Psyllid ID: psy11227

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MLKNNVNNNANNSGSVEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLHSQTENT
ccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccc
cccccccHcccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHccHHHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHHccccccHHHHcccccccccccccccc
mlknnvnnnannsgsvekkkctrraekppySYIALIVMAIqsspckkltLSEIYSFLQqgfpffrgpyqgwknsirhnlsLNECFLklpkalgrpgkghywtvdpdsqlmfeegsfrrrprgkfkvEVQLGTMGIFITYYLHSQTENT
mlknnvnnnannsgsvekkkctrraEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEegsfrrrprgkfkvevqlgtmGIFITYylhsqtent
MLKnnvnnnannSGSVEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLHSQTENT
*****************************YSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLH******
*******************************YIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKA**RPGKGHYWTVDPDSQLMFEEGSFRR******************************
MLKNNVNNNANNSGSVEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLHSQTENT
*********************TRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGK*************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKNNVNNNANNSGSVEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLHSQTENT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query148 2.2.26 [Sep-21-2011]
Q9W707 372 Forkhead box protein F1-B N/A N/A 0.628 0.25 0.849 5e-44
Q9W706 373 Forkhead box protein F1-A N/A N/A 0.628 0.249 0.849 6e-44
Q12946 379 Forkhead box protein F1 O yes N/A 0.702 0.274 0.775 6e-44
Q28BS5 373 Forkhead box protein F1 O yes N/A 0.628 0.249 0.849 7e-44
Q61080 378 Forkhead box protein F1 O yes N/A 0.695 0.272 0.773 8e-44
A1L1S5 380 Forkhead box protein F1 O no N/A 0.628 0.244 0.849 8e-44
O54743 446 Forkhead box protein F2 O no N/A 0.628 0.208 0.849 1e-43
Q12947 444 Forkhead box protein F2 O no N/A 0.628 0.209 0.849 2e-43
Q9VS05 676 Forkhead box protein bini yes N/A 0.939 0.205 0.547 2e-37
Q9DE25 476 Forkhead box C1-A OS=Dani no N/A 0.608 0.189 0.688 1e-32
>sp|Q9W707|FXF1B_XENLA Forkhead box protein F1-B OS=Xenopus laevis GN=foxf1-b PE=2 SV=1 Back     alignment and function desciption
 Score =  176 bits (446), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 84/93 (90%)

Query: 23  RRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLN 82
           RR EKPPYSYIALIVMAIQSSP K+LTLSEIY FLQ  FPFFRG YQGWKNS+RHNLSLN
Sbjct: 50  RRPEKPPYSYIALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLN 109

Query: 83  ECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGS 115
           ECF+KLPK LGRPGKGHYWT+DP S+ MFEEGS
Sbjct: 110 ECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGS 142
Probable transcription factor. Required for smooth muscle (visceral mesoderm) differentiation during gut development. Also required for normal proliferation of the lateral plate mesoderm. Acts as a downstream mediator of bmp4-signaling.
Xenopus laevis (taxid: 8355)
>sp|Q9W706|FXF1A_XENLA Forkhead box protein F1-A OS=Xenopus laevis GN=foxf1-a PE=2 SV=1 Back     alignment and function description
>sp|Q12946|FOXF1_HUMAN Forkhead box protein F1 OS=Homo sapiens GN=FOXF1 PE=2 SV=2 Back     alignment and function description
>sp|Q28BS5|FOXF1_XENTR Forkhead box protein F1 OS=Xenopus tropicalis GN=foxf1 PE=2 SV=1 Back     alignment and function description
>sp|Q61080|FOXF1_MOUSE Forkhead box protein F1 OS=Mus musculus GN=Foxf1 PE=2 SV=2 Back     alignment and function description
>sp|A1L1S5|FOXF1_DANRE Forkhead box protein F1 OS=Danio rerio GN=foxf1 PE=2 SV=1 Back     alignment and function description
>sp|O54743|FOXF2_MOUSE Forkhead box protein F2 OS=Mus musculus GN=Foxf2 PE=2 SV=2 Back     alignment and function description
>sp|Q12947|FOXF2_HUMAN Forkhead box protein F2 OS=Homo sapiens GN=FOXF2 PE=1 SV=2 Back     alignment and function description
>sp|Q9VS05|FOXF_DROME Forkhead box protein biniou OS=Drosophila melanogaster GN=bin PE=1 SV=2 Back     alignment and function description
>sp|Q9DE25|FXC1A_DANRE Forkhead box C1-A OS=Danio rerio GN=foxc1a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
341957814137 FoxF1/2, partial [Lethenteron camtschati 0.817 0.883 0.676 4e-45
57337374 436 forkhead transcription factor [Branchios 0.797 0.270 0.720 1e-44
307190328 494 Forkhead box protein F2 [Camponotus flor 0.695 0.208 0.805 1e-44
322786617 357 hypothetical protein SINV_13476 [Solenop 0.722 0.299 0.785 6e-44
156555811 517 PREDICTED: hypothetical protein LOC10011 0.716 0.205 0.777 6e-44
189235430 442 PREDICTED: similar to forkhead box F1 [T 0.689 0.230 0.813 6e-44
383853176 484 PREDICTED: uncharacterized protein LOC10 0.702 0.214 0.788 8e-44
332016880 504 Forkhead box protein F1-B [Acromyrmex ec 0.722 0.212 0.775 9e-44
260798592 417 hypothetical protein BRAFLDRAFT_65139 [B 0.709 0.251 0.780 1e-43
307192425 468 Forkhead box protein F2 [Harpegnathos sa 0.695 0.220 0.796 1e-43
>gi|341957814|gb|AEL13773.1| FoxF1/2, partial [Lethenteron camtschaticum] Back     alignment and taxonomy information
 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 101/130 (77%), Gaps = 9/130 (6%)

Query: 2   LKNNVNNNANNSGSVEKKKC---------TRRAEKPPYSYIALIVMAIQSSPCKKLTLSE 52
           + ++V+    + GS   + C          RR EKPP+SYIALIVMAIQSSP K++TLSE
Sbjct: 3   VSSSVHAPLKSPGSEAARPCGHKKHSPGAQRRPEKPPFSYIALIVMAIQSSPAKRVTLSE 62

Query: 53  IYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFE 112
           IY FLQ  FPFFRG YQGWKNS+RHNLSLNECF+KLPK LGRPGKGHYWT+DP S+ MFE
Sbjct: 63  IYQFLQGRFPFFRGAYQGWKNSVRHNLSLNECFVKLPKGLGRPGKGHYWTIDPASEFMFE 122

Query: 113 EGSFRRRPRG 122
           EGSFRRRPRG
Sbjct: 123 EGSFRRRPRG 132

Source: Lethenteron camtschaticum

Species: Lethenteron camtschaticum

Genus: Lethenteron

Family: Petromyzontidae

Order: Petromyzontiformes

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|57337374|emb|CAH69695.1| forkhead transcription factor [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|307190328|gb|EFN74403.1| Forkhead box protein F2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322786617|gb|EFZ13012.1| hypothetical protein SINV_13476 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|156555811|ref|XP_001601863.1| PREDICTED: hypothetical protein LOC100117699 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|189235430|ref|XP_001812657.1| PREDICTED: similar to forkhead box F1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383853176|ref|XP_003702099.1| PREDICTED: uncharacterized protein LOC100878921 [Megachile rotundata] Back     alignment and taxonomy information
>gi|332016880|gb|EGI57689.1| Forkhead box protein F1-B [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|260798592|ref|XP_002594284.1| hypothetical protein BRAFLDRAFT_65139 [Branchiostoma floridae] gi|229279517|gb|EEN50295.1| hypothetical protein BRAFLDRAFT_65139 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|307192425|gb|EFN75641.1| Forkhead box protein F2 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
MGI|MGI:1347479 446 Foxf2 "forkhead box F2" [Mus m 0.851 0.282 0.723 1.8e-46
UNIPROTKB|E2QUB0 354 FOXF1 "Uncharacterized protein 0.783 0.327 0.766 3.8e-46
ZFIN|ZDB-GENE-050419-153 380 foxf1 "forkhead box F1" [Danio 0.783 0.305 0.766 4.8e-46
UNIPROTKB|F1MBH4 415 FOXF1 "Uncharacterized protein 0.783 0.279 0.766 6.2e-46
UNIPROTKB|Q12946 379 FOXF1 "Forkhead box protein F1 0.783 0.306 0.766 6.2e-46
UNIPROTKB|Q12947 444 FOXF2 "Forkhead box protein F2 0.783 0.261 0.771 6.2e-46
UNIPROTKB|Q4H3J0 575 Ci-FoxF "Transcription factor 0.763 0.196 0.8 6.2e-46
UNIPROTKB|F1RX14 399 FOXF2 "Uncharacterized protein 0.777 0.288 0.767 1e-45
MGI|MGI:1347470 378 Foxf1 "forkhead box F1" [Mus m 0.783 0.306 0.758 1e-45
RGD|1584229 378 LOC687536 "similar to Forkhead 0.783 0.306 0.758 1e-45
MGI|MGI:1347479 Foxf2 "forkhead box F2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 94/130 (72%), Positives = 102/130 (78%)

Query:     3 KXXXXXXXXXSGSVEKKKCT---RRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQ 59
             K         +GS   KK T   RR EKPPYSYIALIVMAIQSSP K+LTLSEIY FLQ 
Sbjct:    73 KSAASSGGAGAGSGGTKKATSGLRRPEKPPYSYIALIVMAIQSSPSKRLTLSEIYQFLQA 132

Query:    60 GFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRR 119
              FPFFRG YQGWKNS+RHNLSLNECF+KLPK LGRPGKGHYWT+DP S+ MFEEGSFRRR
Sbjct:   133 RFPFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRR 192

Query:   120 PRGKFKVEVQ 129
             PRG F+ + Q
Sbjct:   193 PRG-FRRKCQ 201
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0003677 "DNA binding" evidence=ISO;IDA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IDA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0005634 "nucleus" evidence=ISO;IDA
GO:0005667 "transcription factor complex" evidence=ISO;IBA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007389 "pattern specification process" evidence=IBA
GO:0008134 "transcription factor binding" evidence=ISO;IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0009888 "tissue development" evidence=IBA
GO:0030198 "extracellular matrix organization" evidence=IGI;IMP
GO:0042249 "establishment of planar polarity of embryonic epithelium" evidence=IGI;IMP
GO:0043565 "sequence-specific DNA binding" evidence=ISO
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IBA
GO:0048566 "embryonic digestive tract development" evidence=IGI
GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IMP
GO:0048806 "genitalia development" evidence=ISO
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0060021 "palate development" evidence=ISO
UNIPROTKB|E2QUB0 FOXF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-153 foxf1 "forkhead box F1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBH4 FOXF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q12946 FOXF1 "Forkhead box protein F1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q12947 FOXF2 "Forkhead box protein F2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4H3J0 Ci-FoxF "Transcription factor protein" [Ciona intestinalis (taxid:7719)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX14 FOXF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1347470 Foxf1 "forkhead box F1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1584229 LOC687536 "similar to Forkhead box protein F1 (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1) (FREAC-1) (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VS05FOXF_DROMENo assigned EC number0.54790.93910.2056yesN/A
Q61080FOXF1_MOUSENo assigned EC number0.77350.69590.2724yesN/A
Q12946FOXF1_HUMANNo assigned EC number0.77570.70270.2744yesN/A
Q28BS5FOXF1_XENTRNo assigned EC number0.84940.62830.2493yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
pfam0025096 pfam00250, Fork_head, Fork head domain 3e-50
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 3e-49
smart0033989 smart00339, FH, FORKHEAD 1e-48
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 2e-20
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 6e-18
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  155 bits (394), Expect = 3e-50
 Identities = 59/96 (61%), Positives = 76/96 (79%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSYIALI MAIQ SP K LTLSEIY ++   FP++R   QGW+NSIRHNLSLN+CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRG 122
           K+P++  +PGKG YWT+DP+S+ MFE G + +R + 
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 148
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG3563|consensus 454 100.0
KOG3562|consensus 277 100.0
KOG2294|consensus 454 100.0
KOG4385|consensus 581 99.91
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.85
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.6
PF0053877 Linker_histone: linker histone H1 and H5 family; I 95.32
smart0052666 H15 Domain in histone families 1 and 5. 95.14
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 94.02
PF0506672 HARE-HTH: HB1, ASXL, restriction endonuclease HTH 84.63
PF1433892 Mrr_N: Mrr N-terminal domain 81.74
KOG4012|consensus243 81.02
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-41  Score=244.72  Aligned_cols=96  Identities=59%  Similarity=1.152  Sum_probs=89.3

Q ss_pred             CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCCc
Q psy11227         27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD  106 (148)
Q Consensus        27 KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p~  106 (148)
                      ||||||++||++||++||+++|||+|||+||+.+||||+.+..+||||||||||+|+||+||++..+++|||++|+|+|+
T Consensus         1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~   80 (96)
T PF00250_consen    1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE   80 (96)
T ss_dssp             -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred             CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence            79999999999999999999999999999999999999999999999999999999999999998778999999999999


Q ss_pred             hhhhhhcCcccccCCC
Q psy11227        107 SQLMFEEGSFRRRPRG  122 (148)
Q Consensus       107 ~~~~~~~~~~rrr~r~  122 (148)
                      ....++++.+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~   96 (96)
T PF00250_consen   81 AIEEFEKGRFKRRRKR   96 (96)
T ss_dssp             HHHHHHHSCCSSSSSS
T ss_pred             HHHHHhcchhhhhhcc
Confidence            9999999999987653

Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG3563|consensus Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 Back     alignment and domain information
>PF14338 Mrr_N: Mrr N-terminal domain Back     alignment and domain information
>KOG4012|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 2e-32
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 6e-31
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 3e-29
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 4e-28
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 8e-27
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 6e-25
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 8e-25
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 1e-24
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 4e-16
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 1e-15
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 2e-15
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 8e-15
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 7e-14
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 2e-13
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 3e-13
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 3e-13
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 4e-13
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 4e-13
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 73/90 (81%)
Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSYIALI MAIQ++P KK+TL+ IY F+   FPF+R   QGW+NSIRHNLSLNECF+
Sbjct: 4   KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSF 116
           K+P+   +PGKG YWT+DPDS  MFE GSF
Sbjct: 64  KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 2e-63
2c6y_A111 Forkhead box protein K2; transcription regulation, 1e-62
2hdc_A97 Protein (transcription factor); structure, dyanami 2e-62
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 3e-62
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 3e-60
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 4e-52
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 1e-48
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 1e-48
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 5e-48
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 1e-47
3bpy_A85 FORK head domain, forkhead transcription factor FO 3e-46
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
 Score =  188 bits (480), Expect = 2e-63
 Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 26  EKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECF 85
            KPPYSYI+LI MAIQ +P K LTLSEIY ++   FP++R   Q W+NSIRH+LS N+CF
Sbjct: 2   AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61

Query: 86  LKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKV 126
           +K+ ++  +PGKG YW + P S  MFE G + RR + +FK+
Sbjct: 62  VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKL 101
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1uhm_A78 Histone H1, histone HHO1P; winged helix-turn-helix 91.97
1uss_A88 Histone H1; DNA binding protein, linker histone, D 91.86
2rqp_A88 Heterochromatin protein 1-binding protein 3; histo 91.27
1hst_A90 Histone H5; chromosomal protein; 2.60A {Gallus gal 90.58
1ust_A93 Histone H1; DNA binding protein, linker histone, D 89.19
2lso_A83 Histone H1X; structural genomics, northeast struct 81.65
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=9.4e-47  Score=273.16  Aligned_cols=99  Identities=53%  Similarity=1.004  Sum_probs=94.9

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227         25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD  104 (148)
Q Consensus        25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~  104 (148)
                      ++||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++..+++|||+||+|+
T Consensus         1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~   80 (102)
T 1vtn_C            1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH   80 (102)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred             CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             CchhhhhhcCcccccCCCC
Q psy11227        105 PDSQLMFEEGSFRRRPRGK  123 (148)
Q Consensus       105 p~~~~~~~~~~~rrr~r~~  123 (148)
                      |+++.+|++|.++||+++.
T Consensus        81 p~~~~~f~~g~~~rr~~~~   99 (102)
T 1vtn_C           81 PSSGNMFENGCYLRRQKRF   99 (102)
T ss_dssp             GGGCSTTCSSCSSSCSSCC
T ss_pred             cCHHHHhhcCCeecccccc
Confidence            9999999999998887663
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 Back     alignment and structure
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Back     alignment and structure
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13 Back     alignment and structure
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 148
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 3e-46
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 3e-46
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 2e-45
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 4e-36
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 1e-34
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 2e-34
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (363), Expect = 3e-46
 Identities = 49/96 (51%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSY  LIV AI  +P K+LTL+ IY+ + + +P++R   +GW+NSIRHNLSLN  F+
Sbjct: 3   KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62

Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSF-RRRPR 121
           K+P++   PGKG +W +DP S+    E +F +RRPR
Sbjct: 63  KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 95.4
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 95.02
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 94.79
d1ghca_75 Histone H1, globular domain {Chicken (Gallus gallu 89.89
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-45  Score=259.86  Aligned_cols=97  Identities=48%  Similarity=0.956  Sum_probs=92.4

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227         25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD  104 (148)
Q Consensus        25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~  104 (148)
                      +.||||||++||++||++||+++|||+|||+||+++||||+....|||||||||||+|+||+||++..+++|||+||+|+
T Consensus         1 ~~KP~~sY~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~   80 (98)
T d2c6ya1           1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID   80 (98)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEEC
T ss_pred             CCCCCccHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEEC
Confidence            46999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CchhhhhhcCcccccCC
Q psy11227        105 PDSQLMFEEGSFRRRPR  121 (148)
Q Consensus       105 p~~~~~~~~~~~rrr~r  121 (148)
                      |++...|.++.+++|++
T Consensus        81 p~~~~~~~~~~~~krr~   97 (98)
T d2c6ya1          81 PASESKLIEQAFRKRRP   97 (98)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             ccHHhhhhcchhhccCC
Confidence            99999999998887654
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure