------CCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ------hhcCHHHHHHhhccceEeecccccc--------------------------CCHHHHHHHHHHHHHHHhhccCc
Confidence                  1489999999973  2222221111                          112223333322    221  24


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        566 PTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       566 p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      +.+++++.+.|.++|..+  .  ......++++|++++++|.|.++|++++++.|+
T Consensus       313 ~~ls~eAl~~Li~~~~r~--~--g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~  364 (604)
T 3k1j_A          313 PHFTKEAVEEIVREAQKR--A--GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVE  364 (604)
T ss_dssp             CCBBHHHHHHHHHHHHHT--T--CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             ccCCHHHHHHHHHHHhhh--h--ccccccccCHHHHHHHHHHHHHHHHhcCccccc
Confidence            789999999999987532  1  111234468999999999999999999988775

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.58  E-value=4.2e-15  Score=154.25  Aligned_cols=201  Identities=14%  Similarity=0.179  Sum_probs=127.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||+|+||||||++++++++.+++.     ...++..+..   ..|.+. .+...+|......|.+..|++|++|||
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~-~~g~~tg~~~~~~g~~~~a~~g~L~LD  103 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLD  103 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC-CSSCCC---CCCCCHHHHHTTSEEEEE
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc-cccccCchhhhhcCHHHhcCCCEEEEe
Confidence            4599999999999999999999987643     1222222110   011111 111123444456788888999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.++.+.+..|+.+|+++.+.  +.|.....+.++.||+|+|+...      .....-.+.+.|++||+.+.+..+..
T Consensus       104 Ei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~------~~v~~g~fr~~L~~Rl~~~~i~lPpL  175 (304)
T 1ojl_A          104 EIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLA------EEVSAGRFRQDLYYRLNVVAIEMPSL  175 (304)
T ss_dssp             SCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHH------HHHHHTSSCHHHHHHHSSEEEECCCS
T ss_pred             ccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHH------HHHHhCCcHHHHHhhcCeeEEeccCH
Confidence            99999999999999999998763  46777777888999999998510      01122257899999997555555444


Q ss_pred             C--hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        521 D--RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       521 d--~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      .  .+.-..++++.+..                     +........+.+++++.+.|..+             .++-++
T Consensus       176 ~eR~edi~~l~~~~l~~---------------------~~~~~~~~~~~~s~~a~~~L~~~-------------~wpGnv  221 (304)
T 1ojl_A          176 RQRREDIPLLADHFLRR---------------------FAERNRKVVKGFTPQAMDLLIHY-------------DWPGNI  221 (304)
T ss_dssp             GGGGGGHHHHHHHHHHH---------------------HHHHTTCCCCCBCHHHHHHHHHC-------------CCSSHH
T ss_pred             HHhHhhHHHHHHHHHHH---------------------HHHHhccCccCCCHHHHHHHHcC-------------CCCCCH
Confidence            3  23333455554321                     11111111356788877777653             234467


Q ss_pred             HHHHHHHHHHHHHH
Q psy11213        599 RNLLAILRLSTALA  612 (621)
Q Consensus       599 R~leslirla~A~A  612 (621)
                      |+|+++++-+.+.|
T Consensus       222 ReL~~~l~~~~~~~  235 (304)
T 1ojl_A          222 RELENAIERAVVLL  235 (304)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            88887777665544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.56  E-value=1.1e-14  Score=147.57  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=122.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc----EEe-cCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS----QYT-TGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~-~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDE  441 (621)
                      .++||+|+||||||++++++++.+++.    ++. ++.....   ..+.+. .....+|......|.+..|++|++||||
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDE  108 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDE  108 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCC-C---------CCCCHHHHTTTSEEEEES
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCC-cccccccccccccchhhhcCCcEEEEec
Confidence            499999999999999999999987642    122 1111110   001110 0011122223356777778999999999


Q ss_pred             CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      ++.++.+.+..|+.+|+++.+  .+.|.....+.++.+|+|+|+...      .....-.+.++|++||+.+.+..+...
T Consensus       109 i~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~------~~~~~~~~~~~L~~Rl~~~~i~lp~L~  180 (265)
T 2bjv_A          109 LATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLP------AMVNEGTFRADLLDALAFDVVQLPPLR  180 (265)
T ss_dssp             GGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHH------HHHHHTSSCHHHHHHHCSEEEECCCGG
T ss_pred             hHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHH------HHHHcCCccHHHHHhhcCcEEeCCChh
Confidence            999999999999999999875  345666666778999999998511      011122578999999975444444333


Q ss_pred             h--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-C---CCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213        522 R--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-N---PTVPSSLTEHIVKAYTELRKVARNSRDMSY  595 (621)
Q Consensus       522 ~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~---p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~  595 (621)
                      .  +.-..++++.+.                     ++   +++. .   +.+++++.+.|..+             .++
T Consensus       181 ~R~~di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~~a~~~L~~~-------------~~~  223 (265)
T 2bjv_A          181 ERESDIMLMAEYFAI---------------------QM---CREIKLPLFPGFTERARETLLNY-------------RWP  223 (265)
T ss_dssp             GCHHHHHHHHHHHHH---------------------HH---HHHTTCSSCCCBCHHHHHHHHHS-------------CCT
T ss_pred             hhhHHHHHHHHHHHH---------------------HH---HHHhCCCcccCcCHHHHHHHHhC-------------CCC
Confidence            2  222234444322                     21   2222 1   47899888877643             234


Q ss_pred             cCHHHHHHHHHHHHHHH
Q psy11213        596 TSARNLLAILRLSTALA  612 (621)
Q Consensus       596 ~t~R~leslirla~A~A  612 (621)
                      -++|+|.++++.+-+.|
T Consensus       224 gn~reL~~~l~~~~~~~  240 (265)
T 2bjv_A          224 GNIRELKNVVERSVYRH  240 (265)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            56899999988776655

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.51  E-value=3.4e-14  Score=146.49  Aligned_cols=209  Identities=19%  Similarity=0.236  Sum_probs=128.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccceeec-CCCeeEecCCCCCCh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA-DQGICCIDEFDKLPD  447 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA-d~gi~~IDEidk~~~  447 (621)
                      .++||+||||||||++++++++.+....+.. .......|..+.........-+...+|.+..+ .++|++|||++++.+
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~  130 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK  130 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence            4899999999999999999999876544321 11111111111000000000001113344443 479999999999987


Q ss_pred             hh------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        448 AD------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       448 ~~------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      +.            ++.|+.+||.+.+... .|  ..-+.++.+|+|+|+...         ....++++|++||+ ..+
T Consensus       131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~-~~--~~~~~~~~~i~~~~~~~~---------~~~~l~~~l~~R~~-~~i  197 (310)
T 1ofh_A          131 KGEYSGADVSREGVQRDLLPLVEGSTVSTK-HG--MVKTDHILFIASGAFQVA---------RPSDLIPELQGRLP-IRV  197 (310)
T ss_dssp             CSSCCSSHHHHHHHHHHHHHHHHCCEEEET-TE--EEECTTCEEEEEECCSSS---------CGGGSCHHHHHTCC-EEE
T ss_pred             cccccccchhHHHHHHHHHHHhcCCeEecc-cc--cccCCcEEEEEcCCcccC---------CcccCCHHHHhhCC-ceE
Confidence            76            8899999998876652 33  223456889999875311         11268899999999 445


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11213        516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDM  593 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~  593 (621)
                      ..+.++.++...++++.+.                 ..++++...++..  .+.+++++.++|.++....+....     
T Consensus       198 ~~~~~~~~~~~~il~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~-----  255 (310)
T 1ofh_A          198 ELTALSAADFERILTEPHA-----------------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE-----  255 (310)
T ss_dssp             ECCCCCHHHHHHHHHSSTT-----------------CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC-----
T ss_pred             EcCCcCHHHHHHHHHhhHH-----------------HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc-----
Confidence            6677777766666653210                 2344555544433  457899999999987654433211     


Q ss_pred             CccCHHHHHHHHHHHHHHHHh
Q psy11213        594 SYTSARNLLAILRLSTALARL  614 (621)
Q Consensus       594 ~~~t~R~leslirla~A~Akl  614 (621)
                       ..++|++..+++-+-+.+.+
T Consensus       256 -~g~~R~l~~~l~~~~~~~~~  275 (310)
T 1ofh_A          256 -NIGARRLHTVMERLMDKISF  275 (310)
T ss_dssp             -CCTTHHHHHHHHHHSHHHHH
T ss_pred             -ccCcHHHHHHHHHHHHhhhc
Confidence             13689998888876655443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.49  E-value=1e-13  Score=145.35  Aligned_cols=135  Identities=20%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      .|+||+|+||||||++++++++.+....+.... ....            .+.+  ....--.+++|++||||++.++++
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~vl~lDEi~~l~~~  121 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK------------SGDL--AAILTNLSEGDILFIDEIHRLSPA  121 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS------------HHHH--HHHHHTCCTTCEEEEETGGGCCHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc------------hhHH--HHHHHhccCCCEEEEechhhcCHH
Confidence            389999999999999999999987554332111 1000            1111  001111467899999999999999


Q ss_pred             hhhhhHhhhcceEEEEecC------CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCCh
Q psy11213        449 DRTAIHEVMEQQTISIAKA------GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDR  522 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~------gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~  522 (621)
                      .+..|+.+|+++.+.+..+      .+...+| ++.+|+|+|...             .++++|++|||.. +..+.++.
T Consensus       122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-------------~l~~~L~~R~~~~-i~l~~~~~  186 (338)
T 3pfi_A          122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-------------MLSNPLRDRFGMQ-FRLEFYKD  186 (338)
T ss_dssp             HHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG-------------GSCHHHHTTCSEE-EECCCCCH
T ss_pred             HHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc-------------ccCHHHHhhcCEE-eeCCCcCH
Confidence            9999999999887654211      1222334 589999999852             4889999999855 45566676


Q ss_pred             HHHHHHHHHHH
Q psy11213        523 DNDLKLAQHIT  533 (621)
Q Consensus       523 ~~d~~ia~~il  533 (621)
                      ++...+.++..
T Consensus       187 ~e~~~il~~~~  197 (338)
T 3pfi_A          187 SELALILQKAA  197 (338)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.49  E-value=5.7e-14  Score=149.87  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=114.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD  447 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~  447 (621)
                      ..|+||+||||||||++++++++.+....+.... ..+..|+.+........+.+....|.+..+.+||+||||++++..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~  151 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR  151 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence            3599999999999999999999998654433211 111122222111110111112233555667899999999999998


Q ss_pred             h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC--------------CCCCC-------C
Q psy11213        448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA--------------YGRYN-------P  492 (621)
Q Consensus       448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~--------------~g~~~-------~  492 (621)
                      .              .++.|+.+||.+.+.+...|.....+.++.+++|+|..              ..|+.       .
T Consensus       152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~  231 (376)
T 1um8_A          152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ  231 (376)
T ss_dssp             ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred             hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCc
Confidence            8              89999999999888776666666555555555555541              11111       0


Q ss_pred             CCC-------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHH
Q psy11213        493 KRS-------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRY  557 (621)
Q Consensus       493 ~~~-------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~  557 (621)
                      ...       ..        ....+.++|++|||.+ +.....+.+.-..++.+.++                 ..+++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~-i~~~~l~~~~l~~i~~~~~~-----------------~~~~~~  293 (376)
T 1um8_A          232 EKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVL-STLDSISLEAMVDILQKPKN-----------------ALIKQY  293 (376)
T ss_dssp             SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSSTT-----------------CHHHHH
T ss_pred             hhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCce-eeccCCCHHHHHHHHhhhHH-----------------HHHHHH
Confidence            000       00        0335889999999966 55556666655555542110                 123334


Q ss_pred             HHHHHc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHH
Q psy11213        558 IDLCKG--KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALAR  613 (621)
Q Consensus       558 i~~ar~--~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Ak  613 (621)
                      ....+.  ....+++++.++|.++...           ....+|.|.+++.-+-..+-
T Consensus       294 ~~~~~~~~~~~~~~~~a~~~l~~~~~~-----------~~~~~R~L~~~le~~~~~~~  340 (376)
T 1um8_A          294 QQLFKMDEVDLIFEEEAIKEIAQLALE-----------RKTGARGLRAIIEDFCLDIM  340 (376)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHHHH-----------TTCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHhhcCceEEECHHHHHHHHHHhcc-----------cccCcHHHHHHHHHHHHHHH
Confidence            333321  2456888998888875221           01246777777765554433

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.48  E-value=1.2e-13  Score=142.90  Aligned_cols=201  Identities=10%  Similarity=0.076  Sum_probs=121.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---EEe--cCCCCcc---ccceEEEeecCcccc--eeeeccceeecCCCeeEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---QYT--TGRGSSG---VGLTAAVMKDPITNE--MVLEGGALVLADQGICCID  440 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~--~g~~~s~---~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~ID  440 (621)
                      ++||+||||||||++++++++.+.+.   ++.  +......   ..+.+...  ...|.  ...-.+++..+.+|+++||
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~lD  126 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPP--GYVGYEEGGQLTEAVRRRPYSVILFD  126 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCT--TSTTTTTCCHHHHHHHHCSSEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCC--ccccccccchHHHHHHhCCCeEEEEe
Confidence            89999999999999999999986432   211  1111100   00111000  00010  0011123334567999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-------CCCCCCCCCcccc------cCCCHhHh
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-------YGRYNPKRSIEQN------IQLPAALL  507 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-------~g~~~~~~~~~~~------~~L~~aLl  507 (621)
                      |+++++++.++.|+.+|+++.+... .|....+. ++.+|+|+|+.       .+.......+.+.      -.++++|+
T Consensus       127 Ei~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  204 (311)
T 4fcw_A          127 AIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL  204 (311)
T ss_dssp             TGGGSCHHHHHHHHHHHHHSEEECT-TSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHH
T ss_pred             ChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999988753 34333332 46699999983       1111122222222      25899999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK--GKNPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar--~~~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      +|||.++.. .+++.+....|+++.+..                     +.....  ...+.+++++.+.|.++-     
T Consensus       205 ~R~~~~~~~-~p~~~~~~~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~-----  257 (311)
T 4fcw_A          205 NRLDEIVVF-RPLTKEQIRQIVEIQMSY---------------------LRARLAEKRISLELTEAAKDFLAERG-----  257 (311)
T ss_dssp             TTCSEEEEC-CCCCHHHHHHHHHHHTHH---------------------HHHHHHTTTCEEEECHHHHHHHHHHS-----
T ss_pred             hcCCeEEEe-CCCCHHHHHHHHHHHHHH---------------------HHHHHHhCCcEEEeCHHHHHHHHHhC-----
Confidence            999966655 557788778888776532                     111111  124678888888877630     


Q ss_pred             HhhcCCCCCccCHHHHHHHHHHH
Q psy11213        586 VARNSRDMSYTSARNLLAILRLS  608 (621)
Q Consensus       586 ~~~~~~~~~~~t~R~leslirla  608 (621)
                        .    ..+.++|+|..+++-+
T Consensus       258 --~----~~~gn~R~L~~~i~~~  274 (311)
T 4fcw_A          258 --Y----DPVFGARPLRRVIQRE  274 (311)
T ss_dssp             --C----BTTTBTTTHHHHHHHH
T ss_pred             --C----CccCCchhHHHHHHHH
Confidence              0    1134678777777643

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.47  E-value=9.1e-15  Score=155.33  Aligned_cols=218  Identities=16%  Similarity=0.198  Sum_probs=119.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      .|+||+||||||||++++++++.+....+..... ....++.+.......++.+...+|.+..+.+||+||||+|++...
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~  131 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK  131 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence            4999999999999999999999976554432211 011111111000000111112234445567899999999999877


Q ss_pred             --------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCC-------------------C
Q psy11213        449 --------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYN-------------------P  492 (621)
Q Consensus       449 --------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~-------------------~  492 (621)
                                    .++.|+.+|+...+.+...|....-..++.+|+|+|..   .|.|+                   .
T Consensus       132 ~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~  211 (363)
T 3hws_A          132 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGA  211 (363)
T ss_dssp             SSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------
T ss_pred             ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccc
Confidence                          89999999996555554333333333345566666651   11111                   0


Q ss_pred             CC----------Ccccc--------cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHH
Q psy11213        493 KR----------SIEQN--------IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLV  554 (621)
Q Consensus       493 ~~----------~~~~~--------~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~l  554 (621)
                      ..          .+.+.        ..+.++|++|||.+ +....++.+.-..|+...++                 ..+
T Consensus       212 ~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~-~~~~pl~~~~~~~I~~~~~~-----------------~l~  273 (363)
T 3hws_A          212 TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV-ATLNELSEEALIQILKEPKN-----------------ALT  273 (363)
T ss_dssp             ------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSSTT-----------------CHH
T ss_pred             cccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCee-eecCCCCHHHHHHHHHHHHH-----------------HHH
Confidence            00          00011        12899999999955 44567777777777664110                 134


Q ss_pred             HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213        555 RRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRL  616 (621)
Q Consensus       555 r~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~l  616 (621)
                      +++....+..  ...+++++.++|.+.-..           .+...|.|++++.-+-..+-.++
T Consensus       274 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~-----------~~~gaR~L~~~ie~~~~~~l~~~  326 (363)
T 3hws_A          274 KQYQALFNLEGVDLEFRDEALDAIAKKAMA-----------RKTGARGLRSIVEAALLDTMYDL  326 (363)
T ss_dssp             HHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----------TTCTTTTHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhcCceEEECHHHHHHHHHhhcC-----------CccCchHHHHHHHHHHHHHHHhc
Confidence            4454443332  456899999988864111           22457888888876555544443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.40  E-value=9e-13  Score=147.33  Aligned_cols=143  Identities=20%  Similarity=0.277  Sum_probs=85.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC--CccccceEEEeecCcccceeeeccc----eee--cCCCeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG--SSGVGLTAAVMKDPITNEMVLEGGA----LVL--ADQGICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~--~s~~gLta~~~~~~~~g~~~l~~Ga----lvl--Ad~gi~~IDEi  442 (621)
                      ++||+||||||||+|+++++..+++.......+  .....+.+...  ...|.   .+|.    +..  ..++|++|||+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~--~~ig~---~~~~~~~~~~~a~~~~~vl~lDEi  184 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR--TYVGA---MPGRIIQGMKKAGKLNPVFLLDEI  184 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------------CHHHHHHTTCSSSEEEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHH--HHhcc---CchHHHHHHHHhhccCCEEEEhhh
Confidence            899999999999999999999976544322111  11111111100  00010   1111    112  26789999999


Q ss_pred             CCCChhh----hhhhHhhhcceEE-EEecCCeEEecC-CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        443 DKLPDAD----RTAIHEVMEQQTI-SIAKAGIMTRLN-ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       443 dk~~~~~----~~~L~eame~q~i-si~k~gi~~~l~-ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      +++..+.    ++.|+++|+.... .+...+.....+ .++.+|+|+|+..             .|+++|++||+  ++.
T Consensus       185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------~l~~aL~~R~~--vi~  249 (543)
T 3m6a_A          185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-------------TIPGPLRDRME--IIN  249 (543)
T ss_dssp             SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-------------TSCHHHHHHEE--EEE
T ss_pred             hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-------------cCCHHHHhhcc--eee
Confidence            9999874    4899999975321 111122222222 5689999999973             68999999996  356


Q ss_pred             cCCCChHHHHHHHHHHH
Q psy11213        517 QDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il  533 (621)
                      .+.|+.+++..|+++.+
T Consensus       250 ~~~~~~~e~~~Il~~~l  266 (543)
T 3m6a_A          250 IAGYTEIEKLEIVKDHL  266 (543)
T ss_dssp             CCCCCHHHHHHHHHHTH
T ss_pred             eCCCCHHHHHHHHHHHH
Confidence            78888888888877543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.39  E-value=1.1e-12  Score=152.49  Aligned_cols=184  Identities=13%  Similarity=0.115  Sum_probs=117.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC--CCC---ccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG--RGS---SGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g--~~~---s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEid  443 (621)
                      |+||+||||||||++++++++.++...+...  ...   +...+.++..  ...|.  ...-.+++..+++||++|||++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~--g~~g~~~~~~l~~~~~~~~~~vl~lDEi~  567 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP--GYVGFDQGGLLTDAVIKHPHAVLLLDEIE  567 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS--CSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCC--CCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence            8999999999999999999999865433211  111   1111222110  00010  0001234445678999999999


Q ss_pred             CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCC-------CCCC---CCccccc--CCCHhHhcccc
Q psy11213        444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR-------YNPK---RSIEQNI--QLPAALLSRFD  511 (621)
Q Consensus       444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~-------~~~~---~~~~~~~--~L~~aLlsRFD  511 (621)
                      ++.++.++.|+.+|+++.++.. .|....+ .++.||+|+|+....       |...   ....+..  .++++|++|||
T Consensus       568 ~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~  645 (758)
T 1r6b_X          568 KAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD  645 (758)
T ss_dssp             GSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred             ccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC
Confidence            9999999999999999999875 4666666 678999999985311       1100   0011111  58999999999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKA  579 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~  579 (621)
                      .+ +..+.++.+....|+++.+...                  .+  .+..+. ...+++++.++|.++
T Consensus       646 ~~-i~~~~l~~~~~~~i~~~~l~~~------------------~~--~~~~~~~~~~~~~~a~~~l~~~  693 (758)
T 1r6b_X          646 NI-IWFDHLSTDVIHQVVDKFIVEL------------------QV--QLDQKGVSLEVSQEARNWLAEK  693 (758)
T ss_dssp             EE-EECCCCCHHHHHHHHHHHHHHH------------------HH--HHHHTTEEEEECHHHHHHHHHH
T ss_pred             cc-eeeCCCCHHHHHHHHHHHHHHH------------------HH--HHHHCCcEEEeCHHHHHHHHHh
Confidence            66 6677888888888887765321                  11  111111 457888888888764

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.37  E-value=1.7e-12  Score=138.17  Aligned_cols=202  Identities=17%  Similarity=0.221  Sum_probs=137.0

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhcccc--E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRS--Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~--~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      .+.++|+.|++||||+.++++++...++.  .  ..++..+..   ..|++. .+...+|...-.+|.+..|++|++|||
T Consensus       151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~-~~g~~tga~~~~~g~~~~a~~gtlfld  229 (368)
T 3dzd_A          151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH-EKGAFTGALTRKKGKLELADQGTLFLD  229 (368)
T ss_dssp             SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE-CSCSSSSCCCCEECHHHHTTTSEEEEE
T ss_pred             cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc-cccccCCcccccCChHhhcCCCeEEec
Confidence            34599999999999999999999987664  1  122222111   113332 223345555567899999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.|+.+.|..|+.+|+++++.-  .|.....+.++.+|||+|..-.      .....-.+.+.|+.|+..+-+..++.
T Consensus       230 ei~~l~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~------~~v~~g~fr~dL~~rl~~~~i~lPpL  301 (368)
T 3dzd_A          230 EVGELDQRVQAKLLRVLETGSFTR--LGGNQKIEVDIRVISATNKNLE------EEIKKGNFREDLYYRLSVFQIYLPPL  301 (368)
T ss_dssp             TGGGSCHHHHHHHHHHHHHSEECC--BTCCCBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHHHTSEEEECCCG
T ss_pred             ChhhCCHHHHHHHHHHHHhCCccc--CCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHHHhCCeEEeCCCh
Confidence            999999999999999999998754  4656667788999999996410      11222357889999997655554443


Q ss_pred             Ch--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        521 DR--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       521 d~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      .+  +.-..+++|.+.                     ++........+.+++++.+.|..+             .++-++
T Consensus       302 reR~~Di~~l~~~~l~---------------------~~~~~~~~~~~~~~~~a~~~L~~~-------------~wpGNv  347 (368)
T 3dzd_A          302 RERGKDVILLAEYFLK---------------------KFAKEYKKNCFELSEETKEYLMKQ-------------EWKGNV  347 (368)
T ss_dssp             GGSTTHHHHHHHHHHH---------------------HHHHHTTCCCCCBCHHHHHHHHTC-------------CCTTHH
T ss_pred             hhchhhHHHHHHHHHH---------------------HHHHHcCCCCCCcCHHHHHHHHhC-------------CCCcHH
Confidence            33  223344554432                     222111111467999999888764             466789


Q ss_pred             HHHHHHHHHHHHHH
Q psy11213        599 RNLLAILRLSTALA  612 (621)
Q Consensus       599 R~leslirla~A~A  612 (621)
                      |+|+++++.+-..+
T Consensus       348 reL~n~i~~~~~~~  361 (368)
T 3dzd_A          348 RELKNLIERAVILC  361 (368)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999998776543

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.35  E-value=8.6e-13  Score=141.43  Aligned_cols=201  Identities=19%  Similarity=0.239  Sum_probs=133.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+||+.|++||||+.++++++..+++.   .  ..++..+..   ..|++. .+...+|.....+|.+-.|+||++|||
T Consensus       160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlfld  238 (387)
T 1ny5_A          160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLD  238 (387)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred             CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEc
Confidence            4599999999999999999999997653   1  122221110   112221 122234544557899999999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.|+.+.|..|+.+|+++++.-  .|.....+.++.||||+|..-.      .....-.+.+.|+.|+..+.+..++.
T Consensus       239 ei~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~------~~~~~g~fr~dl~~rl~~~~i~lPpL  310 (387)
T 1ny5_A          239 EIGELSLEAQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNIK------ELVKEGKFREDLYYRLGVIEIEIPPL  310 (387)
T ss_dssp             SGGGCCHHHHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHHHTTEEEECCCG
T ss_pred             ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCCCCHH------HHHHcCCccHHHHHhhcCCeecCCcc
Confidence            999999999999999999998753  4666677788999999997410      11222357889999997655554433


Q ss_pred             Ch--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        521 DR--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       521 d~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      .+  +.-..+++|.+.                     ++........+.+++++.+.|..+             .++-++
T Consensus       311 reR~~Di~~l~~~~l~---------------------~~~~~~~~~~~~~~~~a~~~l~~~-------------~wpGNv  356 (387)
T 1ny5_A          311 RERKEDIIPLANHFLK---------------------KFSRKYAKEVEGFTKSAQELLLSY-------------PWYGNV  356 (387)
T ss_dssp             GGCHHHHHHHHHHHHH---------------------HHHHHTTCCCCEECHHHHHHHHHS-------------CCTTHH
T ss_pred             hhccccHHHHHHHHHH---------------------HHHHHcCCCCCCCCHHHHHHHHhC-------------CCCcHH
Confidence            22  222334444432                     221111111245888988887753             456678


Q ss_pred             HHHHHHHHHHHHHH
Q psy11213        599 RNLLAILRLSTALA  612 (621)
Q Consensus       599 R~leslirla~A~A  612 (621)
                      |+|+++++-+-..|
T Consensus       357 reL~~~i~~~~~~~  370 (387)
T 1ny5_A          357 RELKNVIERAVLFS  370 (387)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999988776554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.35  E-value=7.3e-13  Score=136.82  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=112.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCC---ccccceEEEeecCcccce-eeeccceeecCCCeeEecCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS---SGVGLTAAVMKDPITNEM-VLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~---s~~gLta~~~~~~~~g~~-~l~~GalvlAd~gi~~IDEidk  444 (621)
                      ..|+||+||||||||++++++++.+....+......   +...+..     ...|.. ....+.+..+.++|++|||++.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~-----~~~g~~~~~~~~~~~~~~~~vl~iDEid~  141 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG-----QYIGHTAPKTKEVLKRAMGGVLFIDEAYY  141 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC-----SSTTCHHHHHHHHHHHHTTSEEEEETGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh-----hcccccHHHHHHHHHhcCCCEEEEEChhh
Confidence            458999999999999999999988643110000000   0000110     000100 0012344456789999999997


Q ss_pred             C---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        445 L---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       445 ~---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                      +         ....+..|+..|+++             +.++.+|+++|+..        ...-..+.++|.+||+. .+
T Consensus       142 l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~-~i  199 (309)
T 3syl_A          142 LYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADR--------MENFFQSNPGFRSRIAH-HI  199 (309)
T ss_dssp             SCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEE-EE
T ss_pred             hccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCe-EE
Confidence            6         777889999999864             35678999998751        11112456999999984 55


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213        516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSY  595 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~  595 (621)
                      .++.++.+....|+++.+...                            ...+++++.+.+.++....+.      ...+
T Consensus       200 ~~~~~~~~~~~~il~~~l~~~----------------------------~~~~~~~~~~~l~~~~~~~~~------~~~~  245 (309)
T 3syl_A          200 EFPDYSDEELFEIAGHMLDDQ----------------------------NYQMTPEAETALRAYIGLRRN------QPHF  245 (309)
T ss_dssp             EECCCCHHHHHHHHHHHHHHT----------------------------TCEECHHHHHHHHHHHHHHTT------SSSC
T ss_pred             EcCCcCHHHHHHHHHHHHHHc----------------------------CCCCCHHHHHHHHHHHHHhcc------CCCC
Confidence            567777777777777665421                            245666777666665443321      1233


Q ss_pred             cCHHHHHHHHHHHHHHHH
Q psy11213        596 TSARNLLAILRLSTALAR  613 (621)
Q Consensus       596 ~t~R~leslirla~A~Ak  613 (621)
                      .+.|.+..+++-+...+.
T Consensus       246 gn~r~l~~~l~~a~~~~~  263 (309)
T 3syl_A          246 ANARSIRNALDRARLRQA  263 (309)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            457777777776655443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.35  E-value=5.1e-12  Score=131.24  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccce--eecCCCeeEecCCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL--VLADQGICCIDEFDKLP  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal--vlAd~gi~~IDEidk~~  446 (621)
                      .++||+|+||||||++++++++.+....+. .+.....            .+++   .+.+  .++++|+++|||++.++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------------~~~l---~~~l~~~~~~~~~l~lDEi~~l~  103 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------------PGDL---AAILANSLEEGDILFIDEIHRLS  103 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------------HHHH---HHHHTTTCCTTCEEEETTTTSCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------------hHHH---HHHHHHhccCCCEEEEECCcccc
Confidence            389999999999999999999886544322 1111110            0110   0111  13678999999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCC-----eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213        447 DADRTAIHEVMEQQTISIAKAG-----IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD  521 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~g-----i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d  521 (621)
                      ...+..|+.+|+++.+.+--..     .......++.+|+|+|...             .+.++|++||+.++ ..+.++
T Consensus       104 ~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-------------~~~~~l~~R~~~~i-~l~~~~  169 (324)
T 1hqc_A          104 RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFGIVE-HLEYYT  169 (324)
T ss_dssp             HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-------------SCSCSTTTTCSCEE-ECCCCC
T ss_pred             cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-------------cCCHHHHhcccEEE-ecCCCC
Confidence            9999999999999887652111     1112234688999999762             46788999997444 445566


Q ss_pred             hHHHHHHHHHHH
Q psy11213        522 RDNDLKLAQHIT  533 (621)
Q Consensus       522 ~~~d~~ia~~il  533 (621)
                      .++-..+.++..
T Consensus       170 ~~e~~~~l~~~~  181 (324)
T 1hqc_A          170 PEELAQGVMRDA  181 (324)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            655555555443

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.30  E-value=1.3e-12  Score=151.97  Aligned_cols=189  Identities=9%  Similarity=0.058  Sum_probs=115.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc---E-Eec-CCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      ++||+||||||||.+++++++.+.+.   . +.. +.....  ...+      .|.+   .+++-.+.++|++|||++++
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~--~~~~------~~~l---~~~~~~~~~~vl~lDEi~~~  591 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK--HSTS------GGQL---TEKVRRKPYSVVLLDAIEKA  591 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS--CCCC---------C---HHHHHHCSSSEEEEECGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc--cccc------cchh---hHHHHhCCCeEEEEeCcccc
Confidence            79999999999999999999986321   1 111 110000  0000      0111   12233446789999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      +++.++.|+.+|+++.+...  +.......++.+|+|+|......+...... .-.++++|++|||. .+....++.+.-
T Consensus       592 ~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~-~~~f~p~l~~Rl~~-~i~~~~l~~~~~  667 (758)
T 3pxi_A          592 HPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSNVGASEKDKVMGEL-KRAFRPEFINRIDE-IIVFHSLEKKHL  667 (758)
T ss_dssp             CHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHH-HHHSCHHHHTTSSE-EEECC--CHHHH
T ss_pred             CHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCCCChhhHHHHHHHH-HhhCCHHHHhhCCe-EEecCCCCHHHH
Confidence            99999999999999987764  223344567899999997532100000000 11288999999996 555677788777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213        526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK--GKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA  603 (621)
Q Consensus       526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar--~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les  603 (621)
                      ..|+++.+..                     +....+  .....+++++.++|.+.-           ..++.++|.|+.
T Consensus       668 ~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~a~~~l~~~~-----------~~~~~~~R~L~~  715 (758)
T 3pxi_A          668 TEIVSLMSDQ---------------------LTKRLKEQDLSIELTDAAKAKVAEEG-----------VDLEYGARPLRR  715 (758)
T ss_dssp             HHHHHHHHHH---------------------HHHHHHTTTCEEEECHHHHHHHHGGG-----------CCTTTTTTTHHH
T ss_pred             HHHHHHHHHH---------------------HHHHHHhCCCeEEECHHHHHHHHHhC-----------CCCCCCChHHHH
Confidence            7888776532                     222222  124678999988886520           123346777777


Q ss_pred             HHH
Q psy11213        604 ILR  606 (621)
Q Consensus       604 lir  606 (621)
                      +|+
T Consensus       716 ~i~  718 (758)
T 3pxi_A          716 AIQ  718 (758)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.3e-11  Score=131.53  Aligned_cols=128  Identities=18%  Similarity=0.233  Sum_probs=83.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .+||+||||||||.|++++|+.+...++....   .+...|-+...+++           .+..|   ...|+||||+|.
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~-----------lF~~Ar~~aP~IIFiDEiDa  252 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE-----------LFVMAREHAPSIIFMDEIDS  252 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHH-----------HHHHHHHTCSEEEEEESSSC
T ss_pred             ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHH-----------HHHHHHHhCCceEeeecchh
Confidence            79999999999999999999997766543211   11111111111000           01111   247999999998


Q ss_pred             CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...              ..+.|+..|+.-         .  -..++.||||+|...             .|++||++  
T Consensus       253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~---------~--~~~~V~vIaATNrpd-------------~LDpAllRpG  308 (405)
T 4b4t_J          253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGF---------E--TSKNIKIIMATNRLD-------------ILDPALLRPG  308 (405)
T ss_dssp             CTTSCSCSSSGGGGHHHHHHHHHHHHHHTT---------T--CCCCEEEEEEESCSS-------------SSCHHHHSTT
T ss_pred             hccCCCCCCCCCcHHHHHHHHHHHHhhhcc---------C--CCCCeEEEeccCChh-------------hCCHhHcCCC
Confidence            7432              123444445421         0  123578999999874             69999998  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.||.+...+|.+..++
T Consensus       309 RfD-~~I~i~lPd~~~R~~Il~~~~~  333 (405)
T 4b4t_J          309 RID-RKIEFPPPSVAARAEILRIHSR  333 (405)
T ss_dssp             SSC-CEEECCCCCHHHHHHHHHHHHT
T ss_pred             cCc-eEEEcCCcCHHHHHHHHHHHhc
Confidence            999 5556689999999998876654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=132.29  Aligned_cols=165  Identities=18%  Similarity=0.230  Sum_probs=99.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee---ecCCCeeEecCCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV---LADQGICCIDEFDKLP  446 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv---lAd~gi~~IDEidk~~  446 (621)
                      .++||+|+||||||++++++++.+...++......    +.+...... ...   ..+.+-   ....+|+||||+|.+.
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~----l~~~~~g~~-~~~---~~~~~~~a~~~~~~il~iDEid~l~  220 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS----LTSKYVGEG-EKL---VRALFAVARELQPSIIFIDQVDSLL  220 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC----C-------C-HHH---HHHHHHHHHHSSSEEEEEETGGGGC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH----hhccccchH-HHH---HHHHHHHHHhcCCeEEEEECchhhc
Confidence            49999999999999999999998766554322111    111100000 000   001111   1234899999999883


Q ss_pred             -----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213        447 -----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL  515 (621)
Q Consensus       447 -----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~  515 (621)
                                 ...+..|+..|+.         .....+.++.||||+|+..             .|++++++||+. .+
T Consensus       221 ~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~~-~i  277 (389)
T 3vfd_A          221 CERREGEHDASRRLKTEFLIEFDG---------VQSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFIK-RV  277 (389)
T ss_dssp             --------CTHHHHHHHHHHHHHH---------HC-----CEEEEEEESCGG-------------GCCHHHHTTCCE-EE
T ss_pred             ccCCCccchHHHHHHHHHHHHhhc---------ccccCCCCEEEEEecCCch-------------hcCHHHHcCcce-EE
Confidence                       3334456666653         2222356789999999863             689999999984 45


Q ss_pred             ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213        516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK  578 (621)
Q Consensus       516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~  578 (621)
                      ..+.|+.+....+.++++..+         ...++.+.+..+...+    ..++......|.+
T Consensus       278 ~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~~~~la~~~----~g~~~~~l~~L~~  327 (389)
T 3vfd_A          278 YVSLPNEETRLLLLKNLLCKQ---------GSPLTQKELAQLARMT----DGYSGSDLTALAK  327 (389)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTS---------CCCSCHHHHHHHHHHT----TTCCHHHHHHHHH
T ss_pred             EcCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence            668899999999988776432         1235666666555443    3345545544444

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.27  E-value=7.6e-12  Score=136.38  Aligned_cols=126  Identities=21%  Similarity=0.305  Sum_probs=79.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      ++||+||||||||++++.+++.+....+.......+.+    ..+.    .+.........+.++|+||||++.++.+.+
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~----~ir~----~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q  123 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVK----EIRE----AIERARQNRNAGRRTILFVDEVHRFNKSQQ  123 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHH----HHHH----HHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHH----HHHH----HHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence            89999999999999999999997665443221111100    0000    000000001134678999999999999999


Q ss_pred             hhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHH
Q psy11213        451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL  528 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i  528 (621)
                      ..|+..||+++               +.+|+|+  ||.             ..+.++|+|||.  .+....++.+.-..+
T Consensus       124 ~~LL~~le~~~---------------v~lI~att~n~~-------------~~l~~aL~sR~~--v~~l~~l~~edi~~i  173 (447)
T 3pvs_A          124 DAFLPHIEDGT---------------ITFIGATTENPS-------------FELNSALLSRAR--VYLLKSLSTEDIEQV  173 (447)
T ss_dssp             -CCHHHHHTTS---------------CEEEEEESSCGG-------------GSSCHHHHTTEE--EEECCCCCHHHHHHH
T ss_pred             HHHHHHHhcCc---------------eEEEecCCCCcc-------------cccCHHHhCcee--EEeeCCcCHHHHHHH
Confidence            99999999754               4556655  443             368899999995  344677777777777


Q ss_pred             HHHHHh
Q psy11213        529 AQHITY  534 (621)
Q Consensus       529 a~~il~  534 (621)
                      +++.+.
T Consensus       174 l~~~l~  179 (447)
T 3pvs_A          174 LTQAME  179 (447)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=1.1e-11  Score=126.51  Aligned_cols=133  Identities=23%  Similarity=0.281  Sum_probs=83.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL-  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~-  445 (621)
                      ++||+||||||||++++++++.+....+.....    .+...     ..|... .....+   .....+|++|||+|.+ 
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~  123 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGS----ELVKK-----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIA  123 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG----GGCCC-----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH----HHHHh-----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhc
Confidence            899999999999999999999876554332110    01100     001000 000001   1113469999999987 


Q ss_pred             ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213        446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL  513 (621)
Q Consensus       446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli  513 (621)
                                ....+..+...++...      +  ...+.++.||+|+|+..             .+++++++  ||+. 
T Consensus       124 ~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~ttn~~~-------------~l~~~l~~~~Rf~~-  181 (285)
T 3h4m_A          124 AKRTDALTGGDREVQRTLMQLLAEMD------G--FDARGDVKIIGATNRPD-------------ILDPAILRPGRFDR-  181 (285)
T ss_dssp             BCCSSSCCGGGGHHHHHHHHHHHHHH------T--TCSSSSEEEEEECSCGG-------------GBCHHHHSTTSEEE-
T ss_pred             ccCccccCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEEEeCCCch-------------hcCHHHcCCCcCCe-
Confidence                      3344555655554310      0  01234688999999863             58899999  9985 


Q ss_pred             EEecCCCChHHHHHHHHHHHh
Q psy11213        514 WLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~  534 (621)
                      .+..+.|+.++..+|.++.+.
T Consensus       182 ~i~~~~p~~~~r~~il~~~~~  202 (285)
T 3h4m_A          182 IIEVPAPDEKGRLEILKIHTR  202 (285)
T ss_dssp             EEECCCCCHHHHHHHHHHHHT
T ss_pred             EEEECCCCHHHHHHHHHHHHh
Confidence            566688898888888877653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.21  E-value=2.2e-11  Score=127.06  Aligned_cols=132  Identities=23%  Similarity=0.233  Sum_probs=84.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~  445 (621)
                      .++||+||||||||++++++++.+...++.....    .+.     ....|+.. .....+   .....+|++|||+|.+
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~----~l~-----~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l  122 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLV-----SKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL  122 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH----HHH-----TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH----HHh-----hcccchHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence            3899999999999999999999876554432110    000     00001100 000001   1123589999999988


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      ...           .++.++..|+.-.          ..+.++.||||+|...             .|++++++|||.. 
T Consensus       123 ~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~-------------~ld~al~~Rf~~~-  178 (322)
T 3eie_A          123 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERR-  178 (322)
T ss_dssp             SCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGG-------------GSCHHHHHHCCEE-
T ss_pred             hccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChh-------------hCCHHHHcccCeE-
Confidence            653           2455555554310          1234588999999863             5899999999854 


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +..+.|+.+....|.++.+.
T Consensus       179 i~~~~p~~~~r~~il~~~~~  198 (322)
T 3eie_A          179 IYIPLPDLAARTTMFEINVG  198 (322)
T ss_dssp             EECCCCCHHHHHHHHHHHHT
T ss_pred             EEeCCCCHHHHHHHHHHHhc
Confidence            56788999988888887653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.21  E-value=2.6e-11  Score=129.56  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=82.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .|||+||||||||.|++++|..+...++.....   +...|-+...++.           .+..|   ...|+||||+|.
T Consensus       218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~-----------lF~~Ar~~aP~IIfiDEiDa  286 (437)
T 4b4t_I          218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQ-----------IFKVAGENAPSIVFIDEIDA  286 (437)
T ss_dssp             EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHH-----------HHHHHHHTCSEEEEEEEESS
T ss_pred             CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHH-----------HHHHHHhcCCcEEEEehhhh
Confidence            799999999999999999999977665542110   1111111100000           00111   247999999998


Q ss_pred             CChh-----------hh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA-----------DR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~-----------~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...           ..   ..|+..|+..           .-..++.||||+|...             .|++||++  
T Consensus       287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpG  342 (437)
T 4b4t_I          287 IGTKRYDSNSGGEREIQRTMLELLNQLDGF-----------DDRGDVKVIMATNKIE-------------TLDPALIRPG  342 (437)
T ss_dssp             SSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----------CCSSSEEEEEEESCST-------------TCCTTSSCTT
T ss_pred             hcccCCCCCCCccHHHHHHHHHHHHHhhCc-----------CCCCCEEEEEeCCChh-------------hcCHHHhcCC
Confidence            6322           12   2344444321           1134578999999874             69999998  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.||.+...+|.+..+.
T Consensus       343 RfD-~~I~v~lPd~~~R~~Il~~~l~  367 (437)
T 4b4t_I          343 RID-RKILFENPDLSTKKKILGIHTS  367 (437)
T ss_dssp             TEE-EEECCCCCCHHHHHHHHHHHHT
T ss_pred             cee-EEEEcCCcCHHHHHHHHHHHhc
Confidence            999 4566799999999998876654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.20  E-value=6.8e-11  Score=123.49  Aligned_cols=134  Identities=20%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc-cccEEe-cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA-RRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      ++||+||||||||+|++++++.+ ....+. .+..     +..... ........-.-...-....+|+||||+|.+...
T Consensus        47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~-----l~~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~  120 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD-----LVSKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGS  120 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS-----SCCSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCC
T ss_pred             eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH-----HHhhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccc
Confidence            89999999999999999999987 332221 1111     110000 000000000000001124579999999987332


Q ss_pred             -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                                 ..+.++..|+.-.          .-+.++.||||+|...             .+++++++||| ..+..
T Consensus       121 ~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~-~~i~i  176 (322)
T 1xwi_A          121 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFE-KRIYI  176 (322)
T ss_dssp             SSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTT-------------TSCHHHHHTCC-EEEEC
T ss_pred             cccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCcc-------------cCCHHHHhhcC-eEEEe
Confidence                       2234444454210          1135688999999873             58999999998 45566


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy11213        518 DKPDRDNDLKLAQHITY  534 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~  534 (621)
                      +.|+.+....|.++.+.
T Consensus       177 ~~P~~~~r~~il~~~l~  193 (322)
T 1xwi_A          177 PLPEPHARAAMFKLHLG  193 (322)
T ss_dssp             CCCCHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            88898888888877653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.20  E-value=3e-12  Score=117.54  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      +.||||+|+||||||++++++++.++ ..+.....  .  +.         .  .+..|.+..|++|++||||++.++++
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~--~--~~---------~--~~~~~~~~~a~~~~l~lDei~~l~~~   90 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV--E--YL---------I--DMPMELLQKAEGGVLYVGDIAQYSRN   90 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST--T--HH---------H--HCHHHHHHHTTTSEEEEEECTTCCHH
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechh--h--CC---------h--HhhhhHHHhCCCCeEEEeChHHCCHH
Confidence            45999999999999999999998865 22111100  0  11         0  01356666788999999999999999


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      .+..|+++|+++.            +.++.+|+|+|.....      . ..- +.+.|++||..+.+.
T Consensus        91 ~q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~------~-~~~-~~~~L~~rl~~~~i~  138 (143)
T 3co5_A           91 IQTGITFIIGKAE------------RCRVRVIASCSYAAGS------D-GIS-CEEKLAGLFSESVVR  138 (143)
T ss_dssp             HHHHHHHHHHHHT------------TTTCEEEEEEEECTTT------C---C-HHHHHHHHSSSEEEE
T ss_pred             HHHHHHHHHHhCC------------CCCEEEEEecCCCHHH------H-HhC-ccHHHHHHhcCcEEe
Confidence            9999999999752            5668899999975321      2 222 678899998655443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.20  E-value=4.7e-11  Score=128.77  Aligned_cols=128  Identities=20%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .|||+||||||||+|++++|+.+...++....   .+...|-+...++.           .+..|   ...|+||||+|.
T Consensus       245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~-----------lF~~Ar~~aP~IIfiDEiDa  313 (467)
T 4b4t_H          245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE-----------LFEMARTKKACIIFFDEIDA  313 (467)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHH-----------HHHHHHHTCSEEEEEECCTT
T ss_pred             ceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHH-----------HHHHHHhcCCceEeeccccc
Confidence            79999999999999999999997766543211   11111111100000           01111   257999999998


Q ss_pred             CChh-----------h---hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA-----------D---RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~-----------~---~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...           .   ...++..|+..           .-..++.||||+|...             .|++||++  
T Consensus       314 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpG  369 (467)
T 4b4t_H          314 VGGARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNRPN-------------TLDPALLRPG  369 (467)
T ss_dssp             TSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSCTT-------------SBCHHHHSTT
T ss_pred             ccccccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCCcc-------------cCChhhhccc
Confidence            6422           1   12334444321           1134578999999874             69999998  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.|+.+...+|.+..++
T Consensus       370 RFD-~~I~i~lPd~~~R~~Ilk~~l~  394 (467)
T 4b4t_H          370 RID-RKVEFSLPDLEGRANIFRIHSK  394 (467)
T ss_dssp             TCC-EEECCCCCCHHHHHHHHHHHHT
T ss_pred             ccc-EEEEeCCcCHHHHHHHHHHHhc
Confidence            999 5566789999999999886654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.19  E-value=5.6e-11  Score=125.80  Aligned_cols=132  Identities=23%  Similarity=0.252  Sum_probs=83.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccceee---cCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGALVL---ADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Galvl---Ad~gi~~IDEidk~  445 (621)
                      .++||+||||||||+|++++++.+...++.....    .+....     .|+.. .....+-.   ...+|+||||+|.+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~----~l~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l  155 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLVSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDAL  155 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH----HHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH----HHhhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence            3899999999999999999999876544332100    011000     01000 00001111   24689999999998


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      ...           ..+.|+..|+.-.          ..+.++.||||+|...             .|++++++|||.. 
T Consensus       156 ~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~-  211 (355)
T 2qp9_X          156 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERR-  211 (355)
T ss_dssp             TC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGG-------------GSCHHHHHTCCEE-
T ss_pred             cccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcc-------------cCCHHHHcccCEE-
Confidence            743           2455666665311          1134588999999863             5899999999854 


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q psy11213        515 LIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~  534 (621)
                      +..+.|+.+....|.++.+.
T Consensus       212 i~i~~P~~~~r~~il~~~l~  231 (355)
T 2qp9_X          212 IYIPLPDLAARTTMFEINVG  231 (355)
T ss_dssp             EECCCCCHHHHHHHHHHHHT
T ss_pred             EEeCCcCHHHHHHHHHHHHh
Confidence            46688998888888877653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.19  E-value=2.4e-11  Score=131.04  Aligned_cols=128  Identities=24%  Similarity=0.268  Sum_probs=82.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .|||+||||||||.|++++|+.+...++....   .+...|-+...++.           .+..|   ...|+||||+|.
T Consensus       217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~-----------lF~~A~~~aP~IifiDEiDa  285 (434)
T 4b4t_M          217 GALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRD-----------AFALAKEKAPTIIFIDELDA  285 (434)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHH-----------HHHHHHHHCSEEEEEECTHH
T ss_pred             eeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHH-----------HHHHHHhcCCeEEeecchhh
Confidence            79999999999999999999997766544211   01111111100000           00011   357999999987


Q ss_pred             CChh-----------h---hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA-----------D---RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~-----------~---~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...           .   ...|+..|+.-         .  -..++.||||+|...             .|++||++  
T Consensus       286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~---------~--~~~~ViVIaaTNrp~-------------~LD~AllRpG  341 (434)
T 4b4t_M          286 IGTKRFDSEKSGDREVQRTMLELLNQLDGF---------S--SDDRVKVLAATNRVD-------------VLDPALLRSG  341 (434)
T ss_dssp             HHCCCSSGGGGTTHHHHHHHHHHHHHHTTS---------C--SSCSSEEEEECSSCC-------------CCCTTTCSTT
T ss_pred             hhhccCCCCCCCchHHHHHHHHHHHHhhcc---------C--CCCCEEEEEeCCCch-------------hcCHhHhcCC
Confidence            4211           1   12355555421         1  134578999999874             69999998  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.|+.+...+|.+..++
T Consensus       342 RfD-~~I~i~lPd~~~R~~Il~~~~~  366 (434)
T 4b4t_M          342 RLD-RKIEFPLPSEDSRAQILQIHSR  366 (434)
T ss_dssp             SEE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             cee-EEEEeCCcCHHHHHHHHHHHhc
Confidence            999 5556689999999999887664

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.19  E-value=3.9e-11  Score=129.50  Aligned_cols=129  Identities=21%  Similarity=0.257  Sum_probs=82.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeec---CCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLA---DQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlA---d~gi~~IDEidk~  445 (621)
                      .|||+||||||||+|++++|+.+...++.....    .+.     +...|+  ..+. ..+..|   ...|+||||+|.+
T Consensus       217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s----~l~-----sk~~Gese~~ir-~~F~~A~~~~P~IifiDEiDai  286 (437)
T 4b4t_L          217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS----GIV-----DKYIGESARIIR-EMFAYAKEHEPCIIFMDEVDAI  286 (437)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG----GTC-----CSSSSHHHHHHH-HHHHHHHHSCSEEEEEECCCSS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh----hhc-----cccchHHHHHHH-HHHHHHHhcCCceeeeeccccc
Confidence            799999999999999999999977665432110    011     000111  0000 001111   3579999999986


Q ss_pred             Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      ...              ..+.|+..|+...           -..++.||||+|...             .|++||++  |
T Consensus       287 ~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~-------------~LDpAllRpGR  342 (437)
T 4b4t_L          287 GGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPD-------------TLDPALLRPGR  342 (437)
T ss_dssp             SCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTT-------------SSCTTTTSTTS
T ss_pred             ccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCch-------------hhCHHHhCCCc
Confidence            321              1234555565311           124578999999774             69999997  5


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      || ..+.++.||.+...+|.+..+.
T Consensus       343 fD-~~I~i~lPd~~~R~~Il~~~~~  366 (437)
T 4b4t_L          343 LD-RKVEIPLPNEAGRLEIFKIHTA  366 (437)
T ss_dssp             EE-EEECCCCCCHHHHHHHHHHHHH
T ss_pred             cc-eeeecCCcCHHHHHHHHHHHhc
Confidence            99 5566689999999999886664

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.19  E-value=3.3e-11  Score=141.87  Aligned_cols=198  Identities=12%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc---cE-Eec-CCCCcc---ccceEEEeecCcccceeee-cc----ceeecCCCe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR---SQ-YTT-GRGSSG---VGLTAAVMKDPITNEMVLE-GG----ALVLADQGI  436 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr---~~-~~~-g~~~s~---~gLta~~~~~~~~g~~~l~-~G----alvlAd~gi  436 (621)
                      .++||+||||||||++++++++.+.+   .. +.. +.....   ..+.++.     .|....+ .|    ++-.+.+||
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~-----~~~~G~~~~g~l~~~~~~~~~~v  663 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP-----PGYVGYEEGGQLTEAVRRRPYSV  663 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-------------------CHHHHHHHCSSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCC-----CCCcCccccchHHHHHHhCCCeE
Confidence            48999999999999999999998743   22 221 111110   1121110     0100011 12    223345789


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCC-----CC--CCccc------ccCCC
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYN-----PK--RSIEQ------NIQLP  503 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~-----~~--~~~~~------~~~L~  503 (621)
                      ++|||+++++++.++.|+.+|+++.+.-. .|....+ .++.||+|+|.....+.     +.  ..+.+      .-.+.
T Consensus       664 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~  741 (854)
T 1qvr_A          664 ILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR  741 (854)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred             EEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999988743 3444443 34679999997311000     00  00111      22578


Q ss_pred             HhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH-HcC-CCCCCHHHHHHHHHHHH
Q psy11213        504 AALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC-KGK-NPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       504 ~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a-r~~-~p~ls~~a~~~l~~~y~  581 (621)
                      ++|++|||.+++. .+++.+.-..|+++.+..                     +.... +.. .+.+++++.++|.++. 
T Consensus       742 ~~l~~Rl~~~i~~-~pl~~edi~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~a~~~L~~~~-  798 (854)
T 1qvr_A          742 PEFLNRLDEIVVF-RPLTKEQIRQIVEIQLSY---------------------LRARLAEKRISLELTEAAKDFLAERG-  798 (854)
T ss_dssp             HHHHHTCSBCCBC-CCCCHHHHHHHHHHHHHH---------------------HHHHHHTTTCEEEECHHHHHHHHHHH-
T ss_pred             HHHHHhcCeEEeC-CCCCHHHHHHHHHHHHHH---------------------HHHHHHhCCceEEECHHHHHHHHHcC-
Confidence            9999999966665 447777777777776532                     11111 111 3568888888887641 


Q ss_pred             HHHHHhhcCCCCCccCHHHHHHHHHH
Q psy11213        582 ELRKVARNSRDMSYTSARNLLAILRL  607 (621)
Q Consensus       582 ~lR~~~~~~~~~~~~t~R~leslirl  607 (621)
                            .    ..+.++|.|..+++-
T Consensus       799 ------~----~~~gn~R~L~~~i~~  814 (854)
T 1qvr_A          799 ------Y----DPVFGARPLRRVIQR  814 (854)
T ss_dssp             ------C----BTTTBTSTHHHHHHH
T ss_pred             ------C----CCCCChHHHHHHHHH
Confidence                  1    113456777776653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.19  E-value=3e-11  Score=130.15  Aligned_cols=129  Identities=22%  Similarity=0.271  Sum_probs=84.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .+||+||||||||+|++++|+.+...++.....   +...|-+...+++           .+..|   ...|+||||+|.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~-----------lF~~A~~~aP~IifiDEiD~  276 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRD-----------VFRLARENAPSIIFIDEVDS  276 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHH-----------HHHHHHHTCSEEEEEECTHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHH-----------HHHHHHHcCCCeeechhhhh
Confidence            699999999999999999999987666542111   1111111111000           01111   247999999986


Q ss_pred             CCh-----------h---hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPD-----------A---DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~-----------~---~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +..           .   ..+.|+..|+.-         .  -..++.||||+|...             .|++||++  
T Consensus       277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~---------~--~~~~v~vI~aTN~~~-------------~LD~AllRpG  332 (428)
T 4b4t_K          277 IATKRFDAQTGSDREVQRILIELLTQMDGF---------D--QSTNVKVIMATNRAD-------------TLDPALLRPG  332 (428)
T ss_dssp             HHCSCSSSCSCCCCHHHHHHHHHHHHHHHS---------C--SSCSEEEEEEESCSS-------------SCCHHHHSSS
T ss_pred             hhccccCCCCCCChHHHHHHHHHHHHhhCC---------C--CCCCEEEEEecCChh-------------hcChhhhcCC
Confidence            321           1   124455555431         0  123478999999774             69999998  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      |||..+.+.+.|+.+....|.+..+.
T Consensus       333 Rfd~~I~~p~lPd~~~R~~Il~~~~~  358 (428)
T 4b4t_K          333 RLDRKIEFPSLRDRRERRLIFGTIAS  358 (428)
T ss_dssp             SEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            99977777678999999888887664

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.18  E-value=7.1e-11  Score=124.91  Aligned_cols=82  Identities=13%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      ||++|||++.++.+.++.|+..|++....+    ....-+....++++++..           ....++++|+|||..  
T Consensus       191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~--  253 (368)
T 3uk6_A          191 GVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLI--  253 (368)
T ss_dssp             CEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEE--
T ss_pred             ceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCCC-----------CcccCCHHHHhhccE--
Confidence            699999999999999999999998632111    000001112333333211           113589999999954  


Q ss_pred             EecCCCChHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il  533 (621)
                      +....++.++...++++.+
T Consensus       254 i~~~~~~~~e~~~il~~~~  272 (368)
T 3uk6_A          254 VSTTPYSEKDTKQILRIRC  272 (368)
T ss_dssp             EEECCCCHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHH
Confidence            4667777777777766554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.17  E-value=9.2e-12  Score=114.53  Aligned_cols=114  Identities=15%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      +.||||+|+||||||++++++++.+++..      ..-. +.++...+   .  ....|.+..|++|++||||++.++++
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~------~~~v-~~~~~~~~---~--~~~~~~~~~a~~g~l~ldei~~l~~~   91 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQ------GEFV-YRELTPDN---A--PQLNDFIALAQGGTLVLSHPEHLTRE   91 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTTTT------SCCE-EEECCTTT---S--SCHHHHHHHHTTSCEEEECGGGSCHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCccC------CCEE-EECCCCCc---c--hhhhcHHHHcCCcEEEEcChHHCCHH
Confidence            45999999999999999999999865421      0001 11110000   0  12345666788999999999999999


Q ss_pred             hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      .+..|+.+|+.             .+.++.+|+|+|....      .....-.+.+.|+.|+..+
T Consensus        92 ~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~------~~~~~~~~~~~L~~rl~~~  137 (145)
T 3n70_A           92 QQYHLVQLQSQ-------------EHRPFRLIGIGDTSLV------ELAASNHIIAELYYCFAMT  137 (145)
T ss_dssp             HHHHHHHHHHS-------------SSCSSCEEEEESSCHH------HHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-------------cCCCEEEEEECCcCHH------HHHHcCCCCHHHHHHhcCC
Confidence            99999999932             2456789999997511      1112235778888887533

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.17  E-value=7.5e-11  Score=124.91  Aligned_cols=164  Identities=15%  Similarity=0.184  Sum_probs=98.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~  445 (621)
                      .++||+||||||||++++++++.+...++.....    .+..     ...|+.. .....+   ..+..+|+||||+|.+
T Consensus       118 ~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~----~l~~-----~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l  188 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISAS----SLTS-----KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL  188 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG----GGCC-----SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH----Hhhc-----cccchHHHHHHHHHHHHHhcCCeEEEEeCchhh
Confidence            4899999999999999999999875544321110    0110     0011100 000011   1124689999999887


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      ...           .++.++..|+..         ....+.++.||||+|+..             .|++++++||+ ..
T Consensus       189 ~~~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf~-~~  245 (357)
T 3d8b_A          189 LSQRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRPQ-------------EIDEAARRRLV-KR  245 (357)
T ss_dssp             TBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG-------------GBCHHHHTTCC-EE
T ss_pred             hccCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCChh-------------hCCHHHHhhCc-eE
Confidence            432           234566666532         222356789999999863             58899999998 45


Q ss_pred             EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK  578 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~  578 (621)
                      +....|+.+....+..+.+...         ...++.+.+..+...+    ..++......|.+
T Consensus       246 i~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~l~~la~~t----~G~s~~dl~~l~~  296 (357)
T 3d8b_A          246 LYIPLPEASARKQIVINLMSKE---------QCCLSEEEIEQIVQQS----DAFSGADMTQLCR  296 (357)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTS---------CBCCCHHHHHHHHHHT----TTCCHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHHhhc---------CCCccHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence            5568889988888888776432         1235566666555544    3445544444444

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.17  E-value=9.4e-11  Score=149.53  Aligned_cols=202  Identities=16%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEe--c-CCCCccccceEEEeecCcccceeeeccceeec----CCCeeEec
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT--T-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA----DQGICCID  440 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA----d~gi~~ID  440 (621)
                      ++.|+||+||||||||++++.+....+.....  . ...+++..+.. ..... ........|.+..+    ...|+|||
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~-~i~~~-~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS-ALHRH-TNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHH-HHHHH-BCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHH-HHHHH-hhhccccCCccccCCCCCceEEEEec
Confidence            56799999999999999996555443322111  0 11111110100 00000 00001112333222    23599999


Q ss_pred             CCCCCChh------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC--CCCCCCCCCcccccCCCHhHhccccE
Q psy11213        441 EFDKLPDA------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA--YGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       441 Eidk~~~~------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~--~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      |+|....+      ....|.+.||.+.+...+.+....+ .++.+|||+||.  +||          ..|+++|++||  
T Consensus      1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR----------~~l~~rllRrf-- 1410 (2695)
T 4akg_A         1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGR----------IPMSERFTRHA-- 1410 (2695)
T ss_dssp             TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTC----------CCCCHHHHTTE--
T ss_pred             ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCC----------ccCChhhhhee--
Confidence            99875443      4678888899888877666666666 789999999998  566          36999999999  


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC-C
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS-R  591 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~-~  591 (621)
                      .++..+.|+.+....|...++..+....          . .+           ..+.+...+...+.|..+++.-... +
T Consensus      1411 ~vi~i~~P~~~~l~~I~~~il~~~l~~~----------~-~v-----------~~~~~~lv~ati~~y~~v~~~~~~~~k 1468 (2695)
T 4akg_A         1411 AILYLGYPSGKSLSQIYEIYYKAIFKLV----------P-EF-----------RSYTEPFARASVHLYNECKARYSTGLQ 1468 (2695)
T ss_dssp             EEEECCCCTTTHHHHHHHHHHHHHTTSS----------G-GG-----------GGGHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHHhccC----------H-HH-----------HHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            6678899999999999998877653210          0 01           1233455667777887777653211 1


Q ss_pred             CCCccCHHHHHHHHH
Q psy11213        592 DMSYTSARNLLAILR  606 (621)
Q Consensus       592 ~~~~~t~R~leslir  606 (621)
                      .....++|.+-.+++
T Consensus      1469 ~HY~FnlRDLsrv~q 1483 (2695)
T 4akg_A         1469 SHYLFSPRELTRLVR 1483 (2695)
T ss_dssp             TTCCCCHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHH
Confidence            233478888876654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.16  E-value=1.8e-10  Score=125.66  Aligned_cols=136  Identities=21%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc-cccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA-RRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      .++||+||||||||+|++++++.+ ...++... .+.   +........ .......-........+|+||||+|.+...
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~-~~~---l~~~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~  242 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSIS-SSD---LVSKWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGS  242 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC-CC------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe-HHH---HHhhhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhccC
Confidence            389999999999999999999987 33222211 110   111100000 000000000001124589999999998432


Q ss_pred             -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                                 ..+.++..|+.-.          .-+.++.||||+|...             .|+++|++|||. .+..
T Consensus       243 ~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~-~i~i  298 (444)
T 2zan_A          243 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEK-RIYI  298 (444)
T ss_dssp             SSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCGG-------------GSCHHHHTTCCE-EEEC
T ss_pred             CCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCcc-------------ccCHHHHhhcce-EEEe
Confidence                       2344555554310          1245689999999873             589999999985 4556


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy11213        518 DKPDRDNDLKLAQHITY  534 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~  534 (621)
                      +.|+.+....|.++.+.
T Consensus       299 ~~P~~~~r~~il~~~l~  315 (444)
T 2zan_A          299 PLPEAHARAAMFRLHLG  315 (444)
T ss_dssp             CCCCHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            88898888888776653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.15  E-value=1.6e-10  Score=118.62  Aligned_cols=137  Identities=22%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccceeecCCCeeEecCCCCCChh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGALVLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~  448 (621)
                      .++||+||||||||++++++++.+....+......    +..... . ..+... ..-+....+..++++|||+|.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~----l~~~~~-~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  128 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAAS----LTSKYV-G-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE  128 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT----TSSSSC-S-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH----Hhhccc-c-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence            38999999999999999999998765443211100    000000 0 000000 0000011234689999999988543


Q ss_pred             -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                                 .++.++..|+.....        ....++.||+|+|...             .+++++++||+ ..+..
T Consensus       129 ~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~-------------~l~~~l~~R~~-~~i~~  186 (297)
T 3b9p_A          129 RSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ-------------ELDEAALRRFT-KRVYV  186 (297)
T ss_dssp             C-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG-------------GBCHHHHHHCC-EEEEC
T ss_pred             cccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh-------------hCCHHHHhhCC-eEEEe
Confidence                       334455555532111        1124578999999763             58899999998 45566


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy11213        518 DKPDRDNDLKLAQHITY  534 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~  534 (621)
                      +.|+.+....+.++.+.
T Consensus       187 ~~p~~~~r~~il~~~~~  203 (297)
T 3b9p_A          187 SLPDEQTRELLLNRLLQ  203 (297)
T ss_dssp             CCCCHHHHHHHHHHHHG
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            78888888888777654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.14  E-value=2.9e-10  Score=119.23  Aligned_cols=134  Identities=22%  Similarity=0.249  Sum_probs=84.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~  448 (621)
                      |++|+||||+|||+|++.+++.+.... +++|.....            .+...   +.+ .+..+.|++|||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------------~~~l~---~~~~~~~~~~v~~iDE~~~l~~~  117 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------------QGDMA---AILTSLERGDVLFIDEIHRLNKA  117 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------------HHHHH---HHHHHCCTTCEEEEETGGGCCHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------------HHHHH---HHHHHccCCCEEEEcchhhcCHH
Confidence            899999999999999999999864332 233321110            00000   000 0234689999999999988


Q ss_pred             hhhhhHhhhcceEEEE--ecC---CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        449 DRTAIHEVMEQQTISI--AKA---GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       449 ~~~~L~eame~q~isi--~k~---gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      .+..|+.+|+...+.+  .+.   ........++.+++++|...             .|++++.+||. +....|.++.+
T Consensus       118 ~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-------------~Ls~~l~sR~~-l~~~Ld~~~~~  183 (334)
T 1in4_A          118 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFG-IILELDFYTVK  183 (334)
T ss_dssp             HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCS-EEEECCCCCHH
T ss_pred             HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-------------cCCHHHHHhcC-ceeeCCCCCHH
Confidence            8889988887653221  110   01111223577777777652             68999999996 44666778777


Q ss_pred             HHHHHHHHHH
Q psy11213        524 NDLKLAQHIT  533 (621)
Q Consensus       524 ~d~~ia~~il  533 (621)
                      +-..+.++..
T Consensus       184 ~l~~iL~~~~  193 (334)
T 1in4_A          184 ELKEIIKRAA  193 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7666666553

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.14  E-value=2.3e-11  Score=125.36  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee-------ecCCCeeEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV-------LADQGICCIDEF  442 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv-------lAd~gi~~IDEi  442 (621)
                      ..+||+||||||||+|++++|+.+...++....+    ++.....-.  +... + ...+-       ....+|++|||+
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~----~l~~~~~g~--~~~~-i-~~~f~~a~~~~~~~~~~vl~iDEi  108 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG----ELESGNAGE--PAKL-I-RQRYREAAEIIRKGNMCCLFINDL  108 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH----HHHCC---H--HHHH-H-HHHHHHHHHHHTTSSCCCEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH----HhhhccCch--hHHH-H-HHHHHHHHHHHhcCCCeEEEEech
Confidence            3799999999999999999999875544321100    011000000  0000 0 00111       125689999999


Q ss_pred             CCCCh-------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213        443 DKLPD-------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-  508 (621)
Q Consensus       443 dk~~~-------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-  508 (621)
                      |++.+             ..++.|++.|+..+..-........-..++.||||+|...             .|+++|++ 
T Consensus       109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~R~  175 (293)
T 3t15_A          109 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLIRD  175 (293)
T ss_dssp             C--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHHHH
T ss_pred             hhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHhCC
Confidence            98765             2347888888754322111111122345689999999763             58899995 


Q ss_pred             -cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 -RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 -RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                       |||.++.   .|+.+...+|+++++.
T Consensus       176 ~R~d~~i~---~P~~~~r~~Il~~~~~  199 (293)
T 3t15_A          176 GRMEKFYW---APTREDRIGVCTGIFR  199 (293)
T ss_dssp             HHEEEEEE---CCCHHHHHHHHHHHHG
T ss_pred             CCCceeEe---CcCHHHHHHHHHHhcc
Confidence             9997665   4788998999887654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.12  E-value=4.6e-10  Score=123.17  Aligned_cols=195  Identities=17%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecCcccceeeeccc----eeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDPITNEMVLEGGA----LVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~~~g~~~l~~Ga----lvlAd~gi~~IDEidk~  445 (621)
                      |+||+||||||||++++.+++.+.+...-.. .+..-..+..+   ....|++.-.-..    +..+.++|+|||    .
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~  275 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A  275 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----C
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C
Confidence            9999999999999999999998643211000 00000001111   0112222111011    111347899999    4


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ..+.++.|+.+|+.+               ++.+|+|+|+..        +...+.++++|++||.  .+.++.|+.+..
T Consensus       276 ~~~a~~~L~~~L~~g---------------~v~vI~at~~~e--------~~~~~~~~~al~~Rf~--~i~v~~p~~e~~  330 (468)
T 3pxg_A          276 AIDASNILKPSLARG---------------ELQCIGATTLDE--------YRKYIEKDAALERRFQ--PIQVDQPSVDES  330 (468)
T ss_dssp             --------CCCTTSS---------------SCEEEEECCTTT--------THHHHTTCSHHHHSEE--EEECCCCCHHHH
T ss_pred             chhHHHHHHHhhcCC---------------CEEEEecCCHHH--------HHHHhhcCHHHHHhCc--cceeCCCCHHHH
Confidence            455667788888744               467999999873        3344578999999995  478899999998


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213        526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA  603 (621)
Q Consensus       526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les  603 (621)
                      ..|.++++..+...     ....++.+.+...+.++..+  ...+++.+.+.+...-...+-..    ...+..+++++.
T Consensus       331 ~~iL~~~~~~~~~~-----~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~----~~~p~~i~~l~~  401 (468)
T 3pxg_A          331 IQILQGLRDRYEAH-----HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS----FTTPPNLKELEQ  401 (468)
T ss_dssp             HHHHHHTTTTSGGG-----SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT----TSCCSSTHHHHH
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc----CCCchHHHHHHH
Confidence            99988776432211     22458889999999988876  55688899988876543333321    234455677665


Q ss_pred             HHH
Q psy11213        604 ILR  606 (621)
Q Consensus       604 lir  606 (621)
                      .+.
T Consensus       402 ~i~  404 (468)
T 3pxg_A          402 KLD  404 (468)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.12  E-value=3.9e-10  Score=144.61  Aligned_cols=201  Identities=18%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccE-EecC--CCCccccceEEEeecCcccceeeec--cceeecC--C--CeeE
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-YTTG--RGSSGVGLTAAVMKDPITNEMVLEG--GALVLAD--Q--GICC  438 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g--~~~s~~gLta~~~~~~~~g~~~l~~--GalvlAd--~--gi~~  438 (621)
                      .+.||||+||||||||.+++.....++... ....  ..+++..+.+..  + ...++....  |.+..+-  |  .|+|
T Consensus      1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~--e-~~~e~~~~~~~G~~~~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A         1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTF--D-HHCEYKRTPSGETVLRPTQLGKWLVVF 1379 (3245)
T ss_dssp             TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHH--H-HHEEEEECTTSCEEEEESSTTCEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHH--h-hcceEEeccCCCcccCCCcCCceEEEE
Confidence            668999999999999988866554443321 1111  111111111100  0 011222222  7776663  2  3999


Q ss_pred             ecCCCCCChh------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC--CCCCCCCCcccccCCCHhHhccc
Q psy11213        439 IDEFDKLPDA------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY--GRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       439 IDEidk~~~~------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~--g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      |||+|....+      ....|+++|+.+.+...+.+....+ .++.++||+||.+  ||          ..|++.|++||
T Consensus      1380 iDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr----------~~l~~Rf~r~F 1448 (3245)
T 3vkg_A         1380 CDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGR----------VQLTHRFLRHA 1448 (3245)
T ss_dssp             ETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTC----------CCCCHHHHTTC
T ss_pred             ecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCC----------ccCCHHHHhhc
Confidence            9999987654      5678999999988887666666666 6799999999983  55          47999999999


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS  590 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~  590 (621)
                        .++..+.|+.+....|...++..+... .     +.     +           ..+.+...+..++.|..+++.-...
T Consensus      1449 --~vi~i~~ps~esL~~If~til~~~l~~-~-----p~-----l-----------~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A         1449 --PILLVDFPSTSSLTQIYGTFNRALMKL-L-----PN-----L-----------RSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp             --CEEECCCCCHHHHHHHHHHHHHHHTTS-C-----GG-----G-----------TTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             --eEEEeCCCCHHHHHHHHHHHHHHHHhh-C-----hH-----H-----------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              567789999999888887766543210 0     00     0           1234567778888888887753221


Q ss_pred             -CCCCccCHHHHHHHHH
Q psy11213        591 -RDMSYTSARNLLAILR  606 (621)
Q Consensus       591 -~~~~~~t~R~leslir  606 (621)
                       +.....++|.+-.+++
T Consensus      1505 ~k~HY~FnLRDLsrv~q 1521 (3245)
T 3vkg_A         1505 IQAHYIYSPRELSRWDR 1521 (3245)
T ss_dssp             TSTTCCCCHHHHHHHHH
T ss_pred             cCCCccccHHHHHHHHH
Confidence             1223368898877655

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=117.30  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~  446 (621)
                      ++||+||||||||++++++++.+....+.. +.....  ...      ..+...+ .+.+..+   ..+|++|||+|.+.
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~--~~~------~~~~~~~-~~~~~~a~~~~~~vl~iDeid~l~  111 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE--VIG------GLGAARV-RSLFKEARARAPCIVYIDEIDAVG  111 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS--SST------THHHHHH-HHHHHHHHHTCSEEEEEECC----
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh--hcc------ChhHHHH-HHHHHHHHhcCCeEEEEeCcchhh
Confidence            899999999999999999999865544321 111000  000      0000000 0111111   25799999999983


Q ss_pred             ------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213        447 ------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL  512 (621)
Q Consensus       447 ------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl  512 (621)
                                  ...+..+.+.++.    +.  +.  .-+.++.+|+|+|...             .+++++++  |||.
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~ll~~----~~--~~--~~~~~~~vi~~tn~~~-------------~ld~~l~~~~R~~~  170 (262)
T 2qz4_A          112 KKRSTTMSGFSNTEEEQTLNQLLVE----MD--GM--GTTDHVIVLASTNRAD-------------ILDGALMRPGRLDR  170 (262)
T ss_dssp             ---------------CHHHHHHHHH----HH--TC--CTTCCEEEEEEESCGG-------------GGGSGGGSTTSCCE
T ss_pred             ccccccccCccchhHHHHHHHHHHH----hh--Cc--CCCCCEEEEecCCChh-------------hcCHHHhcCCcCCe
Confidence                        2333344444331    00  00  1134688999999763             47789998  9985


Q ss_pred             EEEecCCCChHHHHHHHHHHHhh
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~  535 (621)
                       .+..+.|+.++..++.++.+..
T Consensus       171 -~i~i~~p~~~~r~~il~~~~~~  192 (262)
T 2qz4_A          171 -HVFIDLPTLQERREIFEQHLKS  192 (262)
T ss_dssp             -EEECCSCCHHHHHHHHHHHHHH
T ss_pred             -EEEeCCcCHHHHHHHHHHHHHh
Confidence             4556888998888888887653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.12  E-value=5.5e-10  Score=142.61  Aligned_cols=190  Identities=18%  Similarity=0.214  Sum_probs=134.6

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      -+.++++.||||||||.+++++|+.+.+..+.  +..+.....+          |..  -.|+  ...|.++|+||||++
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g~--~~~Gaw~~~DE~nr~  709 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVGI--TQIGAWGCFDEFNRL  709 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHHH--HHHTCEEEEETTTSS
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHHH--HhcCCEeeehhhhhc
Confidence            44678999999999999999999998876543  2222221111          110  0111  124789999999999


Q ss_pred             Chhhhhhh-------HhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213        446 PDADRTAI-------HEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD  518 (621)
Q Consensus       446 ~~~~~~~L-------~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d  518 (621)
                      +++..+.+       .++|.++..++.-.|....++..|.|++|+||.+         .+..+||++|.+||  ..+..+
T Consensus       710 ~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy---------~g~~eLP~~Lk~~F--r~v~m~  778 (2695)
T 4akg_A          710 DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGY---------NGRSELPENLKKSF--REFSMK  778 (2695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCS---------SSSCCCCHHHHTTE--EEEECC
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCc---------cCcccccHHHHhhe--EEEEee
Confidence            99998887       7777666655555798999999999999999962         34468999999999  677778


Q ss_pred             CCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        519 KPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       519 ~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      .||.+...++.-..                             .  ++...+..+..++..|..+|..... ......+.
T Consensus       779 ~Pd~~~i~ei~l~s-----------------------------~--Gf~~a~~la~kiv~~~~l~~e~ls~-q~hydfgl  826 (2695)
T 4akg_A          779 SPQSGTIAEMILQI-----------------------------M--GFEDSKSLASKIVHFLELLSSKCSS-MNHYHFGL  826 (2695)
T ss_dssp             CCCHHHHHHHHHHH-----------------------------H--HCSSHHHHHHHHHHHHHHHHHHSCC-CTTCCCSH
T ss_pred             CCCHHHHHHHHHHh-----------------------------c--CCCchHHHHHHHHHHHHHHHHHhCc-CCcccccH
Confidence            88876554443221                             1  1344556778889999888875332 23344689


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11213        599 RNLLAILRLSTALARL  614 (621)
Q Consensus       599 R~leslirla~A~Akl  614 (621)
                      |.+.++++.|.+..+-
T Consensus       827 RalksvL~~ag~lkr~  842 (2695)
T 4akg_A          827 RTLKGVLRNCSPLISE  842 (2695)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999988765543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.11  E-value=1.3e-09  Score=119.23  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      +|++|||+++|+.+..++|+.+||+.             +..+.|+|+ |+..+.=...........|+++++|||- + 
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~-~-  360 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVM-I-  360 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEE-E-
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHhhcc-e-
Confidence            79999999999999999999999963             222333344 4410000000012223469999999994 3 


Q ss_pred             EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213        515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMS  594 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~  594 (621)
                      +....++.++-.++.++....                            ....+++++.++|.+...      .      
T Consensus       361 ~~~~~~~~~e~~~iL~~~~~~----------------------------~~~~~~~~~~~~i~~~a~------~------  400 (456)
T 2c9o_A          361 IRTMLYTPQEMKQIIKIRAQT----------------------------EGINISEEALNHLGEIGT------K------  400 (456)
T ss_dssp             EECCCCCHHHHHHHHHHHHHH----------------------------HTCCBCHHHHHHHHHHHH------H------
T ss_pred             eeCCCCCHHHHHHHHHHHHHH----------------------------hCCCCCHHHHHHHHHHcc------C------
Confidence            366666666655555544321                            135678888777766421      1      


Q ss_pred             ccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        595 YTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       595 ~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                       .++|....+++.|.+.|.+++++.|+
T Consensus       401 -g~~r~a~~ll~~a~~~A~~~~~~~v~  426 (456)
T 2c9o_A          401 -TTLRYSVQLLTPANLLAKINGKDSIE  426 (456)
T ss_dssp             -SCHHHHHHTHHHHHHHHHHTTCSSBC
T ss_pred             -CCHHHHHHHHHHHHHHHhhcCCCccC
Confidence             26898889999999999988888775

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.10  E-value=2.6e-10  Score=114.65  Aligned_cols=129  Identities=22%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~  446 (621)
                      ++||+||||||||++++++++.++...+ ..+...... ..+       .+...+ .+.+-.|   ..++++|||+|.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~-------~~~~~~-~~~~~~a~~~~~~il~iDeid~l~  117 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG-------VGASRV-RDMFEQAKKAAPCIIFIDEIDAVG  117 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCC-------CCHHHH-HHHHHHHHTTCSEEEEETTHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhh-------hhHHHH-HHHHHHHHHcCCeeehhhhhhhhc
Confidence            7999999999999999999998764433 222211110 000       000000 0111112   23699999998765


Q ss_pred             hhh--------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213        447 DAD--------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF  510 (621)
Q Consensus       447 ~~~--------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF  510 (621)
                      ...              ...++..|+.-           .-+.++.||||+|...             .+++++++  ||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~~-------------~l~~~l~r~~rf  173 (257)
T 1lv7_A          118 RQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRF  173 (257)
T ss_dssp             CCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTTSS
T ss_pred             cCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCEEEEEeeCCch-------------hCCHHHcCCCcC
Confidence            432              22344444321           1145678999999873             57889988  99


Q ss_pred             cEEEEecCCCChHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |. .+..+.|+.+...+|.++.+
T Consensus       174 ~~-~i~i~~P~~~~r~~il~~~~  195 (257)
T 1lv7_A          174 DR-QVVVGLPDVRGREQILKVHM  195 (257)
T ss_dssp             CE-EEECCCCCHHHHHHHHHHHH
T ss_pred             Ce-EEEeCCCCHHHHHHHHHHHH
Confidence            85 55667888888877777654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.09  E-value=4.3e-10  Score=121.53  Aligned_cols=133  Identities=22%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             CCCeeEecCCCCCChh------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeec-----CCCCCCCCCCCC
Q psy11213        433 DQGICCIDEFDKLPDA------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA-----NPAYGRYNPKRS  495 (621)
Q Consensus       433 d~gi~~IDEidk~~~~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~-----Np~~g~~~~~~~  495 (621)
                      .+|++++|||||+...            .|.+|+++||..+++. +.+ .... .++.+|||+     ||.         
T Consensus       250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~-~~d~-~~ilfI~~gaf~~~~~~---------  317 (444)
T 1g41_A          250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG-MVKT-DHILFIASGAFQVARPS---------  317 (444)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTE-EEEC-TTCEEEEEECCSSCCGG---------
T ss_pred             cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccc-eecC-CcEEEEeccccccCChh---------
Confidence            6789999999998643            5679999999877665 332 2222 336677775     543         


Q ss_pred             cccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHH
Q psy11213        496 IEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLT  573 (621)
Q Consensus       496 ~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~  573 (621)
                           ++-++|++||+.+ +..+..+.++-.+|+..-                 ....+++|.+.....  ...++++|.
T Consensus       318 -----dlipel~~R~~i~-i~l~~lt~~e~~~Il~~~-----------------~~~l~~q~~~~~~~~~~~l~~~~~al  374 (444)
T 1g41_A          318 -----DLIPELQGRLPIR-VELTALSAADFERILTEP-----------------HASLTEQYKALMATEGVNIAFTTDAV  374 (444)
T ss_dssp             -----GSCHHHHTTCCEE-EECCCCCHHHHHHHHHSS-----------------TTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             -----hcchHHhccccee-eeCCCCCHHHHHHHHHHH-----------------HHhHHHHHHHHhcccCceEEECHHHH
Confidence                 3558999999844 445666777766666310                 112456666554432  567899999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213        574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslir  606 (621)
                      +.|++.+.++......      +..|.|++++.
T Consensus       375 ~~i~~~a~~~~~~t~~------~GaR~L~~~ie  401 (444)
T 1g41_A          375 KKIAEAAFRVNEKTEN------IGARRLHTVME  401 (444)
T ss_dssp             HHHHHHHHHHHHHSCC------CGGGHHHHHHH
T ss_pred             HHHHHHHHHhccCCcc------CCchHHHHHHH
Confidence            9999987665332221      45777776665

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.00  E-value=7.7e-11  Score=119.18  Aligned_cols=132  Identities=25%  Similarity=0.278  Sum_probs=81.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+......-...+.+       .+... ..+.+-.|   ..+|++|||+|.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~-------~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~  117 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG-------LGASR-VRDLFETAKKQAPSIIFIDEIDAIGK  117 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS-------SCSSS-SSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc-------hHHHH-HHHHHHHHHhcCCeEEEEeChhhhcc
Confidence            69999999999999999999986554332211100000000       00000 01111112   248999999999865


Q ss_pred             h---------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213        448 A---------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF  510 (621)
Q Consensus       448 ~---------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF  510 (621)
                      .               .+..|+..|+..          ...+.++.||+|+|...             .|++++++  ||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~~-------------~ld~~l~r~~Rf  174 (268)
T 2r62_A          118 SRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRPE-------------ILDPALMRPGRF  174 (268)
T ss_dssp             ----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCCT-------------TSCGGGGSSSSS
T ss_pred             cccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCch-------------hcCHhHcCCCCC
Confidence            4               234555555531          01234578999999873             47889998  99


Q ss_pred             cEEEEecCCCChHHHHHHHHHHHh
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      +. .+....|+.++..++.++.+.
T Consensus       175 ~~-~i~i~~p~~~~r~~il~~~~~  197 (268)
T 2r62_A          175 DR-QVLVDKPDFNGRVEILKVHIK  197 (268)
T ss_dssp             CC-CCBCCCCCTTTHHHHHHHHTS
T ss_pred             Ce-EEEecCcCHHHHHHHHHHHHh
Confidence            84 455677888888888877653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.99  E-value=3.3e-10  Score=124.75  Aligned_cols=131  Identities=23%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeecC---CCeeEecCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLAD---QGICCIDEFDK  444 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlAd---~gi~~IDEidk  444 (621)
                      ..++||+||||||||++++++++.+...++.....    .+.     ....|+. ....+++-.|.   .+++||||+|.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~----~l~-----~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~  308 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM-----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDA  308 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHH----HHH-----TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEch----Hhh-----hhhcchhHHHHHHHHHHHHhcCCcEEEecchhh
Confidence            34799999999999999999999875444321100    000     0000100 00112233332   35999999977


Q ss_pred             CCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        445 LPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       445 ~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      +.+           ..++.|+..|+..           ..+.++.||||+|...             .|++++.+  ||+
T Consensus       309 l~~~~~~~~~~~~~~~~~~LL~~ld~~-----------~~~~~v~vIaaTn~~~-------------~Ld~al~r~gRf~  364 (489)
T 3hu3_A          309 IAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIVMAATNRPN-------------SIDPALRRFGRFD  364 (489)
T ss_dssp             HCBCTTSCCCHHHHHHHHHHHHHHHHS-----------CTTSCEEEEEEESCGG-------------GBCGGGGSTTSSC
T ss_pred             hccccccccchHHHHHHHHHHHHhhcc-----------ccCCceEEEEecCCcc-------------ccCHHHhCCCcCc
Confidence            654           4567788888742           1245689999999863             47899998  998


Q ss_pred             EEEEecCCCChHHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il  533 (621)
                      .. +....|+.+...+|.+..+
T Consensus       365 ~~-i~i~~P~~~eR~~IL~~~~  385 (489)
T 3hu3_A          365 RE-VDIGIPDATGRLEILQIHT  385 (489)
T ss_dssp             EE-EECCCCCHHHHHHHHHHHT
T ss_pred             eE-EEeCCCCHHHHHHHHHHHH
Confidence            54 6668888888888887664

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.98  E-value=6e-10  Score=107.81  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      |++|+|+||||||++++.+++.+...     .+.... ....+..  ..... ...+ ........+.+++++|||++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l  114 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA-SDERGID--VVRHK-IKEF-ARTAPIGGAPFKIIFLDEADAL  114 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET-TCTTCHH--HHHHH-HHHH-HTSCCSTTCSCEEEEEETGGGS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc-ccccChH--HHHHH-HHHH-hcccCCCccCceEEEEeChhhc
Confidence            79999999999999999998864211     111000 0000000  00000 0000 0000111245689999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      .+..+..|+..++..             +..+.+|+++|...             .+.+++.+||.  .+....++.++-
T Consensus       115 ~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~-------------~~~~~l~~r~~--~i~~~~~~~~~~  166 (226)
T 2chg_A          115 TADAQAALRRTMEMY-------------SKSCRFILSCNYVS-------------RIIEPIQSRCA--VFRFKPVPKEAM  166 (226)
T ss_dssp             CHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE--EEECCCCCHHHH
T ss_pred             CHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-------------hcCHHHHHhCc--eeecCCCCHHHH
Confidence            999999999998762             34567888888652             47899999995  455566666655


Q ss_pred             HHHHHHHH
Q psy11213        526 LKLAQHIT  533 (621)
Q Consensus       526 ~~ia~~il  533 (621)
                      ..+..+.+
T Consensus       167 ~~~l~~~~  174 (226)
T 2chg_A          167 KKRLLEIC  174 (226)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.98  E-value=1.4e-09  Score=112.96  Aligned_cols=128  Identities=18%  Similarity=0.262  Sum_probs=83.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC-hhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP-DAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~-~~~  449 (621)
                      .+|+.||||||||++++++++.+...++....  +..+.  ...++. -.++.  ...-.....++++|||++.+. .+.
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~--~~~~~--~~i~~~-~~~~~--~~~~~~~~~~vliiDEi~~l~~~~~  122 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNG--SDCKI--DFVRGP-LTNFA--SAASFDGRQKVIVIDEFDRSGLAES  122 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHTTEEEEEEET--TTCCH--HHHHTH-HHHHH--HBCCCSSCEEEEEEESCCCGGGHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc--cccCH--HHHHHH-HHHHH--hhcccCCCCeEEEEECCcccCcHHH
Confidence            45666779999999999999987544432211  11110  000000 00000  000011256899999999999 899


Q ss_pred             hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHH
Q psy11213        450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLA  529 (621)
Q Consensus       450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia  529 (621)
                      ++.|+..|+..             +..+.+|+|+|+..             .++++|.|||.  .+....|+.++..++.
T Consensus       123 ~~~L~~~le~~-------------~~~~~iI~~~n~~~-------------~l~~~l~sR~~--~i~~~~~~~~e~~~il  174 (324)
T 3u61_B          123 QRHLRSFMEAY-------------SSNCSIIITANNID-------------GIIKPLQSRCR--VITFGQPTDEDKIEMM  174 (324)
T ss_dssp             HHHHHHHHHHH-------------GGGCEEEEEESSGG-------------GSCTTHHHHSE--EEECCCCCHHHHHHHH
T ss_pred             HHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccCHHHHhhCc--EEEeCCCCHHHHHHHH
Confidence            99999999863             34578899999863             58899999994  4667788877766665


Q ss_pred             HHHH
Q psy11213        530 QHIT  533 (621)
Q Consensus       530 ~~il  533 (621)
                      +.++
T Consensus       175 ~~~~  178 (324)
T 3u61_B          175 KQMI  178 (324)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.96  E-value=5.8e-10  Score=115.19  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=84.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||++++++++.+....+....    ..+.... ... +..  ...+.+-.|   ..+|++|||+|.+..
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~----~~l~~~~-~g~-~~~--~~~~~f~~a~~~~p~il~iDEid~l~~  122 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANECQANFISIKG----PELLTMW-FGE-SEA--NVREIFDKARQAAPCVLFFDELDSIAK  122 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCEEEEECH----HHHHHHH-HTT-CTT--HHHHHHHHHHHTCSEEEEECSTTHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh----HHHHhhh-cCc-hHH--HHHHHHHHHHhcCCeEEEEEChHHHhh
Confidence            79999999999999999999987644432110    0010000 000 000  000111112   247999999997654


Q ss_pred             h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      .              ..+.|+..|+.-           .-+.++.||||+|...             .|++++++  |||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~lL~~l~~~-----------~~~~~v~vi~atn~~~-------------~ld~al~r~gRf~  178 (301)
T 3cf0_A          123 ARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVFIIGATNRPD-------------IIDPAILRPGRLD  178 (301)
T ss_dssp             HHTTTTCCSSCSCCHHHHHHHHHHHSS-----------CTTSSEEEEEEESCGG-------------GSCGGGGSTTSSC
T ss_pred             ccCCCcCCcchHHHHHHHHHHHHhhcc-----------cCCCCEEEEEecCCcc-------------ccChHHhcCCccc
Confidence            3              246677777631           1135689999999863             58899999  998


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhh
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~  535 (621)
                       ..+..+.|+.+...+|.++.+..
T Consensus       179 -~~i~i~~p~~~~r~~il~~~l~~  201 (301)
T 3cf0_A          179 -QLIYIPLPDEKSRVAILKANLRK  201 (301)
T ss_dssp             -EEEECCCCCHHHHHHHHHHHHTT
T ss_pred             -eEEecCCcCHHHHHHHHHHHHcc
Confidence             45666889999888888887753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.94  E-value=1.8e-09  Score=118.08  Aligned_cols=128  Identities=26%  Similarity=0.276  Sum_probs=81.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCc--cccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSS--GVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s--~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      ++||+||||||||+|+++++..+...++.. +....  ..|.          +.-. ..+.+..|   ..+|+||||+|.
T Consensus        51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~----------~~~~-~r~lf~~A~~~~p~ILfIDEid~  119 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGV----------GAAR-VRDLFAQAKAHAPCIVFIDEIDA  119 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTH----------HHHH-HHHHHHHHHHTCSEEEEEETGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcc----------cHHH-HHHHHHHHHhcCCCEEEEechhh
Confidence            699999999999999999999865544321 11100  0010          0000 00112222   246999999999


Q ss_pred             CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...              .++.|+..|+.-           .-+.++.||||+|...             .|++++++  
T Consensus       120 l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTn~~~-------------~Ld~allR~g  175 (476)
T 2ce7_A          120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGIIVMAATNRPD-------------ILDPALLRPG  175 (476)
T ss_dssp             TCCC---------CHHHHHHHHHHHHHHHS-----------CGGGTEEEEEEESCGG-------------GSCGGGGSTT
T ss_pred             hhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCEEEEEecCChh-------------hhchhhcccC
Confidence            7543              235566666521           0134578999999863             47889987  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      |||. .+.++.|+.+...+|.++.+.
T Consensus       176 RFd~-~i~i~~Pd~~~R~~Il~~~~~  200 (476)
T 2ce7_A          176 RFDK-KIVVDPPDMLGRKKILEIHTR  200 (476)
T ss_dssp             SSCE-EEECCCCCHHHHHHHHHHHHT
T ss_pred             ccee-EeecCCCCHHHHHHHHHHHHH
Confidence            9995 455678998888888776553

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.93  E-value=3.7e-09  Score=110.67  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCcc-ccceEEEeecCcccceeee---------ccceeecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSG-VGLTAAVMKDPITNEMVLE---------GGALVLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~-~gLta~~~~~~~~g~~~l~---------~GalvlAd~gi  436 (621)
                      |+||+||||||||++++.+++.+...    ........+. .|..  ..++. ...+...         .+....++.+|
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v  136 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS--IVREK-VKNFARLTVSKPSKHDLENYPCPPYKI  136 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH--HHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH--HHHHH-HHHHhhhcccccchhhcccCCCCCceE
Confidence            79999999999999999999885321    0010111111 0000  00000 0000000         00111245679


Q ss_pred             eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213        437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI  516 (621)
Q Consensus       437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~  516 (621)
                      ++|||++.+.+..++.|+++|++.             +..+.+|.++|...             .+.+++.+||.  .+.
T Consensus       137 liiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sR~~--~i~  188 (353)
T 1sxj_D          137 IILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVT-------------RIIDPLASQCS--KFR  188 (353)
T ss_dssp             EEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHHSE--EEE
T ss_pred             EEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchh-------------hCcchhhccCc--eEE
Confidence            999999999999999999999863             23455666777552             48899999995  445


Q ss_pred             cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      ...++.++...+..+++...         ...++.+.+..+..++.
T Consensus       189 ~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~l~~l~~~~~  225 (353)
T 1sxj_D          189 FKALDASNAIDRLRFISEQE---------NVKCDDGVLERILDISA  225 (353)
T ss_dssp             CCCCCHHHHHHHHHHHHHTT---------TCCCCHHHHHHHHHHTS
T ss_pred             eCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC
Confidence            56666666666666554311         12356666666555543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.92  E-value=6.8e-09  Score=120.62  Aligned_cols=177  Identities=18%  Similarity=0.195  Sum_probs=106.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeec----cceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEG----GALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~----GalvlAd~gi~~IDEidk~  445 (621)
                      |+||+||||||||++++.+++.+.+...-. ..+..-..+...   ....|++.-.-    +.+..+.++|+|||    .
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g---~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~  275 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A  275 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----C
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---ccccchHHHHHHHHHHHHHhcCCEEEEEc----C
Confidence            999999999999999999999863211000 000000000000   00012221110    11112357899999    4


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ..+.++.|+.+|+.+               .+.+|+|+|+..        +...+.++++|.+||.  .+.++.|+.+..
T Consensus       276 ~~~~~~~L~~~l~~~---------------~v~~I~at~~~~--------~~~~~~~d~al~rRf~--~i~v~~p~~~~~  330 (758)
T 3pxi_A          276 AIDASNILKPSLARG---------------ELQCIGATTLDE--------YRKYIEKDAALERRFQ--PIQVDQPSVDES  330 (758)
T ss_dssp             --------CCCTTSS---------------SCEEEEECCTTT--------THHHHTTCSHHHHSEE--EEECCCCCHHHH
T ss_pred             chhHHHHHHHHHhcC---------------CEEEEeCCChHH--------HHHHhhccHHHHhhCc--EEEeCCCCHHHH
Confidence            445667787877743               367899999873        3344578999999994  477889999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213        526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR  584 (621)
Q Consensus       526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR  584 (621)
                      ..|.+++...+...     ....++.+.+.....++.++  ...+++.+.+.+.......+
T Consensus       331 ~~il~~~~~~~~~~-----~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~  386 (758)
T 3pxi_A          331 IQILQGLRDRYEAH-----HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR  386 (758)
T ss_dssp             HHHHHHTTTTSGGG-----SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence            99988765432211     22357889999999988876  56778888888777654444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.87  E-value=4.5e-10  Score=114.01  Aligned_cols=123  Identities=10%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCCCC--
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFDKL--  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEidk~--  445 (621)
                      .++||+||||||||++++++++......+......   .+.+..... ..+.  ..++  ....+.+++++|||++.+  
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~-~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~  138 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETA-KCQAMKKIFD--DAYKSQLSCVVVDDIERLLD  138 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHH-HHHHHHHHHH--HHHTSSEEEEEECCHHHHTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHH-HHHHHHHHHH--HHHhcCCcEEEEEChhhhhc
Confidence            38999999999999999999998554332211100   011100000 0000  0000  001134689999999987  


Q ss_pred             ----ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH-hHhccccEEEEec
Q psy11213        446 ----PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA-ALLSRFDLLWLIQ  517 (621)
Q Consensus       446 ----~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~-aLlsRFDli~~~~  517 (621)
                          .+..+..+++++...      -+.....+.++.||+|+|...             .+++ .+.+||+..+.+.
T Consensus       139 ~~~~~~~~~~~~l~~L~~~------~~~~~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~p  196 (272)
T 1d2n_A          139 YVPIGPRFSNLVLQALLVL------LKKAPPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHVP  196 (272)
T ss_dssp             CBTTTTBCCHHHHHHHHHH------TTCCCSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEECC
T ss_pred             cCCCChhHHHHHHHHHHHH------hcCccCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcCC
Confidence                333333444443321      000111244578999999762             2344 5789998766553

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.86  E-value=2.9e-08  Score=97.56  Aligned_cols=169  Identities=18%  Similarity=0.182  Sum_probs=97.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      -+++|+||||||||++++.+++.+...    .+......     .     +....  .+.    .+...++++|||++.+
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-----~-----~~~~~--~~~----~~~~~~vliiDe~~~~  116 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH-----A-----SISTA--LLE----GLEQFDLICIDDVDAV  116 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG-----G-----GSCGG--GGT----TGGGSSEEEEETGGGG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH-----H-----HHHHH--HHH----hccCCCEEEEeccccc
Confidence            389999999999999999999875431    12111000     0     00000  000    1245689999999999


Q ss_pred             Chhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCCh
Q psy11213        446 PDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDR  522 (621)
Q Consensus       446 ~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~  522 (621)
                      ....  +..|+..++...    .       .....+|.++|.....+         ..+.+++.+||+ -..+....++.
T Consensus       117 ~~~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~---------~~~~~~l~~r~~~~~~i~l~~~~~  176 (242)
T 3bos_A          117 AGHPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEA---------GFVLPDLVSRMHWGLTYQLQPMMD  176 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTT---------TCCCHHHHHHHHHSEEEECCCCCG
T ss_pred             cCCHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHH---------HHhhhhhhhHhhcCceEEeCCCCH
Confidence            8766  778888876421    0       01123566666432211         124589999994 13344566666


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213        523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL  602 (621)
Q Consensus       523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le  602 (621)
                      ++..+++.+.+..                            .+..+++++.+.|.+.+              .-++|.+.
T Consensus       177 ~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~l~~~~--------------~g~~r~l~  214 (242)
T 3bos_A          177 DEKLAALQRRAAM----------------------------RGLQLPEDVGRFLLNRM--------------ARDLRTLF  214 (242)
T ss_dssp             GGHHHHHHHHHHH----------------------------TTCCCCHHHHHHHHHHT--------------TTCHHHHH
T ss_pred             HHHHHHHHHHHHH----------------------------cCCCCCHHHHHHHHHHc--------------cCCHHHHH
Confidence            6666665554321                            12456666666655421              12467777


Q ss_pred             HHHHHHHHHHHhcC
Q psy11213        603 AILRLSTALARLRL  616 (621)
Q Consensus       603 slirla~A~Akl~l  616 (621)
                      .+++.+.+.|....
T Consensus       215 ~~l~~~~~~a~~~~  228 (242)
T 3bos_A          215 DVLDRLDKASMVHQ  228 (242)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            77776666664443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.86  E-value=1.4e-08  Score=104.54  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=81.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |+||+||||||||++++.+++.+..      .+........+.+..    ++. -..+. ...++..+..++++|||++.
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~-~~~~~~~~~~~vliiDe~~~  113 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV----RHK-IKEFA-RTAPIGGAPFKIIFLDEADA  113 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS----SHH-HHHHH-HSCCSSSCCCEEEEEETGGG
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH----HHH-HHHHH-hcCCCCCCCceEEEEeCCCc
Confidence            7999999999999999999987411      111111110000000    000 00000 01111124568999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      ++.+.++.|+..|++             .+..+.+|+++|...             .+.+++.+||.  .+....++.++
T Consensus       114 l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~-------------~l~~~l~sr~~--~i~~~~~~~~~  165 (319)
T 2chq_A          114 LTADAQAALRRTMEM-------------YSKSCRFILSCNYVS-------------RIIEPIQSRCA--VFRFKPVPKEA  165 (319)
T ss_dssp             SCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG-------------GSCHHHHTTCE--EEECCCCCHHH
T ss_pred             CCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh-------------hcchHHHhhCe--EEEecCCCHHH
Confidence            999999999999986             245677888888652             57899999994  55566677666


Q ss_pred             HHHHHHHHH
Q psy11213        525 DLKLAQHIT  533 (621)
Q Consensus       525 d~~ia~~il  533 (621)
                      -..+..+++
T Consensus       166 ~~~~l~~~~  174 (319)
T 2chq_A          166 MKKRLLEIC  174 (319)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.84  E-value=5.6e-09  Score=114.90  Aligned_cols=127  Identities=24%  Similarity=0.274  Sum_probs=77.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeee-ccceeec---CCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLE-GGALVLA---DQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~-~GalvlA---d~gi~~IDEidk~  445 (621)
                      ++||+||||||||+|+++++..+....+. ++.....          ...|...-. ...+-.|   ..++++|||+|.+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~----------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l  135 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE----------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV  135 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS----------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH----------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHH
Confidence            59999999999999999999987644332 2211100          001110000 0111112   2379999999886


Q ss_pred             Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      ...              ..+.++..|+...           .+....++||+|...             .|++++++  |
T Consensus       136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-------------~LD~aLlr~gR  191 (499)
T 2dhr_A          136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR  191 (499)
T ss_dssp             CCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-------------GSCTTTSSTTS
T ss_pred             HHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-------------hcCcccccccc
Confidence            431              1234555554321           133478899999762             38899998  8


Q ss_pred             ccEEEEecCCCChHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~i  532 (621)
                      ||. .+.++.|+.+...+|.++.
T Consensus       192 fdr-~i~i~~Pd~~~R~~IL~~~  213 (499)
T 2dhr_A          192 FDR-QIAIDAPDVKGREQILRIH  213 (499)
T ss_dssp             SCC-EEECCCCCHHHHHHHHHHT
T ss_pred             cce-EEecCCCCHHHHHHHHHHH
Confidence            995 5666889988877776543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.82  E-value=7.6e-09  Score=106.92  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=89.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----E-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----Q-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |+||+||||||||++++.+++.+...     . ...+..  ..|..  ..++ ...++ ...+.+..+.+++++|||++.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~--~~~~~--~~~~-~~~~~-~~~~~~~~~~~~vliiDe~~~  121 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGIN--VIRE-KVKEF-ARTKPIGGASFKIIFLDEADA  121 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC--HHHHH--TTHH-HHHHH-HHSCCGGGCSCEEEEEETGGG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc--cCchH--HHHH-HHHHH-HhhCCcCCCCCeEEEEeCCCc
Confidence            79999999999999999999874211     1 111100  00000  0000 00011 012223235678999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      ++++.++.|+..|++.             +..+.+|.++|...             .+.+++.+||.  .+....++.++
T Consensus       122 l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~-------------~l~~~l~sr~~--~~~~~~l~~~~  173 (327)
T 1iqp_A          122 LTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA--IFRFRPLRDED  173 (327)
T ss_dssp             SCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHTEE--EEECCCCCHHH
T ss_pred             CCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc-------------ccCHHHHhhCc--EEEecCCCHHH
Confidence            9999999999999863             33456777777652             47899999995  44555566665


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        525 DLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       525 d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      -..+..+++...         ...++.+.+.....++
T Consensus       174 ~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~  201 (327)
T 1iqp_A          174 IAKRLRYIAENE---------GLELTEEGLQAILYIA  201 (327)
T ss_dssp             HHHHHHHHHHTT---------TCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---------CCCCCHHHHHHHHHHC
Confidence            555555544311         1125555555555544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.81  E-value=3.4e-09  Score=122.26  Aligned_cols=129  Identities=24%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeec---CCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLA---DQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlA---d~gi~~IDEidk~  445 (621)
                      +|||+||||||||+|+|++|+.+....+.....    .+.     ....|+  ..++ ..+-.|   ..+|+||||+|.+
T Consensus       240 GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~----~l~-----sk~~gese~~lr-~lF~~A~~~~PsIIfIDEiDal  309 (806)
T 3cf2_A          240 GILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM-----SKLAGESESNLR-KAFEEAEKNAPAIIFIDELDAI  309 (806)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHH----HHH-----SSCTTHHHHHHH-HHHHHHTTSCSEEEEEESGGGT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhH----Hhh-----cccchHHHHHHH-HHHHHHHHcCCeEEEEehhccc
Confidence            799999999999999999999876655432100    000     000111  0000 011112   2579999999987


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL  512 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl  512 (621)
                      .+.           ..+.|+..|+.-.           -+.++.||||+|...             .|+++|++  ||| 
T Consensus       310 ~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd-  364 (806)
T 3cf2_A          310 APKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFD-  364 (806)
T ss_dssp             CCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTT-------------TSCTTTTSTTSSC-
T ss_pred             ccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChh-------------hcCHHHhCCcccc-
Confidence            542           1234555554310           123578999999774             58999998  999 


Q ss_pred             EEEecCCCChHHHHHHHHHHHh
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ..+.++.|+.....+|.+..+.
T Consensus       365 ~~I~i~~Pd~~~R~~IL~~~l~  386 (806)
T 3cf2_A          365 REVDIGIPDATGRLEILQIHTK  386 (806)
T ss_dssp             EEEECCCCCHHHHHHHHHHTCS
T ss_pred             eEEecCCCCHHHHHHHHHHHhc
Confidence            5566789999999998876543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.80  E-value=6.8e-09  Score=120.57  Aligned_cols=174  Identities=16%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCccccee--ee--ccceeecCCCe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMV--LE--GGALVLADQGI  436 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~--l~--~GalvlAd~gi  436 (621)
                      |+||+|+||||||++++.+++.+...          ++....+.    +.+.   ....|++.  ++  -..+..+.++|
T Consensus       209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~----l~~~---~~~~g~~e~~l~~~~~~~~~~~~~i  281 (758)
T 1r6b_X          209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----LLAG---TKYRGDFEKRFKALLKQLEQDTNSI  281 (758)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------CC---CCCSSCHHHHHHHHHHHHSSSSCEE
T ss_pred             CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH----Hhcc---ccccchHHHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999875321          11111000    1100   00112111  00  00111234689


Q ss_pred             eEecCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        437 CCIDEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       437 ~~IDEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      +||||++.+.         .+..+.|..+++.               .++.+|+|+|+..        +...+.++++|.
T Consensus       282 L~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~---------------~~~~~I~at~~~~--------~~~~~~~d~aL~  338 (758)
T 1r6b_X          282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---------------GKIRVIGSTTYQE--------FSNIFEKDRALA  338 (758)
T ss_dssp             EEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS---------------CCCEEEEEECHHH--------HHCCCCCTTSSG
T ss_pred             EEEechHHHhhcCCCCcchHHHHHHHHHHHhC---------------CCeEEEEEeCchH--------HhhhhhcCHHHH
Confidence            9999999982         2223344455543               2467888998752        223356789999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~  581 (621)
                      +||+  .+.++.|+.+....+.+.+.......     ....++.+.+......+..+  ...+++.+.+.+.+...
T Consensus       339 ~Rf~--~i~v~~p~~~e~~~il~~l~~~~~~~-----~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~  407 (758)
T 1r6b_X          339 RRFQ--KIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA  407 (758)
T ss_dssp             GGEE--EEECCCCCHHHHHHHHHHHHHHHHHH-----HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred             hCce--EEEcCCCCHHHHHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHH
Confidence            9996  47788999998888888776532110     12346778888888777664  56678888877765543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.78  E-value=3.5e-08  Score=96.31  Aligned_cols=132  Identities=21%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC------------CccccceEEEeecCcc--cc--e--eeec-c-cee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG------------SSGVGLTAAVMKDPIT--NE--M--VLEG-G-ALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~------------~s~~gLta~~~~~~~~--g~--~--~l~~-G-alv  430 (621)
                      .++|+|+||+|||++++.+++.+..........            .....+..   .+...  +.  .  .++. . ...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  123 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPA  123 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE---EETTCGGGHHHHHHHHHSCCCSCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE---ecCcccccHHHHHHHHHHhhhchh
Confidence            689999999999999999988754321100000            00000110   00000  00  0  0000 0 001


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .....+++|||++.+.+..+..|+..|++.             +..+.+|+++|...             .+.+++++|+
T Consensus       124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~-------------~~~~~l~~r~  177 (250)
T 1njg_A          124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC  177 (250)
T ss_dssp             SSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS
T ss_pred             cCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChH-------------hCCHHHHHHh
Confidence            123579999999999999999999998752             34567788887542             4788999998


Q ss_pred             cEEEEecCCCChHHHHHHHHHHH
Q psy11213        511 DLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       511 Dli~~~~d~~d~~~d~~ia~~il  533 (621)
                        ..+....++.++-.++..+.+
T Consensus       178 --~~i~l~~l~~~e~~~~l~~~~  198 (250)
T 1njg_A          178 --LQFHLKALDVEQIRHQLEHIL  198 (250)
T ss_dssp             --EEEECCCCCHHHHHHHHHHHH
T ss_pred             --hhccCCCCCHHHHHHHHHHHH
Confidence              455566677766666665554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.75  E-value=1.1e-08  Score=102.54  Aligned_cols=128  Identities=24%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeecc-ceeec---CCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGG-ALVLA---DQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~G-alvlA---d~gi~~IDEidk~  445 (621)
                      +++|+||||||||+|+++++..+....+.. +..     +.     +...+...-.-+ .+-.+   ...++++||++.+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l  120 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----FV-----EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV  120 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----HH-----HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH-----HH-----HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence            599999999999999999999865333221 100     00     000010000000 01111   1368999999765


Q ss_pred             Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      ...              ..+.++..|+.+.           .+....++|++|...             .|++++++  |
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r  176 (254)
T 1ixz_A          121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR  176 (254)
T ss_dssp             HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred             hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence            211              1123444443211           122356788888652             48899998  9


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      ||. .+..+.|+.+...+|.+...
T Consensus       177 f~~-~i~i~~p~~~~r~~il~~~~  199 (254)
T 1ixz_A          177 FDR-QIAIDAPDVKGREQILRIHA  199 (254)
T ss_dssp             SCE-EEECCSCCHHHHHHHHHHHH
T ss_pred             CCe-EEeeCCcCHHHHHHHHHHHH
Confidence            996 56668889888888776543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.74  E-value=1.4e-08  Score=119.56  Aligned_cols=177  Identities=18%  Similarity=0.225  Sum_probs=100.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeee-ccceee---c-CCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLE-GGALVL---A-DQG  435 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~-~Galvl---A-d~g  435 (621)
                      |+||+|+||||||++++.+++.+..          .++....+    .+.+..   ...|++.-. ...+-.   . ...
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~~  265 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLAGA---KYRGEFEERLKAVIQEVVQSQGEV  265 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------CHHHHHHHHHHHHHTTCSSE
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----HhhccC---ccchHHHHHHHHHHHHHHhcCCCe
Confidence            8999999999999999999987532          11111100    011100   001111100 000000   1 235


Q ss_pred             eeEecCCCCCC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        436 ICCIDEFDKLP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       436 i~~IDEidk~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      |+||||++.+.        .+..+.|..+|+.+               ++.+|+|+|+..        ... +.++++|.
T Consensus       266 iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---------------~i~~I~at~~~~--------~~~-~~~d~aL~  321 (854)
T 1qvr_A          266 ILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---------------ELRLIGATTLDE--------YRE-IEKDPALE  321 (854)
T ss_dssp             EEEECCC-------------------HHHHHTT---------------CCCEEEEECHHH--------HHH-HTTCTTTC
T ss_pred             EEEEecHHHHhccCCccchHHHHHHHHHHHhCC---------------CeEEEEecCchH--------Hhh-hccCHHHH
Confidence            99999999986        33344566666432               356888888752        222 56789999


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK  585 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~  585 (621)
                      +||+.  +.++.|+.+....+.+.++..+...     ....++.+.+...+.++..+  ...+++.+.+.+.+.-...|.
T Consensus       322 rRf~~--i~l~~p~~~e~~~iL~~~~~~~~~~-----~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~  394 (854)
T 1qvr_A          322 RRFQP--VYVDEPTVEETISILRGLKEKYEVH-----HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM  394 (854)
T ss_dssp             SCCCC--EEECCCCHHHHHHHHHHHHHHHHHH-----TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred             hCCce--EEeCCCCHHHHHHHHHhhhhhhhhh-----cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence            99985  5668889988888888776543211     12357788888888888765  455677787777666554443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.74  E-value=2.6e-09  Score=123.25  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=76.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .+||+||||||||.+++++|..+....+.....   +..+|-+...++           -.+-.|   ..+|+||||+|.
T Consensus       513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr-----------~lF~~Ar~~~P~IifiDEiDs  581 (806)
T 3cf2_A          513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR-----------EIFDKARQAAPCVLFFDELDS  581 (806)
T ss_dssp             CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHH-----------HHHHHHHTTCSEEEECSCGGG
T ss_pred             eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHH-----------HHHHHHHHcCCceeechhhhH
Confidence            799999999999999999999977665532110   011111110000           011112   358999999998


Q ss_pred             CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +-..              ..+.|+..|+.-         .  -..++.||||+|...             .|++|+++  
T Consensus       582 l~~~R~~~~~~~~~~~~rv~~~lL~~mdg~---------~--~~~~V~vi~aTN~p~-------------~lD~AllRpg  637 (806)
T 3cf2_A          582 IAKARGGNIGDGGGAADRVINQILTEMDGM---------S--TKKNVFIIGATNRPD-------------IIDPAILRPG  637 (806)
T ss_dssp             CC--------------CHHHHHHHHHHHSS---------C--SSSSEEEECC-CCSS-------------SSCHHHHSTT
T ss_pred             HhhccCCCCCCCchHHHHHHHHHHHHHhCC---------C--CCCCEEEEEeCCCch-------------hCCHhHcCCC
Confidence            6432              234566666531         1  134578999999874             69999999  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHH
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      |||-.+ .++.|+.+...+|.+..+
T Consensus       638 Rfd~~i-~v~lPd~~~R~~il~~~l  661 (806)
T 3cf2_A          638 RLDQLI-YIPLPDEKSRVAILKANL  661 (806)
T ss_dssp             TSCCEE-EC-----CHHHHTTTTTS
T ss_pred             cceEEE-EECCcCHHHHHHHHHHHh
Confidence            999554 568899888887776544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.72  E-value=5.2e-08  Score=125.33  Aligned_cols=188  Identities=17%  Similarity=0.216  Sum_probs=126.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      .....+.||+|||||.+++.+|+.+.+.+++  +..+.....+          |.  +-.|+.  ..|+.+|+||||++.
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g~--i~~G~~--~~GaW~cfDEfNrl~  669 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------SR--IFVGLC--QCGAWGCFDEFNRLE  669 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------HH--HHHHHH--HHTCEEEEETTTSSC
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------HH--HHhhHh--hcCcEEEehhhhcCC
Confidence            3456799999999999999999999887654  3332221100          11  112322  247889999999999


Q ss_pred             hhhhhhhHhhhc---------ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213        447 DADRTAIHEVME---------QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ  517 (621)
Q Consensus       447 ~~~~~~L~eame---------~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~  517 (621)
                      .+..+.+.+.+.         ..++.+. .|....++..|.|++|+||.         +.+..+||++|.+||  ..+..
T Consensus       670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~-~G~~i~l~~~~~vfiTmNpg---------Y~gr~eLP~nLk~lF--r~v~m  737 (3245)
T 3vkg_A          670 ERILSAVSQQIQTIQVALKENSKEVELL-GGKNISLHQDMGIFVTMNPG---------YAGRSNLPDNLKKLF--RSMAM  737 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCC---------GGGCCCSCHHHHTTE--EEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEec-CCCEEeecCCeEEEEEeCCC---------ccCcccChHHHHhhc--EEEEE
Confidence            999998877665         3455552 27788999999999999996         455568999999999  67777


Q ss_pred             CCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213        518 DKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS  597 (621)
Q Consensus       518 d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t  597 (621)
                      ..||.+...+|.-.-                             .  +-.-....+.+++..|.-.+..-.. ......+
T Consensus       738 ~~Pd~~~i~ei~L~s-----------------------------~--Gf~~a~~La~k~~~~~~l~~e~LS~-Q~HYDfG  785 (3245)
T 3vkg_A          738 IKPDREMIAQVMLYS-----------------------------Q--GFKTAEVLAGKIVPLFKLCQEQLSA-QSHYDFG  785 (3245)
T ss_dssp             CSCCHHHHHHHHHHT-----------------------------T--TCSCHHHHHHHHHHHHHHHHHSSCC-CTTCCCS
T ss_pred             eCCCHHHHHHHHHHH-----------------------------c--ccchHHHHHHHHHHHHHHHHHHhCC-CCCCCCC
Confidence            888876554443211                             1  0111245667778888766654222 2334478


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11213        598 ARNLLAILRLSTALARL  614 (621)
Q Consensus       598 ~R~leslirla~A~Akl  614 (621)
                      .|++.++++.|-+.-|-
T Consensus       786 LRalKsVL~~AG~lkr~  802 (3245)
T 3vkg_A          786 LRALKSVLVSAGGIKRK  802 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            89999999988665443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.72  E-value=1.8e-08  Score=109.54  Aligned_cols=176  Identities=16%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc------EEecCCCCccccceEEEeecCcccceeeeccceeec-CCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS------QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA-DQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA-d~gi~~IDEid  443 (621)
                      +++|+|+||+|||+|++++++.+.+.      +|.+...... .+.... .......+     .-... ...+++|||++
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~-~~~~~~~~-----~~~~~~~~~vL~IDEi~  204 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEF-----REKYRKKVDILLIDDVQ  204 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHH-HTTCHHHH-----HHHHTTTCSEEEEECGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HcccHHHH-----HHHhcCCCCEEEEeCcc
Confidence            89999999999999999999875321      2221110000 000000 00000000     00012 56899999999


Q ss_pred             CCCh--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCC
Q psy11213        444 KLPD--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDK  519 (621)
Q Consensus       444 k~~~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~  519 (621)
                      .+..  ..+..++..|+.-.    ..|       ...|+++.||..          +-..+.++|++||+  ++ +....
T Consensus       205 ~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~----------~l~~l~~~L~sR~~~g~~-i~l~~  262 (440)
T 2z4s_A          205 FLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQ----------KLSEFQDRLVSRFQMGLV-AKLEP  262 (440)
T ss_dssp             GGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGG----------GCSSCCHHHHHHHHSSBC-CBCCC
T ss_pred             cccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHH----------HHHHHHHHHHhhccCCeE-EEeCC
Confidence            9886  56777877775421    011       134455555432          11248899999995  33 34466


Q ss_pred             CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213        520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR  599 (621)
Q Consensus       520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R  599 (621)
                      |+.+....+.++.+.                            ..+..+++++.++|....              .-++|
T Consensus       263 p~~e~r~~iL~~~~~----------------------------~~~~~i~~e~l~~la~~~--------------~gn~R  300 (440)
T 2z4s_A          263 PDEETRKSIARKMLE----------------------------IEHGELPEEVLNFVAENV--------------DDNLR  300 (440)
T ss_dssp             CCHHHHHHHHHHHHH----------------------------HHTCCCCTTHHHHHHHHC--------------CSCHH
T ss_pred             CCHHHHHHHHHHHHH----------------------------HcCCCCCHHHHHHHHHhc--------------CCCHH
Confidence            666665555544332                            113567777777766421              13689


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q psy11213        600 NLLAILRLSTALARLRLC  617 (621)
Q Consensus       600 ~leslirla~A~Akl~lr  617 (621)
                      .++.+++.+.+.|....+
T Consensus       301 ~l~~~L~~~~~~a~~~~~  318 (440)
T 2z4s_A          301 RLRGAIIKLLVYKETTGK  318 (440)
T ss_dssp             HHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            999999888888877654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.71  E-value=1.8e-08  Score=104.75  Aligned_cols=134  Identities=18%  Similarity=0.259  Sum_probs=74.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      +++|+||||||||+|++++++.+.+.    ++.+..... ..+.... .......+  .   -...+.++++|||++.+.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~~~~~~~--~---~~~~~~~vL~iDEi~~l~  111 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-QAMVEHL-KKGTINEF--R---NMYKSVDLLLLDDVQFLS  111 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-HHHHHHH-HHTCHHHH--H---HHHHTCSEEEEECGGGGT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHH-HcCcHHHH--H---HHhcCCCEEEEcCccccc
Confidence            89999999999999999999876321    222110000 0000000 00000000  0   001347899999999988


Q ss_pred             h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCCCCh
Q psy11213        447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDKPDR  522 (621)
Q Consensus       447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~~d~  522 (621)
                      .  ..+..++..++...    ..|       ...|+++.|+..          +-..+.++|++||+  +++.+ .. +.
T Consensus       112 ~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~----------~l~~l~~~L~sR~~~~~~i~l-~~-~~  168 (324)
T 1l8q_A          112 GKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ----------KLDGVSDRLVSRFEGGILVEI-EL-DN  168 (324)
T ss_dssp             TCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG----------GCTTSCHHHHHHHHTSEEEEC-CC-CH
T ss_pred             CChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH----------HHHHhhhHhhhcccCceEEEe-CC-CH
Confidence            6  55667777665321    011       124555555532          11258899999996  45444 44 77


Q ss_pred             HHHHHHHHHHHh
Q psy11213        523 DNDLKLAQHITY  534 (621)
Q Consensus       523 ~~d~~ia~~il~  534 (621)
                      ++...+.++.+.
T Consensus       169 ~e~~~il~~~~~  180 (324)
T 1l8q_A          169 KTRFKIIKEKLK  180 (324)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777766553

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.68  E-value=2.5e-08  Score=101.47  Aligned_cols=128  Identities=25%  Similarity=0.290  Sum_probs=73.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccce-eec---CCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLA---DQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlA---d~gi~~IDEidk~  445 (621)
                      +++|+||||||||+|+++++..++...+.. +..     +     .+...+...-.-+.+ -.+   ..+++++||++.+
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l  144 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----F-----VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV  144 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----H-----HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH-----H-----HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence            599999999999999999999875433221 100     0     000001000000000 011   2368999999764


Q ss_pred             Ch-----------hhhhh---hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213        446 PD-----------ADRTA---IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R  509 (621)
Q Consensus       446 ~~-----------~~~~~---L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R  509 (621)
                      ..           .....   ++..|+.+        .   .+....++|++|...             .|++++++  |
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~ll~~lsgg--------~---~~~~~i~~a~t~~p~-------------~ld~~l~r~~r  200 (278)
T 1iy2_A          145 GRKRGSGVGGGNDEREQTLNQLLVEMDGF--------E---KDTAIVVMAATNRPD-------------ILDPALLRPGR  200 (278)
T ss_dssp             HCC--------CHHHHHHHHHHHHHHTTC--------C---TTCCEEEEEEESCTT-------------SSCHHHHSTTS
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHhCC--------C---CCCCEEEEEecCCch-------------hCCHhHcCCCc
Confidence            21           11222   23333211        0   122357788888763             48899998  9


Q ss_pred             ccEEEEecCCCChHHHHHHHHHHH
Q psy11213        510 FDLLWLIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       510 FDli~~~~d~~d~~~d~~ia~~il  533 (621)
                      ||. .+..+.|+.+...+|.++..
T Consensus       201 f~~-~i~i~~p~~~~r~~il~~~~  223 (278)
T 1iy2_A          201 FDR-QIAIDAPDVKGREQILRIHA  223 (278)
T ss_dssp             SCC-EEECCCCCHHHHHHHHHHHH
T ss_pred             CCe-EEEeCCcCHHHHHHHHHHHH
Confidence            996 56668888888888777543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.67  E-value=7.2e-08  Score=98.17  Aligned_cols=129  Identities=21%  Similarity=0.205  Sum_probs=78.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceee----cCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL----ADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl----Ad~gi~~IDEidk~  445 (621)
                      +++|+||||||||+|+++++..++...+ ..|.....          ...|+....-+.+..    ....++++||++.+
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~----------~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~  115 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN----------MYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL  115 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS----------STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh----------hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhh
Confidence            4999999999999999999998755332 22221110          001110000011110    12468999999986


Q ss_pred             Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213        446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL  512 (621)
Q Consensus       446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl  512 (621)
                      ...           ..+.++..|+.+.           -.....++|++|...             .|++++++  ||| 
T Consensus       116 ~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ia~tn~p~-------------~LD~al~r~gRfd-  170 (274)
T 2x8a_A          116 CPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFIMAATNRPD-------------IIDPAILRPGRLD-  170 (274)
T ss_dssp             CC---------CTTHHHHHHHHHHTCC-----------STTCEEEEEEESCGG-------------GSCHHHHSTTSSC-
T ss_pred             hcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEEEeecCChh-------------hCCHhhcCcccCC-
Confidence            421           1223333333210           112356788888763             48999998  999 


Q ss_pred             EEEecCCCChHHHHHHHHHHHh
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ..+..+.|+.+...+|.+.++.
T Consensus       171 ~~i~~~~P~~~~r~~il~~~~~  192 (274)
T 2x8a_A          171 KTLFVGLPPPADRLAILKTITK  192 (274)
T ss_dssp             EEEECCSCCHHHHHHHHHHHTT
T ss_pred             eEEEeCCcCHHHHHHHHHHHHh
Confidence            5566799999999999987764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.66  E-value=2.3e-09  Score=101.17  Aligned_cols=132  Identities=19%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEee--cCcccceeeeccc----eeecCC-CeeEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMK--DPITNEMVLEGGA----LVLADQ-GICCIDEF  442 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~--~~~~g~~~l~~Ga----lvlAd~-gi~~IDEi  442 (621)
                      +++|+|+||||||++++.+++.+....+... .+.....+......  ....|.+.-.-..    +..+++ .+++|||+
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~  124 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL  124 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETG
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCH
Confidence            8999999999999999999988643111000 00000000000000  0001111000000    111233 48999999


Q ss_pred             CCCCh--------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        443 DKLPD--------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       443 dk~~~--------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      +.+.+        .....|...++.               .++.+|+++|+..        ......+++++++||+  .
T Consensus       125 ~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~--~  179 (195)
T 1jbk_A          125 HTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDE--------YRQYIEKDAALERRFQ--K  179 (195)
T ss_dssp             GGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHH--------HHHHTTTCHHHHTTEE--E
T ss_pred             HHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHH--------HHHHHhcCHHHHHHhc--e
Confidence            99863        335555555543               2467888888652        2233468999999997  3


Q ss_pred             EecCCCChHHHHH
Q psy11213        515 LIQDKPDRDNDLK  527 (621)
Q Consensus       515 ~~~d~~d~~~d~~  527 (621)
                      +....|+.++..+
T Consensus       180 i~~~~p~~~~~~~  192 (195)
T 1jbk_A          180 VFVAEPSVEDTIA  192 (195)
T ss_dssp             EECCCCCHHHHHT
T ss_pred             eecCCCCHHHHHH
Confidence            5567777665443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.66  E-value=4.5e-08  Score=103.33  Aligned_cols=167  Identities=18%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---------c-EEecCCC-CccccceEEEee-----cCcccceeee-ccce--ee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---------S-QYTTGRG-SSGVGLTAAVMK-----DPITNEMVLE-GGAL--VL  431 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---------~-~~~~g~~-~s~~gLta~~~~-----~~~~g~~~l~-~Gal--vl  431 (621)
                      +++|+||||||||++++.+++.+.+         . ++..... .+...+......     .+..|.-.-+ -..+  .+
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l  125 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL  125 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999987632         1 2222111 110000000000     0000000000 0000  01


Q ss_pred             cCCC---eeEecCCCCCChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        432 ADQG---ICCIDEFDKLPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       432 Ad~g---i~~IDEidk~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      ...|   +++|||++.+...  .+..|...++...-        ...+.++.+|+++|...        ..  ..+.+++
T Consensus       126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~--------~~~~~~~~~I~~t~~~~--------~~--~~l~~~l  187 (387)
T 2v1u_A          126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE--------LGDRVWVSLVGITNSLG--------FV--ENLEPRV  187 (387)
T ss_dssp             TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC--------C-----CEEEEECSCST--------TS--SSSCHHH
T ss_pred             hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh--------cCCCceEEEEEEECCCc--------hH--hhhCHHH
Confidence            1223   9999999998776  56666655542100        00045678899998752        11  1478999


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      .+||....+..+.++.++-..+..+.+.....       ...++.+.+.....++.
T Consensus       188 ~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-------~~~~~~~~~~~l~~~~~  236 (387)
T 2v1u_A          188 KSSLGEVELVFPPYTAPQLRDILETRAEEAFN-------PGVLDPDVVPLCAALAA  236 (387)
T ss_dssp             HTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC-------TTTBCSSHHHHHHHHHH
T ss_pred             HhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-------CCCCCHHHHHHHHHHHH
Confidence            99998656777888888888888776642111       12455566666666665

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.62  E-value=7.5e-08  Score=100.87  Aligned_cols=131  Identities=18%  Similarity=0.242  Sum_probs=80.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      |+||+||||||||++++.+++.+....    +.....+...|..  ..++. -+.+. +.+....+...|++|||++.|.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~--~ir~~-i~~~~-~~~~~~~~~~~viiiDe~~~l~  123 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID--VVRNQ-IKDFA-STRQIFSKGFKLIILDEADAMT  123 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHH--HHHTH-HHHHH-HBCCSSSCSCEEEEETTGGGSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHH--HHHHH-HHHHH-hhcccCCCCceEEEEeCCCCCC
Confidence            799999999999999999999853211    1100000000100  00000 00110 1111122346799999999999


Q ss_pred             hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213        447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL  526 (621)
Q Consensus       447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~  526 (621)
                      .+.+++|+..||+.             +..+.++.++|...             .+.+++.||+. . +....++.++..
T Consensus       124 ~~~~~~L~~~le~~-------------~~~~~~il~~n~~~-------------~i~~~i~sR~~-~-~~~~~l~~~~~~  175 (340)
T 1sxj_C          124 NAAQNALRRVIERY-------------TKNTRFCVLANYAH-------------KLTPALLSQCT-R-FRFQPLPQEAIE  175 (340)
T ss_dssp             HHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-E-EECCCCCHHHHH
T ss_pred             HHHHHHHHHHHhcC-------------CCCeEEEEEecCcc-------------ccchhHHhhce-e-EeccCCCHHHHH
Confidence            99999999999863             33456667777652             58899999994 3 444556666666


Q ss_pred             HHHHHHH
Q psy11213        527 KLAQHIT  533 (621)
Q Consensus       527 ~ia~~il  533 (621)
                      ..+.+++
T Consensus       176 ~~l~~~~  182 (340)
T 1sxj_C          176 RRIANVL  182 (340)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666555

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.8e-07  Score=96.91  Aligned_cols=144  Identities=9%  Similarity=0.017  Sum_probs=84.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc-----------cEEecCCCCccc---------cceEEE-eecCccc--ceeeecc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR-----------SQYTTGRGSSGV---------GLTAAV-MKDPITN--EMVLEGG  427 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----------~~~~~g~~~s~~---------gLta~~-~~~~~~g--~~~l~~G  427 (621)
                      +++|+|+||||||.+++++++.+..           .++..+...+..         .|.+.. .......  +..+...
T Consensus        47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~  126 (318)
T 3te6_A           47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV  126 (318)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence            8999999999999999999887632           223333321110         010000 0000000  0000000


Q ss_pred             ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                      .-......|++|||+|.+.  .+..|+..++-..          .-++++.||+.+|...-        .. ..|++++.
T Consensus       127 ~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~--------~~-~~L~~~v~  185 (318)
T 3te6_A          127 PKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVT--------IR-EQINIMPS  185 (318)
T ss_dssp             CGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCC--------CH-HHHHTCHH
T ss_pred             hhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCccc--------ch-hhcchhhh
Confidence            0001123599999999998  5677777664210          12456789999997621        00 12556678


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYV  535 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~  535 (621)
                      |||+...+.....+.++-..|+++-+..
T Consensus       186 SR~~~~~i~F~pYt~~el~~Il~~Rl~~  213 (318)
T 3te6_A          186 LKAHFTEIKLNKVDKNELQQMIITRLKS  213 (318)
T ss_dssp             HHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence            9998777788889999999998887764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.60  E-value=4.3e-07  Score=95.62  Aligned_cols=153  Identities=18%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec----CCCC--------ccccceEEEeecCccc--ce--eee-ccc-eeec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT----GRGS--------SGVGLTAAVMKDPITN--EM--VLE-GGA-LVLA  432 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~----g~~~--------s~~gLta~~~~~~~~g--~~--~l~-~Ga-lvlA  432 (621)
                      .+||+|+||||||++++.+++.+.......    +.-.        ....+.. .......+  ..  .++ ... -..+
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~  118 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARG  118 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE-EETTCSCCSSCHHHHHHHTTSCCSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE-ecccccCCHHHHHHHHHHHhhccccC
Confidence            479999999999999999998754321100    0000        0000110 00000000  00  000 000 0122


Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ...|++|||++.++.+.++.|+..+++             .+..+.+|.++|...             .+.+++.+|+  
T Consensus       119 ~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~-------------~l~~~l~sr~--  170 (373)
T 1jr3_A          119 RFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQ-------------KLPVTILSRC--  170 (373)
T ss_dssp             SSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGG-------------GSCHHHHTTS--
T ss_pred             CeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChH-------------hCcHHHHhhe--
Confidence            356999999999999999999999985             244566777776431             4788999999  


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      ..+....++.++-..+.++.+...         ...++.+.+..+..++
T Consensus       171 ~~i~~~~l~~~~~~~~l~~~~~~~---------~~~~~~~a~~~l~~~~  210 (373)
T 1jr3_A          171 LQFHLKALDVEQIRHQLEHILNEE---------HIAHEPRALQLLARAA  210 (373)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHS
T ss_pred             eEeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHC
Confidence            555667777777666666665422         1134555565555544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.56  E-value=3.4e-07  Score=96.81  Aligned_cols=165  Identities=11%  Similarity=0.081  Sum_probs=91.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCC-CccccceEEEee-----cCccc----ceeeeccceeecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRG-SSGVGLTAAVMK-----DPITN----EMVLEGGALVLADQG  435 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~-~s~~gLta~~~~-----~~~~g----~~~l~~GalvlAd~g  435 (621)
                      +++|+|+||||||++++.+++.+...     ++..... .+...+......     .+..+    +..-.-.....+.++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  125 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL  125 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence            79999999999999999999886432     2222111 110000000000     00000    000000000111233


Q ss_pred             --eeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        436 --ICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       436 --i~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                        +++|||++.++++.+..|..++++..    ..     -+.++.+|+++|...        +..  .+.+++.+||...
T Consensus       126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~-----~~~~~~iI~~~~~~~--------~~~--~l~~~~~~r~~~~  186 (389)
T 1fnn_A          126 YMFLVLDDAFNLAPDILSTFIRLGQEAD----KL-----GAFRIALVIVGHNDA--------VLN--NLDPSTRGIMGKY  186 (389)
T ss_dssp             CEEEEEETGGGSCHHHHHHHHHHTTCHH----HH-----SSCCEEEEEEESSTH--------HHH--TSCHHHHHHHTTC
T ss_pred             eEEEEEECccccchHHHHHHHHHHHhCC----CC-----CcCCEEEEEEECCch--------HHH--HhCHHhhhcCCCc
Confidence              89999999999888899988886521    00     013567888887541        111  3678999999754


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      .+....++.++-..+..+.+.....       ...++.+.+.....++
T Consensus       187 ~i~~~pl~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~l~~~~  227 (389)
T 1fnn_A          187 VIRFSPYTKDQIFDILLDRAKAGLA-------EGSYSEDILQMIADIT  227 (389)
T ss_dssp             EEECCCCBHHHHHHHHHHHHHHHBC-------TTSSCHHHHHHHHHHH
T ss_pred             eEEeCCCCHHHHHHHHHHHHHhhcC-------CCCCCHHHHHHHHHHH
Confidence            5666677777666666665532110       1235555555555554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.56  E-value=1.4e-07  Score=97.05  Aligned_cols=131  Identities=18%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc-----cE-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR-----SQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |+||+||||+|||++++.+++.+..     .+ +..+.  ...+.  ...++. -..+.-....+..+...+++|||++.
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~~--~~i~~~-~~~~~~~~~~~~~~~~~viiiDe~~~  118 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRGI--DVVRNQ-IKHFAQKKLHLPPGKHKIVILDEADS  118 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCSH--HHHHTH-HHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccCh--HHHHHH-HHHHHhccccCCCCCceEEEEECccc
Confidence            7999999999999999999887421     11 11111  10000  000000 00000000011012357999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +..+.++.|+..+++.             +..+.+|.++|...             .+.+++.+|+.  .+....++.++
T Consensus       119 l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sr~~--~i~~~~~~~~~  170 (323)
T 1sxj_B          119 MTAGAQQALRRTMELY-------------SNSTRFAFACNQSN-------------KIIEPLQSQCA--ILRYSKLSDED  170 (323)
T ss_dssp             SCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE--EEECCCCCHHH
T ss_pred             CCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh-------------hchhHHHhhce--EEeecCCCHHH
Confidence            9999999999999862             34566777777642             57899999994  56667777777


Q ss_pred             HHHHHHHHHh
Q psy11213        525 DLKLAQHITY  534 (621)
Q Consensus       525 d~~ia~~il~  534 (621)
                      -..+..+.+.
T Consensus       171 ~~~~l~~~~~  180 (323)
T 1sxj_B          171 VLKRLLQIIK  180 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766553

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.53  E-value=3.1e-07  Score=97.14  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             eeEecCCCCCChhh-hhh-hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        436 ICCIDEFDKLPDAD-RTA-IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       436 i~~IDEidk~~~~~-~~~-L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      +++|||++.+.... +.. +...++..              .++.+|+|+|...-        .  ..+.+++++||+. 
T Consensus       136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~--------~--~~l~~~l~sr~~~-  190 (384)
T 2qby_B          136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINV--------R--DYMEPRVLSSLGP-  190 (384)
T ss_dssp             EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTT--------T--TTSCHHHHHTCCC-
T ss_pred             EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCch--------H--hhhCHHHHhcCCC-
Confidence            99999999986542 444 44444321              46788999986521        0  2478999999976 


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      .+..+.++.++-..+..+.+....       ....++.+.+.....++.
T Consensus       191 ~i~l~~l~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~i~~~~~  232 (384)
T 2qby_B          191 SVIFKPYDAEQLKFILSKYAEYGL-------IKGTYDDEILSYIAAISA  232 (384)
T ss_dssp             EEEECCCCHHHHHHHHHHHHHHTS-------CTTSCCSHHHHHHHHHHH
T ss_pred             eEEECCCCHHHHHHHHHHHHHhhc-------ccCCcCHHHHHHHHHHHH
Confidence            666677788887787777654210       112456666666666665

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.53  E-value=1.7e-07  Score=98.20  Aligned_cols=92  Identities=12%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      +..|++|||++.++...++.|+..|++-             +..+.+|.++|...             .+.+++.|||  
T Consensus       134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-------------~~~~~~Il~t~~~~-------------~l~~~l~sR~--  185 (354)
T 1sxj_E          134 RYKCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC--  185 (354)
T ss_dssp             CCEEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS--
T ss_pred             CCeEEEEeCccccCHHHHHHHHHHHHhh-------------cCCCEEEEEeCCHH-------------HHHHHHHhhc--
Confidence            4559999999999999999999999862             23355666666442             4789999999  


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCC-HHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPID-MSLVRRYIDLC  561 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~-~~~lr~~i~~a  561 (621)
                      ..+-...++.++-..+.+++....         ...++ .+.+...+..+
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~l~~i~~~~  226 (354)
T 1sxj_E          186 LLIRCPAPSDSEISTILSDVVTNE---------RIQLETKDILKRIAQAS  226 (354)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHH---------TCEECCSHHHHHHHHHH
T ss_pred             eEEecCCcCHHHHHHHHHHHHHHc---------CCCCCcHHHHHHHHHHc
Confidence            555667777777777776665421         11244 55565555554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.52  E-value=6.2e-09  Score=97.97  Aligned_cols=116  Identities=21%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCcc-----ccceEEEeecCccccee--ee--ccceeecC-CCeeEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSG-----VGLTAAVMKDPITNEMV--LE--GGALVLAD-QGICCI  439 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~-----~gLta~~~~~~~~g~~~--l~--~GalvlAd-~gi~~I  439 (621)
                      ++||+|+||||||++++.+++.+........ .+...     .++...   ....+.+.  +.  -..+..++ +.+++|
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vl~i  121 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG---AKYRGDFEERLKSILKEVQDAEGQVVMFI  121 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH---CCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC---CCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence            8999999999999999999988643110000 00000     000000   00001100  00  00111122 349999


Q ss_pred             cCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        440 DEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       440 DEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ||++.+.         .+..+.|...++.               .++.+|+++|+..        ......+++++++||
T Consensus       122 De~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~--------~~~~~~~~~~l~~R~  178 (187)
T 2p65_A          122 DEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSE--------YRQFIEKDKALERRF  178 (187)
T ss_dssp             TTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHH--------HHHHTTTCHHHHHHE
T ss_pred             eCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHH--------HHHHHhccHHHHHhc
Confidence            9999986         3334455555543               3467899998752        122235889999999


Q ss_pred             cE
Q psy11213        511 DL  512 (621)
Q Consensus       511 Dl  512 (621)
                      +.
T Consensus       179 ~~  180 (187)
T 2p65_A          179 QQ  180 (187)
T ss_dssp             EE
T ss_pred             Cc
Confidence            74

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.45  E-value=9.1e-07  Score=98.10  Aligned_cols=135  Identities=13%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecC-----cccceeee-ccceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDP-----ITNEMVLE-GGALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~-----~~g~~~l~-~GalvlAd~gi~~IDEid  443 (621)
                      ++||+||||||||++++++++.+...++... .......+........     ..+-+... .+......++|++|||+|
T Consensus        79 ~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid  158 (516)
T 1sxj_A           79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD  158 (516)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence            8999999999999999999998754443211 1100000000000000     00000000 000112345799999999


Q ss_pred             CCChhhh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        444 KLPDADR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       444 k~~~~~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      .+...++   ..|...++..               +..+|.++|....           -.+ +++.+|+  ..+.+..|
T Consensus       159 ~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~-----------~~l-~~l~~r~--~~i~f~~~  209 (516)
T 1sxj_A          159 GMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNL-----------PKM-RPFDRVC--LDIQFRRP  209 (516)
T ss_dssp             GCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTS-----------STT-GGGTTTS--EEEECCCC
T ss_pred             ccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCC-----------ccc-hhhHhce--EEEEeCCC
Confidence            9988766   6677777642               2335555554310           013 4566665  45566777


Q ss_pred             ChHHHHHHHHHHHh
Q psy11213        521 DRDNDLKLAQHITY  534 (621)
Q Consensus       521 d~~~d~~ia~~il~  534 (621)
                      +.+.-.++...+..
T Consensus       210 ~~~~~~~~L~~i~~  223 (516)
T 1sxj_A          210 DANSIKSRLMTIAI  223 (516)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            87776666666543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.43  E-value=8.9e-07  Score=92.55  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=51.8

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL  512 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl  512 (621)
                      ...|++|||+|+|+.+..++|+..||+-             +..+.+|.++|...             .+.+++.||+  
T Consensus       108 ~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~~~-------------~l~~ti~SRc--  159 (334)
T 1a5t_A          108 GAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRC--  159 (334)
T ss_dssp             SCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS--
T ss_pred             CcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH-------------hCcHHHhhcc--
Confidence            4579999999999999999999999862             33455555555331             5899999999  


Q ss_pred             EEEecCCCChHHHHHHHHHH
Q psy11213        513 LWLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       513 i~~~~d~~d~~~d~~ia~~i  532 (621)
                      ..+....++.++-.....+.
T Consensus       160 ~~~~~~~~~~~~~~~~L~~~  179 (334)
T 1a5t_A          160 RLHYLAPPPEQYAVTWLSRE  179 (334)
T ss_dssp             EEEECCCCCHHHHHHHHHHH
T ss_pred             eeeeCCCCCHHHHHHHHHHh
Confidence            34555677776655554443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.23  E-value=2.3e-06  Score=89.96  Aligned_cols=163  Identities=14%  Similarity=0.137  Sum_probs=85.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc------c-EEecCCC-CccccceEEEee-----cCccc----c-eeeeccceeec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR------S-QYTTGRG-SSGVGLTAAVMK-----DPITN----E-MVLEGGALVLA  432 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~-~~~~g~~-~s~~gLta~~~~-----~~~~g----~-~~l~~GalvlA  432 (621)
                      +++|+|+||||||+|++.+++.++.      . ++..+.. .+...+......     .+..|    + +..-...+...
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~  126 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY  126 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence            8999999999999999999987632      1 2222110 000000000000     00000    0 00000000001


Q ss_pred             -CCCeeEecCCCCCC----hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213        433 -DQGICCIDEFDKLP----DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL  507 (621)
Q Consensus       433 -d~gi~~IDEidk~~----~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl  507 (621)
                       ...+++|||++.+.    .+....|+..++..            -+.++.+|+++|...        ..  ..+.+.+.
T Consensus       127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~--------~~--~~~~~~~~  184 (386)
T 2qby_A          127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVK--------FV--DLLDPRVK  184 (386)
T ss_dssp             CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGG--------GG--GGCTTHHH
T ss_pred             CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCC--------hH--hhhCHHHh
Confidence             13589999999875    33444555555432            123467788887542        11  13678899


Q ss_pred             ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      +||....+....++.++-.++..+.+....       ....++.+.++....++.
T Consensus       185 ~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~l~~~~~  232 (386)
T 2qby_A          185 SSLSEEEIIFPPYNAEELEDILTKRAQMAF-------KPGVLPDNVIKLCAALAA  232 (386)
T ss_dssp             HTTTTEEEEECCCCHHHHHHHHHHHHHHHB-------CSSCSCHHHHHHHHHHHH
T ss_pred             ccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-------cCCCCCHHHHHHHHHHHH
Confidence            999755666777888777777776553211       112456666666655554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.21  E-value=1.7e-06  Score=79.64  Aligned_cols=68  Identities=18%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      .++|+|++|+|||+|++.++..++.    .+|..+....              ..      + .+.+..+++|||++.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~--------------~~------~-~~~~~~lLilDE~~~~~   96 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP--------------LT------D-AAFEAEYLAVDQVEKLG   96 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC--------------CC------G-GGGGCSEEEEESTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh--------------HH------H-HHhCCCEEEEeCccccC
Confidence            7899999999999999999988642    1121111100              00      1 12356899999999998


Q ss_pred             hhhhhhhHhhhcc
Q psy11213        447 DADRTAIHEVMEQ  459 (621)
Q Consensus       447 ~~~~~~L~eame~  459 (621)
                      +..+..|.+.++.
T Consensus        97 ~~~~~~l~~li~~  109 (149)
T 2kjq_A           97 NEEQALLFSIFNR  109 (149)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8778888888764

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.20  E-value=1.2e-06  Score=90.41  Aligned_cols=124  Identities=10%  Similarity=0.087  Sum_probs=71.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc-------cccEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA-------RRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDE  441 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~-------pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDE  441 (621)
                      .+.||+||||+|||++++.+++..       |......+.+. ..|.  ..++     +..-.+... ..++..|++|||
T Consensus        19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~~i--d~ir-----~li~~~~~~p~~~~~kvviIde   90 (305)
T 2gno_A           19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NIGI--DDIR-----TIKDFLNYSPELYTRKYVIVHD   90 (305)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CBCH--HHHH-----HHHHHHTSCCSSSSSEEEEETT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CCCH--HHHH-----HHHHHHhhccccCCceEEEecc
Confidence            389999999999999999998742       11111111000 0000  0000     000000000 123457999999


Q ss_pred             CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      ++.|+.+.+++|+..||+-             |..+. |++|.||.              .+.+++.||   ++-+ ..+
T Consensus        91 ad~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~--------------kl~~tI~SR---~~~f-~~l  139 (305)
T 2gno_A           91 CERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH--------------YLLPTIKSR---VFRV-VVN  139 (305)
T ss_dssp             GGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG--------------GSCHHHHTT---SEEE-ECC
T ss_pred             HHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH--------------hChHHHHce---eEeC-CCC
Confidence            9999999999999999963             23334 44444543              589999999   3333 344


Q ss_pred             ChHHHHHHHHHH
Q psy11213        521 DRDNDLKLAQHI  532 (621)
Q Consensus       521 d~~~d~~ia~~i  532 (621)
                      +.++-.....+.
T Consensus       140 ~~~~i~~~L~~~  151 (305)
T 2gno_A          140 VPKEFRDLVKEK  151 (305)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            444444444444

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.97  E-value=6.8e-06  Score=79.31  Aligned_cols=110  Identities=17%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD-  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~-  449 (621)
                      ++|++||||||||+++.++++.+...+.. -.+            . .+. +.+.    .+.+.-+++|||++...-.. 
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~-fan------------s-~s~-f~l~----~l~~~kIiiLDEad~~~~~~~  120 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQGAVIS-FVN------------S-TSH-FWLE----PLTDTKVAMLDDATTTCWTYF  120 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHTCEECC-CCC------------S-SSC-GGGG----GGTTCSSEEEEEECHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeee-EEe------------c-cch-hhhc----ccCCCCEEEEECCCchhHHHH
Confidence            79999999999999999999986322110 000            0 001 1111    23345699999998432111 


Q ss_pred             hhhhHhhhcceEEEEecCCeE-EecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        450 RTAIHEVMEQQTISIAKAGIM-TRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       450 ~~~L~eame~q~isi~k~gi~-~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      ...+..+|+...+++.+.-.. ...+ ...+|-|+|-.-.         +. .--.+|.||.
T Consensus       121 d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~---------~~-~~~~~L~SRi  171 (212)
T 1tue_A          121 DTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPA---------KD-NRWPYLESRI  171 (212)
T ss_dssp             HHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTT---------SS-SSCHHHHTSC
T ss_pred             HHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCcc---------cc-cchhhhhhhE
Confidence            234566677666666322111 1122 2357778885311         11 1237899998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.71  E-value=2.9e-06  Score=80.06  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecC-----cccceeeeccceeecCCCeeEecCCC--
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDP-----ITNEMVLEGGALVLADQGICCIDEFD--  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~-----~~g~~~l~~GalvlAd~gi~~IDEid--  443 (621)
                      +++|+||||+|||+|+++++..+...   .|.....  ++.....+.     ..+.  ...-.-.+.+..+++|||++  
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~llilDE~~~~  112 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGYF--FDTKDLIFRLKHLMDEGK--DTKFLKTVLNSPVLVLDDLGSE  112 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCCE--EEHHHHHHHHHHHHHHTC--CSHHHHHHHTCSEEEEETCSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEEE--EEHHHHHHHHHHHhcCch--HHHHHHHhcCCCEEEEeCCCCC
Confidence            79999999999999999999886310   0100000  000000000     0000  00000012356899999998  


Q ss_pred             CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213        444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA  486 (621)
Q Consensus       444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~  486 (621)
                      .+++..+..+++.++...            .....+|.|+|..
T Consensus       113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~  143 (180)
T 3ec2_A          113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYS  143 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCC
Confidence            566777778888776421            1235677788865

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.67  E-value=0.0002  Score=71.97  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=61.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      +++|+||||||||.+++++++.++..--++.   +             ...+.+.+    +.++-+++.||.... .+..
T Consensus       106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~---~-------------~~~f~l~~----~~~k~i~l~Ee~~~~-~d~~  164 (267)
T 1u0j_A          106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNW---T-------------NENFPFND----CVDKMVIWWEEGKMT-AKVV  164 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEECCT---T-------------CSSCTTGG----GSSCSEEEECSCCEE-TTTH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhhcccceeec---c-------------cccccccc----ccccEEEEeccccch-hHHH
Confidence            7999999999999999999997543111110   0             00111111    123455666666544 4455


Q ss_pred             hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc---cCCCHhHhccc
Q psy11213        451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN---IQLPAALLSRF  510 (621)
Q Consensus       451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~---~~L~~aLlsRF  510 (621)
                      ..+-.+|+-..+.+......-..-.++-+|-|+|-.-..+     ..++   ....++|.||.
T Consensus       165 ~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~-----~~g~~~s~~~~~~L~sR~  222 (267)
T 1u0j_A          165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAV-----IDGNSTTFEHQQPLQDRM  222 (267)
T ss_dssp             HHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCE-----EETTEEECTTHHHHHTTE
T ss_pred             HHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccc-----cccCccchhhhHHHhhhE
Confidence            6777788877777642211111113456777888531110     0111   24557899998

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.47  E-value=0.00011  Score=78.17  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=55.8

Q ss_pred             CeeEecCCCCCCh------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC---Hh
Q psy11213        435 GICCIDEFDKLPD------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP---AA  505 (621)
Q Consensus       435 gi~~IDEidk~~~------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~---~a  505 (621)
                      -+++|||++.+..      +....+...+++..  .  .+    ...++.+|+++|...        +.+  .+.   +.
T Consensus       140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~--~--~~----~~~~v~lI~~~~~~~--------~~~--~l~~~~~~  201 (412)
T 1w5s_A          140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP--S--RD----GVNRIGFLLVASDVR--------ALS--YMREKIPQ  201 (412)
T ss_dssp             EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC--C--TT----SCCBEEEEEEEEETH--------HHH--HHHHHCHH
T ss_pred             EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc--c--CC----CCceEEEEEEecccc--------HHH--HHhhhcch
Confidence            3899999998754      33344445554310  0  00    025677888876431        111  133   56


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK  562 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar  562 (621)
                      +.+||... +.....+.++-.++..+.+.....       ...++.+.+......+.
T Consensus       202 ~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~-------~~~~~~~~~~~i~~~~~  250 (412)
T 1w5s_A          202 VESQIGFK-LHLPAYKSRELYTILEQRAELGLR-------DTVWEPRHLELISDVYG  250 (412)
T ss_dssp             HHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBC-------TTSCCHHHHHHHHHHHC
T ss_pred             hhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCC-------CCCCChHHHHHHHHHHH
Confidence            77888655 666777777666666655432210       12355666666666554

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.37  E-value=0.00052  Score=66.10  Aligned_cols=122  Identities=15%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc--------c-ccEEecCCCCccccceEEEe-e-c--Ccccceeeeccc---e-eecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA--------R-RSQYTTGRGSSGVGLTAAVM-K-D--PITNEMVLEGGA---L-VLAD  433 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~--------p-r~~~~~g~~~s~~gLta~~~-~-~--~~~g~~~l~~Ga---l-vlAd  433 (621)
                      ..|+.|+||+|||+++.......        . |.+|.++...-..+.+.... + .  ..+++- ..+..   + ..+.
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~   85 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQ-LSAHDMYEWIKKPE   85 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSC-EEGGGHHHHTTSGG
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCccc-ccHHHHHHHhhccc
Confidence            56899999999999987753332        2 55554432111111111000 0 0  000100 00000   0 0244


Q ss_pred             --CCeeEecCCCCCChhh-----hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        434 --QGICCIDEFDKLPDAD-----RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       434 --~gi~~IDEidk~~~~~-----~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                        +.|++|||.+.+.+..     ...++..++...            .....||.+++|.             -.|+.++
T Consensus        86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~-------------~~l~~~l  140 (199)
T 2r2a_A           86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGP-------------KLLDQNL  140 (199)
T ss_dssp             GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCG-------------GGBCHHH
T ss_pred             cCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCH-------------HHHhHHH
Confidence              7899999999873211     113444444311            1224555566664             2588899


Q ss_pred             hccccEEEEecC
Q psy11213        507 LSRFDLLWLIQD  518 (621)
Q Consensus       507 lsRFDli~~~~d  518 (621)
                      .+|++..+.+..
T Consensus       141 r~ri~~~~~l~~  152 (199)
T 2r2a_A          141 RTLVRKHYHIAS  152 (199)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HHHhheEEEEcC
Confidence            999988777755

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.25  E-value=2.1e-05  Score=81.15  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+++|+|+||||||.|++++++.+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3999999999999999999998765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.76  E-value=0.0016  Score=61.75  Aligned_cols=26  Identities=12%  Similarity=0.171  Sum_probs=20.0

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQ  459 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~  459 (621)
                      ..+++|||+..++++....|...+++
T Consensus        77 ~dvviIDE~Q~~~~~~~~~l~~l~~~  102 (184)
T 2orw_A           77 TRGVFIDEVQFFNPSLFEVVKDLLDR  102 (184)
T ss_dssp             EEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHC
Confidence            46999999999977766666666654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.64  E-value=0.00079  Score=63.55  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ++.|+|++|+|||+|++.++...+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999998865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.78  E-value=0.0039  Score=59.31  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++|+|+||||||+|++++++.+.
T Consensus        56 ~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           56 GLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.64  E-value=0.013  Score=63.42  Aligned_cols=87  Identities=11%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc-----cEEecCCCCcc------ccceEEEee---------cCcccceeeecccee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR-----SQYTTGRGSSG------VGLTAAVMK---------DPITNEMVLEGGALV  430 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~~~~g~~~s~------~gLta~~~~---------~~~~g~~~l~~Galv  430 (621)
                      ++++.|+||||||+++..++..+..     ...++..+..+      .|..+....         ......+.. ...-.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~-~~~~~  125 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQ-KEVPD  125 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE-CSCCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcc-ccccc
Confidence            8999999999999999998776431     12222211100      011111100         000111111 11112


Q ss_pred             ecCCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213        431 LADQGICCIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       431 lAd~gi~~IDEidk~~~~~~~~L~eame  458 (621)
                      +....+++|||+..++......|...+.
T Consensus       126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~  153 (459)
T 3upu_A          126 LAKCRVLICDEVSMYDRKLFKILLSTIP  153 (459)
T ss_dssp             CSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred             ccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence            2346799999999999888888887775

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.59  E-value=0.015  Score=60.19  Aligned_cols=130  Identities=12%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--cccee--eeccceeecCCCeeEecCCCC-C
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEMV--LEGGALVLADQGICCIDEFDK-L  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~~--l~~GalvlAd~gi~~IDEidk-~  445 (621)
                      ..||+||+|+||++.++.+++.+...    +.  ...   .....+..  -.+..  ....++ .++.-|++|||.+. +
T Consensus        20 ~yl~~G~e~~~~~~~~~~l~~~~~~~----~~--~~~---~~~~~~~~~~~~~l~~~~~~~pl-f~~~kvvii~~~~~kl   89 (343)
T 1jr3_D           20 AYLLLGNDPLLLQESQDAVRQVAAAQ----GF--EEH---HTFSIDPNTDWNAIFSLCQAMSL-FASRQTLLLLLPENGP   89 (343)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHH----TC--CEE---EEEECCTTCCHHHHHHHHHHHHH-CCSCEEEEEECCSSCC
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhC----CC--Cee---EEEEecCCCCHHHHHHHhcCcCC-ccCCeEEEEECCCCCC
Confidence            67889999999999999987754211    00  000   00001100  00000  001111 24567999999999 9


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +.+..++|+..+|+-             |..+ .|++|.++..        ......+.+++.+|.  ..+-...++...
T Consensus        90 ~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~--------~~~~~k~~~~i~sr~--~~~~~~~l~~~~  146 (343)
T 1jr3_D           90 NAAINEQLLTLTGLL-------------HDDLLLIVRGNKLSK--------AQENAAWFTALANRS--VQVTCQTPEQAQ  146 (343)
T ss_dssp             CTTHHHHHHHHHTTC-------------BTTEEEEEEESCCCT--------TTTTSHHHHHHTTTC--EEEEECCCCTTH
T ss_pred             ChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCCh--------hhHhhHHHHHHHhCc--eEEEeeCCCHHH
Confidence            999999999999851             2233 3444443321        111125778999998  333444455444


Q ss_pred             HHHHHHHHH
Q psy11213        525 DLKLAQHIT  533 (621)
Q Consensus       525 d~~ia~~il  533 (621)
                      -....+.++
T Consensus       147 l~~~l~~~~  155 (343)
T 1jr3_D          147 LPRWVAARA  155 (343)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.36  E-value=0.0086  Score=55.18  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|.|+|+||+|||++++.++..++.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.36  E-value=0.01  Score=55.02  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|+|+|+||+|||++++.+++.++...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l~~~~   31 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVLPEPW   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            689999999999999999999876543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.22  E-value=0.009  Score=55.77  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=24.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+++.+....+
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~l~~~~i   34 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKLTKRILY   34 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            7999999999999999999988654443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.21  E-value=0.0094  Score=55.28  Aligned_cols=28  Identities=25%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+++.+....+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~   33 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFL   33 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence            6899999999999999999988654433

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.11  E-value=0.01  Score=54.54  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ||+|.|.||+|||++++.+++.+...++.
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg~~~id   37 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALKLEVLD   37 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            89999999999999999999976555544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.11  E-value=0.013  Score=53.58  Aligned_cols=26  Identities=19%  Similarity=0.141  Sum_probs=22.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      .|+|.|+||+|||++++.+++.++..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~   28 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYP   28 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            58899999999999999999886533

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.97  E-value=0.012  Score=55.98  Aligned_cols=27  Identities=26%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|+|+|+||+|||++++.+++.+....
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~~l~~~~   53 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFARKLNVPF   53 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            799999999999999999998864433

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.96  E-value=0.014  Score=65.13  Aligned_cols=86  Identities=21%  Similarity=0.243  Sum_probs=46.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccc------cceEEEeecCc--c-cceeeeccceeecCCCee
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGV------GLTAAVMKDPI--T-NEMVLEGGALVLADQGIC  437 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~------gLta~~~~~~~--~-g~~~l~~GalvlAd~gi~  437 (621)
                      .+++.|+||||||+++..+...+..    ..+.+..+..+.      |..+..+..-.  . ..+.  ...--..+..++
T Consensus       206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~--~~~~~~~~~dvl  283 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFR--HNHLEPAPYDLL  283 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEES--CSSSSCCSCSEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhh--hhhcccccCCEE
Confidence            8999999999999999998776421    122211111000      11111110000  0 0011  000011135799


Q ss_pred             EecCCCCCChhhhhhhHhhhc
Q psy11213        438 CIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       438 ~IDEidk~~~~~~~~L~eame  458 (621)
                      +|||+..++......|++++.
T Consensus       284 IIDEasml~~~~~~~Ll~~~~  304 (574)
T 3e1s_A          284 IVDEVSMMGDALMLSLLAAVP  304 (574)
T ss_dssp             EECCGGGCCHHHHHHHHTTSC
T ss_pred             EEcCccCCCHHHHHHHHHhCc
Confidence            999999999887777777764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.86  E-value=0.014  Score=55.97  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|.|+||+|||++++.+++.++...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   30 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS   30 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            68999999999999999998876554443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.85  E-value=0.013  Score=54.44  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=24.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+++.+....+.
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~   41 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELASKSGLKYIN   41 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence            79999999999999999999886544443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.64  E-value=0.016  Score=53.40  Aligned_cols=21  Identities=29%  Similarity=0.260  Sum_probs=19.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+|+|+||+|||++++.+++
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            589999999999999999998

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.61  E-value=0.016  Score=53.96  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|+|+|+||+|||++++.+++.+...++.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id   32 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD   32 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence            58999999999999999999976544443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.59  E-value=0.015  Score=54.16  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      ..|+|+|+||+|||++++.+++.+....
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~~   32 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFKK   32 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            3689999999999999999998654333

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.59  E-value=0.018  Score=52.54  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|+|+||+|||++++.+ +......+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i   29 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVI   29 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence            5889999999999999999 65444333

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.55  E-value=0.017  Score=55.32  Aligned_cols=29  Identities=31%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|.|+||+|||++++.+++.++...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   30 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS   30 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence            68999999999999999998876544443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.47  E-value=0.019  Score=53.79  Aligned_cols=29  Identities=28%  Similarity=0.435  Sum_probs=23.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh-ccccEE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL-ARRSQY  398 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~-~pr~~~  398 (621)
                      .+|+|+|+||+|||++++.+++. ....++
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i   40 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDGFQHL   40 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence            37999999999999999999998 443333

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.023  Score=53.97  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|+|+|+||+|||++++.+++.++.
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~lg~   44 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEACGY   44 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999988643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.44  E-value=0.02  Score=55.12  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=24.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      ..|+|+|+||+|||++++.+++.+....+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i   33 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAAHL   33 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence            47999999999999999999987654433

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.43  E-value=0.034  Score=62.54  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+++.|+||||||+++.++...+
T Consensus       166 ~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          166 ISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999888776543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.35  E-value=0.021  Score=52.49  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|.|+||+|||++++.+++.+...++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i   31 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYEFV   31 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            6899999999999999999997654443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.35  E-value=0.027  Score=55.94  Aligned_cols=29  Identities=10%  Similarity=0.028  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .++|+|+||+|||+|++.+++.++..++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~   31 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVA   31 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence            47899999999999999999886654443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.33  E-value=0.024  Score=53.14  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||++++.++....
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~   27 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLD   27 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            478999999999999999987543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.27  E-value=0.021  Score=54.98  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .|+|.||||+||++.++.+++.+.-....+|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG   32 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG   32 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence            5889999999999999999998654444433

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.27  E-value=0.027  Score=51.95  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+||+|||++++.++..+.
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhhC
Confidence            689999999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.27  E-value=0.022  Score=53.17  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|+|+|+||+|||++++.+++.+....
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~   31 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEKYGYTH   31 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            689999999999999999998754433

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.25  E-value=0.022  Score=53.99  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=24.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ..|+|+|+||+|||++++.+++.+...++.
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~   50 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS   50 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            479999999999999999999876544433

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.23  E-value=0.033  Score=52.67  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++...|
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC
Confidence            477899999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.20  E-value=0.022  Score=53.07  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..|+|.|+||+|||++++.+++.++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.16  E-value=0.029  Score=53.24  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||++++.++..+.
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            688999999999999999998863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.15  E-value=0.045  Score=57.29  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++||+|+|||++++.++...+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhccc
Confidence            899999999999999999988764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.13  E-value=0.019  Score=53.67  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|+||+|||++++.++...
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68899999999999999999873

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.09  E-value=0.026  Score=51.65  Aligned_cols=28  Identities=29%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|.|.||+|||++++.+++.+...++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i   29 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY   29 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5899999999999999999997654443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.02  E-value=0.027  Score=52.18  Aligned_cols=28  Identities=21%  Similarity=0.139  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|.|.||+|||++++.+++.+...++
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            6899999999999999999988665443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.02  E-value=0.022  Score=53.35  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|.|+|+||+|||++++.+++.++...+
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i   38 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL   38 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            7899999999999999999987654443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.98  E-value=0.028  Score=52.54  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|+|+|+||+|||++++.+++.+.
T Consensus         7 ~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.96  E-value=0.028  Score=54.12  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|.|+|++|+|||++++.+++.++-....
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d   35 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEALQWHLLD   35 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            68999999999999999999876543333

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.88  E-value=0.022  Score=53.12  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|+|+|+||+|||++++.+++.++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.88  E-value=0.028  Score=54.78  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+|+|+|+||+|||++++.+++.+....+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~   46 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA   46 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            389999999999999999999886544443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.82  E-value=0.025  Score=53.10  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|.|+|+||+|||++++.+++.+....+
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i   41 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL   41 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            6899999999999999999998654333

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.76  E-value=0.034  Score=51.92  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||+|+|||+|++.++...+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            578999999999999999998865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.76  E-value=0.029  Score=54.41  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|+|+||+|||++++.+++.+....+
T Consensus         9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i   36 (227)
T 1zd8_A            9 RAVIMGAPGSGKGTVSSRITTHFELKHL   36 (227)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            7899999999999999999987654443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.75  E-value=0.026  Score=54.16  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|.|+||+|||++++.+++.+...++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~   30 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            68999999999999999999876544443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.71  E-value=0.034  Score=52.92  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..++|+|+||+|||++++.+++.++
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3689999999999999999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.70  E-value=0.028  Score=55.20  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|+||+|||++++.+++.+
T Consensus        29 ~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999999654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.67  E-value=0.028  Score=52.37  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=23.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .|+|+|+||+|||++++.+++.++...+
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i   35 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDFGWVHL   35 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            6899999999999999999987654433

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.67  E-value=0.031  Score=54.33  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|+|+||||+||++.++.+++.+.-....
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~~g~~hIs   59 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLS   59 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            47889999999999999999986544333

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.64  E-value=0.036  Score=52.43  Aligned_cols=29  Identities=17%  Similarity=0.248  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|+|+|+||+|||++++.+++.++...+.
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~   45 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS   45 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence            68999999999999999999876544433

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.62  E-value=0.033  Score=54.83  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      ..|+|.|+||+|||++++.+++.++...+.+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            4799999999999999999998765544443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.61  E-value=0.034  Score=53.85  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|+|.|+||+|||++++.+++.+....+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~   30 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE   30 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            58999999999999999999876544433

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.58  E-value=0.031  Score=53.87  Aligned_cols=30  Identities=23%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ..|+|+|+||+|||++++.+++.+....+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~   35 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS   35 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence            479999999999999999999986544443

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.53  E-value=0.042  Score=51.68  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|.|+|+||+|||++++.+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            5889999999999999999997653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.51  E-value=0.047  Score=55.28  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++|+|+||+|||++++.+++.++
T Consensus        35 livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           35 AFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999998765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.40  E-value=0.038  Score=52.34  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|+|.|+||+|||++++.+++.++
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.36  E-value=0.069  Score=53.86  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+.|+|+.|+|||+|++.++.+.+
T Consensus        32 ~~~~vL~~isl~i~~Ge---------~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           32 QGKTILKKISWQIAKGD---------KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTEEEEEEEEEEEETTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEeeeEEEcCCC---------EEEEECCCCCcHHHHHHHHhCCCC
Confidence            33444555544333344         678999999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.35  E-value=0.035  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||++++.++..++
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.33  E-value=0.028  Score=54.19  Aligned_cols=26  Identities=15%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ..|+|+|+||+|||++++.+++.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            37999999999999999999988654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.28  E-value=0.043  Score=51.84  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|++|+|||++++.++...
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68899999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.09  E-value=0.049  Score=52.16  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+||+|+|||++++.++...+.
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCC
Confidence            5789999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.06  E-value=0.047  Score=49.40  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|+||+|||+|++.+...
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999999999999988643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=92.89  E-value=0.041  Score=54.45  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++|+|+||+|||++++.+++.++
T Consensus        34 ~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           34 AILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            789999999999999999999865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.70  E-value=0.21  Score=48.56  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+|+|++|+|||+|+..+...
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999998765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.64  E-value=0.054  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|.|+|++|+|||++++.+++ +.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g   25 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG   25 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC
Confidence            588999999999999999998 54

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.64  E-value=0.055  Score=50.51  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..+.|+|.||+|||++++.++..+.
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.62  E-value=0.061  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.57  E-value=0.11  Score=52.02  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhh
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |++..+.+|-..+..+.         -+.|+|+.|+|||+|++.++.+
T Consensus        31 ~~~~vl~~vsl~i~~Ge---------~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           31 EDKAILRGLSLDVHPGE---------VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEEeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhCC
Confidence            44445555544444444         6889999999999999999987

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.56  E-value=0.065  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|+..+..-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999888754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.55  E-value=0.052  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++..++
T Consensus        24 ~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           24 LVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            678999999999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.55  E-value=0.092  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999987753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.54  E-value=0.11  Score=51.80  Aligned_cols=41  Identities=29%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+.|+|+.|+|||+|++.++.+.+
T Consensus        17 ~~~~vl~~vsl~i~~Ge---------~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           17 GGHEVLKGVSLQARAGD---------VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhcCCC
Confidence            44445555544444444         678999999999999999998864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.50  E-value=0.064  Score=50.88  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .+.|+|++|+|||++++.+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999988

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.45  E-value=0.069  Score=49.46  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=21.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ++|+++|+||+|||+|++++....+
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5899999999999999998877643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.45  E-value=0.071  Score=52.72  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      .|.|+|++|+|||++++.+++.+.-..+.+|
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g   59 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESLNWRLLDSG   59 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence            7889999999999999999977654444443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.39  E-value=0.069  Score=48.11  Aligned_cols=23  Identities=35%  Similarity=0.703  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.39  E-value=0.082  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+.|+|++|+|||+|++.++..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.39  E-value=0.066  Score=52.55  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      ..+.|.|+||+|||++++.+++.+.-..+..|
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g   41 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence            47999999999999999999987654444433

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.37  E-value=0.073  Score=50.13  Aligned_cols=24  Identities=17%  Similarity=-0.014  Sum_probs=22.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..|.|+|+||+|||++++.+++.+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=92.37  E-value=0.065  Score=53.27  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+|+|.||+|||++++.+++.
T Consensus         6 lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999986

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.36  E-value=0.069  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.35  E-value=0.067  Score=48.25  Aligned_cols=24  Identities=25%  Similarity=0.402  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            368999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.34  E-value=0.071  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.32  E-value=0.068  Score=49.75  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=21.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .|.|.|.||+|||++++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.28  E-value=0.07  Score=48.44  Aligned_cols=23  Identities=39%  Similarity=0.677  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|++.+...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            58999999999999999988654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.27  E-value=0.073  Score=52.81  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=24.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|.|+|++|+|||++++.+++.+....+.
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d   78 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD   78 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence            89999999999999999999976554443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=92.26  E-value=0.069  Score=50.73  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+||+|+|||+|++.+....+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            688999999999999999998865

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.25  E-value=0.073  Score=47.69  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.21  E-value=0.11  Score=51.57  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.20  E-value=0.075  Score=47.72  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.16  E-value=0.076  Score=47.69  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.15  E-value=0.054  Score=51.43  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|.|.|.||+|||++++.+++.++
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998753

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=92.14  E-value=0.16  Score=49.37  Aligned_cols=22  Identities=14%  Similarity=-0.147  Sum_probs=17.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      =+++.|+||+|||+++..++..
T Consensus        14 i~litG~mGsGKTT~ll~~~~r   35 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHR   35 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4678999999999977766554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.13  E-value=0.077  Score=48.31  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=92.07  E-value=0.13  Score=50.62  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+|+|+||+|||+|+..+...
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.05  E-value=0.12  Score=51.57  Aligned_cols=41  Identities=17%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+.|+|+.|+|||+|++.++.+.+
T Consensus        22 ~~~~vL~~vsl~i~~Ge---------~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           22 QQQALINDVSLHIASGE---------MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTEEEEEEEEEEEETTC---------EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCeeEEEeeEEEEcCCC---------EEEEECCCCCcHHHHHHHHhcCCC
Confidence            44445566644444444         678999999999999999998854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.05  E-value=0.079  Score=47.63  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++..-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.05  E-value=0.075  Score=49.96  Aligned_cols=24  Identities=46%  Similarity=0.704  Sum_probs=21.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.+.|+|++|+|||+|++.++...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            479999999999999999998763

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=92.03  E-value=0.081  Score=50.44  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||+|+|||+|++.++.+.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            467889999999999999999986

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=92.02  E-value=0.029  Score=60.23  Aligned_cols=90  Identities=12%  Similarity=-0.022  Sum_probs=46.2

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEee----cCcc-ccee-----eeccceeecCCCeeEecC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMK----DPIT-NEMV-----LEGGALVLADQGICCIDE  441 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~----~~~~-g~~~-----l~~GalvlAd~gi~~IDE  441 (621)
                      .++.|+||+|||+++..++..-+..+.+ ........+-.....    .... .-.+     +.++.....+..+++|||
T Consensus       164 ~~I~G~aGsGKTt~I~~~~~~~~~lVlT-pT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE  242 (446)
T 3vkw_A          164 VLVDGVPGCGKTKEILSRVNFEEDLILV-PGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDE  242 (446)
T ss_dssp             EEEEECTTSCHHHHHHHHCCTTTCEEEE-SCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEET
T ss_pred             EEEEcCCCCCHHHHHHHHhccCCeEEEe-CCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeC
Confidence            4678999999999998877542222222 221111111100000    0000 0011     111111111257999999


Q ss_pred             CCCCChhhhhhhHhhhcceEE
Q psy11213        442 FDKLPDADRTAIHEVMEQQTI  462 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~i  462 (621)
                      +.+++......++.+.....+
T Consensus       243 ~sm~~~~~l~~l~~~~~~~~v  263 (446)
T 3vkw_A          243 GLMLHTGCVNFLVEMSLCDIA  263 (446)
T ss_dssp             GGGSCHHHHHHHHHHTTCSEE
T ss_pred             cccCCHHHHHHHHHhCCCCEE
Confidence            999998877777766654443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.01  E-value=0.077  Score=50.07  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=24.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      .|.|.|++|+|||++++.+++.++..++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~   33 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSS   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence            578999999999999999999766555443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.98  E-value=0.082  Score=48.19  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|++.+...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.97  E-value=0.084  Score=50.15  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+||+|||++++.+++.++
T Consensus        23 ~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           23 IIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTST
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            688999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.96  E-value=0.11  Score=49.10  Aligned_cols=26  Identities=31%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      .|.|+||+|+|||+|++.+.+..|..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~   28 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDS   28 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence            58999999999999999998877653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.94  E-value=0.088  Score=48.33  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++...|
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            578999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=91.93  E-value=0.068  Score=49.45  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=17.0

Q ss_pred             cEEEeCCCCcchhHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYI  389 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~i  389 (621)
                      -+.|+|++|+|||+|++.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5788999999999999974

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.92  E-value=0.082  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=91.92  E-value=0.067  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|++.++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.90  E-value=0.13  Score=53.01  Aligned_cols=30  Identities=20%  Similarity=0.219  Sum_probs=25.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      .|+|+|++|+|||+|++.+++.++..++..
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l~~~iis~   36 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADALPCELISV   36 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence            689999999999999999999987555443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.89  E-value=0.15  Score=50.95  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            678999999999999999998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.88  E-value=0.15  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=91.87  E-value=0.16  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|.|+|+||+|||+|++++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.86  E-value=0.14  Score=50.25  Aligned_cols=24  Identities=38%  Similarity=0.530  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999988754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.86  E-value=0.072  Score=47.99  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.81  E-value=0.089  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+++|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999998765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.79  E-value=0.089  Score=47.98  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.75  E-value=0.089  Score=47.83  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=91.74  E-value=0.064  Score=50.96  Aligned_cols=25  Identities=20%  Similarity=0.015  Sum_probs=22.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..|.|+|+||+|||++++.+++.++
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999998753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.74  E-value=0.076  Score=47.36  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.73  E-value=0.07  Score=48.03  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|+||+|||+|++.+..
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            5899999999999999998753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=91.63  E-value=0.12  Score=49.33  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+||+|+|||+|++.+++..|.
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~~   45 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNPE   45 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCc
Confidence            6789999999999999999988763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=91.63  E-value=0.15  Score=50.45  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999999998854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=91.61  E-value=0.095  Score=50.57  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||+|+|||+|++.++...|
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            578999999999999999999876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.59  E-value=0.12  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .|+|+|+||+|||++++.+++..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999999853

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.52  E-value=0.088  Score=47.86  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+.|+|+||+|||+|++.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.50  E-value=0.095  Score=48.73  Aligned_cols=23  Identities=39%  Similarity=0.696  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999988764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=91.46  E-value=0.17  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678899999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.45  E-value=0.097  Score=49.76  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=22.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..+|+++|++|+|||+|+.++....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4599999999999999999988753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.40  E-value=0.1  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+..+..-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999998653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.39  E-value=0.1  Score=47.60  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.37  E-value=0.1  Score=47.59  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.35  E-value=0.11  Score=50.43  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++...|
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            577899999999999999999876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=91.34  E-value=0.096  Score=53.87  Aligned_cols=22  Identities=14%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|.|+||+|||+|+..++..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5689999999999999999875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.33  E-value=0.084  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999988764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=91.33  E-value=0.088  Score=50.29  Aligned_cols=24  Identities=29%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .|+|+|+||+|||++++.+++.++
T Consensus        27 ~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           27 TIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999998865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.32  E-value=0.1  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.31  E-value=0.098  Score=47.64  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|++|+|||+|++.+..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=91.29  E-value=0.083  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++..++
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=91.29  E-value=0.16  Score=52.57  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      .|+|+||+|+|||+|+..+|+.++..+...+.
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds   73 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence            68899999999999999999998765554433

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.27  E-value=0.11  Score=47.80  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=91.26  E-value=0.1  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+|+||+|||+|++.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5788999999999999999855

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.23  E-value=0.12  Score=47.94  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|+.++...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=91.21  E-value=0.17  Score=49.62  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            688999999999999999987753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.21  E-value=0.083  Score=52.98  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++.|+|++|+|||+|++.++...+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=91.15  E-value=0.17  Score=50.79  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+||.|+|||+|++.++.+.+.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            6789999999999999999988653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.14  E-value=0.12  Score=47.87  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|++|+|||++++.++..+
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.14  E-value=0.11  Score=47.56  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+..-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.13  E-value=0.11  Score=48.21  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=20.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.|+++|++|+|||+|++.+..-
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999776543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.11  E-value=0.11  Score=48.22  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|++.+...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            58999999999999999887654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.09  E-value=0.098  Score=47.64  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.07  E-value=0.097  Score=49.00  Aligned_cols=24  Identities=46%  Similarity=0.704  Sum_probs=21.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.+.|+|++|+|||+|++.++...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=91.06  E-value=0.11  Score=49.23  Aligned_cols=29  Identities=17%  Similarity=0.162  Sum_probs=23.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .|.|.|.+|+|||++++.+++.+...++.
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~vid   42 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN   42 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence            58899999999999999999875444433

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=91.05  E-value=0.13  Score=47.80  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ...|+++|++|+|||+|+..+...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999998765

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=91.02  E-value=0.21  Score=48.86  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +++++|++|+|||.++..++...
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            69999999999999988776654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.02  E-value=0.17  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999998865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.01  E-value=0.097  Score=48.10  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|.|+|+||+|||+|++.+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999865

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.01  E-value=0.12  Score=48.24  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            359999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.00  E-value=0.099  Score=47.50  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999988753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.96  E-value=0.11  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+|+++|++|+|||+|++.+...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.96  E-value=0.12  Score=47.22  Aligned_cols=24  Identities=29%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+..-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.94  E-value=0.12  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=90.94  E-value=0.12  Score=54.39  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .++|+|+||+|||+|++.++...
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            78999999999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=90.93  E-value=0.22  Score=52.44  Aligned_cols=41  Identities=29%  Similarity=0.402  Sum_probs=29.6

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+.|+||.|+|||+|+|.++.+.+
T Consensus        14 g~~~~L~~vsl~i~~Ge---------~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEGE---------FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEeeeEEEECCCC---------EEEEEcCCCchHHHHHHHHHcCCC
Confidence            44445555544443344         577899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.93  E-value=0.12  Score=47.31  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            58999999999999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.92  E-value=0.12  Score=47.91  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            48999999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.91  E-value=0.12  Score=49.22  Aligned_cols=21  Identities=14%  Similarity=-0.021  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -++|+|+||+|||+|++.++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=90.91  E-value=0.11  Score=47.80  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|.|+|++|+|||+|++.+...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=90.90  E-value=0.11  Score=50.17  Aligned_cols=21  Identities=14%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -++|+|+||+|||+|++.++.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            678999999999999999987

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.90  E-value=0.11  Score=48.32  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++++...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            469999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.87  E-value=0.12  Score=48.09  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.86  E-value=0.1  Score=48.19  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|++.+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=90.83  E-value=0.21  Score=49.34  Aligned_cols=22  Identities=32%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+.|+|+.|+|||+|++.++.+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999986

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.82  E-value=0.12  Score=47.89  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            358999999999999999998754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.82  E-value=0.089  Score=48.50  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            47999999999999999988754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=90.80  E-value=0.14  Score=50.00  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            678999999999999999998865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.79  E-value=0.13  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+..-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999988653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=90.78  E-value=0.11  Score=48.66  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|.|++|+|||++++.+++.
T Consensus        10 ~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999987

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.73  E-value=0.2  Score=52.33  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |+...+.+|=..+..+.         -+.|+||.|+|||+|+|.++.+.+.
T Consensus        15 ~~~~~L~~vsl~i~~Ge---------~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           15 QNTPVLNDISLSLDPGE---------ILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEEeeEEEEcCCC---------EEEEECCCCchHHHHHHHHhcCCCC
Confidence            44445556544443344         5788999999999999999998643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=90.71  E-value=0.14  Score=50.46  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=90.70  E-value=0.11  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999988754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=90.68  E-value=0.11  Score=54.22  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +++|+|+||+|||++++.+++.+..
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            7999999999999999999987654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.66  E-value=0.23  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            577899999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.66  E-value=0.13  Score=48.14  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+..+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.66  E-value=0.12  Score=48.38  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=90.66  E-value=0.13  Score=47.68  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=90.65  E-value=0.11  Score=49.06  Aligned_cols=24  Identities=29%  Similarity=0.600  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            578999999999999999998763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=90.63  E-value=0.14  Score=50.28  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999999999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.62  E-value=0.13  Score=48.16  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.61  E-value=0.13  Score=50.00  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      ..|.|+|++|+|||++++.+++.+....+..|
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d   48 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG   48 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence            36899999999999999999987654444433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.59  E-value=0.13  Score=47.50  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++++...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=90.52  E-value=0.18  Score=49.64  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ..|.|.|+||+|||++++.+++.+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            36889999999999999999997543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.50  E-value=0.13  Score=47.70  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=90.49  E-value=0.15  Score=48.84  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..|.|.|++|+|||++++.+++
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999998

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.47  E-value=0.11  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+|+++|++|+|||+|+..+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.46  E-value=0.12  Score=48.18  Aligned_cols=23  Identities=35%  Similarity=0.754  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=90.44  E-value=0.25  Score=49.34  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+|+.|+|||+|++.++.+.+.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~p   59 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIEP   59 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            6789999999999999999988653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.43  E-value=0.16  Score=48.50  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++|+|++|+|||+|+..+++...
T Consensus        36 ~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           36 GVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            699999999999999999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.43  E-value=0.25  Score=51.84  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+||.|+|||+|++.++.+.+.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            6778999999999999999998653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.42  E-value=0.16  Score=48.51  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG  401 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g  401 (621)
                      ..|.|.|+||+|||++++.+++.+.-..+..+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d   35 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG   35 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence            36899999999999999999997665555443

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=90.38  E-value=0.24  Score=51.84  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            577899999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.36  E-value=0.12  Score=47.55  Aligned_cols=24  Identities=13%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            469999999999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.36  E-value=0.14  Score=47.99  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++++...
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            469999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.35  E-value=0.12  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+..-
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999988743

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=90.34  E-value=0.14  Score=47.89  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|+||+|||+|+..+..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=90.31  E-value=0.096  Score=50.76  Aligned_cols=25  Identities=12%  Similarity=0.205  Sum_probs=15.1

Q ss_pred             cEEEeCCCCcchhHHHHHHH-hhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIE-RLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia-~~~pr  395 (621)
                      -+.|+||+|+|||++++.++ ...|.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC----C
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            47789999999999999999 88654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.28  E-value=0.12  Score=47.95  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            58999999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.24  E-value=0.17  Score=53.48  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            688999999999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.21  E-value=0.25  Score=51.87  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            578899999999999999999865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.16  E-value=0.095  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=10.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|++|+|||+|++.+..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999988764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.16  E-value=0.15  Score=50.13  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999998864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.12  E-value=0.13  Score=48.32  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            358999999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.06  E-value=0.13  Score=48.35  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+.++...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=89.91  E-value=0.15  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+||+|+|||+|++.++.+.
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            67889999999999999999986

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.88  E-value=0.16  Score=47.76  Aligned_cols=24  Identities=42%  Similarity=0.492  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|+||+|||+|+.++...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999988753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=89.84  E-value=0.14  Score=51.04  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++||+|+|||++++.++...+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhCC
Confidence            689999999999999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=89.83  E-value=0.15  Score=47.68  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            459999999999999999988643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=89.83  E-value=0.14  Score=47.71  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|+||+|||+|++.+..-
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=89.82  E-value=0.24  Score=51.49  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            678899999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=89.81  E-value=0.19  Score=52.22  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+.|+|+||+|||+|++.++...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.73  E-value=0.16  Score=47.38  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999988643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.69  E-value=0.14  Score=47.32  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+..-
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            469999999999999999998743

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=89.68  E-value=0.18  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|.|+.|+|||+|++.++..++
T Consensus        27 iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            578899999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=89.63  E-value=0.12  Score=47.51  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=89.63  E-value=0.17  Score=48.04  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999988753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=89.63  E-value=0.075  Score=50.46  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|.++|++|+|||++++.+++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=89.58  E-value=0.15  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|++.+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.56  E-value=0.14  Score=48.12  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .+.|+++|+||+|||+|++.+..
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.56  E-value=0.15  Score=47.12  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+|+++|++|+|||+|+..+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            458999999999999999988655

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.55  E-value=0.15  Score=48.24  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            48999999999999999988754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=89.53  E-value=0.25  Score=50.43  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .+|....+.+|-..+..+.         -+.|+|+.|+|||+|++.++.+.+.
T Consensus        63 y~~~~~vL~~isl~i~~Ge---------~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           63 YADGRETLQDVSFTVMPGQ---------TLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             SSTTCEEEEEEEEEECTTC---------EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             cCCCCceeeeeeEEEcCCC---------EEEEECCCCchHHHHHHHHHcCCCC
Confidence            3343444555544333344         7899999999999999999998653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=89.52  E-value=0.21  Score=49.96  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+|+.|+|||+|++.++.+.+.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            6789999999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.50  E-value=0.24  Score=51.33  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=24.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      -|.++|++|+|||+|++.+++.++..+.
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~~~ii   36 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFNGEII   36 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence            5789999999999999999998874433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=89.47  E-value=0.18  Score=49.14  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=22.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .-|.|.|+||+|||++++.+++.++
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3688999999999999999999865

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=89.43  E-value=0.14  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999988643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=89.43  E-value=0.17  Score=48.55  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+.|+|+.|+|||+|++.++.+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4678999999999999999988

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.42  E-value=0.19  Score=47.58  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=20.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|+..+...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=89.35  E-value=0.16  Score=46.87  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.|+++|++|+|||+|++.+...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.34  E-value=0.15  Score=47.75  Aligned_cols=24  Identities=25%  Similarity=0.182  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++++...
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            469999999999999999977654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=89.25  E-value=0.26  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            678999999999999999998864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=89.25  E-value=0.32  Score=49.68  Aligned_cols=28  Identities=21%  Similarity=0.270  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      -++++||+|+|||+|+..+++.++..+.
T Consensus        12 ~i~i~GptgsGKt~la~~La~~~~~~ii   39 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRKILPVELI   39 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence            4788999999999999999999775443

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.24  E-value=0.12  Score=47.47  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHH
Q psy11213        369 NINICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      .++|+++|++|+|||+|+..+.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4599999999999999998775

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=89.18  E-value=0.21  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.572  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            577899999999999999999865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.10  E-value=0.18  Score=46.88  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.09  E-value=0.21  Score=47.64  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+..-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            469999999999999999988764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.08  E-value=0.27  Score=50.37  Aligned_cols=27  Identities=11%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      -|+++||+|+|||+|+..+++.++..+
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~~i   31 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNGEV   31 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCccce
Confidence            478899999999999999999877543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.07  E-value=0.18  Score=47.54  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            58999999999999999998654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=89.06  E-value=0.19  Score=53.56  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -|+|+|+||+|||++++.+++.+
T Consensus       260 lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          260 VVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             EEEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=89.05  E-value=0.15  Score=48.24  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||++++.++..++
T Consensus        24 ~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           24 VLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=89.03  E-value=0.18  Score=51.68  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .-+.|+|++|+|||+|++.++.+++.
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCchHHHHHHHHHhhccc
Confidence            36788999999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.00  E-value=0.18  Score=47.41  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999988764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=88.98  E-value=0.18  Score=48.84  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -+++.|+||+|||+|+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999776644

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=88.96  E-value=0.18  Score=47.53  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+..-
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            469999999999999999888754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=88.92  E-value=0.18  Score=47.63  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+..-
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=88.92  E-value=0.17  Score=47.25  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .++|+++|++|+|||+|++.+..
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            46999999999999999998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=88.82  E-value=0.18  Score=48.00  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++|+++|++|+|||+|++.+..
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            5899999999999999998864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=88.76  E-value=0.22  Score=48.50  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |.++|++.|+||+|||+++-.++..
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~   29 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHA   29 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHH
Confidence            5679999999999999997776655

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.75  E-value=0.19  Score=47.43  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+..+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            48999999999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.74  E-value=0.22  Score=47.65  Aligned_cols=23  Identities=48%  Similarity=0.719  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            48999999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=88.64  E-value=0.15  Score=47.20  Aligned_cols=24  Identities=8%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|++.+...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999887654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=88.59  E-value=0.19  Score=50.64  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -++|+|+||+|||+|++.++...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999988774

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=88.56  E-value=0.37  Score=48.01  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+.|+|+.|+|||+|++.++.+.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999999876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=88.44  E-value=0.32  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            688999999999999999998854

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.40  E-value=0.21  Score=54.74  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +++++|++|+|||+++++++...+.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            7999999999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=88.28  E-value=0.24  Score=47.50  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|+||+|||+|+..+..
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.27  E-value=0.23  Score=46.02  Aligned_cols=24  Identities=8%  Similarity=0.318  Sum_probs=20.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+|+++|++|+|||+|+..+...
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999988654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=88.20  E-value=0.24  Score=49.17  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+|+|+||+|||+|+.++...
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            48999999999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=88.09  E-value=0.25  Score=50.36  Aligned_cols=28  Identities=25%  Similarity=0.119  Sum_probs=23.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+++.|++|+|||+|++.+++..+ .+|.
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~   60 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNERP-GILI   60 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred             eEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence            899999999999999999988764 3443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=88.07  E-value=0.25  Score=51.53  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++...+
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            678999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=87.99  E-value=0.25  Score=47.76  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=17.4

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -+++.|+||+|||+|+-.++
T Consensus        32 l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            67889999999999987754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=87.99  E-value=0.2  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .++++|++|+|||+|++.++...+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            8999999999999999999998653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=87.99  E-value=0.25  Score=45.64  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -.+|+|+.|+|||+|++++.-.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            457899999999999999988754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=87.97  E-value=0.12  Score=48.82  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+.|+|++|+|||+|++.++..
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999987654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=87.93  E-value=0.21  Score=49.89  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -++|+|+||+|||+|++.++..+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999988654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=87.93  E-value=0.24  Score=47.55  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ...|+++|++|+|||+|+.++...
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999988654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.92  E-value=0.22  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++.|+|++|+|||+|++.++..
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999887

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=87.81  E-value=0.28  Score=47.24  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+|+|++|+|||+|+..+..-
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCcCHHHHHHHHHhC
Confidence            47999999999999999887643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=87.75  E-value=0.52  Score=49.31  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+|+.|+|||+|++.++.+.+.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCCC
Confidence            6789999999999999999998653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=87.68  E-value=0.19  Score=47.23  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..|+++|+||+|||+|++.+..
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999998864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=87.61  E-value=0.23  Score=50.66  Aligned_cols=24  Identities=13%  Similarity=0.015  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+++.|++|+|||+|++.+++.+.
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=87.61  E-value=0.13  Score=48.10  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=5.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+..+...
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999887644

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=87.59  E-value=0.23  Score=52.11  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++|++|+|||++++.++...+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            799999999999999999998754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=87.47  E-value=0.28  Score=49.12  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|.|+|+||+|||+|+..+...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=87.43  E-value=1  Score=45.58  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|.||+|||+|+.++...
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=87.43  E-value=0.38  Score=53.12  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=87.39  E-value=0.18  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHH
Q psy11213        369 NINICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      .++|+++|++|+|||+|+.++.
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999998874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=87.37  E-value=0.27  Score=51.26  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            577899999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=87.35  E-value=0.26  Score=51.50  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .++++|++|+|||+|++.++...+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            8999999999999999999988653

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=87.34  E-value=0.86  Score=43.03  Aligned_cols=21  Identities=24%  Similarity=0.047  Sum_probs=16.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+++|++|+|||+.+-.++..
T Consensus        11 ~v~~G~mgsGKTT~ll~~a~r   31 (191)
T 1xx6_A           11 EVIVGPMYSGKSEELIRRIRR   31 (191)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            567999999999766655544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=87.23  E-value=0.22  Score=50.66  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+|+|++|+|||+|++.+...
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999999999997653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=87.16  E-value=0.27  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|.|+||+|||++++.+++.
T Consensus        77 iI~I~G~~GSGKSTva~~La~l   98 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKNL   98 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999953

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=87.05  E-value=0.28  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||++++.++...+
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            678899999999999999998854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=86.96  E-value=0.3  Score=49.46  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|++.++.+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            678999999999999999998865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=86.94  E-value=0.63  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|.|+|+||+|||+|+.++...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999998765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=86.88  E-value=0.27  Score=50.11  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++..++
T Consensus        82 iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            578899999999999999999754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=86.85  E-value=0.31  Score=52.02  Aligned_cols=24  Identities=25%  Similarity=0.106  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++||+|+|||++++.+....+
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcC
Confidence            689999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=86.85  E-value=0.62  Score=46.04  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|.|+|+||+|||+|+.++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999998765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=86.79  E-value=0.39  Score=50.91  Aligned_cols=20  Identities=30%  Similarity=0.260  Sum_probs=17.9

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -++|+|+||+|||+|++.++
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            58899999999999999664

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=86.78  E-value=0.28  Score=52.33  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ++|.|+|++|+|||+|++.++...
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCC
Confidence            478999999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=86.70  E-value=0.3  Score=49.46  Aligned_cols=25  Identities=24%  Similarity=0.077  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -|.++|++|+|||+|++.++..++.
T Consensus        33 ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           33 FIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            5788999999999999999998754

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=86.66  E-value=0.4  Score=40.43  Aligned_cols=31  Identities=19%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             eeEEEEEecCCCCeeeecccccccCCCCCCCCccccCC
Q psy11213        254 MTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVN  291 (621)
Q Consensus       254 ~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~  291 (621)
                      +...-|+|.+||+.+     ......|..||.  |++.
T Consensus        63 L~v~p~~C~~CG~~F-----~~~~~kPsrCP~--CkSe   93 (105)
T 2gmg_A           63 LLIKPAQCRKCGFVF-----KAEINIPSRCPK--CKSE   93 (105)
T ss_dssp             EEECCCBBTTTCCBC-----CCCSSCCSSCSS--SCCC
T ss_pred             EEEECcChhhCcCee-----cccCCCCCCCcC--CCCC
Confidence            344459999999875     234456788996  9854

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=86.65  E-value=1  Score=45.91  Aligned_cols=22  Identities=32%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.|.|+.|+|||+|++.+....
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            5789999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=86.65  E-value=0.34  Score=52.41  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..|+|+|.||+|||++++.+++.+
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=86.57  E-value=0.33  Score=49.86  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|.|++|+|||++++.++.++.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999999999999999998864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=86.51  E-value=0.34  Score=45.22  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.-+||.|++|+|||+++..+.+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            347999999999999999888774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=86.48  E-value=0.31  Score=49.62  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||++++.++..++
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999998854

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=86.47  E-value=0.29  Score=51.07  Aligned_cols=33  Identities=12%  Similarity=0.120  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG  403 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~  403 (621)
                      -++|+||||+|||+|+..++..+.    +..|.++..
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            588999999999999999887642    234655543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=86.46  E-value=1.1  Score=45.38  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|.++|.||+|||+|+.++...
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999998754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=86.40  E-value=0.3  Score=51.50  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .++++|++|+|||+|++.+++..
T Consensus       176 r~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          176 RGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCChhHHHHHHHHHH
Confidence            88999999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=86.25  E-value=0.15  Score=48.33  Aligned_cols=23  Identities=35%  Similarity=0.716  Sum_probs=20.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .++|+++|++|+|||+|+.++..
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999987764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=86.16  E-value=0.32  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+++|++|+|||+|+..++..
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47899999999999999998766

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=86.14  E-value=0.3  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHH
Q psy11213        369 NINICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      .++|+++|.||+|||+|+..+.
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            4699999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=86.07  E-value=0.37  Score=47.04  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+-|.|+||+|||++++.+++.+.-..+.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is   38 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQIS   38 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence            46789999999999999999876544443

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=85.94  E-value=1  Score=43.53  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             CcccEEEeCCCCcchhH-HHHHHHhhccc----cEEecC--------CCCccccceEEEe-ecCcccceeeeccceeecC
Q psy11213        368 GNINICLMGDPGVAKSQ-LLSYIERLARR----SQYTTG--------RGSSGVGLTAAVM-KDPITNEMVLEGGALVLAD  433 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~-ll~~ia~~~pr----~~~~~g--------~~~s~~gLta~~~-~~~~~g~~~l~~GalvlAd  433 (621)
                      |.++ +++|+.|+|||+ |++.+.+...+    .++...        .-.|..|+..... .+..+.-+.     .+..+
T Consensus        28 G~I~-vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~-----~i~~~  101 (219)
T 3e2i_A           28 GWIE-CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMT-----HDLTN  101 (219)
T ss_dssp             CEEE-EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGG-----SCCTT
T ss_pred             ceEE-EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHH-----HHhcC
Confidence            4444 568999999999 66776554221    122221        1223333332211 111111010     01124


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQ  460 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q  460 (621)
                      --+++|||+.-++++.-..+.++.+.+
T Consensus       102 ~dvV~IDEaQFf~~~~v~~l~~la~~g  128 (219)
T 3e2i_A          102 VDVIGIDEVQFFDDEIVSIVEKLSADG  128 (219)
T ss_dssp             CSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred             CCEEEEechhcCCHHHHHHHHHHHHCC
Confidence            469999999999887666666655443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=85.78  E-value=0.33  Score=50.07  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||++++.++...+
T Consensus       131 vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          131 VIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=85.77  E-value=0.35  Score=49.17  Aligned_cols=23  Identities=35%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+|+|+||+|||+|+..+..-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999987554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=85.59  E-value=0.43  Score=50.50  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|.+.||+|+|||+|+..+++.++..+..
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~~iis   32 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN   32 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence            47899999999999999999988765544

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=85.50  E-value=0.38  Score=52.90  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .-|+|+|.||+|||++++.+++.+
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=85.47  E-value=0.37  Score=45.74  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..++++|.+|+|||+|+..++..+
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            379999999999999999987663

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=85.59  E-value=0.16  Score=47.66  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .++|+++|+||+|||+|++.+..
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            46999999999999999987754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=85.26  E-value=0.23  Score=46.09  Aligned_cols=25  Identities=16%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.++|++|+|||+|++.++..++.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4789999999999999999998653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=85.20  E-value=0.39  Score=44.69  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=20.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.++|++|+|||+|++.+...++
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcc
Confidence            478999999999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=85.12  E-value=0.3  Score=46.48  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             cccEEEeCCCCcchhHHHHH-HHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSY-IERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~-ia~~  392 (621)
                      .++|+++|++|+|||+|++. +...
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            35899999999999999998 4433

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=85.08  E-value=0.48  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .-+.|+|+||+|||+|++.++...
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            478899999999999999998774

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=85.02  E-value=0.26  Score=46.87  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.|+++|++|+|||+|+..+...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999988654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=84.96  E-value=0.53  Score=45.71  Aligned_cols=25  Identities=16%  Similarity=0.302  Sum_probs=22.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..|.+.|.+|+|||++++.+++.++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3688999999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=84.88  E-value=0.4  Score=48.60  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578899999999999999987753

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=84.86  E-value=0.54  Score=47.92  Aligned_cols=22  Identities=18%  Similarity=0.045  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++++|+||+|||+|+..++..
T Consensus       100 i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A          100 VTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=84.83  E-value=0.45  Score=49.27  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++++|+||+|||+|+..++..
T Consensus       124 i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998775

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=84.79  E-value=0.5  Score=49.04  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=21.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ...|.|+|+||+|||+|++.+....
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=84.71  E-value=0.31  Score=48.20  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ..|.|.|.+|+|||++++.+++.+.
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3689999999999999999998864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=84.68  E-value=0.47  Score=50.85  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.+.|+|+||+|||+|++.+...
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ceEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=84.45  E-value=0.52  Score=43.71  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=20.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.++|++|+|||+|+..++..+.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhH
Confidence            367999999999999999887753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=84.37  E-value=0.44  Score=49.74  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++|+|+.|+|||++++.++..++
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhhcc
Confidence            688999999999999999998854

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=84.35  E-value=0.43  Score=45.29  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=17.9

Q ss_pred             EEEeCCCCcchh-HHHHHHHhh
Q psy11213        372 ICLMGDPGVAKS-QLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS-~ll~~ia~~  392 (621)
                      .+++|+.|+||| .|++++.+.
T Consensus        23 ~fiyG~MgsGKTt~Ll~~i~n~   44 (195)
T 1w4r_A           23 QVILGPMFSGKSTELMRRVRRF   44 (195)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            577999999999 888887665

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=84.30  E-value=0.48  Score=49.46  Aligned_cols=24  Identities=33%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++...+
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            578999999999999999987643

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=84.26  E-value=0.55  Score=42.33  Aligned_cols=23  Identities=30%  Similarity=0.239  Sum_probs=19.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -.+++||.|+|||+|+.++.-.+
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            34789999999999999997653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=84.13  E-value=0.42  Score=48.97  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++++|+||+|||+|+..++..
T Consensus       109 i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHhHHHHHHHHH
Confidence            6889999999999999998765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=84.04  E-value=0.44  Score=49.52  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++++|+||+|||+|+..++..
T Consensus        63 iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999998887754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=83.91  E-value=0.5  Score=47.90  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|+||+|||+|++++...
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            7999999999999999999865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=83.90  E-value=0.95  Score=48.36  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|.++|+||+|||+|+.++...
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Confidence            48999999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=83.89  E-value=0.4  Score=51.80  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|+.|+|||+|+|.++.+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             EEEEECCCCCCHHHHHHHHhCccc
Confidence            688899999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=83.69  E-value=0.53  Score=51.71  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHH--HHhhcc---ccEEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSY--IERLAR---RSQYTTGRG  403 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~--ia~~~p---r~~~~~g~~  403 (621)
                      .++|+|++|+|||+|++.  ++.+.+   ..+|..|..
T Consensus        41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            688999999999999999  455544   345666654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=83.64  E-value=0.54  Score=47.94  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -++++|++|+|||+++..++..+
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHH
Confidence            57899999999999999998875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=83.53  E-value=0.49  Score=51.43  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -++|+|++|+|||+|++.++..+
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHHh
Confidence            68899999999999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=83.47  E-value=0.47  Score=47.06  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|++|+|||+|+..+...
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=83.27  E-value=0.59  Score=47.42  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+|++|+|||+|++.++ ..+
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hhh
Confidence            57889999999999999999 643

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=83.08  E-value=0.54  Score=53.02  Aligned_cols=18  Identities=22%  Similarity=0.348  Sum_probs=14.2

Q ss_pred             cEEEeCCCCcchhHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSY  388 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~  388 (621)
                      -.|+.||||||||+.+-.
T Consensus       207 ~~lI~GPPGTGKT~ti~~  224 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVE  224 (646)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHH
Confidence            468899999999975433

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=82.97  E-value=0.7  Score=47.98  Aligned_cols=25  Identities=36%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+|++|+|||+|++.++.....
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            6789999999999999999998643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=82.94  E-value=0.56  Score=49.94  Aligned_cols=24  Identities=21%  Similarity=0.547  Sum_probs=21.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++.+.+
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            788999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=82.92  E-value=0.41  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|++|+|||+|++.++..++
T Consensus       371 iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          371 TVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHHhhc
Confidence            688999999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=82.74  E-value=0.62  Score=47.54  Aligned_cols=22  Identities=9%  Similarity=0.151  Sum_probs=18.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      =+++.|+||+|||+|+..++..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788999999999999887754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=82.73  E-value=0.5  Score=48.43  Aligned_cols=33  Identities=12%  Similarity=-0.020  Sum_probs=22.6

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc------cccEEecCCCC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA------RRSQYTTGRGS  404 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~------pr~~~~~g~~~  404 (621)
                      +++.||||+|||+|+-.++..+      .+..|.++..+
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s   69 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG   69 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence            8999999999999966554332      23456655443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=82.60  E-value=0.55  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|++.+...
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCC
Confidence            58999999999999999997543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=82.55  E-value=0.55  Score=44.04  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=19.0

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|++|++|+|||++++.++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999998755

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=82.35  E-value=0.69  Score=48.54  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|++++|++|+|||++++.+...
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            39999999999999999998765

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=81.99  E-value=0.79  Score=53.86  Aligned_cols=21  Identities=14%  Similarity=-0.039  Sum_probs=18.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -++|+||.|.|||+++|.++-
T Consensus       664 i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999843

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=81.99  E-value=1.4  Score=47.67  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=21.9

Q ss_pred             CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213        368 GNINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       368 g~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+++|.++|+||+|||+|+.++...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3468999999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=81.96  E-value=0.59  Score=48.53  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..++++|+||+|||+|+..++..
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999998765

>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A

Probab=81.91  E-value=1.6  Score=49.48  Aligned_cols=29  Identities=17%  Similarity=0.007  Sum_probs=19.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +++++||+|+|||..+-......+.++|.
T Consensus       157 ~vlv~apTGSGKT~~al~~l~~~~~gl~l  185 (677)
T 3rc3_A          157 IIFHSGPTNSGKTYHAIQKYFSAKSGVYC  185 (677)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCeEEE
Confidence            89999999999998543322223444443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=81.85  E-value=0.75  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..+.|+|.||+|||+|+.++...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47899999999999999999874

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=81.84  E-value=0.2  Score=46.88  Aligned_cols=21  Identities=43%  Similarity=0.634  Sum_probs=18.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHH
Q psy11213        370 INICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      ++|+++|++|+|||+|++.+.
T Consensus        34 ~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSSB
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999987654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=81.84  E-value=0.61  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+++|++|+|||+|+.++...
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=81.82  E-value=0.68  Score=48.08  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHh--hcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIER--LARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~--~~pr~  396 (621)
                      .|.++|++|+|||+|+.++..  .+|+.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~   63 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRG   63 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence            789999999999999999988  44543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=81.75  E-value=0.57  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|.++|+||+|||+|+.++...
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCC
Confidence            37999999999999999998754

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=81.75  E-value=1.5  Score=46.72  Aligned_cols=17  Identities=24%  Similarity=0.223  Sum_probs=15.0

Q ss_pred             ccEEEeCCCCcchhHHH
Q psy11213        370 INICLMGDPGVAKSQLL  386 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll  386 (621)
                      -++|++||+|+|||..+
T Consensus         3 ~~~lv~a~TGsGKT~~~   19 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRV   19 (431)
T ss_dssp             CEEEEECCTTSCTTTTH
T ss_pred             CEEEEEcCCCCCHHHHH
Confidence            38999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=81.74  E-value=0.73  Score=44.29  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .-|.+.|++|+|||++++.+++.+.
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999988754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=81.69  E-value=0.6  Score=47.32  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .++++|++|+|||+++..++..+.
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999987753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=81.68  E-value=0.81  Score=49.09  Aligned_cols=25  Identities=36%  Similarity=0.559  Sum_probs=22.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -+.|+|++|+|||+|++.++...+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            6889999999999999999998654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=81.47  E-value=0.63  Score=46.23  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++++|.||+|||+|+..+...
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             heEEeCCCCCCHHHHHHHHhcc
Confidence            8999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=81.43  E-value=0.57  Score=51.43  Aligned_cols=24  Identities=29%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -++|.|+||+|||+|++.++...+
T Consensus       283 i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          283 IILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999987754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=81.33  E-value=0.77  Score=48.08  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.+.|+|.||+|||+|++++...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=81.23  E-value=0.62  Score=45.32  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=18.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|.+.|++|+|||++++.+++.++
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999988864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=81.22  E-value=0.77  Score=47.84  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+++.|+||+|||+|+..++..
T Consensus        65 ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999887754

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=81.17  E-value=2.7  Score=40.35  Aligned_cols=22  Identities=14%  Similarity=0.143  Sum_probs=16.1

Q ss_pred             CCeeEecCCCCCChhhhhhhHh
Q psy11213        434 QGICCIDEFDKLPDADRTAIHE  455 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~e  455 (621)
                      -.+++|||+.-++++....|.+
T Consensus       102 ~dvViIDEaQF~~~~~V~~l~~  123 (214)
T 2j9r_A          102 MDVIAIDEVQFFDGDIVEVVQV  123 (214)
T ss_dssp             CCEEEECCGGGSCTTHHHHHHH
T ss_pred             CCEEEEECcccCCHHHHHHHHH
Confidence            4699999999987765544433

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=81.10  E-value=0.7  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.++++|.||+|||+|+.++...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~  143 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKK  143 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEecCCCchHHHHHHHhcC
Confidence            358999999999999999988753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=81.01  E-value=0.93  Score=43.02  Aligned_cols=29  Identities=10%  Similarity=0.069  Sum_probs=25.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|.|.|++|+|||++++.+|+.+....+.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            58899999999999999999987766553

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=80.95  E-value=0.47  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=18.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|.|.|++|+|||++++.+++.++
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999998755

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=80.91  E-value=0.75  Score=48.97  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+||+|||+|++.++...|
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~  182 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHP  182 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCc
Confidence            688999999999999999987754

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=80.90  E-value=2.6  Score=46.53  Aligned_cols=21  Identities=14%  Similarity=0.066  Sum_probs=17.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHH
Q psy11213        370 INICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -++|+++++|+|||..+-.++
T Consensus       199 ~~~ll~~~TGsGKT~~~~~~~  219 (590)
T 3h1t_A          199 KRSLITMATGTGKTVVAFQIS  219 (590)
T ss_dssp             SEEEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEecCCCChHHHHHHHH
Confidence            479999999999999765544

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=80.76  E-value=0.96  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .|+|+|.||+|||++++.+++.+
T Consensus        54 lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           54 TVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999986

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=80.64  E-value=0.62  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+.|.|+.|+|||++++.++..
T Consensus        22 ~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           22 TVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6789999999999999999877

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=80.45  E-value=0.77  Score=51.55  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=18.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..++.||||||||+++..+...
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~  218 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYH  218 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999987665443

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=80.42  E-value=1.2  Score=49.65  Aligned_cols=25  Identities=32%  Similarity=0.587  Sum_probs=22.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .+.++|+.|+|||+|++.++...+.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCccC
Confidence            7899999999999999999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=80.41  E-value=2  Score=46.08  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++.++|+||+|||+|+.++...
T Consensus       196 ~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          196 IQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ceeEEecCCCCCHHHHHHHHhCC
Confidence            48999999999999999998743

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=80.15  E-value=1.2  Score=49.39  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=22.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++...+
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            789999999999999999998864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=80.14  E-value=0.95  Score=46.93  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ..|.++|.||+|||+|+..++..+
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999987664

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=80.06  E-value=0.81  Score=50.01  Aligned_cols=25  Identities=20%  Similarity=0.081  Sum_probs=23.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+|.|.|.+|+|||++++.+++.+.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHH
Confidence            3899999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	621
d1ltla_	239	b.40.4.11 (A:) DNA replication initiator (cdc21/cd	1e-38
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	4e-12
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	3e-04

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 239

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  140 bits (354), Expect = 1e-38
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 10/208 (4%)

Query: 153 FSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQN---RYPQDLMR 209
           + + +FE +  Y +   I  D LD+ +    L +      P ++  +     R    L +
Sbjct: 19  YKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIE-KPDDVIRAAQQAIRNIDRLRK 77

Query: 210 RFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETY 269
             ++           P+RE+++  IGK V V G+V ++ E++P +  A + C  C     
Sbjct: 78  NVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHA 137

Query: 270 QPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRG 329
              S+   T   +C     +         L    S+F+  Q LK+QE  + +  G  PR 
Sbjct: 138 VTQSTNMITEPSLCSECGGR------SFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQ 191

Query: 330 ITVLCRGENTRQVVPGDHVSVSGIFLPL 357
           ITV+   +    + PGD V V+G    +
Sbjct: 192 ITVVLEDDLVDTLTPGDIVRVTGTLRTV 219

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 65.7 bits (159), Expect = 4e-12
 Identities = 49/291 (16%), Positives = 85/291 (29%), Gaps = 58/291 (19%)

Query: 365 VTQGNINICLMGDPGVAKSQLLS-----------------------------------YI 389
           V  G   + + GD G  KS  +                                     I
Sbjct: 24  VDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVI 83

Query: 390 ERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449
            +         G     V     + +     E   E G L  A++G   IDE + L D  
Sbjct: 84  RKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHI 143

Query: 450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509
              + +V +     + + G+  R  AR  ++ + NP            +   L   LL R
Sbjct: 144 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP------------EEGDLRPQLLDR 191

Query: 510 FDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTV 568
           F L   +    D +  +++ +         +    E +P DM +  + ++  +       
Sbjct: 192 FGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA 251

Query: 569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDE 619
           P++           L               R  L +LR + ALA L     
Sbjct: 252 PNTALYDCAALCIALGSD----------GLRGELTLLRSARALAALEGATA 292

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 363 RQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVM-------K 415
           ++++     + + G+ GV K  +   I +L+ RS+      +                 K
Sbjct: 17  KKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 76

Query: 416 DPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNA 475
              T  +  + G   LAD G   +DE  +L    +  +  V+E       + G    +  
Sbjct: 77  GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEV 134

Query: 476 RVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL-IQDKPDRDNDLKLAQHITY 534
            V ILAA N      N K  +++  +    L  R  ++ + I    +R  D+    +   
Sbjct: 135 NVRILAATN-----RNIKELVKEG-KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFL 188

Query: 535 VHKHSRQ--PPTELKPIDMSLVRRY 557
                +              L+  Y
Sbjct: 189 KKFSRKYAKEVEGFTKSAQELLLSY 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	621
d1ltla_	239	DNA replication initiator (cdc21/cdc54) N-terminal	100.0
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.38
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.36
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.3
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.23
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.21
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.21
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.19
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.14
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.11
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.1
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.07
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.01
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.99
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.97
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.95
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.93
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.9
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.85
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.79
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.73
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.6
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.6
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.46
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.43
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.28
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.26
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.95
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.95
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.46
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.27
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.89
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.89
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.83
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.73
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.7
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.31
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.24
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.21
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.11
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.09
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.06
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.0
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.99
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.91
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.89
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.62
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.61
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.57
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.52
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.5
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.46
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.39
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.34
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.73
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.66
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.42
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.87
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.84
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.84
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.75
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.56
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.42
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.31
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.21
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.99
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.99
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.85
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.84
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.73
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.6
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.59
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.56
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.55
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.54
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.43
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.36
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.28
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.28
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.25
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.13
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.12
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.12
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.12
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.08
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.06
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.05
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.01
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.87
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.74
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.47
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.45
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.44
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.36
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.36
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.32
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.3
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.21
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	91.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.15
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.08
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.05
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.91
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.85
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	90.84
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	90.72
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	90.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.67
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.43
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	90.41
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.4
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	90.33
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.27
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	90.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.23
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.16
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.13
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.89
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.87
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.83
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.53
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.5
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.39
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.35
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.21
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.17
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.05
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.02
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	88.97
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	88.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	88.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	88.6
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	88.56
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	88.5
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	88.35
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	88.06
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	87.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	87.6
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	87.37
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	87.26
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.19
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.18
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.02
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	86.73
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.49
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	86.47
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	86.29
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	85.92
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.91
d1vmaa2	213	GTPase domain of the signal recognition particle r	85.51
d1okkd2	207	GTPase domain of the signal recognition particle r	85.47
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	85.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	85.15
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.13
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	85.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	85.07
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	85.03
d2qy9a2	211	GTPase domain of the signal recognition particle r	84.96
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	84.47
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	84.04
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.49
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	82.93
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	82.77
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	82.24
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	82.15
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	82.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	81.53
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	81.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.13
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.62
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.58
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	80.57
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	80.49
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	80.27

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=3.4e-38  Score=314.39  Aligned_cols=201  Identities=26%  Similarity=0.414  Sum_probs=178.0

Q ss_pred             chHHHHHHHHHc--CCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHH
Q psy11213        108 KYSKQLSKLAHR--EQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL  185 (621)
Q Consensus       108 ~Y~~~i~~~~~~--~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~  185 (621)
                      .|.++|.+++..  +.++|+|||+||..|+|+|+++|.++|.+++++|++|+.++.....                    
T Consensus        18 ~y~~~i~~~~~~~~~~~sl~Vd~~~L~~~~~~L~~~l~~~P~~~l~~~~~ai~~~~~~~~--------------------   77 (239)
T d1ltla_          18 DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRK--------------------   77 (239)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCTTCC--------------------
T ss_pred             hHHHHHHHHHHcCCCCcEEEEEHHHHHhhCHHHHHHHHHCHHHHHHHHHHHHHhHHhhcc--------------------
Confidence            499999999877  5689999999999999999999999999999999999876431100                    


Q ss_pred             hhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCC
Q psy11213        186 EQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG  265 (621)
Q Consensus       186 e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg  265 (621)
                                      +      ..++|++.+.+  ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|.+||
T Consensus        78 ----------------~------~~i~vr~~~~~--~~~~ir~l~s~~igkLv~v~GiV~r~s~v~~~~~~~~~~C~~C~  133 (239)
T d1ltla_          78 ----------------N------VDLNIRFSGIS--NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCM  133 (239)
T ss_dssp             ----------------C------CCCEEEEECCS--CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTC
T ss_pred             ----------------C------ceEEEEEcCCC--CccchhccchhhhccEEEEEEEEEEeCCEEEEEEEEEEECCCCC
Confidence                            0      12456676655  57889999999999999999999999999999999999999999


Q ss_pred             CeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccC
Q psy11213        266 AETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPG  345 (621)
Q Consensus       266 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G  345 (621)
                      +.+......+.+.+|..|++  |++    .+|.+..+.|.|+|||+|+|||.|+++|.|++|+++.|+|++||+++++||
T Consensus       134 ~~~~~~~~~~~~~~p~~C~~--C~~----~~f~~~~~~s~~~d~Q~i~iQE~~e~~~~G~~Pr~i~v~l~~dlvd~~~pG  207 (239)
T d1ltla_         134 RHHAVTQSTNMITEPSLCSE--CGG----RSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPG  207 (239)
T ss_dssp             CEEEEECSSSSCCCCSCCTT--TCC----CCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTT
T ss_pred             ceEEEEecCCeecCCccCCC--CCC----cccEEccCcceEeeeEEEEEecccccCCCCCCCcEEEEEEeccccCccCCC
Confidence            99888877788888999986  874    358899999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeeeeccc
Q psy11213        346 DHVSVSGIFLPLL  358 (621)
Q Consensus       346 ~~v~v~Gil~~~~  358 (621)
                      |+|.|+||+.+..
T Consensus       208 d~V~i~GI~~~~~  220 (239)
T d1ltla_         208 DIVRVTGTLRTVR  220 (239)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEee
Confidence            9999999997654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=1.1e-30  Score=272.76  Aligned_cols=248  Identities=21%  Similarity=0.228  Sum_probs=177.4

Q ss_pred             cCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecC----------------------
Q psy11213        344 PGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTG----------------------  401 (621)
Q Consensus       344 ~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g----------------------  401 (621)
                      .||+..+.+++.+....       |.+|+||+|+||||||+|+|.++.++|......+                      
T Consensus        10 ~Gq~~~kral~laa~~~-------~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (333)
T d1g8pa_          10 VGQEDMKLALLLTAVDP-------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNV   82 (333)
T ss_dssp             CSCHHHHHHHHHHHHCG-------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCE
T ss_pred             cCcHHHHHHHHHHHhcc-------CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCc
Confidence            47765555555443322       2349999999999999999999999876544322                      


Q ss_pred             -----------CCCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCC
Q psy11213        402 -----------RGSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG  468 (621)
Q Consensus       402 -----------~~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~g  468 (621)
                                 .+.+..+++++.....  ..|++.+++|.+.+||+||+||||+++++++.+++|+++||+++++|+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g  162 (333)
T d1g8pa_          83 IRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDG  162 (333)
T ss_dssp             EEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTT
T ss_pred             ccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEecccC
Confidence                       2233333444332221  248899999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCC
Q psy11213        469 IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKP  548 (621)
Q Consensus       469 i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~  548 (621)
                      ....+|++|.++||+||.++            .++++++||||+.+.+.+..+.+...++.............. .....
T Consensus       163 ~~~~~p~~f~liaa~Np~~~------------~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  229 (333)
T d1g8pa_         163 LSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAF-LEEWR  229 (333)
T ss_dssp             CCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHH-HHHHH
T ss_pred             ceecCCCCEEEEEecCcccc------------ccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHH-HHHHH
Confidence            99999999999999999975            489999999998887777667776666655433211100000 00000


Q ss_pred             CCHHHHHHHHHHHH-cC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        549 IDMSLVRRYIDLCK-GK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       549 i~~~~lr~~i~~ar-~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      -....+++.+..+. .. .+.+++++...+...+.+++          ..|+|....++|+|+|+|.|++++.|+
T Consensus       230 ~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~----------~~S~R~~~~llrvArtiA~L~gr~~V~  294 (333)
T d1g8pa_         230 PKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG----------SDGLRGELTLLRSARALAALEGATAVG  294 (333)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS----------SCSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred             HHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHHcCCCCCC
Confidence            01122333333333 33 67788888877776654432          147999999999999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=3.8e-12  Score=124.38  Aligned_cols=137  Identities=20%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD  449 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~  449 (621)
                      |+||+||||||||++++.+++.+...... ++......+......          .   -...++.|++|||+++++...
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~i~~iDe~~~~~~~~  103 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL----------A---NSLEEGDILFIDEIHRLSRQA  103 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH----------H---TTCCTTCEEEEETGGGCCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHH----------H---hhccCCCeeeeecccccchhH
Confidence            99999999999999999999986654332 222211111111000          0   012346799999999999999


Q ss_pred             hhhhHhhhcceEEEEecC-----CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        450 RTAIHEVMEQQTISIAKA-----GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       450 ~~~L~eame~q~isi~k~-----gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +..++.+||...+.+...     -....-+.++.+++++|...             ....+.++|+. .++....++.+.
T Consensus       104 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~l~~~~-~~~~~~~~~~~~  169 (239)
T d1ixsb2         104 EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFG-IVEHLEYYTPEE  169 (239)
T ss_dssp             HHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCS-------------SCSCGGGGGCS-EEEECCCCCHHH
T ss_pred             HHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcc-------------cccchhhcccc-eeeEeeccChhh
Confidence            999999999876554221     11233466788888777652             34556777775 555567788877


Q ss_pred             HHHHHHHHHh
Q psy11213        525 DLKLAQHITY  534 (621)
Q Consensus       525 d~~ia~~il~  534 (621)
                      ...+...+..
T Consensus       170 ~~~i~~~~~~  179 (239)
T d1ixsb2         170 LAQGVMRDAR  179 (239)
T ss_dssp             HHHHHHHHHG
T ss_pred             hhHHHHHHHH
Confidence            7777776654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=2.4e-12  Score=125.70  Aligned_cols=134  Identities=22%  Similarity=0.230  Sum_probs=85.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDA  448 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~  448 (621)
                      |+||+||||||||++++.+++.+....+.. +.....            .+..   .+.+ ....+++++|||++++...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~ide~~~~~~~  101 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------------QGDM---AAILTSLERGDVLFIDEIHRLNKA  101 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------------HHHH---HHHHHHCCTTCEEEEETGGGCCHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc------------HHHH---HHHHHhhccCCchHHHHHHHhhhH
Confidence            899999999999999999999866544321 111100            0110   0111 1124689999999999999


Q ss_pred             hhhhhHhhhcceEEEEe--cCCe--E-EecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        449 DRTAIHEVMEQQTISIA--KAGI--M-TRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       449 ~~~~L~eame~q~isi~--k~gi--~-~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      .+..+...|+.+.+...  ..+.  . .....++.+|+|+|...             .+++++++||+. ++..+.++.+
T Consensus       102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~-------------~~~~~~~~r~~~-~~~~~~~~~~  167 (238)
T d1in4a2         102 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFGI-ILELDFYTVK  167 (238)
T ss_dssp             HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCSE-EEECCCCCHH
T ss_pred             HHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCc-------------cccccceeeeeE-EEEecCCCHH
Confidence            99999999998654321  1111  1 11234678888888762             578999999974 4455666666


Q ss_pred             HHHHHHHHHH
Q psy11213        524 NDLKLAQHIT  533 (621)
Q Consensus       524 ~d~~ia~~il  533 (621)
                      ....+.+.+.
T Consensus       168 ~~~~~l~~~~  177 (238)
T d1in4a2         168 ELKEIIKRAA  177 (238)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            6555555544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.30  E-value=1.3e-12  Score=128.83  Aligned_cols=199  Identities=20%  Similarity=0.265  Sum_probs=125.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID  440 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID  440 (621)
                      +.+|||.|+|||||+.+|++++...++..     ..+......   ..|.+. .....++.-....|.+..|+||++|||
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~l~~a~gGtL~l~  101 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLD  101 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCc-ccCCcCCcccccCCHHHccCCCEEEEe
Confidence            45999999999999999999998755431     111111000   011211 111112333345788899999999999


Q ss_pred             CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      |++.++...|..|+.+++++.+.-  .|.......++.+|+|+|....      ....+-.+.+.|++|+....+..++.
T Consensus       102 ~i~~L~~~~Q~~L~~~l~~~~~~~--~~~~~~~~~~~RlI~~s~~~l~------~l~~~~~f~~~L~~~l~~~~i~lPpL  173 (247)
T d1ny5a2         102 EIGELSLEAQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNIK------ELVKEGKFREDLYYRLGVIEIEIPPL  173 (247)
T ss_dssp             SGGGCCHHHHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHHHTTEEEECCCG
T ss_pred             ChHhCCHHHHHHHHHHHHhCCEEE--CCCCCceecCeEEEEecCCCHH------HHHHcCCCcHHHHhhcCeeeecCCCh
Confidence            999999999999999999877543  3444444566889999885310      12233468899999997666655443


Q ss_pred             Ch-HHH-HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213        521 DR-DND-LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA  598 (621)
Q Consensus       521 d~-~~d-~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~  598 (621)
                      .+ .+| ..++++.                     ++++........+.++++|.+.|..+             .++-.+
T Consensus       174 reR~~Di~~l~~~~---------------------l~~~~~~~~~~~~~ls~~al~~L~~~-------------~WPGNl  219 (247)
T d1ny5a2         174 RERKEDIIPLANHF---------------------LKKFSRKYAKEVEGFTKSAQELLLSY-------------PWYGNV  219 (247)
T ss_dssp             GGCHHHHHHHHHHH---------------------HHHHHHHTTCCCCEECHHHHHHHHHS-------------CCTTHH
T ss_pred             hhchhhHhhhhhhh---------------------hhhhhhhcCCCCCCCCHHHHHHHHhC-------------CCCCHH
Confidence            22 122 2333333                     23332222222356899999888764             455678


Q ss_pred             HHHHHHHHHHHH
Q psy11213        599 RNLLAILRLSTA  610 (621)
Q Consensus       599 R~leslirla~A  610 (621)
                      |+|+++++-|-+
T Consensus       220 ~EL~~~l~~a~~  231 (247)
T d1ny5a2         220 RELKNVIERAVL  231 (247)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988885544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.2e-11  Score=124.31  Aligned_cols=183  Identities=11%  Similarity=0.103  Sum_probs=113.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC-Ccc----ccceEEEeecC--cccceeeeccceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSG----VGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~----~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEid  443 (621)
                      ++||+||||+|||.|++.+|+.+.......+.+ .+.    ..|.++.....  ..|.+  -.+.+.....+|+++||++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~--l~~~~~~~~~~vvl~Deie  131 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL--LTDAVIKHPHAVLLLDEIE  131 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTH--HHHHHHHCSSEEEEEETGG
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCCh--hhHHHHhCccchhhhcccc
Confidence            799999999999999999999987654322211 111    11222211000  00100  1112334467899999999


Q ss_pred             CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCC---------CCCCCC-cccc--cCCCHhHhcccc
Q psy11213        444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR---------YNPKRS-IEQN--IQLPAALLSRFD  511 (621)
Q Consensus       444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~---------~~~~~~-~~~~--~~L~~aLlsRFD  511 (621)
                      |+.++.++.|+++++.++++-. .|....+ ..+.+|+|+|-....         +..... ..+.  -.+++.|++|+|
T Consensus       132 Ka~~~V~~~lLqild~G~ltd~-~Gr~vdf-~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid  209 (315)
T d1r6bx3         132 KAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD  209 (315)
T ss_dssp             GSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred             cccchHhhhhHHhhccceecCC-CCCccCc-cceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhh
Confidence            9999999999999999999865 5665544 458899999964221         110000 0111  148999999999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH-cC-CCCCCHHHHHHHHHH
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK-GK-NPTVPSSLTEHIVKA  579 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar-~~-~p~ls~~a~~~l~~~  579 (621)
                      .+++. .+.+.+.-.+|+...+.                     ++....+ +. ...+++++.++|++.
T Consensus       210 ~ii~f-~~l~~~~~~~I~~~~l~---------------------~~~~~l~~~~i~l~~~~~a~~~l~~~  257 (315)
T d1r6bx3         210 NIIWF-DHLSTDVIHQVVDKFIV---------------------ELQVQLDQKGVSLEVSQEARNWLAEK  257 (315)
T ss_dssp             EEEEC-CCCCHHHHHHHHHHHHH---------------------HHHHHHHHTTEEEEECHHHHHHHHHH
T ss_pred             hhhcc-cchhhhHHHHHHHHHHH---------------------HHHHHHHhcCcchhhHHHHHHHHHHh
Confidence            65554 55566666677765542                     2222222 22 677899999888764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=6.3e-12  Score=123.91  Aligned_cols=128  Identities=26%  Similarity=0.291  Sum_probs=81.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      ++||+||||||||++++++++.+...++....   .+...|-+.         . .+. -.+-.|   ..+|++|||+|.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~---------~-~l~-~~f~~a~~~~p~Ii~iDeid~  112 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA---------A-RVR-DLFETAKRHAPCIVFIDEIDA  112 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHH---------H-HHH-HHHHHHTTSSSEEEEEETHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHH---------H-HHH-HHHHHHHHcCCEEEEEEChhh
Confidence            79999999999999999999987655443110   001111110         0 000 001111   246999999987


Q ss_pred             CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +..+              ..+.++..|+.-           .-+.++.||||+|..+             .|++++++  
T Consensus       113 l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~-----------~~~~~vivi~tTn~~~-------------~ld~al~R~~  168 (247)
T d1ixza_         113 VGRKRGSGVGGGNDEREQTLNQLLVEMDGF-----------EKDTAIVVMAATNRPD-------------ILDPALLRPG  168 (247)
T ss_dssp             HHC---------CHHHHHHHHHHHHHHHTC-----------CTTCCEEEEEEESCGG-------------GSCGGGGSTT
T ss_pred             hCccCCCCCCCCcHHHHHHHHHHHHHhhCC-----------CCCCCEEEEEeCCCcc-------------ccCHhHcCCC
Confidence            4211              133455555421           1245678999999763             68999984  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.|+.++..+|.++.+.
T Consensus       169 Rf~-~~i~~~~P~~~eR~~il~~~l~  193 (247)
T d1ixza_         169 RFD-RQIAIDAPDVKGREQILRIHAR  193 (247)
T ss_dssp             SSC-EEEECCSCCHHHHHHHHHHHHT
T ss_pred             CCc-EEEEECCcCHHHHHHHHHHHhc
Confidence            999 5566788999999999988774

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=2e-11  Score=124.37  Aligned_cols=194  Identities=19%  Similarity=0.279  Sum_probs=106.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCc----cccceEEEeecCcccceeeeccceee--cCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSS----GVGLTAAVMKDPITNEMVLEGGALVL--ADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s----~~gLta~~~~~~~~g~~~l~~Galvl--Ad~gi~~IDEid  443 (621)
                      ++||+||||||||.|++++|+.+....+.. +...+    ..|++++..     +...-.++....  ...+|+||||+|
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-----~~~f~~a~~~~~~~~~~~IIf~DEId  125 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII-----RDLTDSAGGAIDAVEQNGIVFIDEID  125 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHH-----HHHHHTTTTCHHHHHHHCEEEEECGG
T ss_pred             eEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccc-----cccchhhhcccccccCCceEEehhhh
Confidence            899999999999999999999865543321 11111    112222111     111112222111  125899999999


Q ss_pred             CCChh------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213        444 KLPDA------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD  511 (621)
Q Consensus       444 k~~~~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD  511 (621)
                      |+.+.            .++.|+..|+..+++. +.. ... ..+..++|+.+..         ......+.++++.|||
T Consensus       126 ki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~-~~~-~i~-~s~ilfi~~ga~~---------~~~~~~~~p~l~~R~~  193 (309)
T d1ofha_         126 KICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG-MVK-TDHILFIASGAFQ---------VARPSDLIPELQGRLP  193 (309)
T ss_dssp             GGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE-EEE-CTTCEEEEEECCS---------SSCGGGSCHHHHHTCC
T ss_pred             hhhhhccCcccchhhhHHHHHhhHHhcCCEEec-CCe-EEE-ccceeEEeccchh---------hcCcccchhhhhhhhh
Confidence            98654            3456777787666554 222 111 2234455554322         1112358899999998


Q ss_pred             EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhc
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARN  589 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~  589 (621)
                       ..+....++.....+|.....                 ......+.......  .-.+++.+.......+..+......
T Consensus       194 -~~i~~~~~~~~~~~~Il~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (309)
T d1ofha_         194 -IRVELTALSAADFERILTEPH-----------------ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN  255 (309)
T ss_dssp             -EEEECCCCCHHHHHHHHHSST-----------------TCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred             -eeeeccCCCHHHHHHHHHHHH-----------------HHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHhhcchh
Confidence             555567788877777654211                 11222222222221  4456677777666655544443221


Q ss_pred             CCCCCccCHHHHHHHH
Q psy11213        590 SRDMSYTSARNLLAIL  605 (621)
Q Consensus       590 ~~~~~~~t~R~lesli  605 (621)
                            ...|.|.+++
T Consensus       256 ------~GaR~L~~~i  265 (309)
T d1ofha_         256 ------IGARRLHTVM  265 (309)
T ss_dssp             ------CTTHHHHHHH
T ss_pred             ------cCchHHHHHH
Confidence                  3467776655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2e-11  Score=120.76  Aligned_cols=128  Identities=24%  Similarity=0.273  Sum_probs=82.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      ++||+||||||||++++++|+.+....+.....   +...|-+.        .  .+. -.+-.|   ...|++|||+|.
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~--------~--~l~-~~f~~A~~~~P~il~iDeiD~  115 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA--------S--RVR-DMFEQAKKAAPCIIFIDEIDA  115 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCH--------H--HHH-HHHHHHHTTCSEEEEETTHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHH--------H--HHH-HHHHHHHHcCCEEEEEEChhh
Confidence            799999999999999999999877655432111   11111110        0  000 001111   236999999987


Q ss_pred             CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213        445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--  508 (621)
Q Consensus       445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--  508 (621)
                      +...              ..+.++..|+.-           .-+.++.||||+|..+             .|+++|++  
T Consensus       116 l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~-----------~~~~~v~vIatTn~~~-------------~ld~al~R~g  171 (256)
T d1lv7a_         116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPG  171 (256)
T ss_dssp             HTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTT
T ss_pred             hCccCCCCCCCCcHHHHHHHHHHHHHhhCC-----------CCCCCEEEEEeCCCcc-------------cCCHhHcCCC
Confidence            4221              123455555421           1234578999999764             58999986  


Q ss_pred             cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213        509 RFDLLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       509 RFDli~~~~d~~d~~~d~~ia~~il~  534 (621)
                      ||| ..+.++.|+.++...|.++.+.
T Consensus       172 Rfd-~~i~i~~P~~~~R~~il~~~l~  196 (256)
T d1lv7a_         172 RFD-RQVVVGLPDVRGREQILKVHMR  196 (256)
T ss_dssp             SSC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred             CCC-EEEECCCcCHHHHHHHHHHhcc
Confidence            999 5667788999999999987764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=5.5e-11  Score=121.20  Aligned_cols=182  Identities=13%  Similarity=0.172  Sum_probs=107.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc---cccEEecCC-CCcc----ccceEEEeecCcccceeeeccc----eeecCCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA---RRSQYTTGR-GSSG----VGLTAAVMKDPITNEMVLEGGA----LVLADQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~---pr~~~~~g~-~~s~----~gLta~~~~~~~~g~~~l~~Ga----lvlAd~gi~~  438 (621)
                      .+||+||||+|||.+++.+|+.+   ....+..+. ..+.    ..|.++..-  ..|  .-+.|.    +-....+|++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~g--yvG--~~~~~~l~~~~~~~p~~Vvl  130 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG--YVG--YEEGGQLTEAVRRRPYSVIL  130 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC------------------CHHHHHHHCSSEEEE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCC--CcC--cccCChHHHHHHhCCCcEEE
Confidence            68999999999999999999986   222222211 1111    113322110  001  011222    2223469999


Q ss_pred             ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC-------CCCCCCCc----cc--ccCCCHh
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG-------RYNPKRSI----EQ--NIQLPAA  505 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g-------~~~~~~~~----~~--~~~L~~a  505 (621)
                      +|||+|+.++.++.|+++|+.++++-. .|....+ .++.+|+|+|-...       .+......    ..  .-.++++
T Consensus       131 ~DEieK~~~~v~~~ll~~l~~g~~~~~-~gr~v~~-~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pE  208 (315)
T d1qvra3         131 FDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE  208 (315)
T ss_dssp             ESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHH
T ss_pred             EehHhhcCHHHHHHHHHHhccCceeCC-CCcEecC-cceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHH
Confidence            999999999999999999999998753 4555543 56899999996310       00000000    00  1249999


Q ss_pred             HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q psy11213        506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKA  579 (621)
Q Consensus       506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~  579 (621)
                      |++|||.++.. ...+.+.-.+|+...+.                  .+++.  ++.+. ...+++++.++|++.
T Consensus       209 flnRid~Ii~F-~~L~~~~~~~I~~~~l~------------------~l~~r--l~~~~i~l~i~~~~~~~L~~~  262 (315)
T d1qvra3         209 FLNRLDEIVVF-RPLTKEQIRQIVEIQLS------------------YLRAR--LAEKRISLELTEAAKDFLAER  262 (315)
T ss_dssp             HHHTCSBCCBC-CCCCHHHHHHHHHHHHH------------------HHHHH--HHTTTCEEEECHHHHHHHHHH
T ss_pred             HHhcCCeeeec-cchhhhhhHHHHHHHHH------------------HHHHH--HHhccccccccHHHHHHHHHh
Confidence            99999966554 55566666666665432                  12211  12222 567788888888764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.11  E-value=9.2e-11  Score=121.76  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=112.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCc---ccceeeeccceeecCCCeeEecCCCC--
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPI---TNEMVLEGGALVLADQGICCIDEFDK--  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~---~g~~~l~~GalvlAd~gi~~IDEidk--  444 (621)
                      |+||+||+|+|||.|+|++|+.+...... .....+..|..+   ++..   +.-....+|.+-.+..||+++||++|  
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e~gyvg---~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~  146 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVG---EDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS  146 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred             ceeeeCCCCccHHHHHHHHHhhcccceeehhhhhcccchhhH---hhhccchhhhhhhchhHHHHhhcccchhhhhhhhc
Confidence            89999999999999999999987544322 122223333322   2211   11111123344456789999999999  


Q ss_pred             ------------CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---------------------CCCCC
Q psy11213        445 ------------LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---------------------YGRYN  491 (621)
Q Consensus       445 ------------~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---------------------~g~~~  491 (621)
                                  ..++.++.|+..|+.+.+.+...+....-..++.++.|+|-.                     ..-|.
T Consensus       147 ~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~  226 (364)
T d1um8a_         147 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  226 (364)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             cccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhccccccccc
Confidence                        667789999999998776553322222222234445555531                     00011


Q ss_pred             CCCCc---------------ccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHH
Q psy11213        492 PKRSI---------------EQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRR  556 (621)
Q Consensus       492 ~~~~~---------------~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~  556 (621)
                      .....               .-...+.|.|+.|||.+ +.+...+.+.-.+|+..-.                 ...+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~i-v~f~~L~~~~l~~Il~~~~-----------------~~l~kq  288 (364)
T d1um8a_         227 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVL-STLDSISLEAMVDILQKPK-----------------NALIKQ  288 (364)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSST-----------------TCHHHH
T ss_pred             ccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcch-hhHhhhhHHHHHHHHHHHH-----------------HHHHHH
Confidence            10000               01235889999999954 5556777777666664211                 124566


Q ss_pred             HHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213        557 YIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       557 ~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslir  606 (621)
                      |....+..  .-.+++++.++|++.-.+           ..+..|.|.++|.
T Consensus       289 ~~~~l~~~gi~L~~td~a~~~la~~g~d-----------~~~GAR~L~riie  329 (364)
T d1um8a_         289 YQQLFKMDEVDLIFEEEAIKEIAQLALE-----------RKTGARGLRAIIE  329 (364)
T ss_dssp             HHHHHHTTTCEEEECHHHHHHHHHHHHH-----------TTCTGGGHHHHHH
T ss_pred             HHHHHHhCCcEEEECHHHHHHHHHhccC-----------CCCCchHHHHHHH
Confidence            66554433  566799999999885332           1145777777664

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.1e-11  Score=123.13  Aligned_cols=128  Identities=25%  Similarity=0.284  Sum_probs=83.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk  444 (621)
                      .+||+||||||||++++++++.+...++.....   ....|.+.          ..+. ..+-.|   ...|++|||+|.
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~----------~~l~-~~f~~A~~~~p~il~iDeid~  108 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE----------SNLR-KAFEEAEKNAPAIIFIDELDA  108 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHH----------HHHH-HHHHHHHHTCSEEEEESSGGG
T ss_pred             eeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHH----------HHHH-HHHHHHHhcCCeEEEehhhhh
Confidence            699999999999999999999977766542211   11111110          0000 000011   247999999999


Q ss_pred             CChhhh-----------hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        445 LPDADR-----------TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       445 ~~~~~~-----------~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      +.....           ..++..++.           ...+.++.||||+|...             .+++++++  |||
T Consensus       109 l~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vlvi~tTn~~~-------------~ld~al~r~gRfd  164 (258)
T d1e32a2         109 IAPKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPN-------------SIDPALRRFGRFD  164 (258)
T ss_dssp             TCCHHHHCCCTTHHHHHHHHHHHHHT-----------CCCSSCEEEEEEESCGG-------------GSCGGGTSTTSSC
T ss_pred             hccCCCCCCCchHHHHHHHhcccccc-----------ccccCCccEEEeCCCcc-------------ccchhhhhccccc
Confidence            764322           222222221           12355688999999774             68999998  999


Q ss_pred             EEEEecCCCChHHHHHHHHHHHh
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~  534 (621)
                       ..+.++.|+.+....|.++.++
T Consensus       165 -~~i~~~~P~~~~R~~il~~~l~  186 (258)
T d1e32a2         165 -REVDIGIPDATGRLEILQIHTK  186 (258)
T ss_dssp             -EEEECCCCCHHHHHHHHHHTTT
T ss_pred             -ceeECCCCCHHHHHHHhhhhcc
Confidence             5677799999999999987764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=3e-10  Score=110.96  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=77.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCc------------cccceEEEeecCcc-cce--eeeccceeecCC-
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSS------------GVGLTAAVMKDPIT-NEM--VLEGGALVLADQ-  434 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s------------~~gLta~~~~~~~~-g~~--~l~~GalvlAd~-  434 (621)
                      ++||+||||+|||++++.+++.+.......+....            ...+......+... ...  .++.......++ 
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~  115 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR  115 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCC
Confidence            38999999999999999998875432211111000            00010000000000 000  011111111223 


Q ss_pred             -CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        435 -GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       435 -gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                       -|++|||+|+|+.+.+++|+..||+.             +..+.+|.++|...             .+.+++.|||  .
T Consensus       116 ~kviiIde~d~l~~~~q~~Llk~lE~~-------------~~~~~~il~tn~~~-------------~i~~~i~SRc--~  167 (239)
T d1njfa_         116 FKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC--L  167 (239)
T ss_dssp             SEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS--E
T ss_pred             CEEEEEECcccCCHHHHHHHHHHHhcC-------------CCCeEEEEEcCCcc-------------ccChhHhhhh--c
Confidence             38999999999999999999999862             34456777777542             5889999999  4


Q ss_pred             EEecCCCChHHHHHHHHHH
Q psy11213        514 WLIQDKPDRDNDLKLAQHI  532 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~i  532 (621)
                      .+..+.++.++-...+.++
T Consensus       168 ~i~~~~~~~~~i~~~l~~i  186 (239)
T d1njfa_         168 QFHLKALDVEQIRHQLEHI  186 (239)
T ss_dssp             EEECCCCCHHHHHHHHHHH
T ss_pred             ccccccCcHHHhhhHHHHH
Confidence            5555556555544444433

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.4e-10  Score=112.08  Aligned_cols=198  Identities=16%  Similarity=0.191  Sum_probs=124.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeec----cceeecCCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEG----GALVLADQG  435 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~----GalvlAd~g  435 (621)
                      -|+||+|+||+|||.+++.+++....          .++....+.    |.++..   ..|+|.-.-    ..+..+.+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~----liag~~---~~g~~e~r~~~i~~~~~~~~~i  112 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----LLAGTK---YRGDFEKRFKALLKQLEQDTNS  112 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------CCCC---CSSCHHHHHHHHHHHHSSSSCE
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech----HhccCc---cchhHHHHHHHHHHHhhccCCc
Confidence            39999999999999999999876322          122211111    221111   134442110    111223456


Q ss_pred             eeEecCCCCCChh---------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        436 ICCIDEFDKLPDA---------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       436 i~~IDEidk~~~~---------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      |+||||++.+-..         .-+.|..++..+               ...+|||+.|.+        +..-++-.++|
T Consensus       113 IlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg---------------~i~vIgatT~ee--------y~~~~e~d~al  169 (268)
T d1r6bx2         113 ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVIGSTTYQE--------FSNIFEKDRAL  169 (268)
T ss_dssp             EEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------------CCEEEEEECHHH--------HHCCCCCTTSS
T ss_pred             eEEecchHHHhcCCCCCCccccHHHHhhHHHhCC---------------CCeEEEeCCHHH--------HHHHHhhcHHH
Confidence            8999999987321         122333344433               367899999873        45556778999


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR  584 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR  584 (621)
                      .+||  -.+.++.|+.++-.+|.+.+.......     ..-.++.+.++..+.++.++  +-.+++.|.+.|-+.-...|
T Consensus       170 ~rrF--~~I~V~Eps~e~t~~IL~~~~~~~e~~-----h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~  242 (268)
T d1r6bx2         170 ARRF--QKIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR  242 (268)
T ss_dssp             GGGE--EEEECCCCCHHHHHHHHHHHHHHHHHH-----HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHH
T ss_pred             Hhhh--cccccCCCCHHHHHHHHHHhhHHHhcc-----CCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHH
Confidence            9999  677889999999999988765443211     12357899999999999986  77899999998877655554


Q ss_pred             HHhhcCCCCCccCHHHHHHHH
Q psy11213        585 KVARNSRDMSYTSARNLLAIL  605 (621)
Q Consensus       585 ~~~~~~~~~~~~t~R~lesli  605 (621)
                      -... ......++...+++++
T Consensus       243 ~~~~-~~~~~~i~~~di~~~i  262 (268)
T d1r6bx2         243 LMPV-SKRKKTVNVADIESVV  262 (268)
T ss_dssp             HSSS-CCCCCSCCHHHHHHHH
T ss_pred             hhcc-ccCcccCCHHHHHHHH
Confidence            4321 1122335666665554

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=7.7e-11  Score=113.86  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=74.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      |+||+||||+|||++++.+++.+...     ++... .++..|...  ...  ..........+.....-+++|||++.+
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~-~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~kiiiiDe~d~~  111 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN-ASDDRGIDV--VRN--QIKDFASTRQIFSKGFKLIILDEADAM  111 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC-TTSCCSHHH--HHT--HHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEec-ccccCCeee--eec--chhhccccccccCCCeEEEEEeccccc
Confidence            89999999999999999999874211     11100 000000000  000  000000000111112239999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ....+.+|+.+|++.             +..+.++.++|...             .+.+++.|||  ..+-...++.++-
T Consensus       112 ~~~~~~~Ll~~le~~-------------~~~~~~~~~~~~~~-------------~i~~~i~sr~--~~i~~~~~~~~~i  163 (227)
T d1sxjc2         112 TNAAQNALRRVIERY-------------TKNTRFCVLANYAH-------------KLTPALLSQC--TRFRFQPLPQEAI  163 (227)
T ss_dssp             CHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTS--EEEECCCCCHHHH
T ss_pred             hhhHHHHHHHHhhhc-------------ccceeeccccCcHH-------------HhHHHHHHHH--hhhcccccccccc
Confidence            999999999999863             23456677777652             6899999999  3444444544444


Q ss_pred             HHHHHHH
Q psy11213        526 LKLAQHI  532 (621)
Q Consensus       526 ~~ia~~i  532 (621)
                      .++..++
T Consensus       164 ~~~l~~I  170 (227)
T d1sxjc2         164 ERRIANV  170 (227)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            4444433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.2e-09  Score=105.69  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc------ccEE-ecCCCCccccceEEEeecCcccceeeeccc-----eeecCCCeeE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR------RSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGA-----LVLADQGICC  438 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~Ga-----lvlAd~gi~~  438 (621)
                      |+||.||||+|||++++.+++.+.      ...+ ..+........+.....+...... ...+.     .......|++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vii  113 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTV-SKPSKHDLENYPCPPYKIII  113 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCC-CCCCTTHHHHSCCCSCEEEE
T ss_pred             eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhhh-hhhhHHHHhhccccCceEEE
Confidence            799999999999999999998741      1111 111111110000000000000000 00000     0111234899


Q ss_pred             ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213        439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD  518 (621)
Q Consensus       439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d  518 (621)
                      |||++.+....++.++..++...             ..+.++.++|...             .+.+++.|||  ..+-.+
T Consensus       114 iDe~d~l~~~~~~~l~~~~~~~~-------------~~~~~i~~~~~~~-------------~~~~~l~sr~--~~i~f~  165 (237)
T d1sxjd2         114 LDEADSMTADAQSALRRTMETYS-------------GVTRFCLICNYVT-------------RIIDPLASQC--SKFRFK  165 (237)
T ss_dssp             ETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHHHS--EEEECC
T ss_pred             EecccccCHHHHHHHhhcccccc-------------ccccccccccccc-------------cccccccchh--hhhccc
Confidence            99999999999999999887532             2344555555441             5789999999  445567


Q ss_pred             CCChHHHHHHHHHHH
Q psy11213        519 KPDRDNDLKLAQHIT  533 (621)
Q Consensus       519 ~~d~~~d~~ia~~il  533 (621)
                      .++.+.-..++++++
T Consensus       166 ~~~~~~~~~~L~~i~  180 (237)
T d1sxjd2         166 ALDASNAIDRLRFIS  180 (237)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhh
Confidence            777766666665554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=2.1e-10  Score=111.16  Aligned_cols=129  Identities=19%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EE-ecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      |+||+||||+|||++++.+++.+...     .+ ..+.  +..+..  ..+.. -.+. ............|+++||++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s--~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~iilide~d~  120 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--DERGIN--VIREK-VKEF-ARTKPIGGASFKIIFLDEADA  120 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT--CHHHHH--TTHHH-HHHH-HHSCCGGGCSCEEEEEETGGG
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecC--cccchh--HHHHH-HHHH-HhhhhccCCCceEEeehhhhh
Confidence            89999999999999999999874321     11 1110  000000  00000 0000 000111123467999999999


Q ss_pred             CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213        445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN  524 (621)
Q Consensus       445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~  524 (621)
                      +....+.+|+..|+..             ...+.+++++|...             .++++|.|||.  .+....++...
T Consensus       121 ~~~~~~~~ll~~l~~~-------------~~~~~~i~~~n~~~-------------~i~~~l~sR~~--~i~~~~~~~~~  172 (231)
T d1iqpa2         121 LTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA--IFRFRPLRDED  172 (231)
T ss_dssp             SCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHTEE--EEECCCCCHHH
T ss_pred             cchhHHHHHhhhcccC-------------CcceEEEeccCChh-------------hchHhHhCccc--cccccccchhh
Confidence            9999999999998753             23456778887652             58899999994  44555666666


Q ss_pred             HHHHHHHHH
Q psy11213        525 DLKLAQHIT  533 (621)
Q Consensus       525 d~~ia~~il  533 (621)
                      ...+++.++
T Consensus       173 ~~~~l~~~~  181 (231)
T d1iqpa2         173 IAKRLRYIA  181 (231)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=6.7e-10  Score=107.06  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL  445 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~  445 (621)
                      |+||.||||+|||++++.+++.+...     ++..... ...|..  ...+. ...+....-........+++|||+|.+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~-~~~~~~--~i~~~-~~~~~~~~~~~~~~~~kviiiDe~d~~  113 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS-DDRGID--VVRNQ-IKHFAQKKLHLPPGKHKIVILDEADSM  113 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT-SCCSHH--HHHTH-HHHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcccccccccccccc-ccCCce--ehhhH-HHHHHHhhccCCCcceEEEEEeccccc
Confidence            89999999999999999998874321     1111110 000000  00000 000000000011112359999999999


Q ss_pred             ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213        446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND  525 (621)
Q Consensus       446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d  525 (621)
                      ....+.+|+..|+..             +..+.++.++|...             .+.++|.|||  ..+-...++.+.-
T Consensus       114 ~~~~~~~ll~~~e~~-------------~~~~~~i~~~~~~~-------------~i~~~l~sr~--~~i~~~~~~~~~i  165 (224)
T d1sxjb2         114 TAGAQQALRRTMELY-------------SNSTRFAFACNQSN-------------KIIEPLQSQC--AILRYSKLSDEDV  165 (224)
T ss_dssp             CHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTS--EEEECCCCCHHHH
T ss_pred             chhHHHHHhhhcccc-------------ccceeeeeccCchh-------------hhhhHHHHHH--HHhhhcccchhhh
Confidence            999999999999852             34456666777652             5889999999  4456666666655


Q ss_pred             HHHHHHHH
Q psy11213        526 LKLAQHIT  533 (621)
Q Consensus       526 ~~ia~~il  533 (621)
                      ..++..++
T Consensus       166 ~~~l~~i~  173 (224)
T d1sxjb2         166 LKRLLQII  173 (224)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=3.9e-10  Score=112.03  Aligned_cols=131  Identities=19%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee---ecCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV---LADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv---lAd~gi~~IDEidk~~~  447 (621)
                      +|||+||||||||+|++++|+.+....+......    +.+. ...  ..+..++ -.+-   ....+|++|||+|.+-.
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~----l~~~-~~~--~~~~~l~-~~f~~A~~~~p~il~ideid~l~~  114 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPE----LLTM-WFG--ESEANVR-EIFDKARQAAPCVLFFDELDSIAK  114 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHH----HHTS-CTT--THHHHHH-HHHHHHHHTCSEEEEESSGGGTCC
T ss_pred             eEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHH----hhhc-ccc--chHHHHH-HHHHHHHhcCCcceeHHhhhhccc
Confidence            7999999999999999999999877665432110    0000 000  0000010 0000   11348999999998753


Q ss_pred             hh--------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213        448 AD--------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD  511 (621)
Q Consensus       448 ~~--------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD  511 (621)
                      +.              .+.++..|+.         ..  -+.+..||||+|-..             .|++++++  |||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~--~~~~v~vi~ttn~~~-------------~ld~al~r~gRf~  170 (265)
T d1r7ra3         115 ARGGNIGDGGGAADRVINQILTEMDG---------MS--TKKNVFIIGATNRPD-------------IIDPAILRPGRLD  170 (265)
T ss_dssp             HHHHCCCTTHHHHHHHHHHHHHTCC-----------------CCEEEECCBSCT-------------TTSCGGGSSTTSE
T ss_pred             cCCCcCCCCcHHHHHHHHHHHHHhhC---------cC--CCCCEEEEEeCCCch-------------hCCHHHhCCCCcc
Confidence            31              2344444431         11  123478999999763             68999986  998


Q ss_pred             EEEEecCCCChHHHHHHHHHHHh
Q psy11213        512 LLWLIQDKPDRDNDLKLAQHITY  534 (621)
Q Consensus       512 li~~~~d~~d~~~d~~ia~~il~  534 (621)
                       ..+.++.|+.++...|.+..+.
T Consensus       171 -~~i~~~~p~~~~R~~il~~~l~  192 (265)
T d1r7ra3         171 -QLIYIPLPDEKSRVAILKANLR  192 (265)
T ss_dssp             -EEEECCCCCCHHHHHHHHHHTT
T ss_pred             -EEEEecchHHHHHHHHHHHHhc
Confidence             5557799999999999987654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=3.8e-09  Score=102.97  Aligned_cols=71  Identities=14%  Similarity=0.241  Sum_probs=54.2

Q ss_pred             CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213        435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW  514 (621)
Q Consensus       435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~  514 (621)
                      .+++|||+|.|....+..|+..||+.             +..+.+|+++|...             .++++|.|||  ..
T Consensus       133 ~iiiide~d~l~~~~~~~l~~~~e~~-------------~~~~~~Il~tn~~~-------------~i~~~l~sR~--~~  184 (252)
T d1sxje2         133 KCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC--LL  184 (252)
T ss_dssp             EEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS--EE
T ss_pred             eEEEeccccccccccchhhhcccccc-------------cccccceeeecccc-------------chhhhhhcch--he
Confidence            48999999999999999999999852             34466788888763             5899999999  34


Q ss_pred             EecCCCChHHHHHHHHHHH
Q psy11213        515 LIQDKPDRDNDLKLAQHIT  533 (621)
Q Consensus       515 ~~~d~~d~~~d~~ia~~il  533 (621)
                      +-...++.++-.++..+++
T Consensus       185 i~~~~~~~~~~~~~l~~i~  203 (252)
T d1sxje2         185 IRCPAPSDSEISTILSDVV  203 (252)
T ss_dssp             EECCCCCHHHHHHHHHHHH
T ss_pred             eeecccchhhHHHHHHHHH
Confidence            4557777766666666554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.85  E-value=6.2e-10  Score=109.28  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~  447 (621)
                      .|||+||||||||++++++|+.+...++.......-.|..+.      +..-.+ ...+-.|   ..+|++|||+|++.+
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~------~~~~~i-~~if~~A~~~~p~il~iDEid~l~~  114 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET------AKCQAM-KKIFDDAYKSQLSCVVVDDIERLLD  114 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH------HHHHHH-HHHHHHHHTSSEEEEEECCHHHHTT
T ss_pred             EEEEECcCCCCHHHHHHHHhhccccccccccccccccccccc------chhhhh-hhhhhhhhhcccceeehhhhhhHhh
Confidence            799999999999999999999876655432211111111110      000000 0011112   237999999987422


Q ss_pred             ----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHh-HhccccEEEEe
Q psy11213        448 ----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAA-LLSRFDLLWLI  516 (621)
Q Consensus       448 ----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~a-LlsRFDli~~~  516 (621)
                                ...+.|+..|+...          .-..++.||||+|..+             .|+++ +.+|||..+.+
T Consensus       115 ~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~tTn~~~-------------~ld~~~~~~rF~~~i~~  171 (246)
T d1d2na_         115 YVPIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV  171 (246)
T ss_dssp             CBTTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC
T ss_pred             hcccccchhHHHHHHHHHHhcCCC----------ccccceeeeeccCChh-------------hccchhhcCccceEEec
Confidence                      22345555555321          1123578899999642             24443 67899976655

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.79  E-value=1e-10  Score=118.58  Aligned_cols=134  Identities=11%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc-cEEecCCCCccccceEEEeecCcccceeeecccee-e-cCCCeeEecCCCCCCh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR-SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV-L-ADQGICCIDEFDKLPD  447 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr-~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv-l-Ad~gi~~IDEidk~~~  447 (621)
                      ++||+||||||||.|++++|..+.. ..+.+        +.++-..+..-|++.-.-..++ . ....|+||||||.+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~--------~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid~~~~  196 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYAT--------VRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIG  196 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEE--------EEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEE--------EEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhhhhcc
Confidence            7778999999999999999998542 11111        1111111111122110000010 0 1357999999999865


Q ss_pred             hhhhhhHhhhcceEEEE---ecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh------ccccEEEEecC
Q psy11213        448 ADRTAIHEVMEQQTISI---AKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL------SRFDLLWLIQD  518 (621)
Q Consensus       448 ~~~~~L~eame~q~isi---~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl------sRFDli~~~~d  518 (621)
                      .-.......+.+++++-   .-.|  ...+..+.||||+||.              .+++++.      +|||.. +.++
T Consensus       197 ~r~~~~~~~~~~r~v~~lL~e~dg--~~~~~~v~viaatN~~--------------~~~~~i~~~~~r~~Rf~~~-v~v~  259 (321)
T d1w44a_         197 AAGGNTTSGGISRGAFDLLSDIGA--MAASRGCVVIASLNPT--------------SNDDKIVELVKEASRSNST-SLVI  259 (321)
T ss_dssp             ----------CCHHHHHHHHHHHH--HHHHHTCEEEEECCCC--------------CCCHHHHHHHHHHHHHSCS-EEEE
T ss_pred             ccccCCCCCcchhhhhhhhhhccc--cccCCCeEEEEeCCCc--------------ccccchhhhhhccCcccce-eecC
Confidence            44333322222221110   0011  1123458999999986              3455543      699855 5557


Q ss_pred             CCChHHHHHHH
Q psy11213        519 KPDRDNDLKLA  529 (621)
Q Consensus       519 ~~d~~~d~~ia  529 (621)
                      .||.+.+.+|+
T Consensus       260 ~pd~~~r~~il  270 (321)
T d1w44a_         260 STDVDGEWQVL  270 (321)
T ss_dssp             ECSSTTEEEEE
T ss_pred             CCChHHHHHHH
Confidence            77777665554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.7e-08  Score=96.06  Aligned_cols=62  Identities=21%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      ..|++|||+|+|+.+.+++|+..||+-             +..+.+|.++|...             .+.+++.||+  .
T Consensus       109 ~kviIide~d~l~~~a~n~Llk~lEep-------------~~~~~fIl~t~~~~-------------~ll~tI~SRc--~  160 (207)
T d1a5ta2         109 AKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRC--R  160 (207)
T ss_dssp             CEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS--E
T ss_pred             cceEEechhhhhhhhhhHHHHHHHHhh-------------cccceeeeeecChh-------------hhhhhhccee--E
Confidence            459999999999999999999999972             44566666666542             5899999999  4


Q ss_pred             EEecCCCChH
Q psy11213        514 WLIQDKPDRD  523 (621)
Q Consensus       514 ~~~~d~~d~~  523 (621)
                      .+-...++.+
T Consensus       161 ~i~~~~~~~~  170 (207)
T d1a5ta2         161 LHYLAPPPEQ  170 (207)
T ss_dssp             EEECCCCCHH
T ss_pred             EEecCCCCHH
Confidence            4444555543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=8.3e-09  Score=107.37  Aligned_cols=178  Identities=19%  Similarity=0.224  Sum_probs=106.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc-----c-----ccEEecCCCCccccceEEEeecCcccceeeec-cc---eeecCC-
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA-----R-----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG-GA---LVLADQ-  434 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~-----p-----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~-Ga---lvlAd~-  434 (621)
                      -|++|+|+||+|||.++..+|+..     |     +.+|....+.    |.++..   ..|+|.-.- +.   +..+++ 
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~----l~ag~~---~~g~~e~r~~~i~~~~~~~~~~  116 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS----LLAGAK---YRGEFEERLKAVIQEVVQSQGE  116 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------CHHHHHHHHHHHHHTTCSS
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh----hhcccC---cchhHHHHHHHHHHHhccCCCc
Confidence            389999999999999998887652     1     1222222111    222111   124442110 00   111223 


Q ss_pred             CeeEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        435 GICCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       435 gi~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      -|+||||++.+-..        .-+.|..+|..               ....+|||+.|.+        +. .+.=.++|
T Consensus       117 ~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r---------------g~~~~I~~tT~~e--------y~-~~e~d~al  172 (387)
T d1qvra2         117 VILFIDELHTVVGAGKAEGAVDAGNMLKPALAR---------------GELRLIGATTLDE--------YR-EIEKDPAL  172 (387)
T ss_dssp             EEEEECCC-------------------HHHHHT---------------TCCCEEEEECHHH--------HH-HHTTCTTT
T ss_pred             eEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC---------------CCcceeeecCHHH--------HH-HhcccHHH
Confidence            36999999886321        11233333333               2367899998873        33 24457899


Q ss_pred             hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR  584 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR  584 (621)
                      .+||  -.+.++.|+.+.-..|.+.+........     .-.++.+.++..+..+.++  .-.+|+.|.+.|-..-...|
T Consensus       173 ~rrF--~~v~v~ep~~~~~~~il~~~~~~~e~~h-----~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a~~~  245 (387)
T d1qvra2         173 ERRF--QPVYVDEPTVEETISILRGLKEKYEVHH-----GVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLR  245 (387)
T ss_dssp             CSCC--CCEEECCCCHHHHHHHHHHHHHHHHHHT-----TCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred             HHhc--ccccCCCCcHHHHHHHHHHHHHHHHhcc-----CCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHHHHH
Confidence            9999  5667789999999999887765432211     2458899999999999987  77899999999988766655


Q ss_pred             H
Q psy11213        585 K  585 (621)
Q Consensus       585 ~  585 (621)
                      -
T Consensus       246 i  246 (387)
T d1qvra2         246 M  246 (387)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.60  E-value=5.8e-08  Score=94.68  Aligned_cols=201  Identities=12%  Similarity=0.043  Sum_probs=111.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCccc-cceEEEee-----cCcccceee-eccce-----eecC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSGV-GLTAAVMK-----DPITNEMVL-EGGAL-----VLAD  433 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~~-gLta~~~~-----~~~~g~~~l-~~Gal-----vlAd  433 (621)
                      |+||+||||||||++++.+++.+...     ++......... .+......     .+..+.... ..+.+     ....
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL  124 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhccc
Confidence            99999999999999999999886431     11111110000 00000000     000000000 00000     0112


Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL  513 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli  513 (621)
                      ..+..+|++|.........+...++...         ..-..++.+++++|+..        ..  ..+.+++.+|+-..
T Consensus       125 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~--------~~--~~~~~~~~~r~~~~  185 (276)
T d1fnna2         125 YMFLVLDDAFNLAPDILSTFIRLGQEAD---------KLGAFRIALVIVGHNDA--------VL--NNLDPSTRGIMGKY  185 (276)
T ss_dssp             CEEEEEETGGGSCHHHHHHHHHHTTCHH---------HHSSCCEEEEEEESSTH--------HH--HTSCHHHHHHHTTC
T ss_pred             ccccchhHHHHhhhhhhhhHHHHHhccc---------cccccceEEeecCCchh--------hh--hhcchhhhhhhcch
Confidence            4567899999988877666655554321         01134467788888652        11  24678888887544


Q ss_pred             EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11213        514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDM  593 (621)
Q Consensus       514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~  593 (621)
                      .+....++.++-.+|.++.+...                          .....+++++.+.|.+...     .......
T Consensus       186 ~i~~~~~~~~e~~~il~~r~~~~--------------------------~~~~~~~~~~l~~ia~~~~-----~~~~~~~  234 (276)
T d1fnna2         186 VIRFSPYTKDQIFDILLDRAKAG--------------------------LAEGSYSEDILQMIADITG-----AQTPLDT  234 (276)
T ss_dssp             EEECCCCBHHHHHHHHHHHHHHH--------------------------BCTTSSCHHHHHHHHHHHS-----BSSTTCT
T ss_pred             hccccchhHHHHHHHHHHHHHHh--------------------------cccccccHHHHHHHHHHhh-----hhhhhhh
Confidence            45666777776666665543321                          0134567777777765421     0000112


Q ss_pred             CccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        594 SYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       594 ~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      ...++|....+++.|...|..+.+..|+
T Consensus       235 ~~G~~R~a~~ll~~a~~~A~~~~~~~I~  262 (276)
T d1fnna2         235 NRGDARLAIDILYRSAYAAQQNGRKHIA  262 (276)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            2346899999999999999999988875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.3e-07  Score=91.83  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc-ccceEEEeecCc-ccc----eee-eccceeecCCCeeEecCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG-VGLTAAVMKDPI-TNE----MVL-EGGALVLADQGICCIDEFD  443 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~-~gLta~~~~~~~-~g~----~~l-~~GalvlAd~gi~~IDEid  443 (621)
                      |+||+||||||||++++++|+.....++........ .....+...+.. +..    +.. ...........++++||++
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~  133 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD  133 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeecc
Confidence            899999999999999999999876655432221110 000000000000 000    000 0001111233589999999


Q ss_pred             CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213        444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD  523 (621)
Q Consensus       444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~  523 (621)
                      .+....+..+...++.-.            .....++.++|...            ....+++.+|+  ..+....|+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~------------~~~~~ii~i~~~~~------------~~~~~~l~~~~--~~i~f~~~~~~  187 (253)
T d1sxja2         134 GMSGGDRGGVGQLAQFCR------------KTSTPLILICNERN------------LPKMRPFDRVC--LDIQFRRPDAN  187 (253)
T ss_dssp             GCCTTSTTHHHHHHHHHH------------HCSSCEEEEESCTT------------SSTTGGGTTTS--EEEECCCCCHH
T ss_pred             ccccchhhhhHHHhhhhc------------cccccccccccccc------------cccccccccee--eeeeccccchh
Confidence            999988887777665311            01122333344321            12345677777  66777888888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213        524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC  561 (621)
Q Consensus       524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a  561 (621)
                      .-..+++.++....         -.++.+.+..++..+
T Consensus       188 ~i~~~l~~i~~~e~---------i~i~~~~l~~i~~~s  216 (253)
T d1sxja2         188 SIKSRLMTIAIREK---------FKLDPNVIDRLIQTT  216 (253)
T ss_dssp             HHHHHHHHHHHHHT---------CCCCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC---------CCCCHHHHHHHHHhC
Confidence            88888888875421         124555565555543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.4e-08  Score=95.11  Aligned_cols=127  Identities=21%  Similarity=0.301  Sum_probs=75.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeec-cce--eecCC--
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEG-GAL--VLADQ--  434 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~-Gal--vlAd~--  434 (621)
                      -|++|+|+||+|||.+++.+|+....          .+|....+.    |.+..   ...|+|.-.- ..+  ..+..  
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~----LiAg~---~~rG~~E~rl~~il~e~~~~~~~  116 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----LVAGA---KYRGEFEERLKGVLNDLAKQEGN  116 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH----HHTTT---CSHHHHHHHHHHHHHHHHHSTTT
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH----HhccC---CccHHHHHHHHHHHHHHhcCCCc
Confidence            39999999999999999999886321          122111110    11100   0123342111 111  11223  


Q ss_pred             CeeEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213        435 GICCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL  506 (621)
Q Consensus       435 gi~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL  506 (621)
                      -|+||||++.+-..        .-+.|..+|+.+               ...+|||+.|.+        +...++-.++|
T Consensus       117 iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg---------------~l~~IgatT~ee--------y~~~~e~d~aL  173 (195)
T d1jbka_         117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------------ELHCVGATTLDE--------YRQYIEKDAAL  173 (195)
T ss_dssp             EEEEEETGGGGTT------CCCCHHHHHHHHHTT---------------SCCEEEEECHHH--------HHHHTTTCHHH
T ss_pred             EEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCC---------------CceEEecCCHHH--------HHHHHHcCHHH
Confidence            38999999876322        224455555543               367899998873        55567789999


Q ss_pred             hccccEEEEecCCCChHHHHHH
Q psy11213        507 LSRFDLLWLIQDKPDRDNDLKL  528 (621)
Q Consensus       507 lsRFDli~~~~d~~d~~~d~~i  528 (621)
                      .+||  -.+.++.|+.++-..|
T Consensus       174 ~rrF--~~I~V~Ep~~e~t~~I  193 (195)
T d1jbka_         174 ERRF--QKVFVAEPSVEDTIAI  193 (195)
T ss_dssp             HTTE--EEEECCCCCHHHHHTT
T ss_pred             HhcC--CEeecCCCCHHHHHHH
Confidence            9999  5666778887765543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=1.4e-06  Score=91.90  Aligned_cols=138  Identities=20%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             CCCeeEecCCCCCC------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc
Q psy11213        433 DQGICCIDEFDKLP------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI  500 (621)
Q Consensus       433 d~gi~~IDEidk~~------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~  500 (621)
                      .+|+.++||+++..            +..+..++..++..++.. +.|...+-+  ...+|+.-+.         ....+
T Consensus       249 ~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~-~~~~~~~~~--~l~i~~~~~~---------~~~~~  316 (443)
T d1g41a_         249 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMVKTDH--ILFIASGAFQ---------VARPS  316 (443)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEEECTT--CEEEEEECCS---------SCCGG
T ss_pred             ccCccccchhhhhhhcccCCCCCcccchhhhhhhhhcccccccc-ccccccccc--hhhccccchh---------hcccc
Confidence            46899999999853            234557777888777765 345443333  2344443222         23345


Q ss_pred             CCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Q psy11213        501 QLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVK  578 (621)
Q Consensus       501 ~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~  578 (621)
                      +|-|.|..||. +.+..+..+++.-.+|...                 -....+++|...-...  .-.++++|.+.|++
T Consensus       317 gliPEliGRlP-i~v~L~~L~~~dL~rILtE-----------------PknsLikQy~~lf~~~gv~L~ft~~al~~iA~  378 (443)
T d1g41a_         317 DLIPELQGRLP-IRVELTALSAADFERILTE-----------------PHASLTEQYKALMATEGVNIAFTTDAVKKIAE  378 (443)
T ss_dssp             GSCHHHHTTCC-EEEECCCCCHHHHHHHHHS-----------------STTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred             cchhhhccceE-EEEEccCccHHHHHHHHHh-----------------hhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHH
Confidence            78899999997 5555566666665554431                 1123578888766655  44568999999998


Q ss_pred             HHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213        579 AYTELRKVARNSRDMSYTSARNLLAILR  606 (621)
Q Consensus       579 ~y~~lR~~~~~~~~~~~~t~R~leslir  606 (621)
                      ...++.....+      +..|.|.+++.
T Consensus       379 ~A~~~n~~~~~------~GAR~Lr~i~E  400 (443)
T d1g41a_         379 AAFRVNEKTEN------IGARRLHTVME  400 (443)
T ss_dssp             HHHHHHHHSCC------CGGGHHHHHHH
T ss_pred             HHHHhhhhccc------CCchHHHHHHH
Confidence            87766544222      35677766643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.28  E-value=5.2e-07  Score=84.95  Aligned_cols=117  Identities=12%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcc-------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecC
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLAR-------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDE  441 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~p-------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDE  441 (621)
                      ..++||.|+||+|||++++.+++...       ...+....+.+ .|.-  .+++ ........+   ..+..-|++|||
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~-I~Id--~IR~-i~~~~~~~~---~~~~~KviIId~   87 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN-IGID--DIRT-IKDFLNYSP---ELYTRKYVIVHD   87 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSC-BCHH--HHHH-HHHHHTSCC---SSSSSEEEEETT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCC-CCHH--HHHH-HHHHHhhCc---ccCCCEEEEEeC
Confidence            35999999999999999999988632       11111111100 0000  0000 000001111   112334999999


Q ss_pred             CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213        442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP  520 (621)
Q Consensus       442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~  520 (621)
                      +|+|+.+.+++|+..||+-             |..+. ++.|.|+.              .|.+++.||+  ..+-...|
T Consensus        88 ad~l~~~aqNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~ll~TI~SRC--~~i~~~~p  138 (198)
T d2gnoa2          88 CERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH--------------YLLPTIKSRV--FRVVVNVP  138 (198)
T ss_dssp             GGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG--------------GSCHHHHTTS--EEEECCCC
T ss_pred             ccccchhhhhHHHHHHhCC-------------CCCceeeeccCChh--------------hCHHHHhcce--EEEeCCCc
Confidence            9999999999999999962             23333 34444543              5899999999  33333444


Q ss_pred             C
Q psy11213        521 D  521 (621)
Q Consensus       521 d  521 (621)
                      .
T Consensus       139 ~  139 (198)
T d2gnoa2         139 K  139 (198)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.26  E-value=1.9e-06  Score=81.90  Aligned_cols=166  Identities=16%  Similarity=0.256  Sum_probs=89.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP  446 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~  446 (621)
                      .++|+|+||+|||.|++++++.+.+    .+|.+....... +..+. .+....++.     -......++|||+++.+.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-----~~~~~~dll~iDDi~~i~  110 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHL-KKGTINEFR-----NMYKSVDLLLLDDVQFLS  110 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHH-HHTCHHHHH-----HHHHTCSEEEEECGGGGT
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH-HHHHH-HccchhhHH-----HHHhhccchhhhhhhhhc
Confidence            4999999999999999999887532    122211000000 00000 000000000     001245899999999874


Q ss_pred             --hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCCCCh
Q psy11213        447 --DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDKPDR  522 (621)
Q Consensus       447 --~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~~d~  522 (621)
                        +..+..|+..++..            ...+..+|.|+|-...         +--.+.+.|.|||-  +++-+ + |+.
T Consensus       111 ~~~~~~~~lf~lin~~------------~~~~~~iiits~~~p~---------~l~~~~~dL~SRL~~g~~~~i-~-p~d  167 (213)
T d1l8qa2         111 GKERTQIEFFHIFNTL------------YLLEKQIILASDRHPQ---------KLDGVSDRLVSRFEGGILVEI-E-LDN  167 (213)
T ss_dssp             TCHHHHHHHHHHHHHH------------HHTTCEEEEEESSCGG---------GCTTSCHHHHHHHHTSEEEEC-C-CCH
T ss_pred             CchHHHHHHHHHHHHH------------hhccceEEEecCCcch---------hccccchHHHHHhhCceEEEE-C-CCc
Confidence              44556666666532            1122345555553311         11136788999985  33333 3 443


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213        523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL  602 (621)
Q Consensus       523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le  602 (621)
                      +...++++                            .+|+..+..+++++.++|.+.      .         -++|.|+
T Consensus       168 ~~~~~iL~----------------------------~~a~~rgl~l~~~v~~yl~~~------~---------~~~R~L~  204 (213)
T d1l8qa2         168 KTRFKIIK----------------------------EKLKEFNLELRKEVIDYLLEN------T---------KNVREIE  204 (213)
T ss_dssp             HHHHHHHH----------------------------HHHHHTTCCCCHHHHHHHHHH------C---------SSHHHHH
T ss_pred             HHHHHHHH----------------------------HHHHHcCCCCCHHHHHHHHHh------c---------CcHHHHH
Confidence            33333333                            233445688999999998752      0         1589999


Q ss_pred             HHHHHHH
Q psy11213        603 AILRLST  609 (621)
Q Consensus       603 slirla~  609 (621)
                      +++..-+
T Consensus       205 ~~l~~l~  211 (213)
T d1l8qa2         205 GKIKLIK  211 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9887544

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.95  E-value=8.7e-07  Score=86.54  Aligned_cols=85  Identities=14%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy11213        502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT  581 (621)
Q Consensus       502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~  581 (621)
                      ..+++.+||+. .+....++.++-..|.+..+..                         +. ....+++++.++|++...
T Consensus       192 ~~~~~~~r~~~-~i~f~~y~~~el~~Il~~r~~~-------------------------~~-~~~~~~~~al~~ia~~~~  244 (287)
T d1w5sa2         192 KIPQVESQIGF-KLHLPAYKSRELYTILEQRAEL-------------------------GL-RDTVWEPRHLELISDVYG  244 (287)
T ss_dssp             HCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHH-------------------------HB-CTTSCCHHHHHHHHHHHC
T ss_pred             hccchhcccce-eeeccCCcHHHHHHHHhhhHHH-------------------------hh-ccCCCCHHHHHHHHHHHh
Confidence            45788899964 4555666666666665544321                         10 123467777777766421


Q ss_pred             HHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213        582 ELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ  621 (621)
Q Consensus       582 ~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~  621 (621)
                      .-    .    .....+|....+++.|...|..+.++.|+
T Consensus       245 ~~----~----~~~gd~R~ai~~l~~a~~~A~~~~~~~It  276 (287)
T d1w5sa2         245 ED----K----GGDGSARRAIVALKMACEMAEAMGRDSLS  276 (287)
T ss_dssp             GG----G----TSCCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             cc----c----cCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            10    0    11135888888888888888888887775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.95  E-value=1.1e-06  Score=90.27  Aligned_cols=29  Identities=14%  Similarity=0.100  Sum_probs=26.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      .+||+||||||||++++++++.+...++.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~~~~~~i~  184 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLELCGGKALN  184 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            79999999999999999999998776654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.74  E-value=6.3e-05  Score=67.88  Aligned_cols=25  Identities=32%  Similarity=0.569  Sum_probs=23.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +|+|+||||+|||+|++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            7999999999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.46  E-value=8.6e-05  Score=68.75  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      -++|+|||+||||.++.++.+.+...+... .              .....+.+.+    +++..++++||...+.....
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~l~G~vis~-~--------------N~~s~F~Lq~----l~~~kv~l~dD~t~~~~~~~  115 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHFIQGAVISF-V--------------NSTSHFWLEP----LTDTKVAMLDDATTTCWTYF  115 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHTCEECCC-C--------------CSSSCGGGGG----GTTCSSEEEEEECHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHHhCCEEEec-c--------------CCCCCccccc----ccCCeEEEEeccccchHHHH
Confidence            789999999999999999999864222110 0              0011233332    45778999999877655444


Q ss_pred             hh-hHhhhcceEEEEecCCe-EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213        451 TA-IHEVMEQQTISIAKAGI-MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF  510 (621)
Q Consensus       451 ~~-L~eame~q~isi~k~gi-~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF  510 (621)
                      .. +-.+++...+++...+. ...+.. .-+|.|+|-.-+.          -+-..+|.||.
T Consensus       116 d~~lK~ll~G~~vsvd~KhK~~vqi~~-pPliITsN~~~~~----------~d~~~~L~sRi  166 (205)
T d1tuea_         116 DTYMRNALDGNPISIDRKHKPLIQLKC-PPILLTTNIHPAK----------DNRWPYLESRI  166 (205)
T ss_dssp             HHHCHHHHHTCCEEEC----CCEEECC-CCEEEEESSCTTS----------SSSCHHHHTSC
T ss_pred             HHHHHhccCCCeeeeecccCCcccccC-CCEEEEcCCCCCc----------cccchhhhheE
Confidence            44 55677777888854332 122222 2467788864221          13456899998

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.27  E-value=0.001  Score=64.68  Aligned_cols=145  Identities=9%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR  450 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~  450 (621)
                      =++|+|+|+||||.++..+++.++.........                ..+.+.    .+.+.-++++||.+.-. ...
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~lg~~~~~~~~~----------------~~f~l~----~l~~k~~~~~~e~~~~~-~~~  164 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN----------------ENFPFN----DCVDKMVIWWEEGKMTA-KVV  164 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEECCTTC----------------SSCTTG----GGSSCSEEEECSCCEET-TTH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcchhhccccC----------------CCcccc----ccCCCEEEEEeCCCccc-cHH
Confidence            578899999999999999999975432111111                111111    13456788999987543 344


Q ss_pred             hhhHhhhcceEEEEecC-CeEEecCCcceEEeecCCCCCC--CCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHH
Q psy11213        451 TAIHEVMEQQTISIAKA-GIMTRLNARVSILAAANPAYGR--YNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK  527 (621)
Q Consensus       451 ~~L~eame~q~isi~k~-gi~~~l~ar~~viAa~Np~~g~--~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~  527 (621)
                      ..+-.++....|++... .....+...+.+|-|+|.....  ++.     ...+=..+|.||+  +++-.+.+-      
T Consensus       165 ~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~-----~~~~~~~~l~~R~--~~~~F~~~~------  231 (267)
T d1u0ja_         165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNS-----TTFEHQQPLQDRM--FKFELTRRL------  231 (267)
T ss_dssp             HHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTE-----EECTTHHHHHTTE--EEEECCSCC------
T ss_pred             HHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCc-----cccccchHhhhhE--EEEECCCcC------
Confidence            56777777777887433 3345566667888888865311  100     0012246899998  333333221      


Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC
Q psy11213        528 LAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK  564 (621)
Q Consensus       528 ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~  564 (621)
                                     +.....+..++++.++.+|+..
T Consensus       232 ---------------p~~~~~i~~~e~k~f~~W~~~~  253 (267)
T d1u0ja_         232 ---------------DHDFGKVTKQEVKDFFRWAKDH  253 (267)
T ss_dssp             ---------------CTTSCCCCHHHHHHHHHHHHHT
T ss_pred             ---------------CCccCCCCHHHHHHHHHHHHhc
Confidence                           1123457889999999999875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.89  E-value=0.00021  Score=68.70  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|||+||||||||+|++++|..+....
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~~~   60 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQGNV   60 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            699999999999999999999875443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00023  Score=62.44  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+|+.+...++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~i   31 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFY   31 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            7999999999999999999999766554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.83  E-value=0.00027  Score=62.66  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=25.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYTT  400 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~  400 (621)
                      -|+|.|+||+|||++++.+++.++...+.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~~~~~   33 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIE   33 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            388999999999999999999987665543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00029  Score=63.00  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      ||+|.|+||||||+|++.+++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999998875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.70  E-value=0.00034  Score=62.13  Aligned_cols=28  Identities=32%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+++.+.-..+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i   33 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYI   33 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            7999999999999999999988654443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.67  E-value=0.00044  Score=61.63  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=24.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ++||+|.|+||+|||++++.+++.++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            469999999999999999999998653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.00052  Score=61.34  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +|++.|+||||||+|++.+++.++.
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            7999999999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.31  E-value=0.00085  Score=59.77  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=25.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      ||.|+|+||+|||++++.+|+.+....+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d   30 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLD   30 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            79999999999999999999997665554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.24  E-value=0.0012  Score=58.48  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      =|+|.|+||+|||++++.+++.++...+
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~~~~~   32 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLPEPWL   32 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence            4788999999999999999999876544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.001  Score=59.86  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      +|+|+|+||+|||++++.+++.+.-...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i   29 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHI   29 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcee
Confidence            7899999999999999999998654433

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.11  E-value=0.0012  Score=58.62  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=23.0

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .-|+|+|.||+|||++++.+++.+..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47899999999999999999988643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.09  E-value=0.0018  Score=56.17  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+|+|+||+|||++++.+.+..+
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78899999999999998876544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0016  Score=57.62  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      ++|+|+||+|||++++.+++.++-..
T Consensus         9 ivl~G~~GsGKsT~a~~La~~l~~~~   34 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQLHAAF   34 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            66799999999999999999865433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.06  E-value=0.0014  Score=59.67  Aligned_cols=27  Identities=19%  Similarity=0.318  Sum_probs=23.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ++.|+|+|+||+|||++++.+|+.+.-
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g~   29 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFCV   29 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            358899999999999999999988643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0015  Score=59.01  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=23.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .+|+|.|+||+|||++++.+++.+.-..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~   28 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQ   28 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            3799999999999999999999864433

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.00  E-value=0.0015  Score=58.53  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=25.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+|+.+....+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id   32 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVD   32 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            78899999999999999999987665543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0018  Score=57.68  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|.|+|+||+|||++++.+|+.+...++.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD   31 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLD   31 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            68899999999999999999998666553

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.91  E-value=0.0017  Score=58.69  Aligned_cols=29  Identities=31%  Similarity=0.374  Sum_probs=24.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+++.+.-..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is   30 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence            68999999999999999999986544443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.89  E-value=0.0021  Score=56.96  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      -|+|.|+||+|||++++.+++.++...+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~lg~~~~   33 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLPGVPKV   33 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4889999999999999999998765443

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.62  E-value=0.0022  Score=58.49  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      -|+++|+||+|||++++.+++.+.-.
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g~~   33 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            47999999999999999999986433

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0028  Score=57.81  Aligned_cols=29  Identities=17%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|+|+||||+|||++++.+++.+.-..+.
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g~~~is   38 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            37889999999999999999987544433

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.58  E-value=0.0031  Score=57.62  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQY  398 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~  398 (621)
                      .+|+|+|+||+|||++++.+++.+.-...
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g~~~i   35 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFELKHL   35 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBCCEEE
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence            48999999999999999999998654433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0017  Score=58.66  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|+|+|.||+|||++++.+++.+.
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.52  E-value=0.0021  Score=58.47  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      .+|+|.|+||+|||++++.+++.+.-.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~   30 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLA   30 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            379999999999999999999886443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0026  Score=57.14  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      +|+|+|+||+|||++++.+++.+.-..+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            68999999999999999999986544333

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0034  Score=56.56  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      ..|+|+|+||+|||++++.+++.+.-.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~   29 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAA   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            578999999999999999999986433

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0035  Score=56.94  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      -|+|.||||+|||++++.+++.+.-..
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~~   29 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYTH   29 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            579999999999999999999864433

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.0034  Score=57.23  Aligned_cols=29  Identities=21%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      -|+|+|+||+|||++++.+++...-....
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~g~~~is   38 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKYGYTHLS   38 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeEe
Confidence            48899999999999999999986544433

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.14  E-value=0.0046  Score=56.45  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      |+|+|.||+|||++++.+++.+
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0062  Score=54.66  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      =|+|+|.||+|||++++.++..
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999987654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.90  E-value=0.0062  Score=52.73  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+|+|+||+|||+|++++..-
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0069  Score=55.76  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=24.6

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      |.+.||||+||+++++.+++.+.-....+|.
T Consensus         6 I~I~GppGSGKgT~ak~La~~~gl~~iStGd   36 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   36 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            4566999999999999999997655555443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.66  E-value=0.0078  Score=52.38  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+|+|+||+|||+|++++..-
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999988664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.0072  Score=52.94  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=21.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.++|+||+|||+|++.+++.+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999987643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.44  E-value=0.0086  Score=53.04  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -|++.|+||+|||++++.+++.+
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.42  E-value=0.0092  Score=55.08  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR  402 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~  402 (621)
                      +.|.+-||||+|||++++.+++.+.-..+.+|.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            456777999999999999999998766655554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.35  E-value=0.0087  Score=52.58  Aligned_cols=24  Identities=13%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+++|+||+|||+|++++...
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999987543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.016  Score=52.42  Aligned_cols=27  Identities=30%  Similarity=0.261  Sum_probs=23.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      +|.|+||+|+|||+|++.+++..|...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~   29 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcce
Confidence            689999999999999999998877543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.015  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ++.|+|+|++|+|||+|++.+..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            57899999999999999988765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.86  E-value=0.036  Score=46.90  Aligned_cols=25  Identities=20%  Similarity=0.150  Sum_probs=18.1

Q ss_pred             CCCeeEecCCCCCChhhhhhhHhhh
Q psy11213        433 DQGICCIDEFDKLPDADRTAIHEVM  457 (621)
Q Consensus       433 d~gi~~IDEidk~~~~~~~~L~eam  457 (621)
                      +-++++|||++.++.+....+..++
T Consensus        94 ~~~~vIiDE~H~~~~~~~~~~~~~l  118 (136)
T d1a1va1          94 AYDIIICDECHSTDATSILGIGTVL  118 (136)
T ss_dssp             CCSEEEEETTTCCSHHHHHHHHHHH
T ss_pred             cCCEEEEecccccCHHHHHHHHHHH
Confidence            4589999999999876555454443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.014  Score=51.20  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|+||+|||+|+..+..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999987664

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.014  Score=50.16  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+|+|+||+|||+|+.++..-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.011  Score=59.52  Aligned_cols=25  Identities=8%  Similarity=0.117  Sum_probs=20.1

Q ss_pred             CCeeEecCCCCCChhhhhhhHhhhc
Q psy11213        434 QGICCIDEFDKLPDADRTAIHEVME  458 (621)
Q Consensus       434 ~gi~~IDEidk~~~~~~~~L~eame  458 (621)
                      ..+++|||...++......++.++.
T Consensus       262 ~d~lIIDEaSmv~~~l~~~ll~~~~  286 (359)
T d1w36d1         262 LDVLVVDEASMIDLPMMSRLIDALP  286 (359)
T ss_dssp             CSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred             cceeeehhhhccCHHHHHHHHHHhc
Confidence            4699999999998777777777664

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.56  E-value=0.016  Score=54.70  Aligned_cols=25  Identities=12%  Similarity=-0.015  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      +++++|++|+|||+|++.+++..+.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            8899999999999999998876554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.42  E-value=0.023  Score=50.87  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -|.|+||+|+|||+|++.+.+..|.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999988775

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.31  E-value=0.015  Score=51.72  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +++.|.||+|||++++.+++.++
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            57889999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.02  Score=51.86  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRS  396 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~  396 (621)
                      +|.|+||+|+|||+|++.+++..|..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            58899999999999999998886644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.14  E-value=0.018  Score=50.79  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ...|+++|+||+|||+|+.++...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999988653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.023  Score=50.31  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+++|+||+|||+|+..+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            6899999999999999987643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.047  Score=51.17  Aligned_cols=41  Identities=29%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+-|+||.|+|||+|++.++.+.+
T Consensus        11 g~~~~l~~isl~i~~Ge---------i~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          11 GEVVVSKDINLDIHEGE---------FVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEeeeEEEEcCCC---------EEEEECCCCChHHHHHHHHhcCCC
Confidence            56666677755555555         688999999999999999998854

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.024  Score=49.83  Aligned_cols=22  Identities=36%  Similarity=0.795  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|++|+|||+|++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.02  Score=49.65  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++.|+++|+||+|||+|++++...
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999988754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.024  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +..|+++|++|+|||+|+..+..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            35789999999999999987754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.025  Score=49.65  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+|+|++|+|||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.026  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+|+|++|+|||+|+.++..-
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.84  E-value=0.025  Score=49.57  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.|+|+|++|+|||+|+..+..-
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            368999999999999999988653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.73  E-value=0.027  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+++|+||+|||+|++.+..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5799999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.028  Score=49.91  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+++|++|+|||+|++.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.029  Score=49.23  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+|+|+||+|||+|++.+..-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999887653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.59  E-value=0.055  Score=50.99  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      |+...+.+|-..+..+.         -+-|+||.|+|||+|++.++.+.
T Consensus        14 g~~~al~~vsl~i~~Ge---------~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          14 GEVTAVREMSLEVKDGE---------FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTEEEEEEEEEEEETTC---------EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEcceeeEEcCCC---------EEEEECCCCChHHHHHHHHhcCC
Confidence            66666777755444454         78899999999999999998874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.56  E-value=0.02  Score=50.48  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+|+|+||+|||+|+.++..-
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.029  Score=49.30  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|++|+|||+|+..+..-
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.025  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .-|+|+|+||+|||+|++.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.049  Score=51.42  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      ++...+.+|-..+..+.         .+.++|+.|+|||+|++.++.+.+.
T Consensus        14 ~~~~vL~~isl~i~~Ge---------~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          14 DSPVILDNINLSIKQGE---------VIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             TSCEEEEEEEEEEETTC---------EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCcceEeeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            44455666655454555         8999999999999999999988643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.027  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|++|+|||+|++.+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999987754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.36  E-value=0.033  Score=48.59  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+|+|++|+|||+|++.+..-
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999987653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.28  E-value=0.032  Score=50.77  Aligned_cols=22  Identities=14%  Similarity=0.088  Sum_probs=20.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|+|+|+||+|||+|+.++..-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.28  E-value=0.034  Score=49.66  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+++|+||+|||+|+..+..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.034  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+++|++|+|||+|++++..-
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.031  Score=49.95  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+++|+||+|||+|++.+..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.13  E-value=0.047  Score=51.49  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             ccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        337 ENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       337 ~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      ++......|+...+.+|=..+..+.         -+-|+|+.|+|||+|++.++.+.+
T Consensus         8 nlsk~y~~g~~~aL~~vsl~i~~Ge---------~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2           8 NVSKVFKKGKVVALDNVNINIENGE---------RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECTTC---------EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             eEEEEECCCCEEEEeceEEEECCCC---------EEEEECCCCCcHHHHHHHHHcCcC
Confidence            3433444466666677755454455         788999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.12  E-value=0.028  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .+.|+++|+||+|||+|++++..
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999988744

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.035  Score=49.50  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      |.|+++|++|+|||+|++.+..
T Consensus         6 iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.12  E-value=0.019  Score=50.76  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .++|+++|+||+|||+|++++..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.08  E-value=0.036  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+++|++|+|||+|++.+..-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5899999999999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.06  E-value=0.089  Score=45.25  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|.|+|.||+|||+|++++...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.05  E-value=0.03  Score=49.98  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+=|-+.|++|+|||+|++.+++.+.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567899999999999999988754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.037  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+++|++|+|||+|++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999987653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.01  E-value=0.077  Score=49.88  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-.....+.         -+-|+||.|+|||+|++.++.+.+
T Consensus        17 g~~~al~~vsl~v~~Ge---------~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          17 GNFTAVNKLNLTIKDGE---------FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEcceeEEECCCC---------EEEEECCCCChHHHHHHHHHcCCC
Confidence            55566667655554555         688999999999999999988743

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.047  Score=48.27  Aligned_cols=23  Identities=48%  Similarity=0.735  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+++|+||+|||+|++.+..-
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            37899999999999999987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.032  Score=48.87  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..|+++|++|+|||+|+.++..-
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999887653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.034  Score=48.69  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+++|+||+|||+|++.+..-
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47899999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.035  Score=48.88  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+|+|++|+|||+|++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.65  E-value=0.043  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -|+|+|++|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.037  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+++|++|+|||+|++.+..-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999987653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.47  E-value=0.035  Score=54.83  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |+|++|++|+|||++++++....|.
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CEEEEeeccccchHHHHHHhhhccc
Confidence            8999999999999999999998775

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.45  E-value=0.043  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .-|+|.|.||+|||+|++.+++.+
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            469999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.045  Score=48.06  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+++|++|+|||+|++.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4899999999999999987654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.046  Score=48.97  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+++.|+||+|||+|+-.++..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.041  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+|+|++|+|||+|++.+..-
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            47999999999999999887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.048  Score=48.15  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+|+|++|+|||+|++.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999987643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.30  E-value=0.048  Score=49.26  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+|+|+||+|||+|+.++...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.043  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..|+|+|++|+|||+|++.+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.18  E-value=0.087  Score=49.19  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             EeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhc
Q psy11213        350 VSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       350 v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      +.+|=..+..+.         -+-|+|+.|+|||+|++.++.+.
T Consensus        21 l~~isl~i~~Ge---------~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          21 LKNVNLNIKEGE---------FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEEEECTTC---------EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeceEEEEcCCC---------EEEEECCCCCCcchhhHhccCCC
Confidence            455544444454         78899999999999999988773

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.096  Score=49.19  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |++-.+.||-..+..+.         -+-|+||.|+|||+|++.++.+.+
T Consensus        13 g~~~vl~~vs~~v~~Ge---------i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          13 GKKEILKGISFEIEEGE---------IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEccceeEEcCCC---------EEEEECCCCCCHHHHHHHHhcCCC
Confidence            67777777755544444         567999999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.054  Score=47.72  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+++|+||+|||+|+..+..-
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999877653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.045  Score=48.20  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+|+|+||+|||+|++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.047  Score=48.27  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+++|++|+|||+|+..+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999887653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.91  E-value=0.047  Score=48.94  Aligned_cols=20  Identities=30%  Similarity=0.482  Sum_probs=18.8

Q ss_pred             ccEEEeCCCCcchhHHHHHH
Q psy11213        370 INICLMGDPGVAKSQLLSYI  389 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~i  389 (621)
                      +.|+|+|++|+|||+|++.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999998

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.85  E-value=0.059  Score=47.36  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+|+|++|+|||+|++.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998765

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.84  E-value=0.1  Score=49.53  Aligned_cols=41  Identities=29%  Similarity=0.467  Sum_probs=32.0

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+-|+|+.|+|||+|++.++.+.+
T Consensus        13 g~~~al~~vs~~i~~GE---------i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAGD---------VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEcceeeEEcCCC---------EEEEECCCCCcHHHHHHHHHcCcc
Confidence            55666777755555555         788999999999999999988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.059  Score=47.27  Aligned_cols=21  Identities=38%  Similarity=0.638  Sum_probs=18.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -|+++|+||+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.72  E-value=0.059  Score=47.26  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |.++|+||+|||+|++++...
T Consensus         3 V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.08  Score=47.28  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      .|.|+||.|+||++|++.+.+..|...
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~   31 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHPDRF   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence            588999999999999999998776543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.67  E-value=0.05  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+++.|+||+|||+|+..++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            68899999999999998887663

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.67  E-value=0.043  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|.|+||+|||+|+-.++..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.055  Score=48.55  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|++|+|||+|+..+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999887654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.41  E-value=0.11  Score=47.48  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            677899999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.40  E-value=0.039  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .+.|+++|+||+|||+|++.+..
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999988743

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=0.042  Score=48.49  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=9.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+++|+||+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=90.33  E-value=0.05  Score=48.86  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|.||+|||+|++++...
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            7999999999999999999753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.27  E-value=0.12  Score=48.58  Aligned_cols=41  Identities=34%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |+...+.+|-..+..+.         -+-|+||.|+|||+|++.++.+.+
T Consensus        17 g~~~al~~vs~~i~~Ge---------i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          17 GAIHAIKGIDLKVPRGQ---------IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTEEEEEEEEEEEETTC---------EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEeeeeEEECCCC---------EEEEECCCCCcHHHHHHHHhCCCC
Confidence            66666777755444444         678899999999999999988754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.081  Score=50.13  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.++|+.|+|||+|++.+..+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            789999999999999999998854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.23  E-value=0.05  Score=48.10  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|+|+|.||+|||+|+.++...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.16  E-value=0.16  Score=44.20  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=19.3

Q ss_pred             EEEeCCCCcchhHHHHHHHhhcc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      +-++|.+|+|||+|+..+.+.+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            34899999999999998877643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.077  Score=48.60  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      -++|+||+|+|||+|.+.+.+..|.
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~   28 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPL   28 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCc
Confidence            4789999999999999999988773

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.077  Score=47.11  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+.|+++|++|+|||+|+..+..-
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            368999999999999999977654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.87  E-value=0.13  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..||+.|++|+|||+++-.+.+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            47999999999999999776654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.04  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      ..+|.|+|.|++|||+|++++..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999988754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.042  Score=48.46  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=17.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|+++|++|+|||+|+.++..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.53  E-value=0.071  Score=51.07  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=17.1

Q ss_pred             cEEEeCCCCcchhHH-HHHHHhh
Q psy11213        371 NICLMGDPGVAKSQL-LSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~l-l~~ia~~  392 (621)
                      ++|+.|+||||||+. +..++.+
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHH
Confidence            899999999999974 4444444

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.50  E-value=0.085  Score=46.69  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|.++|.||+|||+|+.++...
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            68999999999999999988653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.39  E-value=0.075  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .-|+|+|++|+|||+|++.+..-
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999877653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.35  E-value=0.071  Score=49.00  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=19.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -++|.|+||+|||+|+-.++..+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.27  E-value=0.068  Score=47.26  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +|.|+|.||+|||+|++++...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.092  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=19.5

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -+++.|+||+|||+|+..++..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999888764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.17  E-value=0.1  Score=49.16  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.++|+.|+|||+|++.++.+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            678899999999999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.092  Score=46.32  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|.||+|||+|++++...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.092  Score=46.03  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|.||+|||+|++++.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.02  E-value=0.08  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      =+++.|+||+|||+|+-.++..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999998877654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.97  E-value=0.18  Score=47.58  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|+|+|.||+|||+|+.++...
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            469999999999999999998653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.97  E-value=0.083  Score=47.47  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -|+++|++|+|||+|++.+..-
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            5899999999999999987653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.17  Score=46.98  Aligned_cols=20  Identities=40%  Similarity=0.463  Sum_probs=17.8

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -..|+|.+|+|||+|+.++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            56889999999999998875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.11  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhccc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      |-+.|++|+|||++++.+++.+..
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568899999999999999988654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.60  E-value=0.14  Score=48.51  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+.++|+.|+|||+|++.++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            788999999999999999887754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.56  E-value=0.11  Score=48.70  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            345789999999999999998854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=88.50  E-value=0.11  Score=47.89  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |++.|++|+|||+|++++.+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHH
Confidence            789999999999999999765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=88.35  E-value=0.18  Score=46.98  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+.|+||.|+|||+|++.++.+.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            57889999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=88.06  E-value=0.22  Score=44.01  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++||-++|.|+.|||+|+.++.+.
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHh
Confidence            469999999999999999999865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.95  E-value=0.13  Score=48.59  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            789999999999999999998854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.60  E-value=0.22  Score=47.09  Aligned_cols=41  Identities=20%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      |....+.+|=..+..+.         -+-|+||.|+|||+|++.++.+.+
T Consensus        15 g~~~aL~~vs~~v~~Ge---------i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          15 GEFKALDGVSISVNKGD---------VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTEEEEEEECCEEETTC---------EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCeEEEcceEEEECCCC---------EEEEECCCCCcHHHHHHHHHCCCc
Confidence            44445566644443343         567899999999999999987743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.22  Score=46.61  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+-|+|+.|+|||+|++.++.+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            67889999999999999998774

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.26  E-value=0.2  Score=48.14  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             cCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213        344 PGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR  395 (621)
Q Consensus       344 ~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr  395 (621)
                      .|+. .+.+|=..+..+.         -+.|+|+.|+|||+|++.++.+.+.
T Consensus        47 ~g~p-vL~~isl~i~~Ge---------~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          47 VGNP-VLKNINLNIEKGE---------MLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             TTCE-EEEEEEEEECTTC---------EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CCCe-EEeCeEEEEcCCC---------EEEEECCCCChHHHHHHHHhCCCcC
Confidence            3443 4555544444444         6889999999999999999988643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.19  E-value=0.12  Score=47.09  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=16.8

Q ss_pred             cEEEeCCCCcchhHHHHHHH
Q psy11213        371 NICLMGDPGVAKSQLLSYIE  390 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia  390 (621)
                      -+++.|+||+|||+|+..++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            67889999999999986543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.18  E-value=0.13  Score=45.69  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +.|+|+|+.|+|||+|++.+..-
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999998655

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.06  E-value=0.55  Score=43.27  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|.||...|||+++|.++-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            789999999999999997665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.03  E-value=0.095  Score=48.90  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=17.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      -.+|+|++|+|||+|+.++..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCccHHHHHHhhcc
Confidence            456889999999999988753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.02  E-value=0.14  Score=45.26  Aligned_cols=22  Identities=18%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             ccEEEeCCCCcchhHHHHHHHh
Q psy11213        370 INICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      +.|+|+|+.|+|||+|++.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            5899999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.73  E-value=0.12  Score=45.77  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|-|+|+||+|||+|+.++...
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999887543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.49  E-value=0.13  Score=49.55  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=17.1

Q ss_pred             cEEEeCCCCcchhHHH-HHHHhh
Q psy11213        371 NICLMGDPGVAKSQLL-SYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll-~~ia~~  392 (621)
                      ++|+.|+||||||+.+ ..++++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHH
Confidence            8999999999999754 444444

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.47  E-value=0.16  Score=45.29  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQ  397 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~  397 (621)
                      =|.+.|..|+|||++++.+++.++...
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l~~~~   37 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYKNDIC   37 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGTTTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            478899999999999999998875433

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.29  E-value=0.17  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=19.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .|.|+|.+|+|||+||+.+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6789999999999999998654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.06  E-value=0.2  Score=45.06  Aligned_cols=17  Identities=24%  Similarity=0.227  Sum_probs=15.1

Q ss_pred             cEEEeCCCCcchhHHHH
Q psy11213        371 NICLMGDPGVAKSQLLS  387 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~  387 (621)
                      ++++++|+|+|||..+-
T Consensus        42 ~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CEEEECSSHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHH
Confidence            89999999999998653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.92  E-value=0.18  Score=46.10  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=16.3

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ++|+|++|+|||+.+--+|..
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999865555544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.91  E-value=0.17  Score=46.49  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=18.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHh
Q psy11213        371 NICLMGDPGVAKSQLLSYIER  391 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~  391 (621)
                      .|||+|+.|+|||+|++.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            799999999999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=85.51  E-value=0.2  Score=46.10  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|+||+|+|||+.+--+|..
T Consensus        13 vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999865444443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=85.47  E-value=0.21  Score=45.74  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=16.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|+||+|+|||+.+--+|..
T Consensus         8 vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999965444443

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=85.23  E-value=0.2  Score=44.26  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      +..||+.|++|.|||+++-.+.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            348999999999999998776655

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=85.15  E-value=0.19  Score=46.09  Aligned_cols=22  Identities=23%  Similarity=0.307  Sum_probs=12.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|+||+|+|||+.+--+|..
T Consensus        14 vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          14 VIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             EEEEECSCCC----HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999864444433

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=85.12  E-value=0.24  Score=43.24  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      -|+|.|+=|+|||+++|.+++.+.
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEecCCCccHHHHHHHHHhhcc
Confidence            589999999999999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=85.07  E-value=0.19  Score=44.74  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhh
Q psy11213        370 INICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      ..||+.|++|.|||+++-.+.+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            47999999999999999777654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=85.03  E-value=0.19  Score=44.63  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=18.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |-+.|++|+|||++++++.+.
T Consensus         6 IgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHC
Confidence            457899999999999999664

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=0.22  Score=45.71  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=16.8

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -++|+||+|+|||+.+--+|..
T Consensus        11 vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2          11 VILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999865555544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.47  E-value=0.46  Score=44.10  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.7

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++|.||.+.|||+++|.++-.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHHHH
Confidence            5889999999999999998665

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=0.2  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.134  Sum_probs=18.6

Q ss_pred             cEEEeCCCCcchhHHHHHHHhh
Q psy11213        371 NICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      -.+|+|+||+|||+|+-.++..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678999999999999887654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=0.93  Score=41.42  Aligned_cols=21  Identities=33%  Similarity=0.276  Sum_probs=18.1

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .++.|-.|+|||+|++.+.+.
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            467788999999999998775

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.24  Score=46.06  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -+-|+|+.|+|||+|++.++.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            56788999999999999998764

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.77  E-value=0.28  Score=39.32  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEecCCCCeeeecccccccCCCCCCCCccccC
Q psy11213        259 YTCDMCGAETYQPISSLSFTPLLMCPSEDCQV  290 (621)
Q Consensus       259 f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~  290 (621)
                      =+|.+||+.+    . ..++.|..||.  |++
T Consensus        68 p~CrkCGfvF----r-~~~kkPSRCP~--CKS   92 (105)
T d2gmga1          68 AQCRKCGFVF----K-AEINIPSRCPK--CKS   92 (105)
T ss_dssp             CBBTTTCCBC----C-CCSSCCSSCSS--SCC
T ss_pred             hhhhhcCCee----c-ccCCCCCCCCC--CCC
Confidence            4799999864    2 35677899995  984

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.24  E-value=0.32  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      |.+.|..|+|||++++.+++.+
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.35  Score=43.76  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |-|+|.+|+|||++++++.+.
T Consensus         6 IgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEECCCcCCHHHHHHHHHHC
Confidence            558999999999999998765

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=82.02  E-value=0.93  Score=30.31  Aligned_cols=30  Identities=20%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCCeeeecccccccCCCCCCCCccccCC
Q psy11213        254 MTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVN  291 (621)
Q Consensus       254 ~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~  291 (621)
                      -....++|..||+....      -.+|..||.  |+..
T Consensus         4 ~~~~~W~C~~CGyi~~g------~~aP~~CPv--C~~p   33 (44)
T d1lkoa2           4 EQATKWRCRNCGYVHEG------TGAPELCPA--CAHP   33 (44)
T ss_dssp             EEEEEEEETTTCCEEEE------EECCSBCTT--TCCB
T ss_pred             CCCeEEEcCCCCcEEEC------CCCCCcCCC--CCCc
Confidence            34568999999987432      245678996  9853

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=81.53  E-value=0.3  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhc
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      -|.+.|.+|+|||++++.+++.+
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37788999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=81.37  E-value=0.31  Score=47.29  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213        370 INICLMGDPGVAKSQLLSYIERLAR  394 (621)
Q Consensus       370 i~vLL~G~PGtGKS~ll~~ia~~~p  394 (621)
                      .=|.+.|++|+|||++++.++..+.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4577899999999999999998863

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.13  E-value=0.61  Score=46.86  Aligned_cols=24  Identities=21%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             cccEEEeCCCCcchhHHHHHHHhh
Q psy11213        369 NINICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       369 ~i~vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      .+||.++|.||+|||+|+.++...
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            369999999999999999998653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.58  E-value=0.48  Score=43.41  Aligned_cols=29  Identities=14%  Similarity=0.263  Sum_probs=24.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARRSQYT  399 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~  399 (621)
                      =|.+.|.-|+|||++++.+++.++...+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~~~~i~   32 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCc
Confidence            36789999999999999999987665443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=80.57  E-value=0.7  Score=46.41  Aligned_cols=74  Identities=18%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCCCcc--ccceEEEeecCccc-ceeeeccceeecCCCeeEecCCCC
Q psy11213        371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRGSSG--VGLTAAVMKDPITN-EMVLEGGALVLADQGICCIDEFDK  444 (621)
Q Consensus       371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~~s~--~gLta~~~~~~~~g-~~~l~~GalvlAd~gi~~IDEidk  444 (621)
                      =||+.||+|+|||+.+..+....++   .+++-..-...  .|..-. ..+...+ .|.----++...|.-|++|.|+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~-~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd  238 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT-QVNPRVDMTFARGLRAILRQDPDVVMVGEIRD  238 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE-ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCee-eecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence            7999999999999999998776543   23322111111  111110 0111111 111111124556889999999964


Q ss_pred             C
Q psy11213        445 L  445 (621)
Q Consensus       445 ~  445 (621)
                      .
T Consensus       239 ~  239 (401)
T d1p9ra_         239 L  239 (401)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=80.49  E-value=0.41  Score=43.16  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.4

Q ss_pred             EEEeCCCCcchhHHHHHHHhh
Q psy11213        372 ICLMGDPGVAKSQLLSYIERL  392 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~  392 (621)
                      |-|.|.+|+|||++++++.+.
T Consensus         5 IgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHC
Confidence            568999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=80.27  E-value=0.15  Score=44.89  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             EEEeCCCCcchhHHHHHHHhhc
Q psy11213        372 ICLMGDPGVAKSQLLSYIERLA  393 (621)
Q Consensus       372 vLL~G~PGtGKS~ll~~ia~~~  393 (621)
                      .+|+|+.|+|||+|+.++.-.+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999998664