Psyllid ID: psy11229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-----
Protein Sequence
MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNSGSGQGGGRSKSAFRSDKMQP
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEccccccHHHHcccccEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccEEEEcccccEEEccccccccccHHHHHHHHHHHHccccHHcccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHEEEEEccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEEccccHHHHHccccEEEEEcccccEEEEcccccccccccccEccccccccEEEEccccEEEEEccccccccccEEEEccEEEcccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEcccccccEcHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEcccccccccEEEcccccccccEccEEEEcccEEEEcccccEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHcEEEEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEEEEccccccccccccccccccccHHHccHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEccEEEcccccccccccccccccccccccccccEEEEEccHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msqkelsevaeteeieNVRVFVRVrplskkesdaghvdiATVDLLNGiitvknpagsaheppktftfdtvtpystvdLLNGiitvknpagsaheppktftfdtvfdanskqldiynetarpIVDKvlsgfngtifaygqtgtgktftmegvnnvpelkgiipnsFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDqclevkerpdigvyclevkerpdigVYVKDLSAYIANNADDMEKIMSLGNKNRSVGatamnevssRSHAIFSIIIEtssglggkrttgeNWRLWAEAQGSVQMGRLHLVDLAgserqaktgasgqRLKEASKINLSLSTLGNVISALVdgkcthipyrnsKLTRILQDslggnsktvmcatvgpasynyeetISTLRYASRVKKICNkarvnqdpkDALLIKYQKEISELKKKLeeasvpppreeptpnpepeldetepcvepseviedeTDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYtgnnmrkivplpedttatqiaqpdfshlyryypsekvknsgsgqgggrsksafrsdkmqp
Flexible Loop (DISEMBL)
msqkelsevaeteeienvrvfvrvrplskkesdaghvdIATVDLLNGIITVknpagsaheppktFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSknkdqclevkerpdigvyclevkerpdigVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIietssglggkRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQaktgasgqrlkEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNkarvnqdpkdaLLIKYQKEISELKKkleeasvpppreeptpnpepeldetepCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHrkqkeeelkkniqekdaeridmEEKYSslqeeseglskklKKVSSMLLaakeerkdvqrenrkeiegfldnVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSekvknsgsgqgggrsksafrsdkmqp
Low Complexity Region (SEG)
MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQkeiselkkkleeASVpppreeptpnpepeldetepCVEPSEVIEDETDAELKRAQSDHQSMveklellqkkvlvGGENLLEKaeiqqqlldaaaqeleHRKQKEEELKKNIQEKDAERIDMEEKYsslqeeseglskklkkvssmllAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNsgsgqgggrsksAFRSDKMQP
Disordered region (IsUnstruct)
****************NVRVFVRVRPL*****DAGHVDIATVDLLNGIITVKNPA*******KTFTFDTVTPYSTVDLLNGIITVKNPA*******KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD***************************HAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL*********************INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKY*******************************************************************LLQKKVLVGGENLL***********************************************************************************IEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYY****************************
Disordered Region (DISOPRED)
*******************VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAG*AHEPPKTFTFDTVTPYSTVDLLNGI************PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQC*********GVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG*************WAEAQGSVQMGRLHLVDLAGSERQA*****GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK*******************************************************************************************************************************************************************************AIIQKFIPTKYLELMTQNATWNEDIGEWEL*****************************************************************
Disordered Region (DISEMBL)
************EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSE************KEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKK******************************PSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDME*****************KKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEK************************
Disordered Region (DISPRO)
***************ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG*************LKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEA***************ELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMR***************QPDFSHLYRYYPS**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAExxxxxxxxxxxxxxxxxxxxxVLVGGENLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNSGSGQGGGRSKSAFRSDKMQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	705	2.2.26 [Sep-21-2011]
Q4R628	702	Kinesin-like protein KIF3	N/A	N/A	0.893	0.897	0.523	0.0
Q9Y496	699	Kinesin-like protein KIF3	yes	N/A	0.893	0.901	0.525	0.0
Q5R4H3	702	Kinesin-like protein KIF3	yes	N/A	0.893	0.897	0.522	0.0
P28741	701	Kinesin-like protein KIF3	yes	N/A	0.893	0.898	0.526	0.0
P46872	699	Kinesin-II 85 kDa subunit	yes	N/A	0.853	0.861	0.511	0.0
O15066	747	Kinesin-like protein KIF3	no	N/A	0.839	0.792	0.438	1e-148
P46871	742	Kinesin-II 95 kDa subunit	no	N/A	0.804	0.764	0.433	1e-139
Q61771	747	Kinesin-like protein KIF3	no	N/A	0.519	0.489	0.568	1e-133
P46869	786	Kinesin-like protein FLA1	N/A	N/A	0.828	0.743	0.393	1e-130
Q5R706	793	Kinesin-like protein KIF3	no	N/A	0.778	0.692	0.401	1e-125

>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/747 (52%), Positives = 497/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDG--------------NMHVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRDQAGKKKVSPDKMIEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSAKP 693

Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro (By similarity). Plays a role in primary cilia formation.
Macaca fascicularis (taxid: 9541)

>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/744 (52%), Positives = 493/744 (66%), Gaps = 114/744 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  +PEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEA-----------------------------------SVPPPR--------E 448
            ELKKKLEE                                     V P +        +
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGKKKVSPDKMIEMQAKID 427

Query: 449 EPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLL 508
           E     E +LD  E     +    ++ + +L +AQ +HQS++EKL  L+KKV+VGG +LL
Sbjct: 428 EERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLL 487

Query: 509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568
            KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +KKLK
Sbjct: 488 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTKKLK 547

Query: 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQN 628
           KV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++   
Sbjct: 548 KVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENY 607

Query: 629 ATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS--- 685
             WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S   
Sbjct: 608 VHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQSLMK 666

Query: 686 ----GSGQGGGRSKSAFRSDKMQP 705
                + +G  R K+  R    +P
Sbjct: 667 LERPRTSKGKARPKTGRRKRSAKP 690

Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro. Plays a role in primary cilia formation.

Homo sapiens (taxid: 9606)

>sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/747 (52%), Positives = 496/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  +PEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEIGEDGEKRKKRRDQAGKKKVSPDKMIEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E++ EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQGEIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSAKP 693

Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro (By similarity). Plays a role in primary cilia formation.

Pongo abelii (taxid: 9601)

>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/746 (52%), Positives = 496/746 (66%), Gaps = 116/746 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VP L+G+IPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV------------------------------PPPREEPTPNP----EPE 457
            ELKKKLEE                                    +++ +P+     + +
Sbjct: 368 EELKKKLEEGEEVSGSDISGSEEDDEEGELGEDGEKKKKRRDQAGKKKVSPDKMVEMQAK 427

Query: 458 LDETEPCVEPSEVIEDE----TDAELKR-------AQSDHQSMVEKLELLQKKVLVGGEN 506
           +DE    +E    +E+E      AEL+R       AQ +HQS++EKL  L+KKV+VGG +
Sbjct: 428 IDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVD 487

Query: 507 LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKK 566
           LL KAE Q++LL+ +  ELE R+++ E+L+K ++EK+ ER+D+EEKY+SLQEE++G +KK
Sbjct: 488 LLAKAEEQEKLLEESNMELEERRRRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKK 547

Query: 567 LKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMT 626
           LKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++ 
Sbjct: 548 LKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMIE 607

Query: 627 QNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS- 685
               WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S 
Sbjct: 608 NYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKERDPFEVDLSHVYLAYTEESLRQSL 666

Query: 686 ------GSGQGGGRSKSAFRSDKMQP 705
                  + +G  R K   R    +P
Sbjct: 667 MKLERPRTSKGKARPKMGRRKRSAKP 692

Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro. Plays a role in primary cilia formation.

Mus musculus (taxid: 10090)

>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/706 (51%), Positives = 478/706 (67%), Gaps = 104/706 (14%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +NVRV VR RPL+ KE+  G                               F +V     
Sbjct: 9   DNVRVVVRCRPLNSKETGQG-------------------------------FKSVVK--- 34

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           +D + G + V NP   + EPPK+FTFDTVF   +KQ D+YN+TARPIVD ++ G+NGTIF
Sbjct: 35  MDEMRGTVQVTNPNAPSGEPPKSFTFDTVFAPGAKQTDVYNQTARPIVDAIIEGYNGTIF 94

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKTFTMEGV + PEL+GIIPNSFAHIFGHIAK  E+V+FLVRVSY EIYNEE+
Sbjct: 95  AYGQTGTGKTFTMEGVRSQPELRGIIPNSFAHIFGHIAKEQENVRFLVRVSYLEIYNEEV 154

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           +DLL K++              + LEVKERPD+GVYVKDLSA++ NNADDM++IM+LGNK
Sbjct: 155 KDLLGKDQQ-------------HRLEVKERPDVGVYVKDLSAFVVNNADDMDRIMTLGNK 201

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NRSVGAT MNE SSRSHAIF+I +E S              +  + +  V++G+LH+VDL
Sbjct: 202 NRSVGATNMNESSSRSHAIFTITLERSD-------------MGLDKEQHVRVGKLHMVDL 248

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQ KTGA+GQRLKEA+KINLSLSTLGNVIS+LVDGK THIPYRNSKLTR+LQDSLG
Sbjct: 249 AGSERQTKTGATGQRLKEATKINLSLSTLGNVISSLVDGKSTHIPYRNSKLTRLLQDSLG 308

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK 435
           GN+KTVMCA +GPA YNY+ETISTLRYA+R K I NKA++N+DPKDALL ++QKEI ELK
Sbjct: 309 GNAKTVMCANIGPAEYNYDETISTLRYANRAKNIKNKAKINEDPKDALLREFQKEIEELK 368

Query: 436 KKLEEASVPPPREEPTPNPE-------------------------PEL---------DET 461
           K++ E+      +E + + E                         PE+         +E 
Sbjct: 369 KQISESGEGLDDDEESGSEESGDEEAGEGGVKKKRKGKNPKRKLSPEIMAAMQKKIDEEK 428

Query: 462 EPCVEPSEVIEDETD----------AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKA 511
           +   E  +++E++ +          +EL +AQ D + + EKL  +QKK++VGG +LL K+
Sbjct: 429 KALEEKKDMVEEDRNTVHRELQRRESELHKAQDDQKILNEKLNAIQKKLIVGGVDLLAKS 488

Query: 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVS 571
           E Q+QLL+ +A E++ R  K+E ++K ++E++ ER+D+EEKYSSLQ+E+ G +KKLKKV 
Sbjct: 489 EEQEQLLEQSALEMKERMAKQESMRKMMEEREQERMDIEEKYSSLQDEAHGKTKKLKKVW 548

Query: 572 SMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATW 631
           +ML+ AK E  D+Q E+++E+E  L+NVR++++E      II  FIP ++ E++ Q   W
Sbjct: 549 TMLMQAKSEVADMQAEHQREMEALLENVRELSRELRLSMLIIDSFIPQEFQEMIEQYVHW 608

Query: 632 NEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYY 677
           NEDIGEW+LKCVAYTGNNMRK  P+ +   +    + D S+++  Y
Sbjct: 609 NEDIGEWQLKCVAYTGNNMRKQTPVADKDKSLAYGEADLSNVFLTY 654

Strongylocentrotus purpuratus (taxid: 7668)

>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1

 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 310/707 (43%), Positives = 435/707 (61%), Gaps = 115/707 (16%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E+VRV VR RP++ KE                               K  ++D V     
Sbjct: 8   ESVRVVVRCRPMNGKE-------------------------------KAASYDKVV---D 33

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           VD+  G ++VKNP G+AHE PKTFTFD V+D N+KQ ++Y+ET RP+VD VL GFNGTIF
Sbjct: 34  VDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIF 93

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKT+TMEG+   PE +G+IPNSF HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 94  AYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEI 152

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLLSK++ + LE+KERPD              GVYVKDLS+++  +  ++E +M++GN+
Sbjct: 153 RDLLSKDQTKRLELKERPDT-------------GVYVKDLSSFVTKSVKEIEHVMNVGNQ 199

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           NRSVGAT MNE SSRSHAIF I IE S  GL G              +  +++G+L+LVD
Sbjct: 200 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDG--------------ENHIRVGKLNLVD 245

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKLTR+LQDSL
Sbjct: 246 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 305

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISEL 434
           GGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL ++Q+EI+ L
Sbjct: 306 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQEEIARL 365

Query: 435 KKKLEEASV--------------------------------PPPREEPTPNPEPELD-ET 461
           K +LE+ S+                                   +++     + +L+ E 
Sbjct: 366 KAQLEKRSIGRRKRREKRREGGGSGGGGEEEEEEGEEGEEEGDDKDDYWREQQEKLEIEK 425

Query: 462 EPCVEPSEVIEDETDAELK---------RAQSDHQSMV-EKLELLQKKVLVGGENLLEKA 511
              VE   ++ +E    LK         R + D   M+  K++ ++ K+LVGG+N+++  
Sbjct: 426 RAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMESKLLVGGKNIVDHT 485

Query: 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVS 571
             QQ++L+   QE+  +K++E E+++ ++ +D E ++++E YSSLQ+E +  +KKLKK+ 
Sbjct: 486 NEQQKILEQKRQEIAEQKRREREIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLF 545

Query: 572 SMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATW 631
           S L A K E  D+Q E+ KE +       ++T+E   +  II+ FIP +    +   A +
Sbjct: 546 SKLQAVKAEIHDLQEEHIKERQELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFF 605

Query: 632 NEDIGEWELKCVAYTGNN--MRKIV-------PLPEDTTATQIAQPD 669
           +E+   W+L  +    N   M++ V       PL +    + + +P+
Sbjct: 606 DEEEDHWKLHPITRLENQQMMKRPVSAVGYKRPLSQHARMSMMIRPE 652

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Homo sapiens (taxid: 9606)

>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/671 (43%), Positives = 410/671 (61%), Gaps = 104/671 (15%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E V+V VR RP++ KE   GH  I  +D   G++ V N                      
Sbjct: 7   ETVKVVVRCRPMNSKEISQGHKRIVEMDNKRGLVEVTN---------------------- 44

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                       P G   EP K+FTFDTV+D NSKQ+D+Y+ET R +V+ VL GFNGTIF
Sbjct: 45  ------------PKGPPGEPNKSFTFDTVYDWNSKQIDLYDETFRSLVESVLQGFNGTIF 92

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKTFTMEGV + PEL+G+IPNSF HIF HIA+  ++ +FLVR SY EIY EEI
Sbjct: 93  AYGQTGTGKTFTMEGVRSNPELRGVIPNSFEHIFTHIART-QNQQFLVRASYLEIYQEEI 151

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLL+K++      K+R       L++KERPD GVYVKDLS+++  +  ++E +M++GN 
Sbjct: 152 RDLLAKDQ------KKR-------LDLKERPDTGVYVKDLSSFVTKSVKEIEHVMTVGNN 198

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NRSVG+T MNE SSRSHAIF I IE S              L  + +  +++G+L+LVDL
Sbjct: 199 NRSVGSTNMNEHSSRSHAIFIITIECSE-------------LGVDGENHIRVGKLNLVDL 245

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQAKTGA+G RLKEA+KINLSLS LGNVISALVDGK +HIPYR+SKLTR+LQDSLG
Sbjct: 246 AGSERQAKTGATGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLG 305

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK 435
           GN+KTVM A +GPASYN++ETI+TLRYA+R K I NK ++N+DPKDALL ++Q+EIS LK
Sbjct: 306 GNAKTVMVANMGPASYNFDETITTLRYANRAKNIKNKPKINEDPKDALLREFQEEISRLK 365

Query: 436 KKLEEASVPPPREEPTPNPEPE--------------------------------LDETEP 463
           + L++   P    +     +P                                  +E E 
Sbjct: 366 QALDKKG-PSDGRKKGKKRKPGEQGGDDDIEDETEEEGDEMDEEEMYKESQQKLEEEKEK 424

Query: 464 CVEPSEVIEDETDAELKRAQ-------SDHQS--MVE-KLELLQKKVLVGGENLLEKAEI 513
            +    +I +E    L   Q        +HQ   M+E K++ ++ K+LVGG+++++    
Sbjct: 425 IMANQSMIAEEKQKLLSEVQKRQGEIKKEHQQKEMLEGKIKAMESKLLVGGKSIVDHTNE 484

Query: 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573
           QQ+ ++     L   K +E ++++ ++E+D + +++E  +SSLQ+E E  +KKLKK+ + 
Sbjct: 485 QQRKIEEQRLLLAEEKNRERDMERKLKEQDDKTVEIEGTFSSLQQEVEVKTKKLKKLFAK 544

Query: 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNE 633
           L + K + +D+Q E+ +E +       ++ +E   ++ I   FIP +    +T  A ++E
Sbjct: 545 LQSYKSDIQDLQDEHARERQELEQTQNELIRELKLKKVIADNFIPVEERTKITTRAVFDE 604

Query: 634 DIGEWELKCVA 644
           +  EW L  +A
Sbjct: 605 ETEEWLLTPLA 615

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1

 Score =  476 bits (1225), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/429 (56%), Positives = 306/429 (71%), Gaps = 63/429 (14%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E+VRV VR RP++ KE                               K  ++D V     
Sbjct: 8   ESVRVVVRCRPMNGKE-------------------------------KAASYDKVV---D 33

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           VD+  G ++VKNP G++HE PKTFTFD V+D N+KQ ++Y+ET RP+VD VL GFNGTIF
Sbjct: 34  VDVKLGQVSVKNPKGTSHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIF 93

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKT+TMEGV   PE +G+IPNSF HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 94  AYGQTGTGKTYTMEGVRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEI 152

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLLSK++ + LE+KERPD              GVYVKDLS+++  +  ++E +M++GN+
Sbjct: 153 RDLLSKDQTKRLELKERPDT-------------GVYVKDLSSFVTKSVKEIEHVMNVGNQ 199

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           NRSVGAT MNE SSRSHAIF I IE S  GL G              +  +++G+L+LVD
Sbjct: 200 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDG--------------ENHIRVGKLNLVD 245

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKLTR+LQDSL
Sbjct: 246 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 305

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISEL 434
           GGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL ++Q+EI+ L
Sbjct: 306 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQEEIARL 365

Query: 435 KKKLEEASV 443
           K +LE+ S+
Sbjct: 366 KAQLEKRSI 374

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Mus musculus (taxid: 10090)

>sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 278/707 (39%), Positives = 400/707 (56%), Gaps = 123/707 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E+V+V VR RPL+ KE   G   I  +D                                
Sbjct: 9   ESVKVVVRCRPLNGKEKADGRSRIVDMD-------------------------------- 36

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           VD   G + V+NP   A EPPK FTFD V+D N +Q D+++ TARP++D  + G+NGTIF
Sbjct: 37  VDA--GQVKVRNPKADASEPPKAFTFDQVYDWNCQQRDVFDITARPLIDSCIEGYNGTIF 94

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGK+ TMEG +  PEL+G+IPN+F ++F  IA+   + +FLVR SY EIYNEE+
Sbjct: 95  AYGQTGTGKSHTMEGKDEPPELRGLIPNTFRYVFEIIARDSGTKEFLVRSSYLEIYNEEV 154

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLL K+  + +E+KE PD GV             YVKDLS ++  N ++M K++  G  
Sbjct: 155 RDLLGKDHSKKMELKESPDRGV-------------YVKDLSQFVCKNYEEMNKVLLAGKD 201

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR VGAT MN+ SSRSH+IF+I IE    L  +    +      +    V++G+L+LVDL
Sbjct: 202 NRQVGATLMNQDSSRSHSIFTITIECIEKL--ESAAAQKPGAKKDDSNHVRVGKLNLVDL 259

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQ KTGA+G RLKE  KINLSL+ LGNVISALVDGK  HIPYR+SKLTR+LQDSLG
Sbjct: 260 AGSERQDKTGATGDRLKEGIKINLSLTALGNVISALVDGKSGHIPYRDSKLTRLLQDSLG 319

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK 435
           GN+KTVM A +GPA +NY+ET+STLRYA+R K I NK ++N+DPKDA+L ++Q+EI +LK
Sbjct: 320 GNTKTVMVANIGPADWNYDETMSTLRYANRAKNIQNKPKINEDPKDAMLRQFQEEIKKLK 379

Query: 436 KKLEEA--------SVPPPREEPTPNPEPELDETEPCVEPSEV-IEDETDAELK------ 480
           ++L           ++P     PT       +E +P ++  +  +  E +A++K      
Sbjct: 380 EQLAARAAGGGGPITMPSGGGSPTQKIVERTEEVDPDIDAIKAQMRAELEAKMKSDISTE 439

Query: 481 -----------------RAQSDHQSMVE----------KLELLQKKVLVGGENLLEKAEI 513
                            +A  D Q   E          K +  + + + G    +EK + 
Sbjct: 440 ALDKAREEAEAAAKKQLQAIIDDQGKTEAQKKAARDALKKQAEEARAIAGA---IEKEKQ 496

Query: 514 QQQLLDAAAQELEHR---------------KQKEEELKKNI-----QEKDAER------- 546
           ++ +L++  +E+E +               KQK E++K+       QE++A+R       
Sbjct: 497 EKAVLESRIKEMEGKIVVGGVNMLEKVDELKQKSEDIKREAAIRKRQEEEAKRRLEELQA 556

Query: 547 --IDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604
             +D + K++SL EE    S++LKK+       K E  D+Q + ++E EG L++ R +T+
Sbjct: 557 AQVDADAKFASLDEEINVKSRQLKKLFEKYQGKKGELADLQEQFQREREGMLEDYRILTQ 616

Query: 605 EYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNMR 651
           +   +  II  FIP  Y + + Q+  W +    W + C+AY GN +R
Sbjct: 617 QIKLKNLIIACFIPPDYQDKIMQHCHWQDYDSSWNIDCIAYAGNAVR 663

Probably involved in flagellar assembly and maintenance. May play a role in flagellar synthesis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q5R706|KIF3C_PONAB Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/700 (40%), Positives = 400/700 (57%), Gaps = 151/700 (21%)

Query: 9   VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFD 68
            ++T+  E ++V  R RPLS+KE  AGH  I T+D                         
Sbjct: 2   ASKTKASEALKVVARCRPLSRKEEAAGHEQILTMD------------------------- 36

Query: 69  TVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLS 128
                  V L  G +T++NP  +  E PKTFTFD V+DA+SKQ D+Y+ET RP++D VL 
Sbjct: 37  -------VKL--GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQ 87

Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
           GFNGT+FAYGQTGTGKT+TM+G    PEL+G+IPN+F HIF HI+++ ++ ++LVR SY 
Sbjct: 88  GFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRS-QNQQYLVRASYL 146

Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
           EIY EEIRDLLSK   + LE+KE P+ GV             Y+KDLS+++  N  ++E 
Sbjct: 147 EIYQEEIRDLLSKEPGKRLELKENPETGV-------------YIKDLSSFVTKNVKEIEH 193

Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
           +M+LGN+ R+VG+T MNEVSSRSHAIF I +E S                ++ Q  +++G
Sbjct: 194 VMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER-------------GSDGQDHIRVG 240

Query: 309 RLHLVDLAGSERQAKTGAS------------------------GQRLKEASKINLSLSTL 344
           +L+LVDLAGSERQ K G +                        G+R KEASKINLSLS L
Sbjct: 241 KLNLVDLAGSERQNKAGPNTAGGASTPSSGGSGGGGGSGGGAGGERPKEASKINLSLSAL 300

Query: 345 GNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYAS 404
           GNVI+AL   + THIPYR+SKLTR+LQDSLGGN+KT+M AT+GPAS++Y+E++STLR+A+
Sbjct: 301 GNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFAN 360

Query: 405 RVKKICNKARVNQDPKDALLIKYQKEISELKKKLEE------------------ASVPP- 445
           R K I NK RVN+DPKD LL ++Q+EI+ LK +LE+                   S PP 
Sbjct: 361 RAKNIKNKPRVNEDPKDTLLREFQEEIARLKAQLEKRGMLGKRPRRKSSRGKKAVSAPPG 420

Query: 446 -----------PREEPTPN-----PEPEL-------------DETEPCVEPSEVIEDE-- 474
                        EE   N     P+P L             ++ E   E    I+D+  
Sbjct: 421 YPESPVIEAWVAEEEDDNNNNHRPPQPILESALEKNMENYLQEQKERLEEEKAAIQDDRS 480

Query: 475 -TDAELKRAQSDHQSMVEK--------LELL-------QKKVLVGGENLLEKAEIQQQLL 518
               E ++   + + M+EK         ELL       + K+L+GG N+++    QQ++L
Sbjct: 481 LVSEEKQKLLEEKEKMLEKDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKML 540

Query: 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
           +   QE+  +K++E E+++ +  +D E +++   Y+SLQ+E E  +KKLKK+ + L A K
Sbjct: 541 ELKRQEIAEQKRREREMQQEMMLRDEETMELRGTYTSLQQEVEVKTKKLKKLYAKLQAVK 600

Query: 579 EERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIP 618
            E +D   E  +  +   +   + T+E   +  II+ FIP
Sbjct: 601 AEIQDQHDEYIRVRQDLEEAQNEQTRELKLKYLIIENFIP 640

Microtubule-based anterograde translocator for membranous organelles.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	705
338713294	699	PREDICTED: kinesin family member 3A isof	0.899	0.907	0.521	0.0
338713298	702	PREDICTED: kinesin family member 3A isof	0.903	0.907	0.519	0.0
335283463	699	PREDICTED: kinesin family member 3A isof	0.889	0.896	0.524	0.0
75076234	702	RecName: Full=Kinesin-like protein KIF3A	0.893	0.897	0.523	0.0
387539182	699	kinesin-like protein KIF3A [Macaca mulat	0.893	0.901	0.526	0.0
311250135	702	PREDICTED: kinesin family member 3A isof	0.893	0.897	0.523	0.0
397518329	702	PREDICTED: kinesin-like protein KIF3A is	0.893	0.897	0.522	0.0
395817594	702	PREDICTED: kinesin-like protein KIF3A is	0.893	0.897	0.523	0.0
395817596	699	PREDICTED: kinesin-like protein KIF3A is	0.889	0.896	0.524	0.0
46852174	699	kinesin-like protein KIF3A [Homo sapiens	0.893	0.901	0.525	0.0

>gi|338713294|ref|XP_003362868.1| PREDICTED: kinesin family member 3A isoform 2 [Equus caballus]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/754 (52%), Positives = 498/754 (66%), Gaps = 120/754 (15%)

Query: 6   LSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTF 65
           +S+  + E  +NV+V VR RPL+++E    +    +VD + G ITV              
Sbjct: 3   ISKSEKPESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV-------------- 48

Query: 66  TFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
                                +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D 
Sbjct: 49  ---------------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDS 87

Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRV 185
           VL G+NGTIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRV
Sbjct: 88  VLEGYNGTIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRV 147

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           SY EIYNEE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADD
Sbjct: 148 SYLEIYNEEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADD 194

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGS 304
           M++IM+LG+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 
Sbjct: 195 MDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------H 240

Query: 305 VQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
           V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNS
Sbjct: 241 VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNS 300

Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
           KLTR+LQDSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL
Sbjct: 301 KLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALL 360

Query: 425 IKYQKEISELKKKLEEA-----------------------------------SVPPPREE 449
            ++QKEI ELKKKLEE                                     V P +  
Sbjct: 361 RQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGEIGEDGEKKKKRRGKKKVSPDK-- 418

Query: 450 PTPNPEPELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQK 498
                + ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+K
Sbjct: 419 -MVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEK 477

Query: 499 KVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE 558
           KV+VGG +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQE
Sbjct: 478 KVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQE 537

Query: 559 ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIP 618
           E++G +KKLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP
Sbjct: 538 EAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIP 597

Query: 619 TKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYP 678
             Y E++     WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y 
Sbjct: 598 QDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYT 656

Query: 679 SEKVKNS-------GSGQGGGRSKSAFRSDKMQP 705
            E ++ S        + +G  R K+  R    +P
Sbjct: 657 EESLRQSLMKLERPRTSKGKARPKTGRRKRSAKP 690

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338713298|ref|XP_003362869.1| PREDICTED: kinesin family member 3A isoform 3 [Equus caballus]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/754 (51%), Positives = 501/754 (66%), Gaps = 117/754 (15%)

Query: 6   LSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTF 65
           +S+  + E  +NV+V VR RPL+++E    +    +VD + G ITV              
Sbjct: 3   ISKSEKPESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV-------------- 48

Query: 66  TFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
                                +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D 
Sbjct: 49  ---------------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDS 87

Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRV 185
           VL G+NGTIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRV
Sbjct: 88  VLEGYNGTIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRV 147

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           SY EIYNEE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADD
Sbjct: 148 SYLEIYNEEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADD 194

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGS 304
           M++IM+LG+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 
Sbjct: 195 MDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------H 240

Query: 305 VQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
           V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNS
Sbjct: 241 VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNS 300

Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
           KLTR+LQDSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL
Sbjct: 301 KLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALL 360

Query: 425 IKYQKEISELKKKLEEASV-------------------------------PPPREEPTPN 453
            ++QKEI ELKKKLEE                                     +++ +P+
Sbjct: 361 RQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGEIGEDGEKKKKRRDQAGKKKVSPD 420

Query: 454 P----EPELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQK 498
                + ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+K
Sbjct: 421 KMVEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEK 480

Query: 499 KVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE 558
           KV+VGG +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQE
Sbjct: 481 KVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQE 540

Query: 559 ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIP 618
           E++G +KKLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP
Sbjct: 541 EAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIP 600

Query: 619 TKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYP 678
             Y E++     WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y 
Sbjct: 601 QDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYT 659

Query: 679 SEKVKNS-------GSGQGGGRSKSAFRSDKMQP 705
            E ++ S        + +G  R K+  R    +P
Sbjct: 660 EESLRQSLMKLERPRTSKGKARPKTGRRKRSAKP 693

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|335283463|ref|XP_003354323.1| PREDICTED: kinesin family member 3A isoform 2 [Sus scrofa]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/747 (52%), Positives = 494/747 (66%), Gaps = 120/747 (16%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEA-----------------------------------SVPPPREEPTPNPEP 456
            ELKKKLEE                                     V P +       + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEEEDEEGEVGEDGEKRKKRRGKKKVSPDK---MVEMQA 424

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 425 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 484

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 485 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 544

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 545 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMI 604

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 605 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 663

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 664 LMKLERPRTSKGKARPKTGRRKRSTKP 690

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|75076234|sp|Q4R628.1|KIF3A_MACFA RecName: Full=Kinesin-like protein KIF3A; AltName: Full=Microtubule plus end-directed kinesin motor 3A gi|67970206|dbj|BAE01447.1| unnamed protein product [Macaca fascicularis] gi|380809178|gb|AFE76464.1| kinesin-like protein KIF3A [Macaca mulatta] gi|384945040|gb|AFI36125.1| kinesin-like protein KIF3A [Macaca mulatta]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/747 (52%), Positives = 497/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDG--------------NMHVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRDQAGKKKVSPDKMIEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSAKP 693

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387539182|gb|AFJ70218.1| kinesin-like protein KIF3A [Macaca mulatta]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/744 (52%), Positives = 493/744 (66%), Gaps = 114/744 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEA-----------------------------------SVPPPR--------E 448
            ELKKKLEE                                     V P +        +
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGKKKVSPDKMIEMQAKID 427

Query: 449 EPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLL 508
           E     E +LD  E     +    ++ + +L +AQ +HQS++EKL  L+KKV+VGG +LL
Sbjct: 428 EERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLL 487

Query: 509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568
            KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +KKLK
Sbjct: 488 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTKKLK 547

Query: 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQN 628
           KV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++   
Sbjct: 548 KVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENY 607

Query: 629 ATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS--- 685
             WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S   
Sbjct: 608 VHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQSLMK 666

Query: 686 ----GSGQGGGRSKSAFRSDKMQP 705
                + +G  R K+  R    +P
Sbjct: 667 LERPRTSKGKARPKTGRRKRSAKP 690

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|311250135|ref|XP_003123984.1| PREDICTED: kinesin family member 3A isoform 1 [Sus scrofa]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/747 (52%), Positives = 497/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEEEDEEGEVGEDGEKRKKRRDQAGKKKVSPDKMVEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSTKP 693

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397518329|ref|XP_003829344.1| PREDICTED: kinesin-like protein KIF3A isoform 1 [Pan paniscus]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/747 (52%), Positives = 497/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  +PEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRKDQAGKKKVSPDKMIEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSAKP 693

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395817594|ref|XP_003782252.1| PREDICTED: kinesin-like protein KIF3A isoform 1 [Otolemur garnettii]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/747 (52%), Positives = 497/747 (66%), Gaps = 117/747 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEASV-------------------------------PPPREEPTPNP----EP 456
            ELKKKLEE                                     +++ +P+     + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEDGEIGEDGEKRKKRRDQAGKKKVSPDKMVEMQA 427

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 428 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 487

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 488 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 547

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 548 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMI 607

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 608 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 666

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 667 LMKLERPRTSKGKARPKTGRRKRSAKP 693

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395817596|ref|XP_003782253.1| PREDICTED: kinesin-like protein KIF3A isoform 2 [Otolemur garnettii]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/747 (52%), Positives = 494/747 (66%), Gaps = 120/747 (16%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  VPEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEA-----------------------------------SVPPPREEPTPNPEP 456
            ELKKKLEE                                     V P +       + 
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEDGEIGEDGEKRKKRRGKKKVSPDK---MVEMQA 424

Query: 457 ELDETEPCVEPSEVIEDE-----------TDAELKRAQSDHQSMVEKLELLQKKVLVGGE 505
           ++DE    +E    +E+E            + +L +AQ +HQS++EKL  L+KKV+VGG 
Sbjct: 425 KIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGV 484

Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
           +LL KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +K
Sbjct: 485 DLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTK 544

Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELM 625
           KLKKV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++
Sbjct: 545 KLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMI 604

Query: 626 TQNATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS 685
                WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S
Sbjct: 605 ENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQS 663

Query: 686 -------GSGQGGGRSKSAFRSDKMQP 705
                   + +G  R K+  R    +P
Sbjct: 664 LMKLERPRTSKGKARPKTGRRKRSAKP 690

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|46852174|ref|NP_008985.3| kinesin-like protein KIF3A [Homo sapiens] gi|426349915|ref|XP_004042530.1| PREDICTED: kinesin-like protein KIF3A isoform 2 [Gorilla gorilla gorilla] gi|296439481|sp|Q9Y496.4|KIF3A_HUMAN RecName: Full=Kinesin-like protein KIF3A; AltName: Full=Microtubule plus end-directed kinesin motor 3A gi|119582724|gb|EAW62320.1| kinesin family member 3A, isoform CRA_b [Homo sapiens] gi|410252500|gb|JAA14217.1| kinesin family member 3A [Pan troglodytes] gi|410297072|gb|JAA27136.1| kinesin family member 3A [Pan troglodytes] gi|410333705|gb|JAA35799.1| kinesin family member 3A [Pan troglodytes]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/744 (52%), Positives = 493/744 (66%), Gaps = 114/744 (15%)

Query: 13  EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTP 72
           E  +NV+V VR RPL+++E    +    +VD + G ITV                     
Sbjct: 10  ESCDNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV--------------------- 48

Query: 73  YSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG 132
                         +   S++EPPKTFTFDTVF   SKQLD+YN TARPI+D VL G+NG
Sbjct: 49  --------------HKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNG 94

Query: 133 TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192
           TIFAYGQTGTGKTFTMEGV  +PEL+GIIPNSFAHIFGHIAKA+   +FLVRVSY EIYN
Sbjct: 95  TIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYN 154

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           EE+RDLL K++ Q LEVKERP             D+GVY+KDLSAY+ NNADDM++IM+L
Sbjct: 155 EEVRDLLGKDQTQRLEVKERP-------------DVGVYIKDLSAYVVNNADDMDRIMTL 201

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETS-SGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           G+KNRSVGAT MNE SSRSHAIF+I IE S  G+ G                 V+MG+LH
Sbjct: 202 GHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNM--------------HVRMGKLH 247

Query: 312 LVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQ 371
           LVDLAGSERQAKTGA+GQRLKEA+KINLSLSTLGNVISALVDGK TH+PYRNSKLTR+LQ
Sbjct: 248 LVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQ 307

Query: 372 DSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEI 431
           DSLGGNSKT+MCA +GPA YNY+ETISTLRYA+R K I NKAR+N+DPKDALL ++QKEI
Sbjct: 308 DSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEI 367

Query: 432 SELKKKLEEA-----------------------------------SVPPPR--------E 448
            ELKKKLEE                                     V P +        +
Sbjct: 368 EELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGKKKVSPDKMIEMQAKID 427

Query: 449 EPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLL 508
           E     E +LD  E     +    ++ + +L +AQ +HQS++EKL  L+KKV+VGG +LL
Sbjct: 428 EERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLL 487

Query: 509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568
            KAE Q++LL+ +  ELE R+++ E+L++ ++EK+ ER+D+EEKY+SLQEE++G +KKLK
Sbjct: 488 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTKKLK 547

Query: 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQN 628
           KV +ML+AAK E  D+Q+E+++EIEG L+N+RQ+++E   Q  II  FIP  Y E++   
Sbjct: 548 KVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENY 607

Query: 629 ATWNEDIGEWELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNS--- 685
             WNEDIGEW+LKCVAYTGNNMRK  P+P D       + D SH+Y  Y  E ++ S   
Sbjct: 608 VHWNEDIGEWQLKCVAYTGNNMRKQTPVP-DKKEKDPFEVDLSHVYLAYTEESLRQSLMK 666

Query: 686 ----GSGQGGGRSKSAFRSDKMQP 705
                + +G  R K+  R    +P
Sbjct: 667 LERPRTSKGKARPKTGRRKRSAKP 690

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	705
WB|WBGene00002230	646	klp-20 [Caenorhabditis elegans	0.258	0.281	0.591	2.5e-142
UNIPROTKB|P46869	786	FLA10 "Kinesin-like protein FL	0.479	0.430	0.558	1.5e-128
UNIPROTKB|F1LPE4	701	Kif3a "Protein Kif3a" [Rattus	0.278	0.279	0.746	6.4e-128
UNIPROTKB|F1LQZ3	698	Kif3a "Protein Kif3a" [Rattus	0.278	0.280	0.746	6.4e-128
UNIPROTKB|F1LS55	725	Kif3a "Protein Kif3a" [Rattus	0.278	0.270	0.746	6.4e-128
UNIPROTKB|Q4R628	702	KIF3A "Kinesin-like protein KI	0.276	0.277	0.738	1e-127
UNIPROTKB|E9PES4	726	KIF3A "Kinesin-like protein KI	0.276	0.268	0.738	1e-127
UNIPROTKB|J3KPF9	702	KIF3A "Kinesin-like protein KI	0.276	0.277	0.738	1e-127
UNIPROTKB|Q9Y496	699	KIF3A "Kinesin-like protein KI	0.276	0.278	0.738	1e-127
UNIPROTKB|E2QSW6	702	KIF3A "Uncharacterized protein	0.278	0.279	0.746	1e-127

WB|WBGene00002230 klp-20 [Caenorhabditis elegans (taxid:6239)]

 Score = 554 (200.1 bits), Expect = 2.5e-142, Sum P(4) = 2.5e-142
 Identities = 116/196 (59%), Positives = 139/196 (70%)

Query:    91 SAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150
             S  +PP+TF FD VF  N+ Q+ +YN  ARPIV+ VL G+NGTIFAYGQTGTGKTFTM G
Sbjct:    44 SQEDPPRTFYFDAVFSPNTDQMTVYNVAARPIVENVLKGYNGTIFAYGQTGTGKTFTMAG 103

Query:   151 VNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVK 210
                  E++GIIPNSFAHIF HIAK      FLVRVSY EIYNEEIRDLLSK+ +      
Sbjct:   104 DLEPVEMRGIIPNSFAHIFDHIAKCQHDTTFLVRVSYLEIYNEEIRDLLSKDHN------ 157

Query:   211 ERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSR 270
                  G   LE+KERPD+GVYV++LS     NA  M+ +M  G+KNR VGATAMN  SSR
Sbjct:   158 -----GN--LEIKERPDVGVYVRNLSNPTVENASKMQALMEFGSKNRKVGATAMNLESSR 210

Query:   271 SHAIFSIIIETS-SGL 285
             SHA+F++ IE+  +GL
Sbjct:   211 SHAMFTVTIESCRNGL 226

GO:0003777 "microtubule motor activity" evidence=IEA;IDA

GO:0007018 "microtubule-based movement" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0030993 "axonemal heterotrimeric kinesin-II complex" evidence=IPI

UNIPROTKB|P46869 FLA10 "Kinesin-like protein FLA10" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 979 (349.7 bits), Expect = 1.5e-128, Sum P(3) = 1.5e-128
 Identities = 197/353 (55%), Positives = 257/353 (72%)

Query:    76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
             +D+  G + V+NP   A EPPK FTFD V+D N +Q D+++ TARP++D  + G+NGTIF
Sbjct:    35 MDVDAGQVKVRNPKADASEPPKAFTFDQVYDWNCQQRDVFDITARPLIDSCIEGYNGTIF 94

Query:   136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
             AYGQTGTGK+ TMEG +  PEL+G+IPN+F ++F  IA+   + +FLVR SY EIYNEE+
Sbjct:    95 AYGQTGTGKSHTMEGKDEPPELRGLIPNTFRYVFEIIARDSGTKEFLVRSSYLEIYNEEV 154

Query:   196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
             RDLL K+  + +E+KE PD          R   GVYVKDLS ++  N ++M K++  G  
Sbjct:   155 RDLLGKDHSKKMELKESPD----------R---GVYVKDLSQFVCKNYEEMNKVLLAGKD 201

Query:   256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
             NR VGAT MN+ SSRSH+IF+I IE    L  +    +      +    V++G+L+LVDL
Sbjct:   202 NRQVGATLMNQDSSRSHSIFTITIECIEKL--ESAAAQKPGAKKDDSNHVRVGKLNLVDL 259

Query:   316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
             AGSERQ KTGA+G RLKE  KINLSL+ LGNVISALVDGK  HIPYR+SKLTR+LQDSLG
Sbjct:   260 AGSERQDKTGATGDRLKEGIKINLSLTALGNVISALVDGKSGHIPYRDSKLTRLLQDSLG 319

Query:   376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 428
             GN+KTVM A +GPA +NY+ET+STLRYA+R K I NK ++N+DPKDA+L ++Q
Sbjct:   320 GNTKTVMVANIGPADWNYDETMSTLRYANRAKNIQNKPKINEDPKDAMLRQFQ 372

GO:0009296 "flagellum assembly" evidence=IMP

GO:0031514 "motile cilium" evidence=IDA

GO:0035720 "intraflagellar anterograde transport" evidence=IMP

GO:0097014 "microtubule-based flagellar cytoplasm" evidence=IDA

UNIPROTKB|F1LPE4 Kif3a "Protein Kif3a" [Rattus norvegicus (taxid:10116)]

 Score = 765 (274.4 bits), Expect = 6.4e-128, Sum P(3) = 6.4e-128
 Identities = 156/209 (74%), Positives = 178/209 (85%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   168 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 227

Query:   280 ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINL 339
             E S     K   G N          V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINL
Sbjct:   228 ECSE----KGVDG-NMH--------VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINL 274

Query:   340 SLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST 399
             SLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIST
Sbjct:   275 SLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIST 334

Query:   400 LRYASRVKKICNKARVNQDPKDALLIKYQ 428
             LRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 LRYANRAKNIKNKARINEDPKDALLRQFQ 363

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1LQZ3 Kif3a "Protein Kif3a" [Rattus norvegicus (taxid:10116)]

 Score = 765 (274.4 bits), Expect = 6.4e-128, Sum P(3) = 6.4e-128
 Identities = 156/209 (74%), Positives = 178/209 (85%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   168 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 227

Query:   280 ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINL 339
             E S     K   G N          V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINL
Sbjct:   228 ECSE----KGVDG-NMH--------VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINL 274

Query:   340 SLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST 399
             SLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIST
Sbjct:   275 SLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIST 334

Query:   400 LRYASRVKKICNKARVNQDPKDALLIKYQ 428
             LRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 LRYANRAKNIKNKARINEDPKDALLRQFQ 363

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1LS55 Kif3a "Protein Kif3a" [Rattus norvegicus (taxid:10116)]

 Score = 765 (274.4 bits), Expect = 6.4e-128, Sum P(3) = 6.4e-128
 Identities = 156/209 (74%), Positives = 178/209 (85%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   168 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 227

Query:   280 ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINL 339
             E S     K   G N          V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINL
Sbjct:   228 ECSE----KGVDG-NMH--------VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINL 274

Query:   340 SLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST 399
             SLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIST
Sbjct:   275 SLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIST 334

Query:   400 LRYASRVKKICNKARVNQDPKDALLIKYQ 428
             LRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 LRYANRAKNIKNKARINEDPKDALLRQFQ 363

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|Q4R628 KIF3A "Kinesin-like protein KIF3A" [Macaca fascicularis (taxid:9541)]

 Score = 766 (274.7 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
 Identities = 155/210 (73%), Positives = 178/210 (84%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   169 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 228

Query:   280 ETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKIN 338
             E S  G+ G                 V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KIN
Sbjct:   229 ECSEKGIDGNM--------------HVRMGKLHLVDLAGSERQAKTGATGQRLKEATKIN 274

Query:   339 LSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS 398
             LSLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIS
Sbjct:   275 LSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIS 334

Query:   399 TLRYASRVKKICNKARVNQDPKDALLIKYQ 428
             TLRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 TLRYANRAKNIKNKARINEDPKDALLRQFQ 364

GO:0042384 "cilium assembly" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

UNIPROTKB|E9PES4 KIF3A "Kinesin-like protein KIF3A" [Homo sapiens (taxid:9606)]

 Score = 766 (274.7 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
 Identities = 155/210 (73%), Positives = 178/210 (84%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   169 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 228

Query:   280 ETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKIN 338
             E S  G+ G                 V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KIN
Sbjct:   229 ECSEKGIDGNM--------------HVRMGKLHLVDLAGSERQAKTGATGQRLKEATKIN 274

Query:   339 LSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS 398
             LSLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIS
Sbjct:   275 LSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIS 334

Query:   399 TLRYASRVKKICNKARVNQDPKDALLIKYQ 428
             TLRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 TLRYANRAKNIKNKARINEDPKDALLRQFQ 364

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|J3KPF9 KIF3A "Kinesin-like protein KIF3A" [Homo sapiens (taxid:9606)]

 Score = 766 (274.7 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
 Identities = 155/210 (73%), Positives = 178/210 (84%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   169 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 228

Query:   280 ETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKIN 338
             E S  G+ G                 V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KIN
Sbjct:   229 ECSEKGIDGNM--------------HVRMGKLHLVDLAGSERQAKTGATGQRLKEATKIN 274

Query:   339 LSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS 398
             LSLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIS
Sbjct:   275 LSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIS 334

Query:   399 TLRYASRVKKICNKARVNQDPKDALLIKYQ 428
             TLRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 TLRYANRAKNIKNKARINEDPKDALLRQFQ 364

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q9Y496 KIF3A "Kinesin-like protein KIF3A" [Homo sapiens (taxid:9606)]

 Score = 766 (274.7 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
 Identities = 155/210 (73%), Positives = 178/210 (84%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   169 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 228

Query:   280 ETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKIN 338
             E S  G+ G                 V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KIN
Sbjct:   229 ECSEKGIDGNM--------------HVRMGKLHLVDLAGSERQAKTGATGQRLKEATKIN 274

Query:   339 LSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS 398
             LSLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIS
Sbjct:   275 LSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIS 334

Query:   399 TLRYASRVKKICNKARVNQDPKDALLIKYQ 428
             TLRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   335 TLRYANRAKNIKNKARINEDPKDALLRQFQ 364

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006996 "organelle organization" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0072383 "plus-end-directed vesicle transport along microtubule" evidence=TAS

GO:0008574 "plus-end-directed microtubule motor activity" evidence=TAS

GO:0016939 "kinesin II complex" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

UNIPROTKB|E2QSW6 KIF3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 765 (274.4 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
 Identities = 156/209 (74%), Positives = 178/209 (85%)

Query:   220 LEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIII 279
             LEVKERPD+GVY+KDLSAY+ NNADDM++IM+LG+KNRSVGAT MNE SSRSHAIF+I I
Sbjct:   169 LEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI 228

Query:   280 ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINL 339
             E S     K   G N          V+MG+LHLVDLAGSERQAKTGA+GQRLKEA+KINL
Sbjct:   229 ECSE----KGVDG-NMH--------VRMGKLHLVDLAGSERQAKTGATGQRLKEATKINL 275

Query:   340 SLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST 399
             SLSTLGNVISALVDGK TH+PYRNSKLTR+LQDSLGGNSKT+MCA +GPA YNY+ETIST
Sbjct:   276 SLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETIST 335

Query:   400 LRYASRVKKICNKARVNQDPKDALLIKYQ 428
             LRYA+R K I NKAR+N+DPKDALL ++Q
Sbjct:   336 LRYANRAKNIKNKARINEDPKDALLRQFQ 364

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4H3	KIF3A_PONAB	No assigned EC number	0.5220	0.8936	0.8974	yes	N/A
P28741	KIF3A_MOUSE	No assigned EC number	0.5268	0.8936	0.8987	yes	N/A
P46872	KRP85_STRPU	No assigned EC number	0.5113	0.8539	0.8612	yes	N/A
Q4R628	KIF3A_MACFA	No assigned EC number	0.5234	0.8936	0.8974	N/A	N/A
Q9Y496	KIF3A_HUMAN	No assigned EC number	0.5255	0.8936	0.9012	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	705
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	0.0
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	1e-153
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	1e-152
cd00106	328	cd00106, KISc, Kinesin motor domain	1e-143
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-131
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	1e-122
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-118
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	1e-118
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-114
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-113
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-108
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-94
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	4e-91
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	5e-86
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	6e-86
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	5e-73
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	4e-70
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	7e-66
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	2e-42
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  545 bits (1407), Expect = 0.0
 Identities = 239/394 (60%), Positives = 280/394 (71%), Gaps = 61/394 (15%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           ENV+V VR RPL+K+E   G  +I  VD   G +TV NP   A EPPK FTFD V     
Sbjct: 1   ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAV----- 55

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                                        +D NS Q D+YNETARP+VD VL G+NGTIF
Sbjct: 56  -----------------------------YDPNSTQEDVYNETARPLVDSVLEGYNGTIF 86

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKTFTMEGV   PEL+GIIPNSFAHIFGHIAKA E+V+FLVRVSY EIYNEE+
Sbjct: 87  AYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA-ENVQFLVRVSYLEIYNEEV 145

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLL K++ + LE+KERPD GVY             VKDLS ++  NA++M+K+M+LGNK
Sbjct: 146 RDLLGKDQKKKLELKERPDRGVY-------------VKDLSMFVVKNAEEMDKLMTLGNK 192

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NRSVGAT MNE SSRSH+IF+I IE S         GE+          +++G+L+LVDL
Sbjct: 193 NRSVGATNMNEDSSRSHSIFTITIECS-------EKGEDGE------NHIRVGKLNLVDL 239

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQ+KTGA+G RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKLTR+LQDSLG
Sbjct: 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLG 299

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           GNSKTVMCA +GPA YNY+ET+STLRYA+R K I
Sbjct: 300 GNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  445 bits (1147), Expect = e-153
 Identities = 172/389 (44%), Positives = 224/389 (57%), Gaps = 65/389 (16%)

Query: 23  RVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGI 82
           RVRPL+++E   G  DI  VD  +                                    
Sbjct: 1   RVRPLNEREKSRGSSDIVNVDETDSEDKESVV---------------------------- 32

Query: 83  ITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGT 142
                   +     KTFTFD VFD  + Q  +Y ETA+P+V+ VL G+N TIFAYGQTG+
Sbjct: 33  -------ITNKGREKTFTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGS 85

Query: 143 GKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEEIRDLLSK 201
           GKT+TMEG +   E  GIIP +   +F  I +  +    F VRVSY EIYNE+I DLLS 
Sbjct: 86  GKTYTMEG-DPPEEEPGIIPRALEDLFERIEERKERKWSFSVRVSYLEIYNEKIYDLLSP 144

Query: 202 NKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGA 261
           +  +              L ++E P  GVYVK L+     +A+++ +++ LGNKNR+V +
Sbjct: 145 SSKKKK------------LRIREDPKKGVYVKGLTEVEVTSAEEVLELLELGNKNRTVAS 192

Query: 262 TAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQ 321
           T MNE SSRSHAIF+I +E  +                        G+L+LVDLAGSER 
Sbjct: 193 TNMNEESSRSHAIFTITVEQRNRDTDGSVK---------------TGKLNLVDLAGSERA 237

Query: 322 AKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKT 380
           +KTG A G+RLKEA+ IN SLS LGNVI+AL + + +HIPYR+SKLTR+LQDSLGGNSKT
Sbjct: 238 SKTGAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDSLGGNSKT 297

Query: 381 VMCATVGPASYNYEETISTLRYASRVKKI 409
           +M A + P+  NYEET+STLR+ASR K I
Sbjct: 298 LMIANISPSDSNYEETLSTLRFASRAKNI 326

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  444 bits (1144), Expect = e-152
 Identities = 182/401 (45%), Positives = 230/401 (57%), Gaps = 67/401 (16%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV VRVRPL+K+E                              P    F         
Sbjct: 1   NIRVVVRVRPLNKREKSRKS-------------------------PSVVPFPD------- 28

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                  T+   +    +  K FTFD VFDA + Q D++ ETA P+VD VL G+N TIFA
Sbjct: 29  ---KVGKTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFA 85

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
           YGQTG+GKT+TM G    P+  GIIP +   +F  I K +E  +F V+VSY EIYNE+IR
Sbjct: 86  YGQTGSGKTYTMIGT---PDSPGIIPRALKDLFEKIDKREEGWQFSVKVSYLEIYNEKIR 142

Query: 197 DLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256
           DLL+ +                 LE++E    GVYVK L+    ++ +++  ++  GNKN
Sbjct: 143 DLLNPSSK--------------KLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKN 188

Query: 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLA 316
           R+V AT MNE SSRSHA+F+I +E       K     +        GS +  +L+LVDLA
Sbjct: 189 RTVAATKMNEESSRSHAVFTITVE------QKIKNSSS--------GSGKASKLNLVDLA 234

Query: 317 GSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-GKCTHIPYRNSKLTRILQDSLG 375
           GSER  KTGA G RLKEA  IN SLS LGNVI+AL    K  HIPYR+SKLTR+LQDSLG
Sbjct: 235 GSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLG 294

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
           GNSKT+M A V P+S N EET+STLR+ASR K+I NK  VN
Sbjct: 295 GNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  420 bits (1081), Expect = e-143
 Identities = 180/393 (45%), Positives = 225/393 (57%), Gaps = 67/393 (17%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV VR+RPL+ +ES                                 T D      TV
Sbjct: 1   NIRVVVRIRPLNGRESK--------------------------SEESCITVD---DNKTV 31

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                  T+  P       PK+FTFD VFD NS Q D+Y  TA+P+V+ VL G+NGTIFA
Sbjct: 32  -------TLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFA 84

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADES-VKFLVRVSYFEIYNEEI 195
           YGQTG+GKT+TM G    P+  GIIP +   +F  I +  E    F V VSY EIYNE++
Sbjct: 85  YGQTGSGKTYTMFG---SPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKV 141

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLLS       E   +P      L ++E P  GVYVK L+     +A+D   ++  G K
Sbjct: 142 YDLLSP------EPPSKP------LSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLK 189

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+  +TAMNE SSRSHAIF+I +E  +     R+               +  +L+LVDL
Sbjct: 190 NRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSI--------------KSSKLNLVDL 235

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSL 374
           AGSER  KTGA G RLKEA  IN SLS LGNVISAL  G+   HIPYR+SKLTR+LQDSL
Sbjct: 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSL 295

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           GGNSKT+M A + P+S NY+ET+STLR+ASR K
Sbjct: 296 GGNSKTLMIANISPSSENYDETLSTLRFASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  389 bits (1001), Expect = e-131
 Identities = 175/395 (44%), Positives = 228/395 (57%), Gaps = 70/395 (17%)

Query: 15  IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
             N++V  R RPL++KE   G   I                        T +        
Sbjct: 1   ECNIKVVCRFRPLNEKEELRGSKSIVKFP-----------------GEDTVSI------- 36

Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                           +  +  KTF+FD VF  N+ Q D+YN  A+PIVD VL+G+NGTI
Sbjct: 37  ----------------AGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI 80

Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           FAYGQTG+GKT+TMEG    PELKGIIP     IF HI+  DE+++F V+VSY EIY E+
Sbjct: 81  FAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEK 140

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           IRDLL  +KD               L+V E  + GVYVK L+    ++ +++ ++++ G 
Sbjct: 141 IRDLLDVSKDN--------------LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGK 186

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
            NR+V +T MNE SSRSH+IF I ++  +   G +  G                +L LVD
Sbjct: 187 SNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRG----------------KLFLVD 230

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSE+ +KTGA GQ L+EA KIN SLS LGNVI+AL DGK THIPYR+SKLTRILQDSL
Sbjct: 231 LAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSL 290

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           GGNS+T +     P+SYN  ET+STLR+ +R K I
Sbjct: 291 GGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  367 bits (945), Expect = e-122
 Identities = 155/395 (39%), Positives = 213/395 (53%), Gaps = 73/395 (18%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF RVRPL   ES                           E     +F         
Sbjct: 3   NIRVFCRVRPLLPSEST--------------------------EYSSVISFPDED----- 31

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
               G I +    G      K+F+FD VFD ++ Q D++ E + P+V   L G+N  IFA
Sbjct: 32  ---GGTIELSKGTGK----KKSFSFDRVFDPDASQEDVFEEVS-PLVQSALDGYNVCIFA 83

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESV--KFLVRVSYFEIYNEE 194
           YGQTG+GKT+TMEG    PE  GIIP +   +F + A+  +     + +  S  EIYNE 
Sbjct: 84  YGQTGSGKTYTMEGP---PENPGIIPRALEQLF-NTAEELKEKGWSYTITASMLEIYNET 139

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           IRDLL+       +           LE+K       YV +L+    ++ +++ ++++LG+
Sbjct: 140 IRDLLATKPAPKKK-----------LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGS 188

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           KNRSV +T MNE SSRSHA+F + I  ++   G++T G                +L+LVD
Sbjct: 189 KNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRG----------------KLNLVD 232

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSER  K+GA+G RLKEA  IN SLS LG+VISAL     +H+PYRNSKLT +LQDSL
Sbjct: 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-SHVPYRNSKLTYLLQDSL 291

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           GGNSKT+M   + P   N  ET+ +LR+ASRV+ +
Sbjct: 292 GGNSKTLMFVNISPLESNLSETLCSLRFASRVRSV 326

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  359 bits (923), Expect = e-118
 Identities = 162/416 (38%), Positives = 231/416 (55%), Gaps = 75/416 (18%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNP--AGSAHEPPKTFTFDTVTPY 73
            NV+V VRVRP + +E + G   I  V +   + T+KNP  A +  + PK+F+FD    Y
Sbjct: 1   ANVKVAVRVRPFNSREKNRGSKCI--VQMPGKVTTLKNPKAADATRKKPKSFSFDHS--Y 56

Query: 74  STVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGT 133
            + D                   +   + +       Q D++ +  R ++D    G+N  
Sbjct: 57  WSHD------------------SEDPHYAS-------QEDVFEDLGRELLDHAFEGYNVC 91

Query: 134 IFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYN 192
           +FAYGQTG+GK++TM G     E KGIIP     +F  I    ++++ + V VSY EIYN
Sbjct: 92  LFAYGQTGSGKSYTMMG---YKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYN 148

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           E++RDLL+  K                L+V+E P +G YV+DLS     + +D++ ++  
Sbjct: 149 EKVRDLLNPKKKN-----------KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEE 197

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSII-----IETSSGLGGKRTTGENWRLWAEAQGSVQM 307
           GNK+R+  +T MN+ SSRSHA+F+I+     ++  + L  ++ +                
Sbjct: 198 GNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVS---------------- 241

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-------GKCTHIP 360
            ++ LVDLAGSER + TGA G RLKE S IN SL+TLG VISAL D        K + IP
Sbjct: 242 -KISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIP 300

Query: 361 YRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
           YR+S LT +L+++LGGNSKT M AT+ PA  NYEET+STLRYA R KKI N A VN
Sbjct: 301 YRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  357 bits (918), Expect = e-118
 Identities = 155/397 (39%), Positives = 210/397 (52%), Gaps = 64/397 (16%)

Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           VRV VRVRPL  KE   G   +                          +     P  TV 
Sbjct: 3   VRVAVRVRPLLPKELLEGC-QVCV------------------------SVVPGEPQVTV- 36

Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
                              K+FTFD VFD ++ Q ++YN    P+VD +  G+N T+ AY
Sbjct: 37  ----------------GTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAY 80

Query: 138 GQTGTGKTFTMEGVNNVPEL---KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           GQTG+GKT+TM       E     GIIP +  HIF  I +  +   F ++VS+ E+YNEE
Sbjct: 81  GQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEE 140

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           +RDLLS +        E+  I     +++E     + +  L+    N+A ++   +  G+
Sbjct: 141 VRDLLSPSTS------EKSPI-----QIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGS 189

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
            +R+  +TAMN  SSRSHAIF+I +E        R  G    +  + + S    + H VD
Sbjct: 190 LSRTTASTAMNSQSSRSHAIFTITLEQ------TRKNGPIAPMSGDDKNSTLTSKFHFVD 243

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD--GKCTHIPYRNSKLTRILQD 372
           LAGSER  KTGA+G RLKE   IN  L  LGNVISAL D   K +H+PYR+SKLTR+LQD
Sbjct: 244 LAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQD 303

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           SLGGNS T+M A V PA  N+EET++TL+YA+R + I
Sbjct: 304 SLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNI 340

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score =  346 bits (889), Expect = e-114
 Identities = 155/395 (39%), Positives = 219/395 (55%), Gaps = 59/395 (14%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           ++ V VRVRP ++KE   G   +  V +++  + V               FD   P    
Sbjct: 1   SLTVAVRVRPFNEKEKQEGTRRV--VKVVDDRMLV---------------FD---PKDEE 40

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           D    +   +N           ++FD VFD  S Q ++Y  T +P+VD VL+G+N T+FA
Sbjct: 41  DAFRNLRARRNK-------ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFA 93

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
           YG TG GKT TM G ++ P   G++  +   +F  I +  +  +F V +SY EIYNE IR
Sbjct: 94  YGATGAGKTHTMLGTDSDP---GLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIR 150

Query: 197 DLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256
           DLLS +                 LE++E P+ G+ V  L+ +   +A+++ +++  GN+N
Sbjct: 151 DLLSPSSGP--------------LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRN 196

Query: 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLA 316
           R+   T  N  SSRSHA+  I +         RT   N          V++G+L L+DLA
Sbjct: 197 RTQEPTEANATSSRSHAVLQITVRQKD-----RTASIN--------QQVRIGKLSLIDLA 243

Query: 317 GSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSL 374
           GSER + T   GQRLKE + IN SL  LGN I+ALVDGK    HIPYR+SKLTR+L+DSL
Sbjct: 244 GSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSL 303

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           GGN KTVM A + P+S +YEET +TL+YA+R K I
Sbjct: 304 GGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score =  344 bits (885), Expect = e-113
 Identities = 162/411 (39%), Positives = 216/411 (52%), Gaps = 70/411 (17%)

Query: 17  NVRVFVRVRPLSKKESDAG-HVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           N++V VR RP + +E      V +        II     A                  ST
Sbjct: 3   NIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADK---------------QST 47

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                                KT+TFD VF   + Q+++Y++   PI+D+VL G+N TIF
Sbjct: 48  ---------------------KTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIF 86

Query: 136 AYGQTGTGKTFTMEGVNN--------VPELKGIIPNSFAHIFGHIAKADESVKFLVRVSY 187
           AYGQTGTGKT+TMEG           +    GIIP +   +F  +   +   ++ V+VSY
Sbjct: 87  AYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNT--EYSVKVSY 144

Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
            E+YNEE+ DLLS   D          + ++     +    GV ++ L     NNA++  
Sbjct: 145 LELYNEELFDLLSSESD------LNKPLRIFDDTNNKG---GVVIQGLEEITVNNANEGL 195

Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
           K++  G+  R   AT MN+ SSRSH+IFSI I        K TT     L       V++
Sbjct: 196 KLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHI------KETTISGEEL-------VKI 242

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 367
           G+L+LVDLAGSE   ++GA  +R +EA  IN SL TLG VI+ALV+ K  HIPYR SKLT
Sbjct: 243 GKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE-KSPHIPYRESKLT 301

Query: 368 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 418
           R+LQDSLGG +KT + AT+ PAS N EET+STL YA R K I NK  VNQ 
Sbjct: 302 RLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score =  331 bits (850), Expect = e-108
 Identities = 157/394 (39%), Positives = 215/394 (54%), Gaps = 74/394 (18%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
            ++V VRVRPL+ +ESD   V  +  +                        +T++     
Sbjct: 1   KIKVSVRVRPLNPRESDNEQVAWSIDN-----------------------DNTISL---- 33

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                             P ++FTFD VF   S   ++Y   A+P+V   L G+NGTIFA
Sbjct: 34  --------------EESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
           YGQT +GKTFTM G    P   GIIP +   IF  I    +  +FL+RVSY EIYNE+I+
Sbjct: 80  YGQTSSGKTFTMSGDEQEP---GIIPLAVRDIFQRIQDTPDR-EFLLRVSYLEIYNEKIK 135

Query: 197 DLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256
           DLLS +  +              L ++E P+ GV V  L+  I  + + + ++++ G KN
Sbjct: 136 DLLSPSPQE--------------LRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKN 181

Query: 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLA 316
           R VG T  NE SSRSH IF + IE+                     G+V++  L+L+DLA
Sbjct: 182 RHVGETDFNERSSRSHTIFQLTIESRERG-------------DSESGTVRVSTLNLIDLA 228

Query: 317 GSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSLG 375
           GSER ++TGA G+R KE S IN SL TLG VIS L +GK   HIPYR+SKLTRILQ SL 
Sbjct: 229 GSERASQTGA-GERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLS 287

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           GN++T +  T+ PAS + EET++TL++ASR KK+
Sbjct: 288 GNARTAIICTISPASSHVEETLNTLKFASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score =  295 bits (756), Expect = 3e-94
 Identities = 157/410 (38%), Positives = 221/410 (53%), Gaps = 91/410 (22%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
            V+V VR+RP ++ E+D G          + ++   +P                      
Sbjct: 2   AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHP---------------------- 39

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                              P+ FTFD V D+N+ Q D++    +P+V+  LSG+NG+IFA
Sbjct: 40  -------------------PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFA 80

Query: 137 YGQTGTGKTFTMEG-----VNNVPELKGIIPNSFAHIFGHI----AKADESVKFLVRVSY 187
           YGQTG+GKT+TM G       +   L+G+IP  F ++F  I     K  + +KFL + S+
Sbjct: 81  YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSF 140

Query: 188 FEIYNEEIRDLL---SKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD 244
            EIYNE+I DLL   S+N                 L+++E    GVYV++L+    ++ +
Sbjct: 141 LEIYNEQITDLLDPTSRN-----------------LKIREDIKKGVYVENLTEEYVSSYE 183

Query: 245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGS 304
           D+ +++  G  NR V AT+MN  SSRSHA+F+  IE+                W +   S
Sbjct: 184 DVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIES----------------WEKKASS 227

Query: 305 V--QMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD---GKCTHI 359
              +  RL+LVDLAGSERQ   GA G RLKEA  IN SLSTLG+VI ALVD   GK  H+
Sbjct: 228 TNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHV 287

Query: 360 PYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           PYR+SKLT +L+DSLGGN+KT + A V P+S  + ET+STL++A R K I
Sbjct: 288 PYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score =  287 bits (735), Expect = 4e-91
 Identities = 151/390 (38%), Positives = 205/390 (52%), Gaps = 57/390 (14%)

Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           ++VFVRVRP              T       I +     S           +  P   V 
Sbjct: 2   IQVFVRVRP--------------TPTKQGSSIKLGPDGKSV---------SSNLPKDLVR 38

Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
                  V N          +F FD VF  N+ Q ++Y   A+P+VD  L G+NGTIFAY
Sbjct: 39  ------GVVNNQQEDF----SFKFDGVFH-NASQEEVYETVAKPVVDSALDGYNGTIFAY 87

Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRD 197
           GQTG GKTFTM G     + +G+IP +   +F  +A    +  + V VSY EIYNE++ D
Sbjct: 88  GQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM-RATKTYTVHVSYLEIYNEQLYD 146

Query: 198 LLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
           LL    +    +          + + E  +  ++VK LS + A   ++   ++ LG  NR
Sbjct: 147 LLGDTPEALESLPA--------VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNR 198

Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317
           ++  T+MN+ SSRSH IF+I +E+ S   G                 V++ +L+LVDLAG
Sbjct: 199 TIAETSMNQASSRSHCIFTIHLESRSREAGSEV--------------VRLSKLNLVDLAG 244

Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGN 377
           SER +KTG SGQ LKEA  IN SLS L  VI+AL +   TH+PYRNSKLT +L+DSLGGN
Sbjct: 245 SERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGN 304

Query: 378 SKTVMCATVGPASYNYEETISTLRYASRVK 407
            KTVM AT+     N +ET+STLR+A RV 
Sbjct: 305 CKTVMLATIWVEPSNLDETLSTLRFAQRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score =  281 bits (720), Expect = 5e-86
 Identities = 168/508 (33%), Positives = 257/508 (50%), Gaps = 64/508 (12%)

Query: 68  DTVTPYSTVDLLNGIITVKNPAGSAHE-----PPKTFTFDTVFDANSKQLDIYNETARPI 122
             +     +        + N +  +H         T+ FD VF  ++ Q D+Y ET +P+
Sbjct: 22  SDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPL 81

Query: 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL 182
           +D +L G+N T+FAYGQTG+GKT+TM G     E  GIIP S   +F  +     +  F 
Sbjct: 82  IDSLLLGYNCTVFAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLEDLSMTKDFA 138

Query: 183 VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANN 242
           V +SY EIYNE+I DLLS N++               L ++E   +GV V  L+    ++
Sbjct: 139 VSISYLEIYNEKIYDLLSPNEES--------------LNIREDSLLGVKVAGLTEKHVSS 184

Query: 243 ADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQ 302
            +++  ++  G KNR+  +T +N+ SSRSH+IF I + + + + G   T           
Sbjct: 185 KEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETS---------- 234

Query: 303 GSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-GKCTHIPY 361
                 +L LVDLAGSER A+TG  G RLKE + IN SL TLGNVI+AL D  K  HIPY
Sbjct: 235 ------KLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPY 288

Query: 362 RNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKD 421
           R SKLTR+LQDSLGGN  T +  T+ P+S ++EETI+TL++ASR K I NK +VN     
Sbjct: 289 RESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS---- 344

Query: 422 ALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKR 481
                  +EI E+K  L E       E        E+       + S+       A ++ 
Sbjct: 345 --SSDSSREIEEIKFDLSED----RSEI-------EILVFREQSQLSQSSLSGIFAYMQS 391

Query: 482 AQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEH--------RKQKEE 533
            + + +++  +++L+ K ++ G     +  + +     +  Q L          R+++  
Sbjct: 392 LKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELS 451

Query: 534 ELKKNIQEKDAERIDMEEKYSSLQEESE 561
           + K  I + +  R D+    SS+ EE+ 
Sbjct: 452 KKKTKIHKLNKLRHDLSSLLSSIPEETS 479

Length = 568

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score =  272 bits (699), Expect = 6e-86
 Identities = 136/395 (34%), Positives = 191/395 (48%), Gaps = 76/395 (19%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEP-PKTFTFDTVTPYS 74
             + V VR RPL+ KE   G  D+ + +  N  +TV       HEP  K           
Sbjct: 1   MKITVAVRKRPLNDKELSKGETDVVSCES-NPTVTV-------HEPKTK----------- 41

Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
            VDL    I              TF FD VFD      ++Y  T +P++  V  G   T 
Sbjct: 42  -VDL-TKYIE-----------KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATC 88

Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           FAYGQTG+GKT+TM G  N     G+   +   IF  +A+ ++     V VS+FEIY  +
Sbjct: 89  FAYGQTGSGKTYTMLGDENQE---GLYALAARDIFRLLAQPND--DLGVTVSFFEIYGGK 143

Query: 195 IRDLLSKNKD-QCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253
           + DLL+  K    LE  +                  V +  L+     + D++ +++  G
Sbjct: 144 LFDLLNDRKRLSVLEDGKG----------------NVQIVGLTEKPVTSVDELLELIESG 187

Query: 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLV 313
           N  R+ G+T  N+ SSRSHAI  II++                     + +  +G+L  +
Sbjct: 188 NSLRTTGSTGANDQSSRSHAILQIILKN-------------------KKLNKLLGKLSFI 228

Query: 314 DLAGSERQAKTGASG-QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQD 372
           DLAGSER A T     Q  KE ++IN SL  L   I AL   K  H+P+R SKLT++L+D
Sbjct: 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRD 287

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           S  GNSKTVM AT+ P++ + E T++TLRYA RVK
Sbjct: 288 SFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score =  238 bits (610), Expect = 5e-73
 Identities = 134/392 (34%), Positives = 189/392 (48%), Gaps = 74/392 (18%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           NVRV VRVRP    E D       +   + GI + +  A S                   
Sbjct: 1   NVRVVVRVRPFLDCEED-------SSSCVRGIDSDQGQAKS------------------- 34

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                 + ++NP        K + FD  +     Q DI++   +PIV  +LSG N T+FA
Sbjct: 35  ------VEIENP--RNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFA 86

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
           YG TG GKT TM G    P   G+IP + + +     K   +  F   +SY+EIYNE++ 
Sbjct: 87  YGSTGAGKTHTMLG---DPNEPGLIPRTLSDLLRMGRKQAWTGAFS--MSYYEIYNEKVY 141

Query: 197 DLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           DLL    K+               L ++E  D  + +  L++    +  + E+     +K
Sbjct: 142 DLLEPAKKE---------------LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASK 186

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+V AT +N+ SSRSHA+  I + T      +                   G+L+L+DL
Sbjct: 187 NRTVAATKLNDNSSRSHAVLRIKV-TQPASNIQLE-----------------GKLNLIDL 228

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSE   +TG  G RLKE++ IN SL  L  V+ AL  G    IPYR SKLTR+LQDSLG
Sbjct: 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLG 287

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           G S+ +M A + P    Y++T+STL +ASR K
Sbjct: 288 GGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score =  249 bits (636), Expect = 4e-70
 Identities = 140/341 (41%), Positives = 197/341 (57%), Gaps = 42/341 (12%)

Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV-- 154
           +TFTFD++ D  S Q DI+     P+V+  L+GFN ++FAYGQTG+GKT+TM G  N   
Sbjct: 132 QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLL 191

Query: 155 -----PELKGIIPNSFAHIFGHIAK-----ADESVKFLVRVSYFEIYNEEIRDLLSKNKD 204
                 + +G+ P  F  +F  I +     AD  +K+  R S+ EIYNE+I DLL     
Sbjct: 192 EEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLL----- 246

Query: 205 QCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAM 264
                    D     L+++E    GVYV++L+        D+ +++  G  NR  GAT++
Sbjct: 247 ---------DPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSI 297

Query: 265 NEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKT 324
           N  SSRSH++F+ ++E+              +  A+   S +  R++LVDLAGSERQ  T
Sbjct: 298 NAESSRSHSVFTCVVESRC------------KSVADGLSSFKTSRINLVDLAGSERQKLT 345

Query: 325 GASGQRLKEASKINLSLSTLGNVISALVD----GKCTHIPYRNSKLTRILQDSLGGNSKT 380
           GA+G RLKEA  IN SLS LGN+I+ L +    GK  HIPYR+S+LT +LQ+SLGGN+K 
Sbjct: 346 GAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405

Query: 381 VMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKD 421
            M   + P+     ET STLR+A R K I NKA VN+  +D
Sbjct: 406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446

Length = 1320

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score =  220 bits (563), Expect = 7e-66
 Identities = 119/393 (30%), Positives = 185/393 (47%), Gaps = 57/393 (14%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           + V+V++RVRPLSK E ++        +    I  + +     H P  +           
Sbjct: 1   DPVKVYLRVRPLSKDELES--------EDEGCIEVINSTTIQLHPPKGSAAR-------- 44

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                     K+      +    F+F  VF  N+ Q + +  TA P+V  +L G N  +F
Sbjct: 45  ----------KSERNGG-QKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLF 93

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
            YG T +GKT+TM+G    P   GI+P S   IF  I        + V VSY EIYN  I
Sbjct: 94  TYGVTNSGKTYTMQGS---PGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYI 144

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLL  +     + +         L ++E  +  +YV  L+    ++ ++  ++   G K
Sbjct: 145 YDLLEDSPSSTKKRQS--------LRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQK 196

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR V  T +N  SSRSH++F+I +  + G        +        +  + + +L LVDL
Sbjct: 197 NRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD--------KDQITVSQLSLVDL 248

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRIL 370
           AGSER ++T  +G+RLKEA  IN SL TLG  I  L +          +PYR+SKLT + 
Sbjct: 249 AGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308

Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYA 403
           Q+   G  K  M   V P + +Y+ET+  ++++
Sbjct: 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFS 341

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score =  151 bits (383), Expect = 2e-42
 Identities = 77/157 (49%), Positives = 99/157 (63%), Gaps = 14/157 (8%)

Query: 232 VKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTT 291
            ++ +  I     D+  +M  GN NR+  ATAMNE SSRSH++F I        GGK   
Sbjct: 44  KREGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIH------FGGKNAL 97

Query: 292 GENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL 351
                  A A    ++G+++LVDLAGSER   +GA G RL E + IN SLSTLGNVISAL
Sbjct: 98  -------ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISAL 150

Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGP 388
            +   +H+PYR SKLTR+LQDSLGGNS+T+M A + P
Sbjct: 151 AERD-SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 67.9 bits (166), Expect = 5e-13
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 114 IYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI 172
           ++ +   P++   L G+N  IFAYGQTG+GKT+TMEG     E  GIIP         +
Sbjct: 8   VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEG---KREGAGIIP-RTVTDVIDL 61

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 27/215 (12%)

Query: 431 ISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSD----- 485
           +S+ K++ EEA             E +L+ TE  +E  E + +E + +L++ +       
Sbjct: 167 VSKYKERKEEA-------------ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213

Query: 486 -HQSMVEKLELLQKKVLVGG--ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK 542
            +Q +  +L  L+  +L+    E   E  E++++L     +  E +++ EE  K+ I+E 
Sbjct: 214 RYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE-IEEL 272

Query: 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI 602
            +E  ++ E+   LQEE   L ++++++   +   +E  +    E   E+E   + + ++
Sbjct: 273 KSELEELREELEELQEELLELKEEIEELEGEISLLRERLE----ELENELEELEERLEEL 328

Query: 603 TKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGE 637
            ++    +  +++   T   EL    A   E   E
Sbjct: 329 KEKIEALKEELEE-RETLLEELEQLLAELEEAKEE 362

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 50/203 (24%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 394 EETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPN 453
           +  +  L  A  + K+  + R   +  +  L + ++E+ EL+++LEEA            
Sbjct: 219 KAELRELELALLLAKL-KELRKELEELEEELSRLEEELEELQEELEEAEK---------- 267

Query: 454 PEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEI 513
              E++E +  +E      +E   EL   + + + +  ++ LL++++      L E  E 
Sbjct: 268 ---EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324

Query: 514 QQQL---LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKV 570
            ++L   ++A  +ELE R+   EEL++ + E +  + ++EEK S+L EE E L + L++ 
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384

Query: 571 SSMLLAAKEERKDVQRENRKEIE 593
            + L A   E ++   E ++EIE
Sbjct: 385 LAELEAELAEIRNELEELKREIE 407

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQ 487
           Q+E+ EL+++LEEA      E      E EL+  E   E  E   +E + E++  +    
Sbjct: 792 QEELEELEEELEEA------ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 488 SMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERI 547
            + E+LE L+K++    E L E+ E  +   +    EL+  ++++EEL++ ++E ++E  
Sbjct: 846 ELEEELEELEKEL----EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901

Query: 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583
           +++E+   L+E  E L  KL+++   L   +EE ++
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 457 ELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKV------LVGGENLLEK 510
           E++E E  +E  E    E +  L   + + + + E+LE L+K++      +      L +
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 511 AEIQQQLLDAAAQELEHR----KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKK 566
            E + + L+    +L       + + EEL++ ++E + E  + E +   L+ + E L ++
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 567 LKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI 602
           LK +   L   + E   +  E     E      R+I
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRI 833

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 34/186 (18%), Positives = 80/186 (43%), Gaps = 9/186 (4%)

Query: 421 DALLIKYQKEISELKKKLEEAS--VPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAE 478
              + + +K + E+++ LEE +  +    EE     + ++ E E  +   E    E + E
Sbjct: 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316

Query: 479 LKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKN 538
           L+ A+     +  +++ L  ++    E L  + E +++  D   +E    K++ E+L+  
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEI----EELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372

Query: 539 IQEKDAERIDMEEKYSSLQEESEGLSKK---LKKVSSMLLAAKEERKDVQRENRKEIEGF 595
           ++E D E  +  ++    +E+ E L ++   LK+    L    +   +   +    I G 
Sbjct: 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432

Query: 596 LDNVRQ 601
              + +
Sbjct: 433 EAKINE 438

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 34/197 (17%)

Query: 418 DPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDA 477
           +  +  L K ++ +++L+ +L             P  + EL + E  V   E    E + 
Sbjct: 768 EELEEDLHKLEEALNDLEARL--------SHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

Query: 478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKE----- 532
           +L R   +        E L+K          E  E+Q+Q +D   Q     K+ E     
Sbjct: 820 KLNRLTLE-------KEYLEK----------EIQELQEQRIDLKEQIKSIEKEIENLNGK 862

Query: 533 -EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML--LAAKEERKDVQRENR 589
            EEL++ ++E +A   D+E +   L++E + L  +L+++   +  L A+ E+K  +    
Sbjct: 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922

Query: 590 KE-IEGFLDNVRQITKE 605
           K  +E   + + +I   
Sbjct: 923 KAKLEALEEELSEIEDP 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 33/190 (17%)

Query: 426 KYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSD 485
           K  +EISEL+K+LEE              E  L+E       ++ I+D  + E  R +  
Sbjct: 255 KLTEEISELEKRLEEI-------------EQLLEEL------NKKIKDLGEEEQLRVKEK 295

Query: 486 HQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAE 545
              +  ++  L++ +      L E AE +   L+A   E++    + EEL++ I+E+   
Sbjct: 296 IGELEAEIASLERSIAEKEREL-EDAEERLAKLEA---EIDKLLAEIEELEREIEEERKR 351

Query: 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR----------ENRKEIEGF 595
           R  + E+Y+ L+EE E L  +L++V       ++E KD +           E ++E++  
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411

Query: 596 LDNVRQITKE 605
            + ++++++E
Sbjct: 412 QEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 31/132 (23%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 455 EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQ 514
            P ++  E   E  E +E E   +L+    + +  +E+ E L  +     E L E+ E  
Sbjct: 464 SPHVETIEEDRERVEELEAEL-EDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDL 521

Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
           ++L+    + +E ++++ EEL++   E +AE  +  E  +  +EE+E   +++ +++S L
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581

Query: 575 LAAKEERKDVQR 586
              KE  + ++R
Sbjct: 582 AELKERIESLER 593

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 28/144 (19%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK 531
           E E   E ++A  +    +E+     ++ L   + L  + E  +Q  +   QE+E  +++
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRL---DALERELESLEQRRERLEQEIEELEEE 836

Query: 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKE 591
            EEL++ + E + E  ++E++   L+EE E L  + +++   L   +EE+++++    +E
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE----EE 892

Query: 592 IEGFLDNVRQITKEYSYQQAIIQK 615
           +      + ++ +E    +  +++
Sbjct: 893 LRELESELAELKEEIEKLRERLEE 916

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEE 533
           + + ELK  +++ +S+ + LE L+++        LE+ E Q + L    +EL   +++ E
Sbjct: 685 KLEEELKSLKNELRSLEDLLEELRRQ--------LEELERQLEELK---RELAALEEELE 733

Query: 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
           +L+  ++E + E  ++EE+   LQE  E L ++L+ +   L   KEE ++++ + +   E
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793

Query: 594 GFLD 597
              +
Sbjct: 794 ELEE 797

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 34/220 (15%)

Query: 421 DALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELK 480
           +A + K   EI EL++++EE      R +       E  E +  +E      +E D E  
Sbjct: 328 EAEIDKLLAEIEELEREIEEERK---RRDKLTE---EYAELKEELEDLRAELEEVDKEFA 381

Query: 481 RAQSDHQSMVEKLELLQKKV--LVGGENLL---------EKAEIQQQLLDAAAQ--ELEH 527
             + + +   EKLE L++++  L    + L         E A++   +    A+  ELE 
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441

Query: 528 RKQ-KEEELKK---NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583
            K+ K  E+KK    +++  A+    E++   L+EE + + K+L K+   L  A+ + + 
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501

Query: 584 VQRENR----------KEIEGFLDNVRQITK-EYSYQQAI 612
            +   R            I+G    V Q+      Y  AI
Sbjct: 502 SEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI 541

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 400  LRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELD 459
            L+ A   KK     +  +D   AL  +  +E  + ++   E  +    EE     E    
Sbjct: 1557 LKKAEEKKKAEEAKKAEEDKNMAL--RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614

Query: 460  ETEPCVEPSEVIEDETD----AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQ 515
              E  ++  E+ + E +     +LK+ +++ +   E+L+  +++  +      +KAE  +
Sbjct: 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674

Query: 516  QLLDAAAQELEHRKQKEEELKKNIQE-KDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
            +  + A +  E  K+  E LKK  +E K AE +  +E     + E    +++  K+ +  
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734

Query: 575  LAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
               + E    + E  K+ E     +  + KE   +   I+K
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/161 (21%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 457 ELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQ 516
           EL E E  +E  E        EL+  +   + +  +LE L++++    E L  +    ++
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL----EELKRELAALEE 730

Query: 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576
            L+     LE  +++ EEL++ ++E      ++EE+  SL+E    L ++++++     A
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 577 AKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFI 617
            +EE ++++ E  +E E  LD + +  +    ++  +++ I
Sbjct: 791 LQEELEELEEE-LEEAERRLDALERELESLEQRRERLEQEI 830

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGG---ENLLEKAEIQQQLLDAAAQELEHRK 529
           +E + E++  +S+ + + E+LE LQ+++L      E L  +  + ++ L+    ELE  +
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322

Query: 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589
           ++ EELK+ I+    E  + E     L++    L +  +++   L A  EE +++    R
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 590 KEIEGFLDNVRQITKEYSYQQAIIQ 614
           +E+      + +I  E    +  I+
Sbjct: 383 EELAELEAELAEIRNELEELKREIE 407

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 33/213 (15%)

Query: 422 ALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKR 481
            LL   ++E+ EL+++L+E                EL+E       S++ E     EL  
Sbjct: 579 RLLRTRKEELEELRERLKELK----------KKLKELEERL-----SQLEELLQSLELSE 623

Query: 482 AQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQE 541
           A+++ +   E+LE           + LEK  +Q +L +     LE  ++K EEL+  I+ 
Sbjct: 624 AENELEEAEEELE-----------SELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672

Query: 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSML--LAAKEERKDVQRENRKEIEGFLDNV 599
           +  +RI+ EE+     EE E L ++L+++   L  L  K    +   E  +  +  L+ +
Sbjct: 673 EL-QRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

Query: 600 RQ----ITKEYSYQQAIIQKFIPTKYLELMTQN 628
           ++    + K     + + +K         + +N
Sbjct: 732 KKELEKLEKALELLEELREKLGKAGLRADILRN 764

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 21/229 (9%)

Query: 394 EETISTLRYASRVKKICNKARVNQDPKDALLIKYQK---EISELKKKLEEASVPPPREEP 450
           E+ I  L+  S ++++  +    Q+    L  + ++   EIS L+++LEE        E 
Sbjct: 266 EKEIEELK--SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN---ELEE 320

Query: 451 TPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEK 510
                 EL E    ++      +    EL++  ++ +   E+LE     +L   E L E 
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA 380

Query: 511 AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKV 570
                + L     EL   + + EELK+ I+         EE+   L E  E L ++LK++
Sbjct: 381 LR---EELAELEAELAEIRNELEELKREIESL-------EERLERLSERLEDLKEELKEL 430

Query: 571 SSMLLAAKEERKDVQRENRK---EIEGFLDNVRQITKEYSYQQAIIQKF 616
            + L   + E +++  E  +   ++E   D ++++ +E +  Q  +Q+ 
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 42/254 (16%)

Query: 396 TISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPE 455
            +  LR     +++        +     L + ++E+ EL  +L+E              E
Sbjct: 228 ALLVLRLEELREEL--------EELQEELKEAEEELEELTAELQEL-------------E 266

Query: 456 PELDETEPCVEPSEVIEDETDA---------ELKRAQSDHQSMVEKLELLQKKVLVGGEN 506
            +L+E    +E SE+ E+  +          E+ R +   Q + E+L  L++++      
Sbjct: 267 EKLEELR--LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 507 LLE---KAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGL 563
           L E   K +   + L    ++LE  K++ E L+  ++E +AE  ++E +   L+E+ E L
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 564 SKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLE 623
                KV+ + L       +++R     +E   D   ++ +E    + +++K    +  E
Sbjct: 385 R---SKVAQLELQIASLNNEIER-LEARLERLEDRRERLQQE---IEELLKKLEEAELKE 437

Query: 624 LMTQNATWNEDIGE 637
           L  +     E++ E
Sbjct: 438 LQAELEELEEELEE 451

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 23/86 (26%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEE 533
           E + EL+  +++ Q + ++L  LQK+  +  +  LE  E +++ L+   +ELE ++Q+ E
Sbjct: 72  EFEKELRERRNELQKLEKRL--LQKEENL--DRKLELLEKREEELEKKEKELEQKQQELE 127

Query: 534 ELKKNIQEKDAERIDMEEKYSSLQEE 559
           + ++ ++E   E++   E+ S L  E
Sbjct: 128 KKEEELEELIEEQLQELERISGLTAE 153

Length = 520

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 490 VEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDM 549
           + K  +   +     E   E +E++QQL      EL+   +  EE    I E ++E  D+
Sbjct: 61  LLKAPVQSVRPQKLEELQGELSELKQQL-----SELQEELEDLEER---IAELESELEDL 112

Query: 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQ 609
           +E    L+E  + L ++L+ +   +    +E ++++++ R+E+E   + + ++ +     
Sbjct: 113 KEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRL 172

Query: 610 QAIIQK 615
           Q  IQ+
Sbjct: 173 QEAIQE 178

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 22/235 (9%)

Query: 392 NYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPT 451
             EE +  LR      +      + +      L     EIS L+++ +         E  
Sbjct: 264 ELEEKLEELRLEVSELE----EEIEE--LQKELYALANEISRLEQQKQILRERLANLERQ 317

Query: 452 PNP-EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEK 510
               E +L+E E  ++       E + +L+  + + +S+  +LE L+ ++    E L  +
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESR 373

Query: 511 AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKV 570
            E  ++ L+    ++   + +   L   I+  +A    +E++   LQ+E E L KKL++ 
Sbjct: 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433

Query: 571 -----------SSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQ 614
                          L   +E  +   E  +E+   L+   Q       + A +Q
Sbjct: 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 46/240 (19%), Positives = 107/240 (44%), Gaps = 7/240 (2%)

Query: 403 ASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPR-EEPTPNPEPELDET 461
            +R++    +           L + + EI EL+++LEEA       E      E ++++ 
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 462 EPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGG---ENLLEKAEIQQQLL 518
           +  ++      DE  AEL     +  ++ E+LE L++++       E+L E+ E   + +
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
           ++ A E+E  ++  EEL+  ++    ER  +EE  + L+ E E LS++L+++ S     +
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 579 EERKDVQREN---RKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDI 635
            E ++++ +       +EG    +  + +  S + ++  +       ++          +
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 41/197 (20%), Positives = 87/197 (44%), Gaps = 20/197 (10%)

Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQ 487
           +KEI +L+++ E+        E     E +L   E  +E  +    E +A ++  + D  
Sbjct: 722 EKEIEQLEQEEEKLK------ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775

Query: 488 SMVEKLELLQKKVLVGG----ENLLEKAEIQQQLLDAAAQELE----HRKQKEEELKKNI 539
            + E L  L+ ++        +  L K E +   ++A  +E+E        ++E L+K I
Sbjct: 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 540 QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ-RENRKEIEGFLDN 598
           QE   +RID++E+  S+++E E L+ K ++     L  + E  +   R+    +      
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEE-----LEEELEELEAALRDLESRLGDLKKE 890

Query: 599 VRQITKEYSYQQAIIQK 615
             ++  +    +  I++
Sbjct: 891 RDELEAQLRELERKIEE 907

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.3 bits (98), Expect = 0.002
 Identities = 30/150 (20%), Positives = 74/150 (49%), Gaps = 18/150 (12%)

Query: 471 IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAA--QELEHR 528
            E+E    L+ A+ + +++ ++  L  K+     E    + E +++L +     Q+LE R
Sbjct: 36  AEEEAKRILEEAKKEAEAIKKEALLEAKE-----EIHKLRNEFEKELRERRNELQKLEKR 90

Query: 529 -KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV--- 584
             QKEE L + ++  +    ++E+K   L+++ + L KK +++  ++    +E + +   
Sbjct: 91  LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150

Query: 585 -QRENRKEIEGFLDNVRQITKEYSYQQAII 613
              E ++ +   L+ V    +E  ++ A++
Sbjct: 151 TAEEAKEIL---LEKVE---EEARHEAAVL 174

Length = 520

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 2/165 (1%)

Query: 431 ISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMV 490
            S  K+K +E       E           E     E     + +   E  + +   +   
Sbjct: 165 GSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224

Query: 491 EKLELLQKKVLVGG--ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERID 548
           E L  L    L     + L E    +Q+ ++++ QELE  ++   ++ K  +E++ E+  
Sbjct: 225 ENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284

Query: 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
            EE+   L +E E L  +L K+    +  +E+ K+ ++E +K  +
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEK 329

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLE---KAEIQQQLLDAAAQELEHRKQ 530
           E   EL+R   + +  +E+LE L++++    E L       E  ++LL+      E  ++
Sbjct: 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEK 333

Query: 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
            EE+L+K   E +    +  E    L+E  + L ++L+++   L  A E  K ++   ++
Sbjct: 334 LEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE 393

Query: 591 EIE 593
             E
Sbjct: 394 LKE 396

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 30/222 (13%)

Query: 424 LIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVI----------ED 473
           LIK + EI  LKK+LE+       ++     E +LDE E   E +E++           +
Sbjct: 534 LIKLKGEIKSLKKELEKLE---ELKKKLAELEKKLDELEE--ELAELLKELEELGFESVE 588

Query: 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEE 533
           E +  LK  +  +   +E  +  ++      E   ++ +  ++ LD A +EL   +++ E
Sbjct: 589 ELEERLKELEPFYNEYLELKDAEKEL-----EREEKELKKLEEELDKAFEELAETEKRLE 643

Query: 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR------E 587
           EL+K ++E   E+   EE+Y  L+EE   LS++L  + + L   ++ R+++++      E
Sbjct: 644 ELRKELEE--LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 588 NRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNA 629
             +E E     + ++ K     + + +K    KY  L+ + A
Sbjct: 702 ELEEREKAKKELEKLEKALERVEELREKV--KKYKALLKERA 741

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	705
KOG4280|consensus	574		100.0
KOG0243|consensus	1041		100.0
KOG0245|consensus	1221		100.0
KOG0240|consensus	607		100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
KOG0241|consensus	1714		100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0242|consensus	675		100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
KOG0247|consensus	809		100.0
KOG0239|consensus	670		100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0244|consensus	913		100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0246|consensus	676		100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	97.88
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.6
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.57
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.28
KOG1029|consensus	1118		96.22
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.13
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	96.13
PHA02562	562	46 endonuclease subunit; Provisional	95.74
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	95.4
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.19
KOG0963|consensus	629		95.18
KOG0250|consensus	1074		95.09
KOG0995|consensus	581		95.07
PRK11637	428	AmiB activator; Provisional	94.94
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.92
KOG4360|consensus	596		94.91
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.86
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.68
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.67
PRK09039	343	hypothetical protein; Validated	94.65
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.65
PLN03188	1320	kinesin-12 family protein; Provisional	94.64
PHA02562	562	46 endonuclease subunit; Provisional	94.58
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.46
KOG2129|consensus	552		94.35
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.34
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.24
KOG0996|consensus	1293		94.22
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.2
KOG0933|consensus	1174		94.17
KOG0933|consensus	1174		94.05
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.04
KOG0804|consensus	493		93.98
PRK06893	229	DNA replication initiation factor; Validated	93.97
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.9
KOG0250|consensus	1074		93.83
PRK03918	880	chromosome segregation protein; Provisional	93.82
KOG0971|consensus	1243		93.76
KOG0980|consensus	980		93.75
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.73
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.69
PRK04863	1486	mukB cell division protein MukB; Provisional	93.66
KOG0980|consensus	980		93.64
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.52
KOG1029|consensus	1118		93.49
PRK09039	343	hypothetical protein; Validated	93.41
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.39
PRK02224	880	chromosome segregation protein; Provisional	93.19
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.18
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.18
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.07
KOG0996|consensus	1293		93.02
KOG0804|consensus	493		92.97
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.87
KOG0971|consensus	1243		92.87
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	92.86
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.85
KOG0995|consensus	581		92.81
KOG0994|consensus	1758		92.79
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.78
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.76
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.62
KOG0161|consensus	1930		92.58
KOG0161|consensus	1930		92.51
PRK06620	214	hypothetical protein; Validated	92.33
KOG0977|consensus	546		92.27
PRK14086	617	dnaA chromosomal replication initiation protein; P	92.23
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.22
KOG1853|consensus	333		92.2
COG2433	652	Uncharacterized conserved protein [Function unknow	92.14
KOG0982|consensus	502		92.1
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.05
COG5185	622	HEC1 Protein involved in chromosome segregation, i	91.85
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.82
PRK02224	880	chromosome segregation protein; Provisional	91.72
PRK10884	206	SH3 domain-containing protein; Provisional	91.54
PRK03918	880	chromosome segregation protein; Provisional	91.39
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.36
PRK12377	248	putative replication protein; Provisional	91.31
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.2
PRK10884	206	SH3 domain-containing protein; Provisional	91.09
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	91.09
KOG0612|consensus	1317		91.01
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.01
PRK09087	226	hypothetical protein; Validated	90.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.89
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.85
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.75
PRK05642	234	DNA replication initiation factor; Validated	90.73
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.67
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.61
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.49
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.29
PRK08084	235	DNA replication initiation factor; Provisional	90.29
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	90.27
KOG0999|consensus	772		90.25
PRK06526	254	transposase; Provisional	90.25
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.2
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.13
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.12
PRK07952	244	DNA replication protein DnaC; Validated	90.05
KOG4643|consensus	1195		89.85
KOG0994|consensus	1758		89.83
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.63
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	89.62
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.46
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.45
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	89.43
PRK08116	268	hypothetical protein; Validated	89.4
PRK14088	440	dnaA chromosomal replication initiation protein; P	89.31
KOG0999|consensus	772		89.22
KOG0964|consensus	1200		88.96
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.96
PRK12704	520	phosphodiesterase; Provisional	88.87
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	88.8
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.79
PRK04863	1486	mukB cell division protein MukB; Provisional	88.68
PRK00149	450	dnaA chromosomal replication initiation protein; R	88.59
KOG0977|consensus	546		88.55
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.48
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	88.31
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	88.05
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.04
COG4372	499	Uncharacterized protein conserved in bacteria with	88.03
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.93
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	87.92
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	87.73
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.72
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	87.66
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.64
KOG4674|consensus	1822		87.6
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.6
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	87.58
PRK14087	450	dnaA chromosomal replication initiation protein; P	87.43
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.41
COG0593	408	DnaA ATPase involved in DNA replication initiation	87.22
PRK08939	306	primosomal protein DnaI; Reviewed	87.2
KOG2391|consensus	365		87.18
PRK08727	233	hypothetical protein; Validated	87.04
PRK00411	394	cdc6 cell division control protein 6; Reviewed	86.99
KOG0946|consensus	970		86.96
KOG0243|consensus	1041		86.75
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.54
PRK08181	269	transposase; Validated	86.52
KOG0249|consensus	916		86.46
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	86.21
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	86.2
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	86.18
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	86.16
COG4372	499	Uncharacterized protein conserved in bacteria with	86.16
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	86.1
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	86.09
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	85.93
PRK08903	227	DnaA regulatory inactivator Hda; Validated	85.83
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.68
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.49
KOG4643|consensus	1195		85.36
KOG1937|consensus	521		85.36
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.32
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	85.13
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	85.0
COG1484	254	DnaC DNA replication protein [DNA replication, rec	84.92
PF15272	196	BBP1_C: Spindle pole body component BBP1, C-termin	84.87
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	84.7
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	84.7
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.52
PRK04778	569	septation ring formation regulator EzrA; Provision	84.38
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.36
KOG4809|consensus	654		84.32
KOG4809|consensus	654		84.24
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.05
KOG0976|consensus	1265		84.0
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	83.95
PLN02939	977	transferase, transferring glycosyl groups	83.94
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.78
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.75
KOG0964|consensus	1200		83.7
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	83.61
PF13245	76	AAA_19: Part of AAA domain	83.51
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.49
PRK00409	782	recombination and DNA strand exchange inhibitor pr	83.48
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	83.45
KOG4674|consensus	1822		83.41
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	83.39
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	83.35
PRK06835	329	DNA replication protein DnaC; Validated	83.18
KOG4603|consensus	201		83.14
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	82.85
KOG0989|consensus	346		82.84
KOG1962|consensus	216		82.78
PTZ00112	1164	origin recognition complex 1 protein; Provisional	82.64
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	82.61
COG2433	652	Uncharacterized conserved protein [Function unknow	82.57
PRK06921	266	hypothetical protein; Provisional	82.47
PRK01156	895	chromosome segregation protein; Provisional	82.46
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	82.36
PRK10436	462	hypothetical protein; Provisional	82.33
KOG0018|consensus	1141		82.31
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.17
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.05
KOG4673|consensus	961		81.91
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	81.9
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.68
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.5
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	81.5
PRK12422	445	chromosomal replication initiation protein; Provis	81.48
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	81.39
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	81.29
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	81.11
PF09403	126	FadA: Adhesion protein FadA; InterPro: IPR018543 F	80.78
TIGR02533	486	type_II_gspE general secretory pathway protein E.	80.61
KOG0976|consensus	1265		80.49
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.44
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	80.4
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	80.38
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	80.28
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	80.26

>KOG4280|consensus

Probab=100.00  E-value=2.5e-113  Score=949.72  Aligned_cols=550  Identities=50%  Similarity=0.728  Sum_probs=481.0

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      ...+|+|+|||||++..+...+...++.+++..+.+.+.+|.                                  ....
T Consensus         3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------------~~~~   48 (574)
T KOG4280|consen    3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPV----------------------------------AGIE   48 (574)
T ss_pred             cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCc----------------------------------cccc
Confidence            468999999999999999999999999999888888888773                                  2234


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      +++++|+||.||+++++|++||..++.|+|++||+||||||||||||||||||||+|.  +++.+|||||+|++||.+|+
T Consensus        49 ~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~  126 (574)
T KOG4280|consen   49 GKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHID  126 (574)
T ss_pred             CCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHH
Confidence            5577899999999999999999999999999999999999999999999999999998  38889999999999999999


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      ...+...|+|+|||+|||||.|+|||++.+...             +.++++|+.||||+||+++.|.|++++..+|..|
T Consensus       127 ~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~-------------l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G  193 (574)
T KOG4280|consen  127 ERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKG-------------LELREDPKCGVYVENLSEMDVESAEDAQQLLVVG  193 (574)
T ss_pred             hccccceEEEEeehHHHHhHHHHHHhCccCcCC-------------ceeeEcCCCceEecCcceeecCCHHHHHHHHHHH
Confidence            987777899999999999999999999886543             4559999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeec-CCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      .++|++++|.||..|||||+||+|+|++.. ..+|.              .+++.|+|||||||||||++++|++|+|+|
T Consensus       194 ~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~--------------~~~~~~rlnlvDLagsEr~~~tga~G~rlk  259 (574)
T KOG4280|consen  194 LANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGL--------------MSGRSSKLNLVDLAGSERQSKTGAEGERLK  259 (574)
T ss_pred             HhhcchhhccCCcccccceEEEEEEEEeecccCCCc--------------cccccceeeeeeccchhhhcccCccchhhh
Confidence            999999999999999999999999999944 23333              567889999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      ||++||+||++||+||+||++++..||||||||||+||||||||||+|+|||||||++++|+||++|||||+|||.|+|+
T Consensus       260 Ea~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk  339 (574)
T KOG4280|consen  260 EATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNK  339 (574)
T ss_pred             hhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC----------CCcCCC-CCCC-------CCcccchh-
Q psy11229        413 ARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPE----------PELDET-EPCV-------EPSEVIED-  473 (705)
Q Consensus       413 ~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~-------~~~~~~~~-  473 (705)
                      |.+|+||+++.++.|+++|+.|+.+|.................          ...... ....       +...+... 
T Consensus       340 ~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e  419 (574)
T KOG4280|consen  340 PVINEDPKDALLRELQEEIERLKKELDPGGSPGGTDRQEAESGSEENLLKAETVISLDPNEARVADLALETEELEKRLLE  419 (574)
T ss_pred             ccccCCcchhhHHHHHHHHHHHHHhhccccCcCCCCccccccccccchhhccccccccchhhccccccccccchhhhHHH
Confidence            9999999999999999999999999987654332110000000          000000 0000       00000101 


Q ss_pred             --hhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        474 --ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE  551 (705)
Q Consensus       474 --~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~  551 (705)
                        +....+...+.+...+..+...+.++...+++.  .+..++.+.++....++++.+++.+++..+++.     ..+..
T Consensus       420 ~~k~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-----~e~~~  492 (574)
T KOG4280|consen  420 LQKKNQELEDLRQENEFLARKRPDIESKQLVGGKN--PKLEEQQKLLERGRLELEEAKKREEELVQELEL-----PELLE  492 (574)
T ss_pred             HHHHhhhhhhccccchhhhhcccchhhhceecCCC--CchHHhhhcccccccchhhhhcChhhccCCccc-----ccccc
Confidence              112233445556667778888888888888877  888899999999989999988888888887766     66788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q psy11229        552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATW  631 (705)
Q Consensus       552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~w  631 (705)
                      .|..++++.+.+++++.+++.++.+.+.+..+...++.++.+++.+.++++.+++++..+++++|||.++...+..+..|
T Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~~~~~~  572 (574)
T KOG4280|consen  493 RYSSLQEEAESKSKKLSKLLLKLLAARQEIVDIASEHLREREALEEGIRELSKELKLLLLILDNFIPTELKRIIEDELSS  572 (574)
T ss_pred             ccccccccchhhHHHHHHHHHHHhhhhccccccchhhhHHHHhhhhhhhHHHHHHhhhhhhhhccCChhhhccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy11229        632 NE  633 (705)
Q Consensus       632 de  633 (705)
                      ++
T Consensus       573 ~~  574 (574)
T KOG4280|consen  573 DE  574 (574)
T ss_pred             cC
Confidence            75

>KOG0243|consensus

Probab=100.00  E-value=1.2e-96  Score=846.95  Aligned_cols=373  Identities=46%  Similarity=0.702  Sum_probs=330.1

Q ss_pred             ccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229         11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG   90 (705)
Q Consensus        11 ~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   90 (705)
                      ..+..-||+|+|||||++.+|....+..+|.++.....|.|...-                                  .
T Consensus        44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~----------------------------------~   89 (1041)
T KOG0243|consen   44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI----------------------------------A   89 (1041)
T ss_pred             CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccc----------------------------------c
Confidence            344568999999999999999999888888887655556665320                                  0


Q ss_pred             CCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC-----CCCCCCCchHHHH
Q psy11229         91 SAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN-----NVPELKGIIPNSF  165 (705)
Q Consensus        91 ~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~-----~~~~~~GIipr~~  165 (705)
                      + ..-.++|+||+||||.+.|.+||+.++.|+|..|+.|||||||||||||+||||||+|..     ..|...|||||++
T Consensus        90 s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal  168 (1041)
T KOG0243|consen   90 S-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRAL  168 (1041)
T ss_pred             c-ccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHH
Confidence            1 113689999999999999999999999999999999999999999999999999999942     3456679999999


Q ss_pred             HHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCcc--ccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCH
Q psy11229        166 AHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKD--QCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNA  243 (705)
Q Consensus       166 ~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~--~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~  243 (705)
                      .+||+.+...  +..|.|+|||+|+|||+|+|||++...  ..+.++..+..        -+..+||+|+||.++.|.++
T Consensus       169 ~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~--------~~~kggV~vkGlEEi~V~~A  238 (1041)
T KOG0243|consen  169 RQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTI--------VDGKGGVIVKGLEEIIVTNA  238 (1041)
T ss_pred             HHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcc--------cCCcCcEEEecceeeeecch
Confidence            9999999875  478999999999999999999998765  33333322211        15678999999999999999


Q ss_pred             HHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCCCcccc
Q psy11229        244 DDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQA  322 (705)
Q Consensus       244 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~  322 (705)
                      .|+.++|.+|...|++++|.||..|||||+||+|+|..... ..|+              .-++.|||+||||||||..+
T Consensus       239 ~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge--------------elvK~GKLNLVDLAGSENI~  304 (1041)
T KOG0243|consen  239 DEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE--------------ELVKIGKLNLVDLAGSENIS  304 (1041)
T ss_pred             hHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch--------------hhHhhcccceeecccccccc
Confidence            99999999999999999999999999999999999987662 2333              66889999999999999999


Q ss_pred             ccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHH
Q psy11229        323 KTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRY  402 (705)
Q Consensus       323 ~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrf  402 (705)
                      ++|+.+.|.+||+.||+||.+||+||.||+++. .|||||+|||||||||||||.+||+|||||||+..+++||++||.|
T Consensus       305 RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEY  383 (1041)
T KOG0243|consen  305 RSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEY  383 (1041)
T ss_pred             ccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHH
Confidence            999999999999999999999999999999965 8999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccCC-cchHHHHHHHHHHHHHHHHHhhcCC
Q psy11229        403 ASRVKKICNKARVNQD-PKDALLIKYQKEISELKKKLEEASV  443 (705)
Q Consensus       403 a~rak~I~n~~~~n~~-~~~~~l~~~~~ei~~Lk~~l~~~~~  443 (705)
                      |.|||+|+|+|.+|+. .+++++.+|-.||++||..|..+..
T Consensus       384 A~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaRe  425 (1041)
T KOG0243|consen  384 AHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAARE  425 (1041)
T ss_pred             HHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            9999999999999986 4789999999999999999977643

>KOG0245|consensus

Probab=100.00  E-value=2.3e-95  Score=819.92  Aligned_cols=367  Identities=43%  Similarity=0.701  Sum_probs=327.6

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      +..+|+|+||||||+.+|....+..+|.+.  ++.++|.+|++.                                   .
T Consensus         2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~--gn~ttii~~~~~-----------------------------------k   44 (1221)
T KOG0245|consen    2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQ--GNTTTIINPKGS-----------------------------------K   44 (1221)
T ss_pred             CCCceEEEEEeccchhhhhhcccceEEEec--CCceeeecCCCc-----------------------------------c
Confidence            367899999999999999988777777764  556777777321                                   1


Q ss_pred             CCCeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHH
Q psy11229         94 EPPKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFA  166 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~  166 (705)
                      . ...|+||+.|+..       ++|..||+.++.|+++.+|+|||+||||||||||||||||+|.. +|+..|||||.++
T Consensus        45 ~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~-~~~e~GIIPrlCE  122 (1221)
T KOG0245|consen   45 D-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQ-EPDEPGIIPRLCE  122 (1221)
T ss_pred             c-CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccC-CCCCCCchhHHHH
Confidence            1 2239999999654       68999999999999999999999999999999999999999987 4556699999999


Q ss_pred             HHHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccC-CCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHH
Q psy11229        167 HIFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD  244 (705)
Q Consensus       167 ~lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~-~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~  244 (705)
                      +||.+|... ..+..|.|.|||+|||||.|+|||+ |.++..|             .|||+|-.|+||.+|+.+.|.|..
T Consensus       123 eLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~L-------------RVREHP~lGPYVedLS~~aV~Sy~  189 (1221)
T KOG0245|consen  123 ELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGL-------------RVREHPILGPYVEDLSKLAVTSYA  189 (1221)
T ss_pred             HHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCc-------------eeeccCccChhHhHhhhcccccHH
Confidence            999999865 3468999999999999999999999 6555544             459999999999999999999999


Q ss_pred             HHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcccccc
Q psy11229        245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKT  324 (705)
Q Consensus       245 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t  324 (705)
                      |+..+|..|++.|++++|+||+.|||||+||+|.+.+........            -.+.++|+++|||||||||++.+
T Consensus       190 dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~------------l~sek~SKIsLVDLAGSERasst  257 (1221)
T KOG0245|consen  190 DIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG------------LDSEKVSKISLVDLAGSERASST  257 (1221)
T ss_pred             HHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC------------CcceeeeeeeEEeccCccccccc
Confidence            999999999999999999999999999999999998865221110            14678999999999999999999


Q ss_pred             CCccccHHHHHHhhhhHHHHHHHHHHHhcC------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHH
Q psy11229        325 GASGQRLKEASKINLSLSTLGNVISALVDG------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS  398 (705)
Q Consensus       325 ~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETls  398 (705)
                      |+.|+|||||.+||+||++||.||+||++.      ++.+||||||.||+||+++|||||||+|||+|||++.||+|||+
T Consensus       258 Ga~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLS  337 (1221)
T KOG0245|consen  258 GANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLS  337 (1221)
T ss_pred             CCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHH
Confidence            999999999999999999999999999872      34689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhcCCC
Q psy11229        399 TLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVP  444 (705)
Q Consensus       399 TLrfa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~~~~  444 (705)
                      |||||+|||+|+|+++||+||...+||+|++||.+||..|...+..
T Consensus       338 TLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~  383 (1221)
T KOG0245|consen  338 TLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLG  383 (1221)
T ss_pred             HHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999876543

>KOG0240|consensus

Probab=100.00  E-value=7e-90  Score=742.71  Aligned_cols=350  Identities=47%  Similarity=0.693  Sum_probs=316.8

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      ...+|+|+||+||++..|...+...++.+.+...+|.+...                                      .
T Consensus         5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~--------------------------------------~   46 (607)
T KOG0240|consen    5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT--------------------------------------K   46 (607)
T ss_pred             CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc--------------------------------------c
Confidence            56899999999999999988877766655443334443321                                      1


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      . .++|.||+||.|+++|.+||+.++.|+|++||.||||||||||||||||||||.|...+|...|||||++.+||++|.
T Consensus        47 ~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iy  125 (607)
T KOG0240|consen   47 E-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIY  125 (607)
T ss_pred             c-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHh
Confidence            2 278999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      ..+.+..|.|.|||||||+|+|+|||++.+..              +.|++|...++||+|+++..|.+.++++.++..|
T Consensus       126 s~~~n~efhVkVsy~EIYmEKi~DLL~~~k~n--------------lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g  191 (607)
T KOG0240|consen  126 SMEENLEFHVKVSYFEIYMEKIRDLLDPEKTN--------------LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEG  191 (607)
T ss_pred             cCcccceEEEEEEeehhhhhHHHHHhCcccCC--------------ceeecccCCCceecCceeEEecCHHHHHHHHhcc
Confidence            99889999999999999999999999976432              4569999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      ..+|+++.|.||.+|||||+||+|+|.+.....                .....|+|.||||||||+.+++|+.|.-+.|
T Consensus       192 ~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~----------------~~~~~gkLyLVDLaGSEkvsKtga~g~vleE  255 (607)
T KOG0240|consen  192 KSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED----------------KRKLSGKLYLVDLAGSEKVSKTGAEGAVLEE  255 (607)
T ss_pred             cccchhhhccccccccccceEEEEEEEeccccc----------------hhhccccEEEEEcccccccCCCCccchhHHH
Confidence            999999999999999999999999999876433                3467799999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA  413 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~  413 (705)
                      |.+||+||+|||+||+||++|..+|||||||||||||||+|||||+|.+|+|+||+..+..||.+||+|++|||.|+|.+
T Consensus       256 aK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v  335 (607)
T KOG0240|consen  256 AKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTV  335 (607)
T ss_pred             HhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchh
Confidence            99999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcc-hHHHHHHHHHHH
Q psy11229        414 RVNQDPK-DALLIKYQKEIS  432 (705)
Q Consensus       414 ~~n~~~~-~~~l~~~~~ei~  432 (705)
                      .+|.... +++.++|..+-.
T Consensus       336 ~~n~e~~~e~~~r~~e~~kd  355 (607)
T KOG0240|consen  336 WVNLELTAEEWKRKLEKKKD  355 (607)
T ss_pred             hhhhHhhHHHHHHHHHHHHh
Confidence            9998764 455566554433

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=6.7e-85  Score=755.75  Aligned_cols=316  Identities=44%  Similarity=0.710  Sum_probs=282.6

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC-------CCCCCCchHHHHHHHH
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN-------VPELKGIIPNSFAHIF  169 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~-------~~~~~GIipr~~~~lF  169 (705)
                      +.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|...       .....|||||++.+||
T Consensus       132 qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF  211 (1320)
T PLN03188        132 QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLF  211 (1320)
T ss_pred             cEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999643       2345799999999999


Q ss_pred             Hhhhhc-----CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHH
Q psy11229        170 GHIAKA-----DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD  244 (705)
Q Consensus       170 ~~i~~~-----~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~  244 (705)
                      ..|...     +....|.|+|||+|||||.|||||++...              .+.|++++.+|+||.||+++.|.|++
T Consensus       212 ~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k--------------~L~IRED~kgGv~VeGLTEv~V~S~E  277 (1320)
T PLN03188        212 ARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK--------------NLQIREDVKSGVYVENLTEEYVKTMK  277 (1320)
T ss_pred             HHHHhhhhhccccccceEEEEEEEeeecCcceeccccccC--------------CceEEEcCCCCeEeCCCeEEeCCCHH
Confidence            998642     23567999999999999999999987532              14569999999999999999999999


Q ss_pred             HHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcccccc
Q psy11229        245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKT  324 (705)
Q Consensus       245 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t  324 (705)
                      ++..+|..|..+|++++|.||..|||||+||+|+|++.......            ....+..|+|+|||||||||..++
T Consensus       278 D~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~d------------g~ss~r~SkLnLVDLAGSER~kkT  345 (1320)
T PLN03188        278 DVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVAD------------GLSSFKTSRINLVDLAGSERQKLT  345 (1320)
T ss_pred             HHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCC------------CCcceEEEEEEEEECCCchhcccc
Confidence            99999999999999999999999999999999999865421111            013467899999999999999999


Q ss_pred             CCccccHHHHHHhhhhHHHHHHHHHHHhc----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229        325 GASGQRLKEASKINLSLSTLGNVISALVD----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL  400 (705)
Q Consensus       325 ~~~g~rlkE~~~IN~SL~aL~~vI~aL~~----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL  400 (705)
                      ++.|.+++|+.+||+||++||+||.+|++    ++..||||||||||+||||+|||||+|+|||||||+..+++||++||
T Consensus       346 ga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTL  425 (1320)
T PLN03188        346 GAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTL  425 (1320)
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHH
Confidence            99999999999999999999999999985    45579999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccCCcch------HHHHHHHHHHHHHHHHH
Q psy11229        401 RYASRVKKICNKARVNQDPKD------ALLIKYQKEISELKKKL  438 (705)
Q Consensus       401 rfa~rak~I~n~~~~n~~~~~------~~l~~~~~ei~~Lk~~l  438 (705)
                      +||+||++|+|+|.+|....+      .++++|+.||.+|+..+
T Consensus       426 rFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~  469 (1320)
T PLN03188        426 RFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG  469 (1320)
T ss_pred             HHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999987543      46677788888887654

>KOG0241|consensus

Probab=100.00  E-value=4.1e-85  Score=723.27  Aligned_cols=368  Identities=45%  Similarity=0.693  Sum_probs=328.0

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      ..+|||+|||||++.+|.+....++|.|+..+..+...+|..                                .-.-..
T Consensus         3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~--------------------------------~~~~~k   50 (1714)
T KOG0241|consen    3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNH--------------------------------KIGESK   50 (1714)
T ss_pred             CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccc--------------------------------cccccC
Confidence            578999999999999999999999999986654443332210                                001124


Q ss_pred             CCeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229         95 PPKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH  167 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~  167 (705)
                      ++++|.||++|.+.       +.|+.||+.++.-+|+++|+|||+||||||||||||||||+|..+.|   |||||.+..
T Consensus        51 ~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Qp---GiIPrlc~~  127 (1714)
T KOG0241|consen   51 GPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQP---GIIPRLCES  127 (1714)
T ss_pred             CCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCC---CchhHHHHH
Confidence            58999999999764       68999999999999999999999999999999999999999998877   999999999


Q ss_pred             HHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229        168 IFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM  246 (705)
Q Consensus       168 lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~  246 (705)
                      ||..|... .+...|.|.|||+|||||++||||.|....            ..+.|+++.-.|.||.||+.+.|.|++|+
T Consensus       128 lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ss------------qtlkVrehsvlGp~vdGLS~laV~S~qdI  195 (1714)
T KOG0241|consen  128 LFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSS------------QTLKVREHSVLGPYVDGLSQLAVTSFQDI  195 (1714)
T ss_pred             HHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCc------------ceeEEeecccccccccchhhhhcccHHHH
Confidence            99999875 346789999999999999999999886543            34778999999999999999999999999


Q ss_pred             HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229        247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA  326 (705)
Q Consensus       247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~  326 (705)
                      ..+|..|+++|++++|+||..|||||+||.|.|.+.--....+.            ..-.+|+|.|||||||||.+++|+
T Consensus       196 d~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~------------SgeKvsklslVDLAgserasktga  263 (1714)
T KOG0241|consen  196 DSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGH------------SGEKVSKLSLVDLAGSERASKTGA  263 (1714)
T ss_pred             HHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCc------------chhheeeeeEEEeccccccccccc
Confidence            99999999999999999999999999999999987642211111            223579999999999999999999


Q ss_pred             ccccHHHHHHhhhhHHHHHHHHHHHhc-----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHH
Q psy11229        327 SGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLR  401 (705)
Q Consensus       327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~-----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLr  401 (705)
                      .|.|++|+++||+||++||.||+||++     |+.++||||||.||+||||+|||||+|+||+||||++.||+|||+|||
T Consensus       264 ~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLR  343 (1714)
T KOG0241|consen  264 AGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLR  343 (1714)
T ss_pred             hhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHH
Confidence            999999999999999999999999987     345799999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q psy11229        402 YASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEA  441 (705)
Q Consensus       402 fa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~  441 (705)
                      ||.|||+|+|.+.+|+||....++++++|++.|+.+|..+
T Consensus       344 YadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a  383 (1714)
T KOG0241|consen  344 YADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA  383 (1714)
T ss_pred             HHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999763

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=1.7e-83  Score=694.40  Aligned_cols=325  Identities=47%  Similarity=0.743  Sum_probs=286.5

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .+|+|+|||||++..|...+...++.+...+ .+.+..                                        .+
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-~~~~~~----------------------------------------~~   39 (337)
T cd01373           1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD-TLVWHS----------------------------------------HP   39 (337)
T ss_pred             CCeEEEEEcCcCChhhcccCCCeEEEEcCCC-cEEeeC----------------------------------------CC
Confidence            4799999999999999876666666554322 222211                                        12


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCC-----CCCCchHHHHHHHHH
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVP-----ELKGIIPNSFAHIFG  170 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~-----~~~GIipr~~~~lF~  170 (705)
                      ++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+     ...|||||++++||.
T Consensus        40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~  119 (337)
T cd01373          40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS  119 (337)
T ss_pred             CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999976533     357999999999999


Q ss_pred             hhhhc----CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229        171 HIAKA----DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM  246 (705)
Q Consensus       171 ~i~~~----~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~  246 (705)
                      .+...    .....|.|+|||+|||||+|||||++...              .+.+++++.+|++|.|++++.|.|++|+
T Consensus       120 ~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~  185 (337)
T cd01373         120 LIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR--------------NLKIREDIKKGVYVENLTEEYVSSYEDV  185 (337)
T ss_pred             HHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC--------------CceEEECCCCCEEeCCCEEEEeCCHHHH
Confidence            98654    23568999999999999999999986532              1456999999999999999999999999


Q ss_pred             HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229        247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA  326 (705)
Q Consensus       247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~  326 (705)
                      ..+|..|..+|++++|.+|..|||||+||+|.|.+.....+.              ...+.|+|+|||||||||..++++
T Consensus       186 ~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~--------------~~~~~s~l~~VDLAGSEr~~~~~~  251 (337)
T cd01373         186 YQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS--------------TNIRTSRLNLVDLAGSERQKDDGA  251 (337)
T ss_pred             HHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC--------------CcEEEEEEEEEECCCCCcccccCC
Confidence            999999999999999999999999999999999876532221              346679999999999999999999


Q ss_pred             ccccHHHHHHhhhhHHHHHHHHHHHhc---CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHH
Q psy11229        327 SGQRLKEASKINLSLSTLGNVISALVD---GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYA  403 (705)
Q Consensus       327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~---~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa  403 (705)
                      .|.+++|+..||+||++|++||.+|++   ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||
T Consensus       252 ~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa  331 (337)
T cd01373         252 EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFA  331 (337)
T ss_pred             ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHH
Confidence            999999999999999999999999975   34589999999999999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q psy11229        404 SRVKKI  409 (705)
Q Consensus       404 ~rak~I  409 (705)
                      .|||+|
T Consensus       332 ~rak~I  337 (337)
T cd01373         332 QRAKLI  337 (337)
T ss_pred             HHhhcC
Confidence            999987

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0242|consensus

Probab=100.00  E-value=1.5e-84  Score=746.89  Aligned_cols=359  Identities=45%  Similarity=0.707  Sum_probs=315.1

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .++|.|+|||||++++|...+....+.+..+...+....+.                               .+.   ..
T Consensus         5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------------------------~~~---~~   50 (675)
T KOG0242|consen    5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKS-------------------------------LPE---KS   50 (675)
T ss_pred             cceeEEEEEeCCCCccccccCCccceEecCCceeEeecccc-------------------------------ccc---cc
Confidence            46899999999999997555555545443222111111110                               000   01


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      .+..|.||+||+++++|++||+..++|+|++|+.||||||||||||||||||||.|...+|   ||||+++.+||+.|..
T Consensus        51 ~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~P---Gii~la~~dif~~I~~  127 (675)
T KOG0242|consen   51 KPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDP---GIIPLAMKDIFEKIDK  127 (675)
T ss_pred             cccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCC---CeeehHHHHHHHHHHh
Confidence            1578999999999999999999999999999999999999999999999999999999888   9999999999999998


Q ss_pred             cCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229        175 ADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN  254 (705)
Q Consensus       175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~  254 (705)
                      .. ...|.|.|||+|||||.|+|||+++...              +.|+||+.+|++|.||++..|.|++++..+|..|+
T Consensus       128 ~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~--------------L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~  192 (675)
T KOG0242|consen  128 SG-EREFSVRVSYLEIYNERIRDLLNPDGGD--------------LRLREDSEGGIVVPGLTEETVSSREELLELLQKGN  192 (675)
T ss_pred             cC-CceeEEEEEEEEEeccccccccCCCCCC--------------ceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhh
Confidence            76 8899999999999999999999987543              55699999999999999999999999999999999


Q ss_pred             ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229        255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA  334 (705)
Q Consensus       255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~  334 (705)
                      ++|+++.|.||..|||||+||+|.|++.....+                . +.|+|+|||||||||.++|++.|.|++||
T Consensus       193 ~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG  255 (675)
T KOG0242|consen  193 KNRTTGETNLNEQSSRSHAILRITVESRGREAS----------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEG  255 (675)
T ss_pred             ccCcccccccccccchhhheeeEEEEecccccc----------------c-hhheehhhhhhhhhhhhhhhccceecccc
Confidence            999999999999999999999999988653211                1 57899999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229        335 SKINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA  413 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~  413 (705)
                      ++||+||++||+||.+|.++ ...||||||||||||||++||||++|+|||||+|+..+|+||.+||+||+|||.|++++
T Consensus       256 ~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~  335 (675)
T KOG0242|consen  256 AHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKA  335 (675)
T ss_pred             chhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhccccc
Confidence            99999999999999999998 45689999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcchHHH-HHHHHHHHHHHHHHhhcC
Q psy11229        414 RVNQDPKDALL-IKYQKEISELKKKLEEAS  442 (705)
Q Consensus       414 ~~n~~~~~~~l-~~~~~ei~~Lk~~l~~~~  442 (705)
                      .+|....+..+ ..++.+|..|+.++....
T Consensus       336 ~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~  365 (675)
T KOG0242|consen  336 QVNVILSDKALLKYLQREIAELEAELERLK  365 (675)
T ss_pred             ccceecchhhhhHHHHHHHHHHHHHHHhhc
Confidence            99988776544 445699999999997754

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=8.3e-83  Score=689.32  Aligned_cols=336  Identities=44%  Similarity=0.709  Sum_probs=295.9

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|+|||||||+++.|...+...+|.+...  .+.+.+|.......                        +.+. .....+
T Consensus         1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~--~~v~~~~~~~~~~~------------------------~~~~-~~~~~~   53 (338)
T cd01370           1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD--RMLVFDPKDEEDAF------------------------RNLR-ARRNKE   53 (338)
T ss_pred             CeEEEEEcCCCChhhhhcCCceEEEEcCC--CEEEEcCCcccccc------------------------cchh-cccCCc
Confidence            69999999999999988888888888643  33344442100000                        0001 112346


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD  176 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~  176 (705)
                      +.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|...++   |||||++++||+.++...
T Consensus        54 ~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Giipr~~~~LF~~i~~~~  130 (338)
T cd01370          54 LKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDP---GLMVLTMKDLFDKIEERK  130 (338)
T ss_pred             eEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCC---chHHHHHHHHHHhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999987655   999999999999999887


Q ss_pred             CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229        177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN  256 (705)
Q Consensus       177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~  256 (705)
                      ....|.|+|||+|||||+|+|||++...              .+.++++++++++|.|++++.|.|++|++.+|..|.++
T Consensus       131 ~~~~~~v~vS~~EIyne~v~DLL~~~~~--------------~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~  196 (338)
T cd01370         131 DDKEFEVSLSYLEIYNETIRDLLSPSSG--------------PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRN  196 (338)
T ss_pred             cCceEEEEEEEEEEECCEEEECCCCCCC--------------CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhh
Confidence            7889999999999999999999987522              25569999999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229        257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK  336 (705)
Q Consensus       257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~  336 (705)
                      |++++|.+|..|||||+||+|+|.+.....+.             ......|+|+|||||||||..+++..|.+++|+..
T Consensus       197 R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~-------------~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~  263 (338)
T cd01370         197 RTQEPTEANATSSRSHAVLQITVRQKDRTASI-------------NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGAN  263 (338)
T ss_pred             cccccccccCccCcceEEEEEEEEEEecCCCC-------------CCcEEEEEEEEEECCCCccccccCCCCccccccch
Confidence            99999999999999999999999887532110             14567899999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        337 INLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       337 IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      ||+||++|++||.+|+.++  ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus       264 IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         264 INRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             hhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            9999999999999999876  389999999999999999999999999999999999999999999999999986

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=2.2e-81  Score=677.54  Aligned_cols=332  Identities=71%  Similarity=1.104  Sum_probs=305.9

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      ++|+|+|||||+++.|...++..++.+++.++.|.+.+|..                                  .....
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------~~~~~   46 (333)
T cd01371           1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKA----------------------------------DAKEP   46 (333)
T ss_pred             CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcc----------------------------------cccCC
Confidence            68999999999999999999999999999999999987731                                  11235


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      +++|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+...|||||++++||+.+...
T Consensus        47 ~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~  126 (333)
T cd01371          47 PKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA  126 (333)
T ss_pred             CceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999999999999886667899999999999999876


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      . ...|.|+|||+|||||+|+|||++.....             +.+++++.++++|.|++++.|.|++++..+|..|.+
T Consensus       127 ~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~-------------l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~  192 (333)
T cd01371         127 E-NVQFLVRVSYLEIYNEEVRDLLGKDQKKK-------------LELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNK  192 (333)
T ss_pred             c-CccEEEEEEEEEeeCCeeeeCCCCCCCCc-------------eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHh
Confidence            5 47899999999999999999998765332             456999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCC-CccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLG-GKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA  334 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~  334 (705)
                      +|.+++|.+|..|||||+||+|+|++..... +.              ..+..|+|+|||||||||..+++..|.+++|+
T Consensus       193 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~--------------~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~  258 (333)
T cd01371         193 NRSVGATNMNEDSSRSHSIFTITIECSEKGEDGE--------------NHIRVGKLNLVDLAGSERQSKTGATGDRLKEA  258 (333)
T ss_pred             hCccccccccCCCCCCcEEEEEEEEEEeccCCCC--------------CcEEEEEEEEEECCCCCcccccCCchhhhHhH
Confidence            9999999999999999999999998876432 12              45778999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      .+||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus       259 ~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I  333 (333)
T cd01371         259 TKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI  333 (333)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            999999999999999999988779999999999999999999999999999999999999999999999999986

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=8.3e-81  Score=675.18  Aligned_cols=340  Identities=35%  Similarity=0.584  Sum_probs=293.3

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .+|+|||||||++..|...+...+|.+. +++.|.+..|.......                          +.......
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~   53 (345)
T cd01368           1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARK--------------------------SERNGGQK   53 (345)
T ss_pred             CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccc--------------------------cccccCCC
Confidence            4799999999999999887778888764 45678777663210000                          01111335


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      ++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+   |||||++++||+.+.. 
T Consensus        54 ~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~---Gli~r~~~~lF~~~~~-  129 (345)
T cd01368          54 ETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDG---GILPRSLDVIFNSIGG-  129 (345)
T ss_pred             ceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHHh-
Confidence            789999999999999999999999999999999999999999999999999999987554   9999999999999865 


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                           |.|+|||+|||||+|+|||++.....        .....+.++++++++++|.|++++.|.|++|+..+|..|.+
T Consensus       130 -----~~v~~S~~EIyne~v~DLL~~~~~~~--------~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~  196 (345)
T cd01368         130 -----YSVFVSYVEIYNNYIYDLLEDSPSST--------KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQK  196 (345)
T ss_pred             -----eeEEEEEEEEeCCEeEeCCCCccccc--------cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhc
Confidence                 89999999999999999998765420        11223677999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.+++|.+|..|||||+||+|+|.+........        .......+..|+|+|||||||||..++++.|.+++|+.
T Consensus       197 ~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~--------~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~  268 (345)
T cd01368         197 NRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD--------VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAG  268 (345)
T ss_pred             cceeccccCcCCCCCceEEEEEEEEEeccCcccc--------cccCCCceEEEEEEEEecccccccccccccchhhhhhh
Confidence            9999999999999999999999998765321110        00112457789999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhcC-----CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        336 KINLSLSTLGNVISALVDG-----KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~~-----~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      .||+||++|++||.+|++.     +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus       269 ~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         269 NINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             hhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            9999999999999999873     45899999999999999999999999999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=3.5e-80  Score=673.86  Aligned_cols=341  Identities=46%  Similarity=0.733  Sum_probs=303.7

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      ++|+|+|||||++..|...+...++.++.  ..|.|.+|....                                .....
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~--------------------------------~~~~~   46 (356)
T cd01365           1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAAD--------------------------------ATRKK   46 (356)
T ss_pred             CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCccc--------------------------------ccccC
Confidence            58999999999999999988888888765  688888773100                                01234


Q ss_pred             CeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHH
Q psy11229         96 PKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHI  168 (705)
Q Consensus        96 ~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~l  168 (705)
                      .+.|.||+||+++       ++|++||+.++.|+|+++++|||+||||||||||||||||+|....+   |||||++++|
T Consensus        47 ~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~---Gli~r~~~~L  123 (356)
T cd01365          47 PKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEK---GIIPRLCEEL  123 (356)
T ss_pred             ceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCC---chHHHHHHHH
Confidence            6889999999999       99999999999999999999999999999999999999999987654   9999999999


Q ss_pred             HHhhhhcCC-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHH
Q psy11229        169 FGHIAKADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME  247 (705)
Q Consensus       169 F~~i~~~~~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~  247 (705)
                      |+.+..... ...|.|+|||+|||||+|||||++....           ...+.+++++..|++|.|++++.|.|++|+.
T Consensus       124 f~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~-----------~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~  192 (356)
T cd01365         124 FQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKN-----------KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ  192 (356)
T ss_pred             HHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccC-----------CcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence            999987654 5789999999999999999999876411           1125668999999999999999999999999


Q ss_pred             HHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCc
Q psy11229        248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGAS  327 (705)
Q Consensus       248 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~  327 (705)
                      .++..|.++|.+++|.+|..|||||+||+|.|.+.......            .......|+|+|||||||||..+++..
T Consensus       193 ~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~  260 (356)
T cd01365         193 NLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET------------DLTTEKVSKISLVDLAGSERASSTGAE  260 (356)
T ss_pred             HHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC------------CCCceEEEEEEeeeccccccccccccc
Confidence            99999999999999999999999999999999876532110            114567899999999999999999999


Q ss_pred             cccHHHHHHhhhhHHHHHHHHHHHhcC-------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229        328 GQRLKEASKINLSLSTLGNVISALVDG-------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL  400 (705)
Q Consensus       328 g~rlkE~~~IN~SL~aL~~vI~aL~~~-------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL  400 (705)
                      |.+++|+..||+||++|++||.+|+.+       +..||||||||||+||+|+||||++|+||+||||+..+++||++||
T Consensus       261 ~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL  340 (356)
T cd01365         261 GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTL  340 (356)
T ss_pred             chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHH
Confidence            999999999999999999999999864       3589999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccc
Q psy11229        401 RYASRVKKICNKARVN  416 (705)
Q Consensus       401 rfa~rak~I~n~~~~n  416 (705)
                      +||+|+++|+|.|++|
T Consensus       341 ~fa~~~~~i~~~~~~~  356 (356)
T cd01365         341 RYADRAKKIVNVAVVN  356 (356)
T ss_pred             HHHHHHhhccCccccC
Confidence            9999999999999876

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=1.2e-79  Score=669.02  Aligned_cols=341  Identities=45%  Similarity=0.681  Sum_probs=305.4

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .||+|+|||||+...|...++..++.++.....|.+.++..                                   ....
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----------------------------------~~~~   46 (352)
T cd01364           2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----------------------------------DKQS   46 (352)
T ss_pred             CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----------------------------------cccc
Confidence            48999999999999998888888888887777777765410                                   1123


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC--------CCCCCchHHHHHH
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV--------PELKGIIPNSFAH  167 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~--------~~~~GIipr~~~~  167 (705)
                      .+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....        ++..|||||++.+
T Consensus        47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~  126 (352)
T cd01364          47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ  126 (352)
T ss_pred             ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999998654        4568999999999


Q ss_pred             HHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec--CCCcEEEccceEEEcCCHHH
Q psy11229        168 IFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER--PDIGVYVKDLSAYIANNADD  245 (705)
Q Consensus       168 lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~gv~v~~l~~~~v~s~~e  245 (705)
                      ||+.+...  ...|.|+|||+|||||+|+|||++....           ...+.++++  +.+|++|.|++++.|.|++|
T Consensus       127 Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~-----------~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e  193 (352)
T cd01364         127 LFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSESDL-----------NKPLRIFDDTNNKGGVVIQGLEEITVNNANE  193 (352)
T ss_pred             HHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCcccc-----------CccceEEeccCcCCCEEeCCcEEEEeCCHHH
Confidence            99999875  5689999999999999999999876411           112455888  58999999999999999999


Q ss_pred             HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229        246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG  325 (705)
Q Consensus       246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~  325 (705)
                      +..++..|.++|.+++|.+|..|||||+||+|.|.+.......             ...+..|+|+|||||||||..+++
T Consensus       194 ~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~-------------~~~~~~s~l~~VDLAGsE~~~~~~  260 (352)
T cd01364         194 GLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISG-------------EELVKIGKLNLVDLAGSENIGRSG  260 (352)
T ss_pred             HHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCC-------------CccEEEEEEEEEECCCcccccccc
Confidence            9999999999999999999999999999999999876532111             134668999999999999999999


Q ss_pred             CccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHH
Q psy11229        326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASR  405 (705)
Q Consensus       326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~r  405 (705)
                      +.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|
T Consensus       261 ~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~  339 (352)
T cd01364         261 AENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHR  339 (352)
T ss_pred             CcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999865 7999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccCC
Q psy11229        406 VKKICNKARVNQD  418 (705)
Q Consensus       406 ak~I~n~~~~n~~  418 (705)
                      |++|+|.|.+|++
T Consensus       340 ~~~i~n~P~~n~~  352 (352)
T cd01364         340 AKNIKNKPEVNQK  352 (352)
T ss_pred             HhhccCccccCCC
Confidence            9999999999975

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=7.7e-79  Score=654.53  Aligned_cols=321  Identities=40%  Similarity=0.591  Sum_probs=287.9

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .+|+|+|||||+++.|...+...++.++.. ++|.+.+|.....                              ......
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~------------------------------~~~~~~   49 (322)
T cd01367           1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVD------------------------------LTKYIE   49 (322)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccc------------------------------cccccC
Confidence            489999999999999988888888888654 5788876631100                              001123


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      .+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+   |||||++++||+.++..
T Consensus        50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Glipr~~~~lf~~~~~~  126 (322)
T cd01367          50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQE---GLYALAARDIFRLLAQP  126 (322)
T ss_pred             CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcC---ccHHHHHHHHHHHHhcc
Confidence            578999999999999999999999999999999999999999999999999999987655   99999999999999875


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      .  ..|.|+|||+|||||.|+|||++..  .             +.+++++.++++|.|++++.|.|++|+..+|..|.+
T Consensus       127 ~--~~~~v~~S~~EIy~e~v~DLL~~~~--~-------------l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~  189 (322)
T cd01367         127 N--DDLGVTVSFFEIYGGKLFDLLNDRK--R-------------LSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNS  189 (322)
T ss_pred             c--cccEEEEEEEeeecCchhhhccCcc--c-------------eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhc
Confidence            4  6799999999999999999998732  1             456999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-CccccHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQRLKEA  334 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g~rlkE~  334 (705)
                      +|.+++|.+|..|||||+||+|.|.....                   ....|+|+|||||||||..+++ ..+++++|+
T Consensus       190 ~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~  250 (322)
T cd01367         190 LRTTGSTGANDQSSRSHAILQIILKNKKL-------------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEG  250 (322)
T ss_pred             ccccccCcCCCCcccceEEEEEEEEEecC-------------------CeeEEEEEEeecCCccccccccccchhhHHhH
Confidence            99999999999999999999999987542                   2457999999999999998876 578999999


Q ss_pred             HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      .+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus       251 ~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k  322 (322)
T cd01367         251 AEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK  322 (322)
T ss_pred             hHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            999999999999999999876 899999999999999999999999999999999999999999999999986

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=2.6e-78  Score=651.94  Aligned_cols=324  Identities=54%  Similarity=0.821  Sum_probs=296.3

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      ++|+|+|||||++..|...+...++.+... ..|.+.++                                       ..
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~---------------------------------------~~   41 (325)
T cd01369           2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGS---------------------------------------DD   41 (325)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCC---------------------------------------CC
Confidence            689999999999999977777777777543 45665433                                       12


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      .+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|....+...|||||++++||+.+...
T Consensus        42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~  121 (325)
T cd01369          42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM  121 (325)
T ss_pred             ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc
Confidence            57899999999999999999999999999999999999999999999999999999886667899999999999999888


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      .....|.|++||+|||||.|+|||++...              .+.+++++..|++|.|++++.|.|++|+..++..|.+
T Consensus       122 ~~~~~~~v~~S~~EIy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~  187 (325)
T cd01369         122 DENLEFHVKVSYLEIYMEKIRDLLDVSKD--------------NLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKS  187 (325)
T ss_pred             cCCceEEEEEEEEEEECCChhhcccCccC--------------CceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHh
Confidence            77788999999999999999999987632              1456899999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.+++|.+|..|||||+||+|.|.+.....                .....|+|+|||||||||..++++.|.+++|+.
T Consensus       188 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~  251 (325)
T cd01369         188 NRAVASTNMNEESSRSHSIFLITLKQENVET----------------GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAK  251 (325)
T ss_pred             hcccccCcCCCccccccEEEEEEEEEEecCC----------------CCEEEEEEEEEECCCCCcccccCCcchhHHHHH
Confidence            9999999999999999999999998765322                335689999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      .||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus       252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i  325 (325)
T cd01369         252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI  325 (325)
T ss_pred             HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            99999999999999999987789999999999999999999999999999999999999999999999999986

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=1.2e-77  Score=651.15  Aligned_cols=335  Identities=45%  Similarity=0.680  Sum_probs=297.4

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|+|+||+||++..|...+...++.+.+.+..+.+.+                                          +
T Consensus         2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------------------------------------~   39 (341)
T cd01372           2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------------------------------------D   39 (341)
T ss_pred             CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------------------------------------C
Confidence            7999999999999998888888888877666665532                                          4


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC---CCCCCchHHHHHHHHHhhh
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~~~~GIipr~~~~lF~~i~  173 (705)
                      +.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....   ....|||||++++||+.+.
T Consensus        40 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~  119 (341)
T cd01372          40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKID  119 (341)
T ss_pred             cEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999997532   4567999999999999999


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      .......|.|.|||+|||||.|+|||++....           ...+.+++++.++++|.|++++.|.|++|++.+|..|
T Consensus       120 ~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~-----------~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g  188 (341)
T cd01372         120 EKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE-----------KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQG  188 (341)
T ss_pred             hccccceEEEEEEEEEeECCeeecCCCCcccC-----------CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHH
Confidence            88767899999999999999999999876410           1125669999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|.+++|.+|..|||||+||+|.|.+.........      ...+.......|+|+||||||||+..++++.|.+++|
T Consensus       189 ~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~------~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e  262 (341)
T cd01372         189 SLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP------MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKE  262 (341)
T ss_pred             HHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc------ccccCCCceeeEEEEEEECCCCcccccccCchhHhHH
Confidence            9999999999999999999999999988764211000      0001124567899999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC  410 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~  410 (705)
                      +..||+||++|++||.+|+.+..  .|||||+||||+||+|+||||++|+||+||||+..+++||++||+||+||++|+
T Consensus       263 ~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         263 GISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999998653  799999999999999999999999999999999999999999999999999985

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=2.8e-77  Score=641.85  Aligned_cols=315  Identities=41%  Similarity=0.623  Sum_probs=280.2

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCC----CEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLN----GIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~----~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      +|+|+|||||+.+.|.  +...++.+...+    ..|.+.+|                                  ..  
T Consensus         1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~----------------------------------~~--   42 (319)
T cd01376           1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENP----------------------------------RN--   42 (319)
T ss_pred             CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCC----------------------------------CC--
Confidence            6999999999999883  334444443221    24555444                                  11  


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI  172 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i  172 (705)
                      ...++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+   |||||++++||+.+
T Consensus        43 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~---Glipr~~~~Lf~~~  119 (319)
T cd01376          43 RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEP---GLIPRTLSDLLRMG  119 (319)
T ss_pred             CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCcc---chHHHHHHHHHHHH
Confidence            123678999999999999999999999999999999999999999999999999999987655   99999999999988


Q ss_pred             hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      ...  ...|.|++||+|||||.|+|||++...              .+.++++++++++|.|++++.|.|++|+..++..
T Consensus       120 ~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~  183 (319)
T cd01376         120 RKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKK--------------ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIP  183 (319)
T ss_pred             hhc--cccceEEEEEEEEECCEeeEccCCCCC--------------CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHH
Confidence            765  367999999999999999999987522              1456999999999999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|.+++|.+|..|||||+||+|.|.+...                  .....|+|+|||||||||..+++..|.+++
T Consensus       184 ~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~  245 (319)
T cd01376         184 ASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS------------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLK  245 (319)
T ss_pred             HHhhhccccCcCCCccCCCeEEEEEEEEEECC------------------CceEEEEEEEEECCCCCcccccCCccchhh
Confidence            99999999999999999999999999987642                  225679999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      |+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||...+++|||+||+||+|||
T Consensus       246 e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~  319 (319)
T cd01376         246 ESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK  319 (319)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            99999999999999999999865 899999999999999999999999999999999999999999999999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=5.1e-77  Score=640.77  Aligned_cols=320  Identities=49%  Similarity=0.775  Sum_probs=288.2

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|+|+||+||+...|.. +...++.++.. +.|.+.+|                                       ...
T Consensus         1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-~~v~~~~~---------------------------------------~~~   39 (321)
T cd01374           1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-NTISLEES---------------------------------------TPG   39 (321)
T ss_pred             CeEEEEEcCcCCccccc-CCcceEEECCC-CEEEEcCC---------------------------------------CCC
Confidence            69999999999999873 45566666653 45555433                                       125


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD  176 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~  176 (705)
                      +.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|...++   |||||++++||..+....
T Consensus        40 ~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~---Gli~r~~~~lf~~~~~~~  116 (321)
T cd01374          40 QSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEP---GIIPLAVRDIFQRIQDTP  116 (321)
T ss_pred             eEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCC---chHHHHHHHHHHHHhccc
Confidence            78999999999999999999999999999999999999999999999999999987555   999999999999997765


Q ss_pred             CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229        177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN  256 (705)
Q Consensus       177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~  256 (705)
                       +..|.|+|||+|||||.|+|||++...              .+.+++++..|++|.|++++.|.|++++..+|..|.++
T Consensus       117 -~~~~~v~~S~~Eiy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~  181 (321)
T cd01374         117 -DREFLLRVSYLEIYNEKIKDLLSPSPQ--------------ELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKN  181 (321)
T ss_pred             -CceEEEEEEEEEEEcCEeEEccCCCCC--------------CceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhc
Confidence             678999999999999999999988742              24569999999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229        257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK  336 (705)
Q Consensus       257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~  336 (705)
                      |.+++|.+|..|||||+||+|+|.+......             ..+....|+|+|||||||||..+.+ .+.+++|+.+
T Consensus       182 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-------------~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~  247 (321)
T cd01374         182 RHVGETDFNERSSRSHTIFQLTIESRERGDS-------------ESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSF  247 (321)
T ss_pred             cccccCcCCCccccccEEEEEEEEEEecCCC-------------CCCcEEEEEEEEEECCCCCccccCC-CCccccccch
Confidence            9999999999999999999999988763321             1145778999999999999999998 8999999999


Q ss_pred             hhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        337 INLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       337 IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      ||+||++|++||.+|+.+. ..||||||||||+||+|+||||++|+||+||||...+++||++||+||+|+++|
T Consensus       248 iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i  321 (321)
T cd01374         248 INKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV  321 (321)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence            9999999999999999875 689999999999999999999999999999999999999999999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=8.4e-77  Score=641.77  Aligned_cols=334  Identities=43%  Similarity=0.660  Sum_probs=292.1

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|+|+||+||+...+..     .+.+++.+..+++..|......+                           . ......
T Consensus         1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~---------------------------~-~~~~~~   47 (334)
T cd01375           1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGV---------------------------V-NNQQED   47 (334)
T ss_pred             CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEeccccccccc---------------------------c-cCCcCc
Confidence            58999999999985432     46677778888887764211100                           0 012246


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD  176 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~  176 (705)
                      +.|.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|........|||||++.+||..++...
T Consensus        48 ~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~  126 (334)
T cd01375          48 FSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA  126 (334)
T ss_pred             eEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc
Confidence            78999999999 99999999999999999999999999999999999999999987655567999999999999998764


Q ss_pred             CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229        177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN  256 (705)
Q Consensus       177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~  256 (705)
                       +..|.|++||+|||||+|+|||++....        ......+.+++++.++++|.|++++.|.+++|++.++..|..+
T Consensus       127 -~~~~~v~~S~~Eiy~e~v~DLL~~~~~~--------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~  197 (334)
T cd01375         127 -TKTYTVHVSYLEIYNEQLYDLLGDTPEA--------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETN  197 (334)
T ss_pred             -CcceEEEEEEEEEECCEeecCCCCCccc--------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhh
Confidence             6689999999999999999999877432        0112336779999999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229        257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK  336 (705)
Q Consensus       257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~  336 (705)
                      |.+++|.+|..|||||+||+|+|.+.....+.              ..+..|+|+|||||||||..++++.+.+++|+..
T Consensus       198 R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~--------------~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~  263 (334)
T cd01375         198 RTIAETSMNQASSRSHCIFTIHLESRSREAGS--------------EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKY  263 (334)
T ss_pred             cccccCcCcCCcCcCeEEEEEEEEEEecCCCC--------------CceEEEEEEEEECCCCCccccccCchhhhhhhhh
Confidence            99999999999999999999999986432221              4567899999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       337 IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      ||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||||+..+++|||+||+||+|++
T Consensus       264 iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         264 INKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             hhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            99999999999999998776899999999999999999999999999999999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>KOG0247|consensus

Probab=100.00  E-value=2.6e-75  Score=643.17  Aligned_cols=357  Identities=34%  Similarity=0.533  Sum_probs=297.1

Q ss_pred             hhcccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccC
Q psy11229          8 EVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKN   87 (705)
Q Consensus         8 ~~~~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   87 (705)
                      +.+.....+.|.||||+||+...-.+.            +++.|.|..+.....|......                 ++
T Consensus        23 ~~~S~~~~d~v~v~~rvrP~~~~~~~~------------g~l~v~n~~tivL~~P~d~~~~-----------------~~   73 (809)
T KOG0247|consen   23 KGASCESKDPVLVVCRVRPLSDASEDE------------GCLRVINEETIVLETPEDSFAR-----------------RS   73 (809)
T ss_pred             cccchhhhcchheeEeecCCCCCcccc------------ceEEEeccceeEeeCcHHHHhh-----------------hc
Confidence            444556679999999999998632222            2333333333222222111100                 00


Q ss_pred             CCCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229         88 PAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH  167 (705)
Q Consensus        88 ~~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~  167 (705)
                        -++....+.|.|.+||+|+++|.+||+.++.|+|.+++.|.|+.+|+||.|||||||||+|+...+   ||+||+++-
T Consensus        74 --~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~---GIlPR~Ld~  148 (809)
T KOG0247|consen   74 --VNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRP---GILPRALDV  148 (809)
T ss_pred             --cCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCC---CchHHHHHH
Confidence              112345789999999999999999999999999999999999999999999999999999987766   999999999


Q ss_pred             HHHhhhh----------------------------------------------------------------cCCCceEEE
Q psy11229        168 IFGHIAK----------------------------------------------------------------ADESVKFLV  183 (705)
Q Consensus       168 lF~~i~~----------------------------------------------------------------~~~~~~~~V  183 (705)
                      ||+.|..                                                                .+.+..|.|
T Consensus       149 iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV  228 (809)
T KOG0247|consen  149 IFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSV  228 (809)
T ss_pred             HHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEE
Confidence            9988742                                                                013567999


Q ss_pred             EEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCcccccc
Q psy11229        184 RVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATA  263 (705)
Q Consensus       184 ~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~  263 (705)
                      +|||+|||||.|||||.+.+.....-        ....+++|.++.+||+|+++|.|.|.+|++++|..|.++|++++|.
T Consensus       229 ~VSf~EIYN~~iYDLLe~~s~q~~~~--------~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~  300 (809)
T KOG0247|consen  229 FVSFVEIYNNYIYDLLEDASFQGKLQ--------KLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTK  300 (809)
T ss_pred             EeeHHHHHHHHHHHhhccccccchhh--------hhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhhee
Confidence            99999999999999998765432111        0234589999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHHH
Q psy11229        264 MNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLST  343 (705)
Q Consensus       264 ~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~a  343 (705)
                      +|..|||||+||+|.|-+.....+              ...+++|.|.|||||||||..+|+.+|.||+||++||.||++
T Consensus       301 lN~~SSRSHsVFtIkl~q~~~~~~--------------s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmT  366 (809)
T KOG0247|consen  301 LNANSSRSHSVFTIKLVQAPRSQD--------------SNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMT  366 (809)
T ss_pred             ccccccccceeEEEEeeecccccc--------------cCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHH
Confidence            999999999999999977653311              256889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC----CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCc
Q psy11229        344 LGNVISALVDG----KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDP  419 (705)
Q Consensus       344 L~~vI~aL~~~----~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~  419 (705)
                      ||.||.+|...    ...+|||||||||++++.+|.|.++.+||.||+|.+.+|+|+|+.|+||..+..|.+...++..+
T Consensus       367 Lg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~  446 (809)
T KOG0247|consen  367 LRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ  446 (809)
T ss_pred             HHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence            99999999763    23689999999999999999999999999999999999999999999999999998888776554


Q ss_pred             c
Q psy11229        420 K  420 (705)
Q Consensus       420 ~  420 (705)
                      .
T Consensus       447 ~  447 (809)
T KOG0247|consen  447 P  447 (809)
T ss_pred             C
Confidence            3

>KOG0239|consensus

Probab=100.00  E-value=1.1e-76  Score=679.23  Aligned_cols=333  Identities=44%  Similarity=0.667  Sum_probs=292.2

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .+||||||||||+.+.|.......++..+.. +.+.+..|.                                  .....
T Consensus       313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~  357 (670)
T KOG0239|consen  313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPD----------------------------------KGDKL  357 (670)
T ss_pred             hcCceEEEEecCCCccccccccccccccCCc-ceeEeecCC----------------------------------CCCCC
Confidence            5999999999999999876533333332222 345555442                                  22122


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      .++.|.||+||+|.++|++||.++ .|+|.++|+|||+||||||||||||||||.|+  .|+..|||||++.+||..+..
T Consensus       358 ~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~  434 (670)
T KOG0239|consen  358 EPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITS  434 (670)
T ss_pred             ccccceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHh
Confidence            234799999999999999999886 89999999999999999999999999999995  344569999999999999998


Q ss_pred             cCCCceEEEEEEEEEEEcCeeeeccCCCc-cccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        175 ADESVKFLVRVSYFEIYNEEIRDLLSKNK-DQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~-~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      ...+|.|.+.+||+|||||.|+|||++.. ..             .+.|+.+++++.+|.+++.+.|.+.+++..+|..|
T Consensus       435 ~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~-------------k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g  501 (670)
T KOG0239|consen  435 LKSGWKYDKTVSMLEIYNEAIRDLLSDESYVG-------------KLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIG  501 (670)
T ss_pred             hccCceEEeeeehhHHHHHHHHHhcccccccc-------------ceeEEEcCCCceecccceEEecCCHHHHHHHHHHh
Confidence            88899999999999999999999998874 22             24568999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      ..+|++++|.+|.+|||||+||+|+|.......                +....|.|+|||||||||.++++++|+|++|
T Consensus       502 ~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t----------------~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE  565 (670)
T KOG0239|consen  502 LSNRSVASTASNERSSRSHLVFRVRIRGINELT----------------GIRVTGVLNLVDLAGSERVSKSGVTGERLKE  565 (670)
T ss_pred             hccccccccccchhhhccceEEEEEEeccccCc----------------ccccccceeEeecccCcccCcCCCchhhhHH
Confidence            999999999999999999999999997664322                4456789999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA  413 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~  413 (705)
                      +.+||+||++||+||.||+.. ..||||||||||+||||||||++||+|+++|||...++.||+++|+||.|++.+...+
T Consensus       566 ~Q~INkSLS~LgdVi~AL~~k-~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~  644 (670)
T KOG0239|consen  566 AQNINKSLSALGDVISALASK-RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGS  644 (670)
T ss_pred             HHHhchhhhhhHHHHHHHhhc-CCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccc
Confidence            999999999999999999984 5899999999999999999999999999999999999999999999999999987666


Q ss_pred             cc
Q psy11229        414 RV  415 (705)
Q Consensus       414 ~~  415 (705)
                      ..
T Consensus       645 a~  646 (670)
T KOG0239|consen  645 AR  646 (670)
T ss_pred             cc
Confidence            54

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=1.8e-74  Score=623.27  Aligned_cols=326  Identities=46%  Similarity=0.717  Sum_probs=289.7

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCC-CEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLN-GIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~-~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      .++|+|+||+||+...|. .....++.+...+ ..|.+.++                                      .
T Consensus         1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------------------------------------~   41 (329)
T cd01366           1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------------------------------------T   41 (329)
T ss_pred             CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------------------------------------C
Confidence            378999999999999986 3344555555443 44444322                                      1


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      ...+.|.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+|....+   |||||++++||..+.
T Consensus        42 ~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~---Gli~r~~~~lf~~~~  117 (329)
T cd01366          42 GKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENP---GIIPRALEQLFNTAE  117 (329)
T ss_pred             CCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCC---CcHHHHHHHHHHHHH
Confidence            235789999999999999999998 5899999999999999999999999999999987655   999999999999998


Q ss_pred             hcCC-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        174 KADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       174 ~~~~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      ...+ +..|.|.+||+|||||+|+|||++...           ....+.+++++.++++|.|++++.|.|++|+..++..
T Consensus       118 ~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-----------~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~  186 (329)
T cd01366         118 ELKEKGWSYTITASMLEIYNETIRDLLATKPA-----------PKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNL  186 (329)
T ss_pred             hhhccCceEEEEEEEEEEECCEeEECCCCCcC-----------CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHH
Confidence            7654 688999999999999999999987631           1122566999999999999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|.+++|.+|..|||||+||+|+|.+.....                +....|+|+||||||||+..++++.+.+++
T Consensus       187 ~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~----------------~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~  250 (329)
T cd01366         187 GSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT----------------GEQTRGKLNLVDLAGSERLKKSGATGDRLK  250 (329)
T ss_pred             HHhhcccccccccCCCCCccEEEEEEEEEEcCCC----------------CcEEEEEEEEEECCCCcccccccccchhhH
Confidence            9999999999999999999999999998765332                346789999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN  411 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n  411 (705)
                      |+..||+||++|++||.+|+.+. .|||||+||||+||+|+||||++|+||+||||...+++||++||+||+|+++|++
T Consensus       251 e~~~in~Sl~~L~~vl~~l~~~~-~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~  328 (329)
T cd01366         251 EAQAINKSLSALGDVISALRSKD-SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL  328 (329)
T ss_pred             hHhhhhhHHHHHHHHHHHHhcCC-CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999999874 8999999999999999999999999999999999999999999999999999976

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=1.5e-73  Score=617.73  Aligned_cols=333  Identities=55%  Similarity=0.833  Sum_probs=301.0

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCC-EEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNG-IITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~-~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      +|+|+|||||+...|...+...++.+...++ .|.+.+++                                    ....
T Consensus         1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------------------------------------~~~~   44 (335)
T smart00129        1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------------------------------------NRKE   44 (335)
T ss_pred             CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------------------------------------CCCC
Confidence            6999999999999998888888888865543 56655441                                    1234


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      .+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+...+   ||||+++++||..+...
T Consensus        45 ~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~  121 (335)
T smart00129       45 EKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSP---GIIPRALKDLFEKIDKL  121 (335)
T ss_pred             CeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCC---CHHHHHHHHHHHHhhhc
Confidence            688999999999999999999999999999999999999999999999999999986654   99999999999999877


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      .+...|.|+|||+|||+|.|+|||++...              .+.+++++.+++++.|++++.|.|++|+..++..|..
T Consensus       122 ~~~~~~~v~~S~~ei~~e~v~DLL~~~~~--------------~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~  187 (335)
T smart00129      122 EEGWQFQVKVSYLEIYNEKIRDLLNPSPK--------------KLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNK  187 (335)
T ss_pred             ccCceEEEEEEEEEEECCEEEECcCCCCC--------------CcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence            66789999999999999999999987532              2456899999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.+++|.+|..|||||+||+|+|.+.......              .....|+|+|||||||||..+.++.|.+++|+.
T Consensus       188 ~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~--------------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~  253 (335)
T smart00129      188 NRTVAATKMNEESSRSHAVFTITVESKIKNSSS--------------GSGKASKLNLVDLAGSERASKTGAEGDRLKEAG  253 (335)
T ss_pred             ccccccCCCCCCCCcceEEEEEEEEEEecCCCC--------------CCEEEEEEEEEECCCCCccccccChhHHHHhhc
Confidence            999999999999999999999999976322111              456789999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229        336 KINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR  414 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~  414 (705)
                      .||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||||...+|+||++||+||+++++|+|+|+
T Consensus       254 ~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~  333 (335)
T smart00129      254 NINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI  333 (335)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence            9999999999999999985 567999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q psy11229        415 VN  416 (705)
Q Consensus       415 ~n  416 (705)
                      +|
T Consensus       334 ~~  335 (335)
T smart00129      334 VN  335 (335)
T ss_pred             cC
Confidence            75

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=1.9e-71  Score=599.67  Aligned_cols=326  Identities=54%  Similarity=0.808  Sum_probs=290.5

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|+|+||+||+...| ..+...++.++.. +.|.+.+|..                                  .....+
T Consensus         1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~----------------------------------~~~~~~   44 (328)
T cd00106           1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKD----------------------------------GRKAGP   44 (328)
T ss_pred             CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCcc----------------------------------ccCcCc
Confidence            699999999999887 3455677777654 5677776621                                  112346


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD  176 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~  176 (705)
                      +.|.||+||+++++|++||+.++.|+|++++.|+|+||||||+|||||||||+|....+   ||||+++++||..+....
T Consensus        45 ~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~~  121 (328)
T cd00106          45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDP---GIIPRALEDLFNLIDERK  121 (328)
T ss_pred             eEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999999999999999999999999999999999987655   999999999999998764


Q ss_pred             C-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        177 E-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       177 ~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      . ...|.|++||+|||+|+|+|||++...            ...+.+++++.++++|.|++++.|.|++|+..++..|.+
T Consensus       122 ~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~  189 (328)
T cd00106         122 EKNKSFSVSVSYLEIYNEKVYDLLSPEPP------------SKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLK  189 (328)
T ss_pred             ccCceEEEEEEEEEEECCEeEECCCCCCC------------CCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHh
Confidence            3 578999999999999999999988621            112566999999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.+++|.+|..|||||+||+|+|.+.......              .....|+|+||||||||+..+++..+.+++|+.
T Consensus       190 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--------------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~  255 (328)
T cd00106         190 NRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--------------RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAK  255 (328)
T ss_pred             hcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC--------------ccEEEEEEEEEECCCCCcccccCCchhhhHhHH
Confidence            999999999999999999999999987643221              136789999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        336 KINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      .||+||++|++||.+|+.+. ..|||||+||||+||+|+|||+++|+||+||+|...+++||++||+||+|||
T Consensus       256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~  328 (328)
T cd00106         256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK  328 (328)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            99999999999999999876 5899999999999999999999999999999999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0244|consensus

Probab=100.00  E-value=2.5e-73  Score=645.04  Aligned_cols=348  Identities=41%  Similarity=0.629  Sum_probs=313.7

Q ss_pred             cCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCCeeEeece
Q psy11229         24 VRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDT  103 (705)
Q Consensus        24 vRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~FD~  103 (705)
                      |||+...|...|+..|+.+.+...+|.+..                                          ..+|+||+
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~------------------------------------------~~s~t~d~   38 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK------------------------------------------DASFTYDK   38 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeecC------------------------------------------Ccceeeee
Confidence            799999999999999998877777666642                                          36799999


Q ss_pred             eeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCC-CCchHHHHHHHHHhhhhcCCCceEE
Q psy11229        104 VFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPEL-KGIIPNSFAHIFGHIAKADESVKFL  182 (705)
Q Consensus       104 Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~-~GIipr~~~~lF~~i~~~~~~~~~~  182 (705)
                      ||+..+.|.++|+.++.|+++.++.|||+|++|||||||||||||.+....... .|+|||++.+||..+..... ..|.
T Consensus        39 v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~  117 (913)
T KOG0244|consen   39 VFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFR  117 (913)
T ss_pred             eccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-ccee
Confidence            999999999999999999999999999999999999999999999887433333 49999999999999998763 7899


Q ss_pred             EEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCccccc
Q psy11229        183 VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGAT  262 (705)
Q Consensus       183 V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T  262 (705)
                      |.|||+|||++.|+|||.|.....            .+.+++ +.+++.+.|+++..|.+..++...|..|.-.|++++|
T Consensus       118 i~vs~vely~e~v~dl~~~~~~~~------------~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasT  184 (913)
T KOG0244|consen  118 ITVSFVELYNEEVLDLLKPSRLKA------------NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVAST  184 (913)
T ss_pred             eeeeeeeccchhhhhhcChhhhhh------------ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            999999999999999998543221            134466 7788999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHH
Q psy11229        263 AMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLS  342 (705)
Q Consensus       263 ~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~  342 (705)
                      +||..|||||+||+|.+++......               .....+||+|||||||||.++|+++|+|++||.+||.+|+
T Consensus       185 nMN~qssRshAifti~lkq~kk~~~---------------~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL  249 (913)
T KOG0244|consen  185 NMNAQSSRSHAIFTITLKQRKKLSK---------------RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLL  249 (913)
T ss_pred             hcchhhhhhhHHHHHHHHHHHHhhc---------------cchhhhhhheeeccccccccccccchhhhhhccCcchHHH
Confidence            9999999999999999877543221               2345689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCcch
Q psy11229        343 TLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKD  421 (705)
Q Consensus       343 aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~~~  421 (705)
                      +|||||+||.+.+ ..|||||||||||||||+||||+.|+||+||||++.|..||++||+||.||++|+|+|.+|.||..
T Consensus       250 ~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~  329 (913)
T KOG0244|consen  250 ALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKS  329 (913)
T ss_pred             HHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHH
Confidence            9999999998754 369999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q psy11229        422 ALLIKYQKEISELKKKLEEAS  442 (705)
Q Consensus       422 ~~l~~~~~ei~~Lk~~l~~~~  442 (705)
                      ..+..++.+|+.|+..|....
T Consensus       330 ~~~~~lK~ql~~l~~ell~~~  350 (913)
T KOG0244|consen  330 FEMLKLKAQLEPLQVELLSKA  350 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999987654

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=3.8e-72  Score=606.69  Aligned_cols=330  Identities=48%  Similarity=0.759  Sum_probs=281.5

Q ss_pred             EcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCCeeEeec
Q psy11229         23 RVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFD  102 (705)
Q Consensus        23 RvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~FD  102 (705)
                      ||||++..|...+...++.+............                                  ..........|.||
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~f~FD   46 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSV----------------------------------NSNNSQKEKSFRFD   46 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEEEEEET----------------------------------TEEETTEEEEEEES
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCccccccccc----------------------------------cccCCCCceEEEcC
Confidence            99999999999988887776531111111100                                  00112346899999


Q ss_pred             eeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcCCC--ce
Q psy11229        103 TVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADES--VK  180 (705)
Q Consensus       103 ~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~~~--~~  180 (705)
                      +||+++++|++||+.++.|+|+++++|||+||||||+|||||||||+|. ..+...|||||++++||..+......  ..
T Consensus        47 ~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~  125 (335)
T PF00225_consen   47 RVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYE  125 (335)
T ss_dssp             EEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEE
T ss_pred             eEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccc-ccccccchhhhHHHHHhhhhcccccccccc
Confidence            9999999999999999999999999999999999999999999999998 22334599999999999999887654  78


Q ss_pred             EEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCc-EEEccceEEEcCCHHHHHHHHHhhhccCcc
Q psy11229        181 FLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIG-VYVKDLSAYIANNADDMEKIMSLGNKNRSV  259 (705)
Q Consensus       181 ~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~g-v~v~~l~~~~v~s~~e~~~ll~~g~~~R~~  259 (705)
                      |.|+|||+|||||.|+|||++....          ....+.+++++..| ++|.|++++.|.+++++..+|..|.++|.+
T Consensus       126 ~~v~vS~~EIy~e~v~DLL~~~~~~----------~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~  195 (335)
T PF00225_consen  126 FSVSVSYLEIYNEKVYDLLSPNNSK----------SRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRT  195 (335)
T ss_dssp             EEEEEEEEEEETTEEEETTSTTSSS----------TTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTC
T ss_pred             ccccccchhhhhhhhhhhcCccccc----------cccccceeeccccccceeeccccccccccccccccccchhhcccc
Confidence            9999999999999999999987411          11135679999977 999999999999999999999999999999


Q ss_pred             ccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC-ccccHHHHHHhh
Q psy11229        260 GATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA-SGQRLKEASKIN  338 (705)
Q Consensus       260 ~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rlkE~~~IN  338 (705)
                      +.|.+|..|||||+||+|.|.+.....+..            ......|+|+||||||||+..+.++ .+.+++|+..||
T Consensus       196 ~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~------------~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in  263 (335)
T PF00225_consen  196 ASTKMNARSSRSHAIFTIHVEQKDRDPSDD------------EESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNIN  263 (335)
T ss_dssp             TSSSCTHHGGGSEEEEEEEEEEEETTTTTE------------EEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc------------ccceeecceeeeecccccccccccccccccccccceec
Confidence            999999999999999999999876433220            0125789999999999999999886 488899999999


Q ss_pred             hhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        339 LSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       339 ~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      +||++|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||||...+|+||++||+||+++|+|
T Consensus       264 ~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  264 KSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI  335 (335)
T ss_dssp             HHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred             chhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence            9999999999999987 4589999999999999999999999999999999999999999999999999987

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>KOG0246|consensus

Probab=100.00  E-value=2.1e-70  Score=589.23  Aligned_cols=334  Identities=38%  Similarity=0.552  Sum_probs=289.9

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      -..|.|+||-||++.+|......+++.|. ..+++.|+.|.                  ..+|+..            .-
T Consensus       207 ehrI~VCVRKRPLnkkE~~~keiDvisvp-s~~~l~vHEpk------------------~kVDLtk------------Yl  255 (676)
T KOG0246|consen  207 EHRICVCVRKRPLNKKELTKKEIDVISVP-SKNVLVVHEPK------------------LKVDLTK------------YL  255 (676)
T ss_pred             cceEEEEeecCCCCchhccccccceEecc-ccceEEeeccc------------------cccchHH------------HH
Confidence            46799999999999999999999999885 45677777662                  1122211            12


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHHHh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF~~  171 (705)
                      ..+.|.||++||+.++++.||..+++|||..+|+|--+|+||||||||||||||.|.-.   .....||.-++..++|..
T Consensus       256 En~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~  335 (676)
T KOG0246|consen  256 ENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRL  335 (676)
T ss_pred             hhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHH
Confidence            35789999999999999999999999999999999999999999999999999988532   223469999999999998


Q ss_pred             hhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHH
Q psy11229        172 IAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM  250 (705)
Q Consensus       172 i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll  250 (705)
                      +.... ....+.|++||||||+.+|||||+...+               |.+.||....|.|.||.+..|.+.+|+++++
T Consensus       336 L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~K---------------LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lI  400 (676)
T KOG0246|consen  336 LRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKK---------------LRVLEDGNQQVQVVGLQEEEVSGVEEVLELI  400 (676)
T ss_pred             hcccchhhcceEEEEEEEEEeCcchhhhhccccc---------------eEEeecCCceEEEeeceeeeccCHHHHHHHH
Confidence            87632 2467899999999999999999987432               4459999999999999999999999999999


Q ss_pred             HhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Cccc
Q psy11229        251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQ  329 (705)
Q Consensus       251 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g~  329 (705)
                      ..|+..|+.|.|..|..|||||+||+|.+....                   .....|+++||||||+||.+.|. +..+
T Consensus       401 e~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------------------~~k~hGKfSlIDLAGnERGaDts~adRq  461 (676)
T KOG0246|consen  401 EKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------------------EFKLHGKFSLIDLAGNERGADTSSADRQ  461 (676)
T ss_pred             HhcccccccCcccCcccccccceeEeeeeecCC-------------------cceeEeEEEEEEccCCccCCcccccchh
Confidence            999999999999999999999999999986432                   23457999999999999998776 4556


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCC-CcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229        330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGG-NSKTVMCATVGPASYNYEETISTLRYASRVKK  408 (705)
Q Consensus       330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgG-nskt~mI~~isP~~~~~~ETlsTLrfa~rak~  408 (705)
                      ...||+.||+||+||..||.||...+ .|+|||.||||.+|+|||-| |++|+||+||||...+.+.||+|||||+|+|.
T Consensus       462 tRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKe  540 (676)
T KOG0246|consen  462 TRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKE  540 (676)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHh
Confidence            77899999999999999999997765 89999999999999999988 99999999999999999999999999999999


Q ss_pred             cccccc
Q psy11229        409 ICNKAR  414 (705)
Q Consensus       409 I~n~~~  414 (705)
                      ......
T Consensus       541 Lsv~~~  546 (676)
T KOG0246|consen  541 LSVDGG  546 (676)
T ss_pred             hcCCCC
Confidence            765444

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=6.1e-62  Score=555.42  Aligned_cols=289  Identities=49%  Similarity=0.787  Sum_probs=269.6

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      ..+|.||+||++.++|++||+.++.|++++++.|||+||||||||||||||||.|....+   ||||+++.+||+.+...
T Consensus        55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~---Gii~~~l~~lf~~l~~~  131 (568)
T COG5059          55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP---GIIPLSLKELFSKLEDL  131 (568)
T ss_pred             ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcccc---chHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999999999999999999987555   99999999999999988


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      ..+..|.|.|||+|||||+++|||.+....              +.++++...+|+|.|++.+.+.+.+|++.+|..|..
T Consensus       132 ~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--------------~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~  197 (568)
T COG5059         132 SMTKDFAVSISYLEIYNEKIYDLLSPNEES--------------LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEK  197 (568)
T ss_pred             ccCcceeeEeehhHHHhhHHHhhccCcccc--------------ccccccCCCceEeecceEEecCChHHHHHHHHHhhh
Confidence            767889999999999999999999876542              334788999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.++.|.+|..|||||+||++++.......+.                ...++|+||||||||+...++..+.|++|+.
T Consensus       198 nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~----------------~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~  261 (568)
T COG5059         198 NRTTASTEINDESSRSHSIFQIELASKNKVSGT----------------SETSKLSLVDLAGSERAARTGNRGTRLKEGA  261 (568)
T ss_pred             hcccccchhccccccceEEEEEEEEEeccCccc----------------eecceEEEEeeccccccchhhcccchhhhhh
Confidence            999999999999999999999999887644332                2237899999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhc-CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229        336 KINLSLSTLGNVISALVD-GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR  414 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~-~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~  414 (705)
                      .||+||.+||+||.+|.+ ++..|||||+||||||||++|||+++|+|||||+|...+++||++||+||+||+.|+|++.
T Consensus       262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~  341 (568)
T COG5059         262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ  341 (568)
T ss_pred             hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence            999999999999999987 4458999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy11229        415 VNQ  417 (705)
Q Consensus       415 ~n~  417 (705)
                      .|.
T Consensus       342 ~~~  344 (568)
T COG5059         342 VNS  344 (568)
T ss_pred             ccC
Confidence            996

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=100.00  E-value=2.7e-50  Score=400.66  Aligned_cols=179  Identities=53%  Similarity=0.843  Sum_probs=164.5

Q ss_pred             HHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcCCCceEEEEEEEEEEEcC
Q psy11229        114 IYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNE  193 (705)
Q Consensus       114 Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~~~~~~~V~vS~~EIynE  193 (705)
                      ||+.++ |+|+.+++|||+||||||||||||||||+|....   .||||+++++                          
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~---~Giip~~~~~--------------------------   57 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG---AGIIPRTVTD--------------------------   57 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC---CCcchHHHHH--------------------------
Confidence            999999 9999999999999999999999999999998644   5999999887                          


Q ss_pred             eeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCccccccCCCCCCCcee
Q psy11229        194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHA  273 (705)
Q Consensus       194 ~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~  273 (705)
                                                                          +..++..|..+|.++.|.+|..|||||+
T Consensus        58 ----------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~   85 (186)
T cd01363          58 ----------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHS   85 (186)
T ss_pred             ----------------------------------------------------HHHHHhhccccccccccCCCCccCcccE
Confidence                                                                6788999999999999999999999999


Q ss_pred             EEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHHHHHHHHHHHhc
Q psy11229        274 IFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD  353 (705)
Q Consensus       274 If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~  353 (705)
                      ||+|+|.......+.             ......|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|++
T Consensus        86 i~~i~v~~~~~~~~~-------------~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~  152 (186)
T cd01363          86 VFRIHFGGKNALASA-------------TEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE  152 (186)
T ss_pred             EEEEEEEEeecCCCC-------------ccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc
Confidence            999999876532211             1345689999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCC
Q psy11229        354 GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGP  388 (705)
Q Consensus       354 ~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP  388 (705)
                      +. .||||||||||+||||+|||||+|+||+||||
T Consensus       153 ~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP  186 (186)
T cd01363         153 RD-SHVPYRESKLTRLLQDSLGGNSRTLMVACISP  186 (186)
T ss_pred             CC-CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence            65 79999999999999999999999999999999

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=97.88  E-value=4.5e-08  Score=113.18  Aligned_cols=214  Identities=27%  Similarity=0.316  Sum_probs=133.1

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      ...|.||.+|.....+..++... .-+++..++|    +++||++++|+++||.-.     ..++.+-.+..+|..+...
T Consensus       352 ~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  421 (568)
T COG5059         352 IEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR-----IDLIMKSIISGTFERKKLL  421 (568)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch-----hhhhhhhhhhhhhhhhhhh
Confidence            45699999999999998888764 5677777888    999999999999999532     2366666667778766543


Q ss_pred             C-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229        176 D-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN  254 (705)
Q Consensus       176 ~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~  254 (705)
                      . ..+.+...+-++++|-....+++............      ....++.+      ...+.........+..... ...
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~  488 (568)
T COG5059         422 KEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIH------KLNKLRHD------LSSLLSSIPEETSDRVESE-KAS  488 (568)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH------HHHHHHHH------HHHhhhhcchhhhhhhhhh-hhc
Confidence            2 13334444445555522222222211111000000      00000000      0000000011111111111 567


Q ss_pred             ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229        255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA  334 (705)
Q Consensus       255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~  334 (705)
                      ..+..+.+.+|..++++|++|+..........                ....   +++|||||+||. -....|.++++.
T Consensus       489 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~----------------~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~  548 (568)
T COG5059         489 KLRSSASTKLNLRSSRSHSKFRDHLNGSNSST----------------KELS---LNQVDLAGSERK-VSQSVGELLRET  548 (568)
T ss_pred             cchhhcccchhhhhcccchhhhhcccchhhhh----------------HHHH---hhhhhccccccc-hhhhhHHHHHhh
Confidence            88899999999999999999987653322110                0111   799999999999 888999999999


Q ss_pred             HHhhhhHHHHHHHHHHHh
Q psy11229        335 SKINLSLSTLGNVISALV  352 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~  352 (705)
                      .++|++|..++.+|.++.
T Consensus       549 ~~~~k~l~~~~d~~~~~~  566 (568)
T COG5059         549 QSLNKSLSSLGDVIHALG  566 (568)
T ss_pred             Hhhhhccccchhhhhhcc
Confidence            999999999999998764

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.60  E-value=0.47  Score=49.01  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhcccccccCceeecccccCCCcc
Q psy11229        606 YSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNM  650 (705)
Q Consensus       606 l~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~~~~~~~~~~  650 (705)
                      +.-+..-+-.=+||+-+...+....|....+-=.|..-+=.|=+|
T Consensus       161 ~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m  205 (239)
T COG1579         161 LSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHM  205 (239)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccCCee
Confidence            333444455557888888888888887777766666555555444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.57  E-value=0.37  Score=45.76  Aligned_cols=84  Identities=26%  Similarity=0.429  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      ...++.+.+.....+..++..|++.+...+.+           ......+.+..++....|+.++.....++..++..+.
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~-----------~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~   76 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQEN-----------KECLILDAENSKAEIETLEEELEELTSELNQLELELD   76 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888999999898866433222           1112222333333334444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11229        555 SLQEESEGLSKKLKK  569 (705)
Q Consensus       555 ~l~~e~~~~~~~l~~  569 (705)
                      ++..|.+.+.+.+.+
T Consensus        77 ~l~sEk~~L~k~lq~   91 (140)
T PF10473_consen   77 TLRSEKENLDKELQK   91 (140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.28  E-value=0.25  Score=58.85  Aligned_cols=21  Identities=10%  Similarity=0.396  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q psy11229        422 ALLIKYQKEISELKKKLEEAS  442 (705)
Q Consensus       422 ~~l~~~~~ei~~Lk~~l~~~~  442 (705)
                      ..+.+|..+|++||.+|....
T Consensus       418 ~a~~rLE~dvkkLraeLq~~R  438 (697)
T PF09726_consen  418 DAISRLEADVKKLRAELQSSR  438 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            455688999999999886643

; GO: 0016021 integral to membrane

>KOG1029|consensus

Probab=96.22  E-value=0.2  Score=58.24  Aligned_cols=86  Identities=22%  Similarity=0.252  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD---VQRENRKEIEGFLDNVRQITKEYSYQ  609 (705)
Q Consensus       533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d---~~~e~~~e~e~~~~~~~~~~~el~l~  609 (705)
                      .+|..+.....+.+.-+..+...|+.|.+.|..++..+..++++..-.+..   ..++....++-...++.+|..+|+-+
T Consensus       419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~  498 (1118)
T KOG1029|consen  419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL  498 (1118)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555666777777777777777777666666554332221   12222333333444444444444433


Q ss_pred             HHHHHhcCC
Q psy11229        610 QAIIQKFIP  618 (705)
Q Consensus       610 ~~ii~~fiP  618 (705)
                      +.-+-..+|
T Consensus       499 q~kl~~l~~  507 (1118)
T KOG1029|consen  499 QEKLQKLAP  507 (1118)
T ss_pred             HHHHHhhhh
Confidence            333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.13  E-value=0.29  Score=58.33  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11229        474 ETDAELKRAQSDHQSMVEKLELLQKK  499 (705)
Q Consensus       474 ~~~~~~~~~~~~~~~l~~k~~~l~~~  499 (705)
                      +.+.++++++.+++.....-++|..+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsq  447 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQ  447 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            45556666666655444444444443

; GO: 0016021 integral to membrane

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=96.13  E-value=0.0099  Score=66.76  Aligned_cols=94  Identities=26%  Similarity=0.397  Sum_probs=60.9

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC---CCCCCCCchH--HHHHHHHHh
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN---NVPELKGIIP--NSFAHIFGH  171 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~~~~GIip--r~~~~lF~~  171 (705)
                      ..|....-|.|.-.|-.    ....||+.+-.|.-.-+ -.|.|||||||||-..-   .-|.. =|.|  -...+||+.
T Consensus         3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtL-V~AhNKTLAaQLy~E   76 (663)
T COG0556           3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTL-VLAHNKTLAAQLYSE   76 (663)
T ss_pred             CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeE-EEecchhHHHHHHHH
Confidence            35777778888888854    44667777777765543 47999999999996421   11100 0011  124567776


Q ss_pred             hhhcCCCceEEEEEEEEEEEcCeee
Q psy11229        172 IAKADESVKFLVRVSYFEIYNEEIR  196 (705)
Q Consensus       172 i~~~~~~~~~~V~vS~~EIynE~v~  196 (705)
                      ....-++.....+|||+.-|.-+.|
T Consensus        77 fk~fFP~NaVEYFVSYYDYYQPEAY  101 (663)
T COG0556          77 FKEFFPENAVEYFVSYYDYYQPEAY  101 (663)
T ss_pred             HHHhCcCcceEEEeeeccccCcccc
Confidence            6665556667788999999986643

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.74  E-value=0.73  Score=53.69  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD  597 (705)
Q Consensus       518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~  597 (705)
                      +.....++.+.+....+.+..+.....+...++..+.+|+.+......+|+.+..+|..+..++.++..+...     .+
T Consensus       332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~-----~~  406 (562)
T PHA02562        332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH-----RG  406 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            3444555555555556666666666666667777777777777777777888888888888777777554322     22


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCh
Q psy11229        598 NVRQITKEYSYQQAIIQKFIPT  619 (705)
Q Consensus       598 ~~~~~~~el~l~~~ii~~fiP~  619 (705)
                      .++.+-+.......+++.|+|.
T Consensus       407 ~i~~~~~~~g~~~~i~~~~l~~  428 (562)
T PHA02562        407 IVTDLLKDSGIKASIIKKYIPY  428 (562)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH
Confidence            3444434456667788888875

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=95.40  E-value=2.9  Score=46.52  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy11229        491 EKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK-  569 (705)
Q Consensus       491 ~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~-  569 (705)
                      .+-.+++++.+.-.+.+.-..+..+.+.+..+.+|+.-++--++|...|+..-.--..+-+.|..||+.-..+-.+.++ 
T Consensus       284 ~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i  363 (488)
T PF06548_consen  284 QRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRI  363 (488)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555554445555566666777777788888777777888877765444444555555555544333333221 


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        570 -------------------VSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS  607 (705)
Q Consensus       570 -------------------~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~  607 (705)
                                         -..++.++-.|+..+.-+..+|++-|.+..+.|.-+|+
T Consensus       364 ~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLr  420 (488)
T PF06548_consen  364 MEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLR  420 (488)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence                               24467788888888889999999999988888887764

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.19  E-value=2.8  Score=39.41  Aligned_cols=100  Identities=14%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        510 KAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR  589 (705)
Q Consensus       510 ~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~  589 (705)
                      ....+......+...++....+..+.-..|....++...+...+..++.       ........+...+...........
T Consensus        32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~-------~~~~a~~~l~~~e~sw~~qk~~le  104 (132)
T PF07926_consen   32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA-------EAESAKAELEESEASWEEQKEQLE  104 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444445555555555544444444445555444444444444444444       444444445555555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229        590 KEIEGFLDNVRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       590 ~e~e~~~~~~~~~~~el~l~~~ii~~f  616 (705)
                      .++.++...+.+|..+-+|+.--|+.+
T Consensus       105 ~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen  105 KELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            677777777777777777777666654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0963|consensus

Probab=95.18  E-value=2.4  Score=48.95  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQ--EESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF  595 (705)
Q Consensus       518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~--~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~  595 (705)
                      +.-...+++..+++...++..+..+..+......... +.  +.++.+...|...-..+..+-.++..++..+..+++.+
T Consensus       237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~-~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~  315 (629)
T KOG0963|consen  237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK-LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH  315 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666666666665555554443332221111 11  33455555666667778888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q psy11229        596 LDNVRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       596 ~~~~~~~~~el~l~~~ii~~f  616 (705)
                      -.+|..++++++-+.-+|+..
T Consensus       316 ~~qI~~le~~l~~~~~~leel  336 (629)
T KOG0963|consen  316 KAQISALEKELKAKISELEEL  336 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888887654

>KOG0250|consensus

Probab=95.09  E-value=1.3  Score=53.96  Aligned_cols=131  Identities=19%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy11229        519 DAAAQELEHRKQKEEELKKNI-QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN---RKEIEG  594 (705)
Q Consensus       519 ~~~~~el~~~~~~~~~l~~~l-~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~---~~e~e~  594 (705)
                      ++...+++...+....++++. +....+...++.++..|+.|++.++..+..|..+++.++.++.+.+++.   +.++.+
T Consensus       368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~  447 (1074)
T KOG0250|consen  368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ  447 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            334444444455555555555 5556666778888888888888888888888888888888887776655   244445


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhcCC--hHHHHHHHhhcccccccCceeecccccCCCccccCCC
Q psy11229        595 FLDNVRQITKEYSYQQAI----IQKFIP--TKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVP  655 (705)
Q Consensus       595 ~~~~~~~~~~el~l~~~i----i~~fiP--~~~~~ki~~~~~wdee~~~W~l~~~~~~~~~~~~~~~  655 (705)
                      +...|+....+|+-...-    +..|=|  |.-+.-|..+-..      .+-||+.+-|..+.-..|
T Consensus       448 l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~------f~~~P~GPlG~~Vtl~~~  508 (1074)
T KOG0250|consen  448 LRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR------FQTPPKGPLGKYVTLKEP  508 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc------CCCCCCCCccceeEecCc
Confidence            555555555554433222    344443  2334445433221      367777777765544444

>KOG0995|consensus

Probab=95.07  E-value=7.1  Score=44.82  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK-------KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~-------~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el  606 (705)
                      +....+.+.+.+...+++.++.+..-++.++..+.       ++..+++..+++-.+.......|++.+...+..+.-.+
T Consensus       429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~  508 (581)
T KOG0995|consen  429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL  508 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555556555555554444444444       44444444444444555555555555554444444443


Q ss_pred             HHHHHHHHhc
Q psy11229        607 SYQQAIIQKF  616 (705)
Q Consensus       607 ~l~~~ii~~f  616 (705)
                      .-.....+.+
T Consensus       509 ~~~m~~a~~~  518 (581)
T KOG0995|consen  509 NTSMKEAEEL  518 (581)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK11637 AmiB activator; Provisional

Probab=94.94  E-value=0.51  Score=53.33  Aligned_cols=83  Identities=12%  Similarity=0.182  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      ...+++..+.+++.+..++..+++++           ...+..+.....++.........++.++...+.++..+++.+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~-----------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~  113 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQR-----------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA  113 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555444444444444443322           1222334444444555455555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHH
Q psy11229        555 SLQEESEGLSKKLK  568 (705)
Q Consensus       555 ~l~~e~~~~~~~l~  568 (705)
                      .++.+++.+++.++
T Consensus       114 ~~q~~l~~~~~~l~  127 (428)
T PRK11637        114 KLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555544444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.92  E-value=5.5  Score=41.32  Aligned_cols=11  Identities=18%  Similarity=-0.013  Sum_probs=6.7

Q ss_pred             HHHHHHHHHhc
Q psy11229        606 YSYQQAIIQKF  616 (705)
Q Consensus       606 l~l~~~ii~~f  616 (705)
                      +..+..|+.++
T Consensus       177 l~~yeri~~~~  187 (239)
T COG1579         177 LSEYERIRKNK  187 (239)
T ss_pred             HHHHHHHHhcC
Confidence            45566666665

>KOG4360|consensus

Probab=94.91  E-value=1.8  Score=48.74  Aligned_cols=87  Identities=25%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11229        516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVS---SMLLAAKEERKDVQRENRKEI  592 (705)
Q Consensus       516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~---~~l~~~~~e~~d~~~e~~~e~  592 (705)
                      ...-...+++.....+...+.+.|+.+-.+...+.|..+.|-.++-.+++|++.+.   .++.+.-.+.+|-+++...|.
T Consensus       198 ~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~  277 (596)
T KOG4360|consen  198 QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL  277 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44446677888888888888888888888888888888888888877777776333   223333344444455555555


Q ss_pred             HHHHHHHHHH
Q psy11229        593 EGFLDNVRQI  602 (705)
Q Consensus       593 e~~~~~~~~~  602 (705)
                      +++.+...+.
T Consensus       278 ~EleDkyAE~  287 (596)
T KOG4360|consen  278 EELEDKYAEC  287 (596)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.86  E-value=0.55  Score=50.82  Aligned_cols=105  Identities=21%  Similarity=0.324  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD  597 (705)
Q Consensus       518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~  597 (705)
                      +.....+++..++.+.++.++|++.+.+...+...+..++.+.+.+...-...|..+...+-++.+.++    ++..+..
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~----e~~sl~~  120 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE----ERDSLKN  120 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            344556677777777788888888888888888888888888877777666777666666655554433    3444444


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceeecc
Q psy11229        598 NVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKC  642 (705)
Q Consensus       598 ~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~~  642 (705)
                      ++.....                .++++++.-.||+-=.-|.-.+
T Consensus       121 q~~~~~~----------------~L~~L~ktNv~n~~F~I~hdG~  149 (314)
T PF04111_consen  121 QYEYASN----------------QLDRLRKTNVYNDTFHIWHDGP  149 (314)
T ss_dssp             HHHHHHH----------------HHHCHHT--TTTTT--EEEETT
T ss_pred             HHHHHHH----------------HHHHHHhcCchhceeeEeecCC
Confidence            4333333                3456666666666666666443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.68  E-value=10  Score=43.84  Aligned_cols=20  Identities=10%  Similarity=0.353  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy11229        586 RENRKEIEGFLDNVRQITKE  605 (705)
Q Consensus       586 ~e~~~e~e~~~~~~~~~~~e  605 (705)
                      ++.+.|+.+|++-|+.|+..
T Consensus       434 Eql~~EkQeL~~yi~~Le~r  453 (546)
T PF07888_consen  434 EQLQEEKQELLEYIERLEQR  453 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.67  E-value=4.7  Score=51.47  Aligned_cols=14  Identities=0%  Similarity=0.342  Sum_probs=7.6

Q ss_pred             EEcCCHHHHHHHHH
Q psy11229        238 YIANNADDMEKIMS  251 (705)
Q Consensus       238 ~~v~s~~e~~~ll~  251 (705)
                      +.|.+.+.+..+..
T Consensus       617 ~Iv~~l~~A~~l~~  630 (1163)
T COG1196         617 LVVDDLEQARRLAR  630 (1163)
T ss_pred             EEecCHHHHHHHHH
Confidence            34556666655553

>PRK09039 hypothetical protein; Validated

Probab=94.65  E-value=2.3  Score=46.67  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV  599 (705)
Q Consensus       522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~  599 (705)
                      ..+|...+....+...++.....++..+..++..++.+++..+.+.+....++..++.++.....+...+.+.+..++
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344444444444444444444444444555555555555555555555555555555555544444344444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.65  E-value=2  Score=46.85  Aligned_cols=88  Identities=13%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh
Q psy11229        548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQ  627 (705)
Q Consensus       548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~  627 (705)
                      .+.+.+..+..+++.+++++..+..++..+..++.++    ..++.+++..|.++++.+.-+    . -.-..++.+++.
T Consensus       213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~----~~~k~~l~~eI~e~~~~~~~~----r-~~t~~Ev~~Lk~  283 (325)
T PF08317_consen  213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL----EEQKQELLAEIAEAEKIREEC----R-GWTRSEVKRLKA  283 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh----c-CCCHHHHHHHHH
Confidence            3444444444555555555555444444444444333    224445555555555443221    1 124567777777


Q ss_pred             hcccccccCceeecccc
Q psy11229        628 NATWNEDIGEWELKCVA  644 (705)
Q Consensus       628 ~~~wdee~~~W~l~~~~  644 (705)
                      ....=+..--|.+-.+.
T Consensus       284 ~~~~Le~~~gw~~~~~~  300 (325)
T PF08317_consen  284 KVDALEKLTGWKIVSIS  300 (325)
T ss_pred             HHHHHHHHHCcEEEEEe
Confidence            77777777778886654

>PLN03188 kinesin-12 family protein; Provisional

Probab=94.64  E-value=2.9  Score=52.02  Aligned_cols=111  Identities=23%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy11229        497 QKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK-------  569 (705)
Q Consensus       497 ~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~-------  569 (705)
                      |.+.+.-.+.+--.++....+.++.+.||+.-|+--++|+..|+..-.=-..|-|+|..||+.-..|-.+.++       
T Consensus      1060 es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~d 1139 (1320)
T PLN03188       1060 ESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDD 1139 (1320)
T ss_pred             hhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344333344434445566677778888888888888888888876555555566666666654444333322       


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        570 -------------VSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS  607 (705)
Q Consensus       570 -------------~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~  607 (705)
                                   -..++.++-+|+..+.-+.++||+-|.+.-+.|.-+|+
T Consensus      1140 vkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188       1140 VKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence                         23467777888888888888899888888877777653

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.58  E-value=6.5  Score=45.77  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=13.2

Q ss_pred             EEEEEeccCCCCccccc
Q psy11229        132 GTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       132 ~tIfaYGqTgSGKT~Tm  148 (705)
                      +..+-+|++|+|||..+
T Consensus        28 g~~~i~G~NG~GKStll   44 (562)
T PHA02562         28 KKTLITGKNGAGKSTML   44 (562)
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            35566999999999654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.57  E-value=2.6  Score=53.44  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=11.7

Q ss_pred             EEeccCCCCccccc
Q psy11229        135 FAYGQTGTGKTFTM  148 (705)
Q Consensus       135 faYGqTgSGKT~Tm  148 (705)
                      +-+|++|||||..|
T Consensus        27 ~i~G~NGsGKS~il   40 (1164)
T TIGR02169        27 VISGPNGSGKSNIG   40 (1164)
T ss_pred             EEECCCCCCHHHHH
Confidence            44899999999765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.46  E-value=6.3  Score=39.92  Aligned_cols=19  Identities=42%  Similarity=0.510  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q psy11229        421 DALLIKYQKEISELKKKLE  439 (705)
Q Consensus       421 ~~~l~~~~~ei~~Lk~~l~  439 (705)
                      -.+|..|+++|..++....
T Consensus        26 L~lIksLKeei~emkk~e~   44 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEE   44 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3567778888888877654

>KOG2129|consensus

Probab=94.35  E-value=10  Score=41.83  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        532 EEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       532 ~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      ...|.+.+++.+.+...|+++|.
T Consensus       203 vN~LwKrmdkLe~ekr~Lq~KlD  225 (552)
T KOG2129|consen  203 VNSLWKRMDKLEQEKRYLQKKLD  225 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35677888888888888888775

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.34  E-value=8.9  Score=41.14  Aligned_cols=118  Identities=19%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      ....+..+..+...|+.....|...-       ..-.+..++++....+++.....+...|...|..+.++....++.+.
T Consensus       165 Lq~Klk~LEeEN~~LR~Ea~~L~~et-------~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt  237 (306)
T PF04849_consen  165 LQEKLKSLEEENEQLRSEASQLKTET-------DTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT  237 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHH-------hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555444443211       11122234566677888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy11229        555 SLQEESEGLSKKLKKVSSMLLAAKEER---KDVQRENRKEIEGFLDNV  599 (705)
Q Consensus       555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~---~d~~~e~~~e~e~~~~~~  599 (705)
                      +|..++-.++++++.+..+...+..-+   ++.|.....|..++.+.+
T Consensus       238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY  285 (306)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888888876554433333222   333444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.24  E-value=5.9  Score=45.70  Aligned_cols=8  Identities=38%  Similarity=0.559  Sum_probs=3.5

Q ss_pred             EEEEecCC
Q psy11229        310 LHLVDLAG  317 (705)
Q Consensus       310 L~lVDLAG  317 (705)
                      ++-||=.|
T Consensus        92 fcYv~~~g   99 (546)
T PF07888_consen   92 FCYVDQKG   99 (546)
T ss_pred             EEEECCCc
Confidence            34444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0996|consensus

Probab=94.22  E-value=3.9  Score=50.43  Aligned_cols=66  Identities=21%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK  582 (705)
Q Consensus       517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~  582 (705)
                      .++-++.+|+....+.+.....+.+.......+.+.+...+.++..++..|..+..++.++..++.
T Consensus       501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~  566 (1293)
T KOG0996|consen  501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP  566 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence            334444455555444444444444444444444444444444444444444444444444443333

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.20  E-value=0.029  Score=57.44  Aligned_cols=50  Identities=30%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .|+||.-+..+. ++..|.. +..+.+.--..+|. +|-||++|+||||-|.+
T Consensus         4 ~~tFdnfv~g~~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A   53 (219)
T PF00308_consen    4 KYTFDNFVVGES-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA   53 (219)
T ss_dssp             T-SCCCS--TTT-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred             CCccccCCcCCc-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence            499998776544 5566643 34455542223455 78899999999998754

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0933|consensus

Probab=94.17  E-value=3.9  Score=49.60  Aligned_cols=39  Identities=31%  Similarity=0.364  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM  573 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~  573 (705)
                      |+..+...+.....++..+++|..++..+..++.++...
T Consensus       827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~  865 (1174)
T KOG0933|consen  827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD  865 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            333333333333334444444444444444444333333

>KOG0933|consensus

Probab=94.05  E-value=4.9  Score=48.82  Aligned_cols=93  Identities=24%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        514 QQQLLDAAAQELEHRKQKEEELKKNIQEKD-------AERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR  586 (705)
Q Consensus       514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~-------~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~  586 (705)
                      ++..+.++..+++..+++.++-...++..+       .|...++..+++++...+.+...+..+..++-.+...+.+.+.
T Consensus       785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~  864 (1174)
T KOG0933|consen  785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK  864 (1174)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            333444444444444444444333333333       3333444444444444455555555554444444444444322


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Q psy11229        587 ---ENRKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       587 ---e~~~e~e~~~~~~~~~~~el  606 (705)
                         +-+.+..+....++.+..++
T Consensus       865 ~~~~~~~el~~~k~k~~~~dt~i  887 (1174)
T KOG0933|consen  865 DVKKAQAELKDQKAKQRDIDTEI  887 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHH
Confidence               22334444444455555554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.04  E-value=7.3  Score=41.24  Aligned_cols=103  Identities=15%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV  599 (705)
Q Consensus       520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~  599 (705)
                      ....++++.+.+...++..++...++.....+++..+++.++.....+.......+.......+...+....+..+....
T Consensus        60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  139 (302)
T PF10186_consen   60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ  139 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555666666666666666666666666666666666553333333333333333333333333333322


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHH
Q psy11229        600 RQITKEYSYQQAIIQKFIPTKYL  622 (705)
Q Consensus       600 ~~~~~el~l~~~ii~~fiP~~~~  622 (705)
                      ..+...-...-..+..+.|-...
T Consensus       140 ~~l~~~r~~l~~~l~~ifpI~~~  162 (302)
T PF10186_consen  140 SQLARRRRQLIQELSEIFPIEQV  162 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhCceee
Confidence            22222222222234456666544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0804|consensus

Probab=93.98  E-value=3.1  Score=46.28  Aligned_cols=72  Identities=8%  Similarity=0.070  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy11229        549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMT  626 (705)
Q Consensus       549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~  626 (705)
                      ++.++..++.|....+..-+.+...+..-...++.+++.....+..+.+.|.+|+.+|+=.+.      -.+-+++|+
T Consensus       387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf------~le~qqklk  458 (493)
T KOG0804|consen  387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF------FLEAQQKLK  458 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe------ehhhhhhhh
Confidence            333333333333333332233333333334444455555555555555555555555443332      234456665

>PRK06893 DNA replication initiation factor; Validated

Probab=93.97  E-value=0.04  Score=56.79  Aligned_cols=48  Identities=15%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..++||..+..... .-     +.-+...+-.++|..++-||++|+||||.+.+
T Consensus        11 ~~~~fd~f~~~~~~-~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a   58 (229)
T PRK06893         11 DDETLDNFYADNNL-LL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA   58 (229)
T ss_pred             CcccccccccCChH-HH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence            45899999976532 11     22223333457788899999999999998854

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.90  E-value=3.7  Score=40.84  Aligned_cols=13  Identities=38%  Similarity=0.509  Sum_probs=5.0

Q ss_pred             hHHHHHHHHHHHH
Q psy11229        485 DHQSMVEKLELLQ  497 (705)
Q Consensus       485 ~~~~l~~k~~~l~  497 (705)
                      ....+.+++..++
T Consensus        89 ~l~~l~~el~~l~  101 (191)
T PF04156_consen   89 QLQQLQEELDQLQ  101 (191)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0250|consensus

Probab=93.83  E-value=5.1  Score=49.17  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        516 QLLDAAAQEL-EHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       516 ~~l~~~~~el-~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      +++.....+. .....+..+++..++....+...+++.+++|.+|.+....+++....+.-.++.++.++
T Consensus       379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l  448 (1074)
T KOG0250|consen  379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL  448 (1074)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3333333333 33444455566666666666666666666666666666666665555555555555444

>PRK03918 chromosome segregation protein; Provisional

Probab=93.82  E-value=12  Score=46.23  Aligned_cols=14  Identities=36%  Similarity=0.693  Sum_probs=11.6

Q ss_pred             EEeccCCCCccccc
Q psy11229        135 FAYGQTGTGKTFTM  148 (705)
Q Consensus       135 faYGqTgSGKT~Tm  148 (705)
                      +-+|++|||||..|
T Consensus        27 ~i~G~nG~GKStil   40 (880)
T PRK03918         27 LIIGQNGSGKSSIL   40 (880)
T ss_pred             EEEcCCCCCHHHHH
Confidence            36899999999764

>KOG0971|consensus

Probab=93.76  E-value=5.3  Score=47.87  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK  582 (705)
Q Consensus       548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~  582 (705)
                      -.||+-.+||.|++.++.++..+...+.-+++|+.
T Consensus       322 mAEERaesLQ~eve~lkEr~deletdlEILKaEme  356 (1243)
T KOG0971|consen  322 MAEERAESLQQEVEALKERVDELETDLEILKAEME  356 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666655555555555544

>KOG0980|consensus

Probab=93.75  E-value=4.8  Score=48.24  Aligned_cols=21  Identities=29%  Similarity=0.654  Sum_probs=9.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHH
Q psy11229        418 DPKDALLIKYQKEISELKKKL  438 (705)
Q Consensus       418 ~~~~~~l~~~~~ei~~Lk~~l  438 (705)
                      |+.+..+..+..+++.++.+|
T Consensus       329 d~~~~~~~~~~~e~~~~~~~l  349 (980)
T KOG0980|consen  329 DPRELQIEQLSREVAQLKAQL  349 (980)
T ss_pred             ChhhHHHHHHHHHHHHHhhhh
Confidence            344444444444444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.73  E-value=2.4  Score=46.12  Aligned_cols=51  Identities=22%  Similarity=0.297  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      .++.+|.....+.......+..++.+.+.++.+++.+..+...+..++.+.
T Consensus       213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.69  E-value=4.9  Score=50.93  Aligned_cols=11  Identities=0%  Similarity=0.286  Sum_probs=7.0

Q ss_pred             CHHHHHHHHHh
Q psy11229        242 NADDMEKIMSL  252 (705)
Q Consensus       242 s~~e~~~ll~~  252 (705)
                      +..++..++..
T Consensus       118 ~~~~~~~~l~~  128 (1164)
T TIGR02169       118 RLSEIHDFLAA  128 (1164)
T ss_pred             cHHHHHHHHHH
Confidence            46777776653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.66  E-value=9.1  Score=49.78  Aligned_cols=18  Identities=33%  Similarity=0.351  Sum_probs=14.5

Q ss_pred             EEEEEeccCCCCcccccc
Q psy11229        132 GTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       132 ~tIfaYGqTgSGKT~Tm~  149 (705)
                      +++.-+|++|+|||.+|-
T Consensus        28 ~~~~l~G~NGaGKSTll~   45 (1486)
T PRK04863         28 LVTTLSGGNGAGKSTTMA   45 (1486)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            355678999999999874

>KOG0980|consensus

Probab=93.64  E-value=5.1  Score=47.96  Aligned_cols=97  Identities=10%  Similarity=0.191  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK-------EIEGF  595 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~-------e~e~~  595 (705)
                      .+..+..++.+.-+..+.+.+++...+..++..++.+.+....|.+.....+.+.+.|+.-++.+.+.       -.+..
T Consensus       445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~  524 (980)
T KOG0980|consen  445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSH  524 (980)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33334333333333444444445555555555555555443344444444444444444444333222       22223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCh
Q psy11229        596 LDNVRQITKEYSYQQAIIQKFIPT  619 (705)
Q Consensus       596 ~~~~~~~~~el~l~~~ii~~fiP~  619 (705)
                      -....++...++-+...+....-.
T Consensus       525 ~~~~~~l~~~l~~KD~~~~~~~~~  548 (980)
T KOG0980|consen  525 NNQLAQLEDLLKQKDRLAAELVAR  548 (980)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            333344455555555555555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.52  E-value=7  Score=46.71  Aligned_cols=90  Identities=20%  Similarity=0.317  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy11229        512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE---ESEGLSKKLKKVSSMLLAAKEERK---DVQ  585 (705)
Q Consensus       512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~---e~~~~~~~l~~~~~~l~~~~~e~~---d~~  585 (705)
                      +..+.....++.++.+.|.++..|-+...+.++|.+.|++.++.|.+   |-+++.-.|+++..+...+...+.   .+.
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk  151 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK  151 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455567788888889999999999999999999999998765   667888888888777666655444   456


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11229        586 RENRKEIEGFLDNVRQ  601 (705)
Q Consensus       586 ~e~~~e~e~~~~~~~~  601 (705)
                      +--++++++.++++..
T Consensus       152 ~iae~qleEALesl~~  167 (717)
T PF09730_consen  152 EIAEKQLEEALESLKS  167 (717)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777788888888753

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1029|consensus

Probab=93.49  E-value=5.6  Score=46.97  Aligned_cols=82  Identities=17%  Similarity=0.230  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES---EGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG  594 (705)
Q Consensus       518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~---~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~  594 (705)
                      ++....++.+.+.++.++++.|...--|...++.++...|.-.   ......|++...+-..+...++|...+...|.+.
T Consensus       481 ~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es  560 (1118)
T KOG1029|consen  481 RELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES  560 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555566666666666666555566666555444322   1112223333333333444444444444444444


Q ss_pred             HHHHH
Q psy11229        595 FLDNV  599 (705)
Q Consensus       595 ~~~~~  599 (705)
                      -+..|
T Consensus       561 k~~ei  565 (1118)
T KOG1029|consen  561 KLNEI  565 (1118)
T ss_pred             HHHhh
Confidence            44433

>PRK09039 hypothetical protein; Validated

Probab=93.41  E-value=9.1  Score=42.03  Aligned_cols=55  Identities=15%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ  585 (705)
Q Consensus       531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~  585 (705)
                      +...+..+|.+......+..-++..|+.+++.++++|..+...|.+++.+..+.+
T Consensus       117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~  171 (343)
T PRK09039        117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ  171 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555544444455555555666666666666666666666555554443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.39  E-value=6.4  Score=49.81  Aligned_cols=11  Identities=36%  Similarity=0.770  Sum_probs=4.7

Q ss_pred             CCEEEEeCCCC
Q psy11229         46 NGIITVKNPAG   56 (705)
Q Consensus        46 ~~~v~v~~p~~   56 (705)
                      .+.+.|..|.|
T Consensus        23 ~~~~~i~G~NG   33 (1179)
T TIGR02168        23 KGITGIVGPNG   33 (1179)
T ss_pred             CCcEEEECCCC
Confidence            33444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=93.19  E-value=20  Score=44.41  Aligned_cols=14  Identities=29%  Similarity=0.496  Sum_probs=10.9

Q ss_pred             EEeccCCCCccccc
Q psy11229        135 FAYGQTGTGKTFTM  148 (705)
Q Consensus       135 faYGqTgSGKT~Tm  148 (705)
                      +-+|++|||||..+
T Consensus        27 ~i~G~Ng~GKStil   40 (880)
T PRK02224         27 VIHGVNGSGKSSLL   40 (880)
T ss_pred             EEECCCCCCHHHHH
Confidence            34899999998653

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.18  E-value=5.7  Score=38.11  Aligned_cols=77  Identities=23%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI  602 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~  602 (705)
                      .+++......+.|+.+++..+.+       +...+.....++++++.+...++..++|+..+....+.-+..+...++..
T Consensus        66 ~d~~~l~~~~~rL~~~~~~~ere-------~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk  138 (151)
T PF11559_consen   66 SDIERLQNDVERLKEQLEELERE-------LASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK  138 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444       44444444444455555555555555566666555555566666666666


Q ss_pred             HHHH
Q psy11229        603 TKEY  606 (705)
Q Consensus       603 ~~el  606 (705)
                      ++|+
T Consensus       139 e~E~  142 (151)
T PF11559_consen  139 EREI  142 (151)
T ss_pred             HHHH
Confidence            6664

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.18  E-value=14  Score=39.62  Aligned_cols=98  Identities=15%  Similarity=0.288  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEG----LSKKLKKVSSMLLAAKEERKDVQREN  588 (705)
Q Consensus       513 ~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~----~~~~l~~~~~~l~~~~~e~~d~~~e~  588 (705)
                      .....+.....++...+.....|...+.........++..+..++.....    ....|..+..++..++.+    ...+
T Consensus       206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~----~~~~  281 (312)
T PF00038_consen  206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE----MARQ  281 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred             ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH----HHHH
Confidence            33444555566666666666667766666666666666666665544432    222233333333333333    3334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQITKEYSYQQAIIQ  614 (705)
Q Consensus       589 ~~e~e~~~~~~~~~~~el~l~~~ii~  614 (705)
                      .++.++|++.--.|..|+.-+.-+++
T Consensus       282 ~~ey~~Ll~~K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  282 LREYQELLDVKLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            44556777777788888877776665

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.07  E-value=5  Score=41.49  Aligned_cols=71  Identities=13%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      .+..|.++.++.+..........+.|++..+++..||..+++++.|.+.....+.+++.+|.-++.++..+
T Consensus        30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~  100 (230)
T PF10146_consen   30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL  100 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555666666655555555555555555555555555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0996|consensus

Probab=93.02  E-value=4.4  Score=49.94  Aligned_cols=12  Identities=33%  Similarity=0.684  Sum_probs=10.2

Q ss_pred             eccCCCCccccc
Q psy11229        137 YGQTGTGKTFTM  148 (705)
Q Consensus       137 YGqTgSGKT~Tm  148 (705)
                      .|+.||||+-.+
T Consensus       114 vGPNGSGKSNVI  125 (1293)
T KOG0996|consen  114 VGPNGSGKSNVI  125 (1293)
T ss_pred             ECCCCCCchHHH
Confidence            699999999664

>KOG0804|consensus

Probab=92.97  E-value=6.3  Score=43.92  Aligned_cols=38  Identities=13%  Similarity=0.182  Sum_probs=18.8

Q ss_pred             EcCCHHHHHHHHHhhhccCccccccCCCC-CCCceeEEEEEEEee
Q psy11229        239 IANNADDMEKIMSLGNKNRSVGATAMNEV-SSRSHAIFSIIIETS  282 (705)
Q Consensus       239 ~v~s~~e~~~ll~~g~~~R~~~~T~~N~~-SSRSH~If~i~v~~~  282 (705)
                      ..++.+++..++..-+..      .+|.- +--.|.+|-..|+..
T Consensus       121 kFr~q~da~~Fy~efNGk------~Fn~le~e~Chll~V~~ve~~  159 (493)
T KOG0804|consen  121 KFRDQADADTFYEEFNGK------QFNSLEPEVCHLLYVDRVEVT  159 (493)
T ss_pred             EeccchhHHHHHHHcCCC------cCCCCCccceeEEEEEEEEEE
Confidence            345566666665432221      22221 224688887766544

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.87  E-value=11  Score=39.90  Aligned_cols=17  Identities=18%  Similarity=0.534  Sum_probs=7.0

Q ss_pred             HHHHHHHhHHHHHHHHH
Q psy11229        478 ELKRAQSDHQSMVEKLE  494 (705)
Q Consensus       478 ~~~~~~~~~~~l~~k~~  494 (705)
                      ++...+.+.+.+..+++
T Consensus        28 ~l~~~~~~~~~l~~~i~   44 (302)
T PF10186_consen   28 ELQQLKEENEELRRRIE   44 (302)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0971|consensus

Probab=92.87  E-value=5.3  Score=47.87  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES  560 (705)
Q Consensus       522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~  560 (705)
                      .++++..+....+|++.-+...++...+|.++..|++.+
T Consensus       402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555666666666555

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.86  E-value=0.056  Score=57.23  Aligned_cols=31  Identities=35%  Similarity=0.564  Sum_probs=28.2

Q ss_pred             hhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229        119 ARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       119 ~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      +.|+|..+++--+|.|+.-|+||||||.||-
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA  143 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA  143 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence            4678888999999999999999999999983

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.85  E-value=5.4  Score=44.57  Aligned_cols=30  Identities=23%  Similarity=0.250  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        558 EESEGLSKKLKKVSSMLLAAKEERKDVQRE  587 (705)
Q Consensus       558 ~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e  587 (705)
                      .|.+.+.+.|.++..+...+..++.+...+
T Consensus       375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~le  404 (622)
T COG5185         375 QEREKLTRELDKINIQSDKLTKSVKSRKLE  404 (622)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence            344444555554444444444444443333

>KOG0995|consensus

Probab=92.81  E-value=20  Score=41.36  Aligned_cols=85  Identities=19%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG  594 (705)
Q Consensus       515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~  594 (705)
                      ...++..+.|++..++...+|+..++.+.=.    -+.+..+..|.+.+++.|.++..++..+.+++-++..+.+...++
T Consensus       300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS----~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~  375 (581)
T KOG0995|consen  300 KSEIEEKEEEIEKLQKENDELKKQIELQGIS----GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKE  375 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3344445555666666666666666554211    122233444445555555555555555555555554444444444


Q ss_pred             HHHHHHHHH
Q psy11229        595 FLDNVRQIT  603 (705)
Q Consensus       595 ~~~~~~~~~  603 (705)
                      ++....++.
T Consensus       376 le~~~~~~~  384 (581)
T KOG0995|consen  376 LEKKFIDLN  384 (581)
T ss_pred             HHHHHHHHH
Confidence            444443333

>KOG0994|consensus

Probab=92.79  E-value=18  Score=44.78  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        479 LKRAQSDHQSMVEKLELLQKKVLVGGEN---LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSS  555 (705)
Q Consensus       479 ~~~~~~~~~~l~~k~~~l~~~~~~~~~~---~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~  555 (705)
                      +..+-+.+.+|..++++|..+.......   +.+.+..-.......++.++.+.+..+...+.++.+-+......++...
T Consensus      1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~ 1693 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQ 1693 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            4444455556666666666554433211   1111111112222333444443333333333343333333444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy11229        556 LQEESEGLSKKLKKVSSMLLAAKEERKDVQ---RENRKEIEGFLDNVRQITKEYS  607 (705)
Q Consensus       556 l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~---~e~~~e~e~~~~~~~~~~~el~  607 (705)
                      |++|.+.|...-..       ....++|++   ...++.++++...+-.|++++.
T Consensus      1694 L~~eA~~Ll~~a~~-------kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQANE-------KLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence            55555433322222       222233332   3334455555555555555543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.78  E-value=7.3  Score=49.30  Aligned_cols=16  Identities=25%  Similarity=0.291  Sum_probs=13.5

Q ss_pred             EEEEeccCCCCccccc
Q psy11229        133 TIFAYGQTGTGKTFTM  148 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm  148 (705)
                      +..-+|++|||||..|
T Consensus        25 ~~~i~G~NGsGKS~ll   40 (1179)
T TIGR02168        25 ITGIVGPNGCGKSNIV   40 (1179)
T ss_pred             cEEEECCCCCChhHHH
Confidence            4456899999999887

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=92.76  E-value=18  Score=47.00  Aligned_cols=16  Identities=19%  Similarity=0.588  Sum_probs=8.5

Q ss_pred             EeCCCCEEEEeCCCCC
Q psy11229         42 VDLLNGIITVKNPAGS   57 (705)
Q Consensus        42 ~~~~~~~v~v~~p~~~   57 (705)
                      ++...+.+.|..|.|+
T Consensus        24 I~F~~~~~~I~G~NGa   39 (1311)
T TIGR00606        24 IDFFSPLTILVGPNGA   39 (1311)
T ss_pred             eecccceEEEECCCCC
Confidence            3344556666666543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.62  E-value=9.1  Score=41.45  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11229        545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLEL  624 (705)
Q Consensus       545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~k  624 (705)
                      +...+.+++..+..++..+.+++..+..++..+...+.+.    ..++.++...|+++++.+.-+    . -.-..|+.+
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~----~~~k~e~~~~I~~ae~~~~~~----r-~~t~~Ei~~  275 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL----TNKKSELNTEIAEAEKKLEQC----R-GFTFKEIEK  275 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc----C-CCCHHHHHH
Confidence            3444556666666666666666666555555555444433    335566666666666633221    1 233456777


Q ss_pred             HHhhcccccccCceeeccc
Q psy11229        625 MTQNATWNEDIGEWELKCV  643 (705)
Q Consensus       625 i~~~~~wdee~~~W~l~~~  643 (705)
                      ++.....=+..--|.+..+
T Consensus       276 Lk~~~~~Le~l~g~~~~~~  294 (312)
T smart00787      276 LKEQLKLLQSLTGWKITKL  294 (312)
T ss_pred             HHHHHHHHHHHhCCeeEec
Confidence            7776666666666777665

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0161|consensus

Probab=92.58  E-value=14  Score=48.89  Aligned_cols=66  Identities=26%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      ...++++...+...+++...+++.+.+....+.++..|++++..+...+.++...-+.+.+.+.++
T Consensus       932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l  997 (1930)
T KOG0161|consen  932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIREL  997 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555556666666666666666666666666666665555555444444433333333

>KOG0161|consensus

Probab=92.51  E-value=9.1  Score=50.48  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             CCCCEEEEEeccCCCCcccc
Q psy11229        128 SGFNGTIFAYGQTGTGKTFT  147 (705)
Q Consensus       128 ~G~N~tIfaYGqTgSGKT~T  147 (705)
                      ++-|-+|++-|-+|+|||-.
T Consensus       165 ~renQSiLiTGESGAGKTeN  184 (1930)
T KOG0161|consen  165 DRENQSILITGESGAGKTEN  184 (1930)
T ss_pred             cCCCceEeeecCCCCCcchh
Confidence            58899999999999999943

>PRK06620 hypothetical protein; Validated

Probab=92.33  E-value=0.068  Score=54.56  Aligned_cols=50  Identities=22%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC---EEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN---GTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N---~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..|+||..+...++. ..|..+. .+.+. . |+|   -.+|-||++||||||.+..
T Consensus        11 ~~~tfd~Fvvg~~N~-~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a   63 (214)
T PRK06620         11 SKYHPDEFIVSSSND-QAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI   63 (214)
T ss_pred             CCCCchhhEecccHH-HHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence            358999888766554 5665542 33321 1 444   3589999999999998853

>KOG0977|consensus

Probab=92.27  E-value=18  Score=41.92  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        569 KVSSMLLAAKEERKDVQRENRKEIEGFLDN  598 (705)
Q Consensus       569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~  598 (705)
                      .+....+.+.+++.-+...|..|+++....
T Consensus       201 d~~n~~q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  201 DLQNRVQTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             HHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            344455666666666666666666555443

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=92.23  E-value=0.1  Score=60.87  Aligned_cols=52  Identities=27%  Similarity=0.438  Sum_probs=36.0

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...|+||..+-..++ .-+|. .+..+++..-.+||. ||-||.+|+||||.+..
T Consensus       282 ~~~~TFDnFvvG~sN-~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A  333 (617)
T PRK14086        282 NPKYTFDTFVIGASN-RFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA  333 (617)
T ss_pred             CCCCCHhhhcCCCcc-HHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence            456999987755543 34553 345555544456786 89999999999998854

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.22  E-value=8.5  Score=36.89  Aligned_cols=55  Identities=18%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA  577 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~  577 (705)
                      ..++..+.+.++++..+...+.....++.++.+++.........+.++...++..
T Consensus        73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~  127 (151)
T PF11559_consen   73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR  127 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555444444455555544444444444444444333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG1853|consensus

Probab=92.20  E-value=16  Score=37.79  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy11229        591 EIEGFLDNVRQITKEYSYQQAI  612 (705)
Q Consensus       591 e~e~~~~~~~~~~~el~l~~~i  612 (705)
                      +...|.+.-|.|..||.+..--
T Consensus       165 svqRLkdEardlrqelavr~kq  186 (333)
T KOG1853|consen  165 SVQRLKDEARDLRQELAVRTKQ  186 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555566677777776643

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.14  E-value=4.6  Score=46.67  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQ  614 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~  614 (705)
                      ....+...+.....+++..+.|+.+++.+++.+.++.+++..++.++. ......++.+.+...|..|+++|.-+..-++
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve  498 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVE  498 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555666666666666666666666666665555 3333455666666666666666655554444


Q ss_pred             h
Q psy11229        615 K  615 (705)
Q Consensus       615 ~  615 (705)
                      .
T Consensus       499 ~  499 (652)
T COG2433         499 E  499 (652)
T ss_pred             H
Confidence            3

>KOG0982|consensus

Probab=92.10  E-value=16  Score=40.49  Aligned_cols=45  Identities=16%  Similarity=0.173  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Q psy11229        574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEY-SYQQAIIQKFIP  618 (705)
Q Consensus       574 l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el-~l~~~ii~~fiP  618 (705)
                      .+....++.|....|+++++..++-|.++.++| .++..+.+.-.|
T Consensus       351 eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p  396 (502)
T KOG0982|consen  351 EQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANP  396 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            345556677777889999999999999999996 455555555544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.05  E-value=3.2  Score=41.72  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELLQ  497 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l~  497 (705)
                      ..++..+......+..++..+.
T Consensus        80 ~~ELael~r~~~el~~~L~~~~  101 (194)
T PF08614_consen   80 QEELAELYRSKGELAQQLVELN  101 (194)
T ss_dssp             ----------------------
T ss_pred             cccccccccccccccccccccc
Confidence            3444444444445555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=91.85  E-value=12  Score=41.87  Aligned_cols=21  Identities=10%  Similarity=0.365  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELL  496 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l  496 (705)
                      -.++++.+.+...|.+++.+.
T Consensus       270 ~~~i~~lk~~n~~l~e~i~ea  290 (622)
T COG5185         270 NTDIANLKTQNDNLYEKIQEA  290 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.82  E-value=27  Score=42.53  Aligned_cols=43  Identities=5%  Similarity=0.031  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceee
Q psy11229        594 GFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWEL  640 (705)
Q Consensus       594 ~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l  640 (705)
                      .....+.+|+|+......+.+.|.-.-+..++..    .-....|++
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~----~~~~~~~~v  415 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ----NYVPVDARV  415 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcEE
Confidence            3456778888998888888888887766666665    234455554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK02224 chromosome segregation protein; Provisional

Probab=91.72  E-value=13  Score=45.94  Aligned_cols=51  Identities=14%  Similarity=0.265  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      .+...+...+.+...+++.++.+..+++....+++.....+..+..++.++
T Consensus       346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444555555555555555555555555555555544444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.54  E-value=7  Score=39.75  Aligned_cols=10  Identities=20%  Similarity=0.527  Sum_probs=5.5

Q ss_pred             HHHHHHhcCC
Q psy11229        609 QQAIIQKFIP  618 (705)
Q Consensus       609 ~~~ii~~fiP  618 (705)
                      .-+|+-+++|
T Consensus       187 lGlilp~l~p  196 (206)
T PRK10884        187 LGLLLPHLIP  196 (206)
T ss_pred             HHHHhccccc
Confidence            4455555555

>PRK03918 chromosome segregation protein; Provisional

Probab=91.39  E-value=14  Score=45.49  Aligned_cols=11  Identities=36%  Similarity=0.489  Sum_probs=7.3

Q ss_pred             EEcCeeeeccC
Q psy11229        190 IYNEEIRDLLS  200 (705)
Q Consensus       190 IynE~v~DLL~  200 (705)
                      |....+..++.
T Consensus       132 ~~Qg~~~~~~~  142 (880)
T PRK03918        132 IRQGEIDAILE  142 (880)
T ss_pred             EeccchHHHhc
Confidence            66777777664

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.36  E-value=13  Score=34.98  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE  605 (705)
Q Consensus       550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e  605 (705)
                      -+.+..++++...++..+..+......++..+......+..++..+...+..+.+.
T Consensus        58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r  113 (132)
T PF07926_consen   58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR  113 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666777777777777777777777777777776666666554

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK12377 putative replication protein; Provisional

Probab=91.31  E-value=0.14  Score=53.42  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+
T Consensus        70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A  120 (248)
T PRK12377         70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA  120 (248)
T ss_pred             cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence            34788766555667667754 567777776665 4578899999999999854

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.20  E-value=10  Score=37.65  Aligned_cols=10  Identities=30%  Similarity=0.518  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q psy11229        488 SMVEKLELLQ  497 (705)
Q Consensus       488 ~l~~k~~~l~  497 (705)
                      .....+..++
T Consensus        85 ~~~~~l~~l~   94 (191)
T PF04156_consen   85 ELQQQLQQLQ   94 (191)
T ss_pred             hHHHHHHHHH
Confidence            3333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.09  E-value=5.7  Score=40.42  Aligned_cols=10  Identities=10%  Similarity=0.361  Sum_probs=4.1

Q ss_pred             HHHHHHhcCC
Q psy11229        609 QQAIIQKFIP  618 (705)
Q Consensus       609 ~~~ii~~fiP  618 (705)
                      .-+|+--++|
T Consensus       183 ~GlllGlilp  192 (206)
T PRK10884        183 IGLLLGLLLP  192 (206)
T ss_pred             HHHHHHHHhc
Confidence            3344444444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=91.09  E-value=28  Score=42.28  Aligned_cols=92  Identities=23%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKE  591 (705)
Q Consensus       512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e  591 (705)
                      +..+..+....++.+......+.|...+..+..........+..+++|...+...|.++..++.....++..++.    .
T Consensus       325 ~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~----k  400 (775)
T PF10174_consen  325 EVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK----K  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            333344444455555555555566666666665555566666666666666666666666666665555555544    3


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11229        592 IEGFLDNVRQITKEYS  607 (705)
Q Consensus       592 ~e~~~~~~~~~~~el~  607 (705)
                      ++.+.+.+++-.+++.
T Consensus       401 ie~Lee~l~ekd~ql~  416 (775)
T PF10174_consen  401 IENLEEQLREKDRQLD  416 (775)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555555555555443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0612|consensus

Probab=91.01  E-value=16  Score=45.57  Aligned_cols=76  Identities=21%  Similarity=0.231  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE-RKD-----VQRENRKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e-~~d-----~~~e~~~e~e~~~~~~~~~~~el  606 (705)
                      +...+......+....+++.+++|++..+.+...++++.. +.....| +.+     +...+.+++..+.+...+...|.
T Consensus       612 e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~  690 (1317)
T KOG0612|consen  612 EKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEH  690 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555666777777777777777777766655 3222222 222     33355666666666666666665


Q ss_pred             HHH
Q psy11229        607 SYQ  609 (705)
Q Consensus       607 ~l~  609 (705)
                      +..
T Consensus       691 ~~~  693 (1317)
T KOG0612|consen  691 HRL  693 (1317)
T ss_pred             HHH
Confidence            444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.01  E-value=12  Score=40.64  Aligned_cols=71  Identities=18%  Similarity=0.232  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN-------RKEIEGFLDNVRQITKE  605 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~-------~~e~e~~~~~~~~~~~e  605 (705)
                      ++.+|.+...+......++..+++++..++.+|+....+......++.+.+...       ..|...+.+.++.+++.
T Consensus       209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            334444444444444455555555555555555555555555555555444332       34455555555544443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK09087 hypothetical protein; Validated

Probab=90.96  E-value=0.16  Score=52.33  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ..|+||..+..+++. .+|..     +.....-.+..++-||++||||||.+.
T Consensus        16 ~~~~~~~Fi~~~~N~-~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         16 PAYGRDDLLVTESNR-AAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CCCChhceeecCchH-HHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence            458999988655544 46663     333222235568999999999999885

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.89  E-value=8.3  Score=46.50  Aligned_cols=71  Identities=21%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI  602 (705)
Q Consensus       532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~  602 (705)
                      ..++++.++...+....+.++|....+.-+.+.++++.+...+....-.+.+-+.++..|.+.+.+.++.+
T Consensus       581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l  651 (717)
T PF10168_consen  581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDL  651 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444445556666666666666666665555544433333344444444444444444433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.85  E-value=19  Score=36.01  Aligned_cols=13  Identities=23%  Similarity=0.429  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHH
Q psy11229        426 KYQKEISELKKKL  438 (705)
Q Consensus       426 ~~~~ei~~Lk~~l  438 (705)
                      +|+.|...|+..+
T Consensus        19 ~L~~en~kL~~~v   31 (193)
T PF14662_consen   19 KLADENAKLQRSV   31 (193)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.75  E-value=24  Score=38.28  Aligned_cols=90  Identities=20%  Similarity=0.317  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy11229        517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQ------------EESEGLSKKLKKVSSMLLAAKEERK--  582 (705)
Q Consensus       517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~------------~e~~~~~~~l~~~~~~l~~~~~e~~--  582 (705)
                      ++.+.+.+.........+|++.+.+...++..+.+++...+            .|-+.+-..|+++..++.+++.++.  
T Consensus        73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~  152 (319)
T PF09789_consen   73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444555555555444444444444322            3445555666666666666666665  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        583 -DVQRENRKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       583 -d~~~e~~~e~e~~~~~~~~~~~el  606 (705)
                       |..+|...||..+......|+.||
T Consensus       153 lDEkeEl~~ERD~yk~K~~RLN~EL  177 (319)
T PF09789_consen  153 LDEKEELVTERDAYKCKAHRLNHEL  177 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             345666778888888888888886

>PRK05642 DNA replication initiation factor; Validated

Probab=90.73  E-value=0.16  Score=52.58  Aligned_cols=47  Identities=17%  Similarity=0.484  Sum_probs=29.2

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhC---CC-CEEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLS---GF-NGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~---G~-N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..|+||.-+...  +..++     ..+....+   ++ +..++-||.+|+||||-+.+
T Consensus        14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a   64 (234)
T PRK05642         14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA   64 (234)
T ss_pred             CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence            358999887442  22333     33333322   22 24688999999999998753

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.67  E-value=24  Score=36.91  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL  575 (705)
Q Consensus       542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~  575 (705)
                      .+++...|+..-....++...|..++......+.
T Consensus        59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~   92 (246)
T PF00769_consen   59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA   92 (246)
T ss_dssp             HHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444433334444444444443333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.61  E-value=18  Score=38.88  Aligned_cols=80  Identities=14%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA  611 (705)
Q Consensus       532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~  611 (705)
                      ..++...............+.+..++..+..+..+|..+......++..+.+++..+..++..+...|..++.++.-...
T Consensus       197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~  276 (312)
T PF00038_consen  197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE  276 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence            34444444444444455555556666666666666667777777777777777777777777777777777777654433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.49  E-value=5.6  Score=39.92  Aligned_cols=18  Identities=11%  Similarity=0.132  Sum_probs=0.0

Q ss_pred             HHHHhHHHHHHHHHHHHH
Q psy11229        481 RAQSDHQSMVEKLELLQK  498 (705)
Q Consensus       481 ~~~~~~~~l~~k~~~l~~  498 (705)
                      ..+.++..+...-..+..
T Consensus        78 ~l~~ELael~r~~~el~~   95 (194)
T PF08614_consen   78 KLQEELAELYRSKGELAQ   95 (194)
T ss_dssp             ------------------
T ss_pred             cccccccccccccccccc
Confidence            333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.29  E-value=22  Score=45.60  Aligned_cols=93  Identities=30%  Similarity=0.450  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDNV  599 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~  599 (705)
                      .++.......+.+..+++..+.+...+++++..+..++...+.++..+..++..+..++.++   ...++.+++++..++
T Consensus       814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l  893 (1163)
T COG1196         814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL  893 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444555566666666666666666666666665555555555555444444333   444555566666666


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11229        600 RQITKEYSYQQAIIQK  615 (705)
Q Consensus       600 ~~~~~el~l~~~ii~~  615 (705)
                      +.+..++.-...-++.
T Consensus       894 ~~~~~~~~~~~~~~~~  909 (1163)
T COG1196         894 RELESELAELKEEIEK  909 (1163)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6665555444443333

>TIGR00606 rad50 rad50

Probab=90.29  E-value=19  Score=46.73  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE  605 (705)
Q Consensus       569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e  605 (705)
                      .+...+..+..+..++....+.+.+.+...++.+...
T Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  949 (1311)
T TIGR00606       913 PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEK  949 (1311)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444443344444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08084 DNA replication initiation factor; Provisional

Probab=90.29  E-value=0.2  Score=51.82  Aligned_cols=49  Identities=14%  Similarity=0.403  Sum_probs=31.7

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      +..|+||..+..  .+..++..+ ..+..   ......++-||++|+||||.+.+
T Consensus        16 ~~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a   64 (235)
T PRK08084         16 PDDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHA   64 (235)
T ss_pred             CCcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence            345788876654  455566443 33332   22224789999999999999854

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=90.27  E-value=21  Score=42.09  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLELLQK  498 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~~l~~  498 (705)
                      .+.++..++..++.+...+..++.
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~  349 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEA  349 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555444443

>KOG0999|consensus

Probab=90.25  E-value=4.9  Score=45.70  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=17.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcC
Q psy11229        421 DALLIKYQKEISELKKKLEEAS  442 (705)
Q Consensus       421 ~~~l~~~~~ei~~Lk~~l~~~~  442 (705)
                      +..+..|+.+|++|-.+|.+..
T Consensus         7 eq~ve~lr~eierLT~el~q~t   28 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTT   28 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999987654

>PRK06526 transposase; Provisional

Probab=90.25  E-value=0.17  Score=53.19  Aligned_cols=45  Identities=29%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             eceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        101 FDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ||.-+.+.-++..+..-.....++   .+.|  |+.||++|+||||.+.+
T Consensus        73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a  117 (254)
T PRK06526         73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG  117 (254)
T ss_pred             ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence            333344455555555443444443   3444  78899999999999875

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.20  E-value=29  Score=37.09  Aligned_cols=91  Identities=23%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        488 SMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL  567 (705)
Q Consensus       488 ~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l  567 (705)
                      .+..+|..|++.+..     .+++..+...+.....++...+....++...+++.-.+...+.+.+..+-++.+.+.++.
T Consensus       135 ~lvq~I~~L~k~le~-----~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea  209 (294)
T COG1340         135 ELVQKIKELRKELED-----AKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA  209 (294)
T ss_pred             HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544322     122333333334444455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11229        568 KKVSSMLLAAKEERKD  583 (705)
Q Consensus       568 ~~~~~~l~~~~~e~~d  583 (705)
                      ..+..++-.....+..
T Consensus       210 de~he~~ve~~~~~~e  225 (294)
T COG1340         210 DELHEEFVELSKKIDE  225 (294)
T ss_pred             HHHHHHHHHHHHHhHH
Confidence            5444444444433333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.13  E-value=5  Score=42.14  Aligned_cols=72  Identities=18%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE  593 (705)
Q Consensus       522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e  593 (705)
                      ..++.+..+....++.+|+....+...+..+..+++++++....+|+++..++..++..|.+.++-+..+.+
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR  108 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR  108 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555555555555555555555555555555555555555555555555544444444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.12  E-value=26  Score=36.37  Aligned_cols=12  Identities=17%  Similarity=0.578  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHH
Q psy11229        427 YQKEISELKKKL  438 (705)
Q Consensus       427 ~~~ei~~Lk~~l  438 (705)
                      ...++..|..++
T Consensus        34 aE~e~~~l~rri   45 (237)
T PF00261_consen   34 AEAEVASLQRRI   45 (237)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK07952 DNA replication protein DnaC; Validated

Probab=90.05  E-value=0.28  Score=51.19  Aligned_cols=52  Identities=19%  Similarity=0.312  Sum_probs=35.8

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...+||........|..++.. +...++.+..|+. .++-||.+|+||||.+.+
T Consensus        67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a  118 (244)
T PRK07952         67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA  118 (244)
T ss_pred             cCCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence            456788765555566667655 3555666555543 688899999999998854

>KOG4643|consensus

Probab=89.85  E-value=38  Score=41.57  Aligned_cols=64  Identities=16%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSS---MLLAAKEERKDVQRENRKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~---~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el  606 (705)
                      .......+++....+.+|.+.+.++|..+..   ....+.+.+.++ +.+..+...+.+.+..+.++.
T Consensus       528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~l-E~~~~elkk~idaL~alrrhk  594 (1195)
T KOG4643|consen  528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDL-ELIHNELKKYIDALNALRRHK  594 (1195)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555666666666666655544   222233333332 222334444455554555543

>KOG0994|consensus

Probab=89.83  E-value=49  Score=41.28  Aligned_cols=8  Identities=25%  Similarity=0.314  Sum_probs=3.2

Q ss_pred             HHHhhccc
Q psy11229        403 ASRVKKIC  410 (705)
Q Consensus       403 a~rak~I~  410 (705)
                      ..++.++.
T Consensus      1521 ~e~v~sL~ 1528 (1758)
T KOG0994|consen 1521 QERVASLP 1528 (1758)
T ss_pred             HHHHHhcc
Confidence            33444443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.63  E-value=25  Score=35.59  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK  578 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~  578 (705)
                      .+..+.........+++.+..|..|.+.+..++.++..+..++.
T Consensus        84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555666666666666655555555444444

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=89.62  E-value=12  Score=32.16  Aligned_cols=64  Identities=9%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSY  608 (705)
Q Consensus       545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l  608 (705)
                      |...+...+.++....+....++..-.+++..++.-+-++...|..-+..+++.|..|.++|.-
T Consensus        12 Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~   75 (79)
T PF08581_consen   12 EFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444455555566666666777788888888888999999999999999988753

; PDB: 3VP9_B 3VP8_B.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.46  E-value=21  Score=37.25  Aligned_cols=33  Identities=9%  Similarity=0.071  Sum_probs=17.4

Q ss_pred             HHHHHHhcCChHH-----HHHHHhhcccccccCceeec
Q psy11229        609 QQAIIQKFIPTKY-----LELMTQNATWNEDIGEWELK  641 (705)
Q Consensus       609 ~~~ii~~fiP~~~-----~~ki~~~~~wdee~~~W~l~  641 (705)
                      ...+-+.=+|.-|     ++-....+.|.-..+.|+=.
T Consensus       137 ~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~~~~~~  174 (251)
T PF11932_consen  137 RAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIEVYQGT  174 (251)
T ss_pred             HHhhhccCCCHHHHHHHHHHHHHHHHHhCCceeEEEEE
Confidence            3333344355543     44455566676666666643

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.45  E-value=13  Score=43.91  Aligned_cols=18  Identities=39%  Similarity=0.685  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       589 ~~e~e~~~~~~~~~~~el  606 (705)
                      +.++.-.+...|.+.+|+
T Consensus       504 k~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  504 KEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444444

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.43  E-value=0.19  Score=56.97  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             hhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...+..++..-+|.|+.-|+||||||.||+.
T Consensus       247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~  277 (500)
T COG2804         247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA  277 (500)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            3456678889999999999999999999975

>PRK08116 hypothetical protein; Validated

Probab=89.40  E-value=0.22  Score=52.73  Aligned_cols=52  Identities=27%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhC--CCCEEEEEeccCCCCcccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLS--GFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~--G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      -..++||... .+..+...|.. +...++.+.+  +.|..++-||.+||||||.+.
T Consensus        79 ~~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~  132 (268)
T PRK08116         79 FRNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA  132 (268)
T ss_pred             HHhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence            3457888755 45556566654 5666776654  345568999999999999874

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=89.31  E-value=0.22  Score=56.40  Aligned_cols=50  Identities=22%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..|+||.-+-.. ++...|..+ ..+.+. -..||. +|-||++|+||||.|..
T Consensus       100 ~~~tFdnFv~g~-~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a  149 (440)
T PRK14088        100 PDYTFENFVVGP-GNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS  149 (440)
T ss_pred             CCCcccccccCC-chHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence            458999877543 455566543 334432 123675 89999999999998853

>KOG0999|consensus

Probab=89.22  E-value=23  Score=40.55  Aligned_cols=103  Identities=20%  Similarity=0.316  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy11229        519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE---ESEGLSKKLKKVSSMLLAA---KEERKDVQRENRKEI  592 (705)
Q Consensus       519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~---e~~~~~~~l~~~~~~l~~~---~~e~~d~~~e~~~e~  592 (705)
                      ..++.+|.+.+-++..|-....+.+++.+.+++..++|+.   |-+++.-.++++.....-+   -++...+.....+++
T Consensus       152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQl  231 (772)
T KOG0999|consen  152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQL  231 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677788888888999999999999999999888765   4567777777666554333   344445667777888


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcCChHHH
Q psy11229        593 EGFLDNVRQITKE-YSYQQAIIQKFIPTKYL  622 (705)
Q Consensus       593 e~~~~~~~~~~~e-l~l~~~ii~~fiP~~~~  622 (705)
                      |+.++++..-..+ +.|+. =++.++..+.+
T Consensus       232 EEALeTlq~EReqk~alkk-EL~q~~n~e~~  261 (772)
T KOG0999|consen  232 EEALETLQQEREQKNALKK-ELSQYRNAEDI  261 (772)
T ss_pred             HHHHHHHHhHHHHHHHHHH-HHHHhcchhhh
Confidence            8888887543322 22222 24555555443

>KOG0964|consensus

Probab=88.96  E-value=66  Score=39.54  Aligned_cols=108  Identities=18%  Similarity=0.310  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE  593 (705)
Q Consensus       514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e  593 (705)
                      .+..++.++.++.+.-.+..++...+.+...++..+...+.++.++.+.+..+-+.+|.+-+.++..+..+.+...+.-.
T Consensus       416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666677777777777777777888888888888888888888888887777777766554444333


Q ss_pred             HH-----------HHHHHHHHHHHH---HHHHHHHhc-CChHH
Q psy11229        594 GF-----------LDNVRQITKEYS---YQQAIIQKF-IPTKY  621 (705)
Q Consensus       594 ~~-----------~~~~~~~~~el~---l~~~ii~~f-iP~~~  621 (705)
                      .+           +..++++..+++   ..--+++.| +|+.+
T Consensus       496 ~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f  538 (1200)
T KOG0964|consen  496 NLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKF  538 (1200)
T ss_pred             HHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHH
Confidence            33           345667777777   444555655 55544

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.96  E-value=45  Score=37.58  Aligned_cols=40  Identities=20%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      +..+...++.|.+.+...+.|+-+++........|+++|.
T Consensus       396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~  435 (527)
T PF15066_consen  396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM  435 (527)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344444445555544445555555554444444444443

>PRK12704 phosphodiesterase; Provisional

Probab=88.87  E-value=24  Score=41.04  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        560 SEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       560 ~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      ++.+.+.|.+....+...+.++.++
T Consensus       112 L~~re~~Le~re~eLe~~~~~~~~~  136 (520)
T PRK12704        112 LEKKEKELEQKQQELEKKEEELEEL  136 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333343333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.86  E-value=21  Score=45.80  Aligned_cols=80  Identities=14%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEecc-CCCCccccccccCCCC-------CCCCchHHHHHHHH
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQ-TGTGKTFTMEGVNNVP-------ELKGIIPNSFAHIF  169 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGq-TgSGKT~Tm~G~~~~~-------~~~GIipr~~~~lF  169 (705)
                      .=.||.-|=|.++-.-||+.. +      -.|--|||++|-- .|-|=.|-+.+.+-.+       ...++.+.....++
T Consensus        55 rksF~~yYLP~~nSyIIYEY~-R------~~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~  127 (1201)
T PF12128_consen   55 RKSFDDYYLPYSNSYIIYEYQ-R------EDGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELI  127 (1201)
T ss_pred             hhhHHHHcCCCCCceEEEeee-c------cCCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHHH
Confidence            346788787887777777643 2      1476677777744 3334458887754322       11356777788888


Q ss_pred             HhhhhcCCCceEEEEEE
Q psy11229        170 GHIAKADESVKFLVRVS  186 (705)
Q Consensus       170 ~~i~~~~~~~~~~V~vS  186 (705)
                      ..+...  +..++=.++
T Consensus       128 r~~~~~--gv~~S~~i~  142 (1201)
T PF12128_consen  128 RELRRK--GVQVSRKIT  142 (1201)
T ss_pred             HHHHhC--CCeeecCcC
Confidence            877654  444444444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.80  E-value=32  Score=35.65  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKYSSLQEESE  561 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~~~l~~e~~  561 (705)
                      +...|...++.....+.++..|++++.
T Consensus       125 ~E~~Le~aEeR~e~~E~ki~eLE~el~  151 (237)
T PF00261_consen  125 LEQELERAEERAEAAESKIKELEEELK  151 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence            333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.79  E-value=23  Score=33.93  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11229        548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDNVRQITKE  605 (705)
Q Consensus       548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~~~~~~e  605 (705)
                      .+..++..|.++++...++|+....++..+......+   -.....++..+...+..+...
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k  137 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK  137 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4555666666666666666655555555443322221   222233444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.68  E-value=50  Score=43.27  Aligned_cols=12  Identities=42%  Similarity=0.393  Sum_probs=8.6

Q ss_pred             cchhhhhccCCC
Q psy11229        365 KLTRILQDSLGG  376 (705)
Q Consensus       365 kLTrLLqdsLgG  376 (705)
                      .+|+.|++||-.
T Consensus       212 ~i~~fl~~yll~  223 (1486)
T PRK04863        212 AITRSLRDYLLP  223 (1486)
T ss_pred             hHHHHHHHHcCC
Confidence            578888887754

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=88.59  E-value=0.32  Score=55.34  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=32.7

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...|+||...... .+...|.. +..+.+.--..|| .+|-||++|+||||.+..
T Consensus       116 ~~~~tfd~fv~g~-~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a  167 (450)
T PRK00149        116 NPKYTFDNFVVGK-SNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA  167 (450)
T ss_pred             CCCCcccccccCC-CcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence            3568999855333 44455544 3444443223455 478899999999999854

>KOG0977|consensus

Probab=88.55  E-value=21  Score=41.31  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11229        547 IDMEEKYSSLQEESEGLS  564 (705)
Q Consensus       547 ~~~e~~~~~l~~e~~~~~  564 (705)
                      .+++.+.++|.++++.+.
T Consensus       200 ~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  200 VDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            445666666666666665

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.48  E-value=22  Score=36.83  Aligned_cols=78  Identities=22%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT  603 (705)
Q Consensus       524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~  603 (705)
                      .++...+.+.+++.+++.+..|...+.+.+....+++..++.-|+..+.+....+..+..+.+    |..-+.+.|.++.
T Consensus        26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e----ey~~Lk~~in~~R  101 (230)
T PF10146_consen   26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE----EYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            344445566677777777777888888888888888877777777777766666666655544    4555566666666


Q ss_pred             HH
Q psy11229        604 KE  605 (705)
Q Consensus       604 ~e  605 (705)
                      ++
T Consensus       102 ~e  103 (230)
T PF10146_consen  102 KE  103 (230)
T ss_pred             HH
Confidence            66

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=88.31  E-value=0.35  Score=54.18  Aligned_cols=51  Identities=24%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ...|+||.... ...+...|.. +..+...--..+| .+|-||++|+||||.+.
T Consensus       104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~  154 (405)
T TIGR00362       104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH  154 (405)
T ss_pred             CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence            35689998543 2345455643 3444443212245 47789999999999884

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=88.05  E-value=29  Score=42.13  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK  582 (705)
Q Consensus       516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~  582 (705)
                      ..++++..+++............+....++...+...+..+.+..+.+..++..+..++..+..-+.
T Consensus       343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~  409 (775)
T PF10174_consen  343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR  409 (775)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555554445555555555554444444444444444444444444444444433333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.04  E-value=25  Score=33.59  Aligned_cols=51  Identities=24%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK  582 (705)
Q Consensus       532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~  582 (705)
                      .+.|.+.++..+++....+.++....+.+.....+...+..+.+.+..+..
T Consensus        75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~  125 (143)
T PF12718_consen   75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD  125 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence            345555555555555555555555555554444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=88.03  E-value=46  Score=36.62  Aligned_cols=45  Identities=24%  Similarity=0.373  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS  564 (705)
Q Consensus       520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~  564 (705)
                      +..+++....++...|+..+...-+++..+++...+|+.+...++
T Consensus       134 kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666677777666677777777666665554444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=87.93  E-value=43  Score=36.08  Aligned_cols=74  Identities=15%  Similarity=0.286  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK  590 (705)
Q Consensus       517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~  590 (705)
                      .+..+..+|..+.......+.++...-.+..+++.++..+--|.+.+...|......-..+..|+.++++.+..
T Consensus       214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E  287 (306)
T PF04849_consen  214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE  287 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666555555666666666667777777777777777777777766555555566666666655543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=87.92  E-value=57  Score=37.49  Aligned_cols=49  Identities=6%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceee
Q psy11229        592 IEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWEL  640 (705)
Q Consensus       592 ~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l  640 (705)
                      .-+...++..|.|+......+.+.+.-.-+..++.....=......|++
T Consensus       350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~v  398 (498)
T TIGR03007       350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRI  398 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEE
Confidence            3456678888999999999998888877777676655443344566776

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=87.73  E-value=0.45  Score=48.25  Aligned_cols=47  Identities=17%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ..|+||....+  .+..++... +.++   ..+....|+-||++||||||.+.
T Consensus        10 ~~~~~~~~~~~--~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la~   56 (226)
T TIGR03420        10 DDPTFDNFYAG--GNAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLLQ   56 (226)
T ss_pred             CchhhcCcCcC--CcHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence            45888887732  444555543 2222   24567789999999999999874

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.72  E-value=21  Score=35.92  Aligned_cols=57  Identities=25%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK  590 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~  590 (705)
                      ++...+.+.+..+..++++...+..+.+...+.|.++......+++++.+...+|+.
T Consensus       128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS  184 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455566666667777777777777776666653

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=87.66  E-value=47  Score=42.75  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=10.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELLQK  498 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l~~  498 (705)
                      ..+++.+...+..+.++.+++++
T Consensus       606 ~~~l~~~~~~l~~~~~~~~~~e~  628 (1201)
T PF12128_consen  606 RERLEQAEDQLQSAEERQEELEK  628 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.64  E-value=27  Score=42.25  Aligned_cols=41  Identities=15%  Similarity=0.215  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY  553 (705)
Q Consensus       513 ~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~  553 (705)
                      .|-+.+.+++++++..+...+.|.+++++..+....+.+++
T Consensus       576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~  616 (717)
T PF10168_consen  576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV  616 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444433333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4674|consensus

Probab=87.60  E-value=32  Score=45.15  Aligned_cols=18  Identities=11%  Similarity=0.279  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHhhccc
Q psy11229        393 YEETISTLRYASRVKKIC  410 (705)
Q Consensus       393 ~~ETlsTLrfa~rak~I~  410 (705)
                      ...-.+-+.|-.+=+.|.
T Consensus      1148 ~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1148 LSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred             hHHHHHHHHHHHhHHHHH
Confidence            344555666666666553

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.60  E-value=51  Score=36.58  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR----ENRKEIEGFLDNVRQITKEYSYQQAIIQ  614 (705)
Q Consensus       549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~----e~~~e~e~~~~~~~~~~~el~l~~~ii~  614 (705)
                      .+..+..++.++...+..+......+..++.++.....    +...++.++...+..+..++.....-++
T Consensus       201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  270 (423)
T TIGR01843       201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ  270 (423)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444444444444444444433333222    2223344555555555555544444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=87.58  E-value=0.45  Score=52.13  Aligned_cols=21  Identities=43%  Similarity=0.695  Sum_probs=17.8

Q ss_pred             CCCCEEEEEeccCCCCccccc
Q psy11229        128 SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       128 ~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+....++-||++|+|||+++
T Consensus        37 ~~~~~~i~I~G~~GtGKT~l~   57 (365)
T TIGR02928        37 GSRPSNVFIYGKTGTGKTAVT   57 (365)
T ss_pred             CCCCCcEEEECCCCCCHHHHH
Confidence            345678999999999999976

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=87.43  E-value=0.34  Score=55.10  Aligned_cols=50  Identities=22%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .|+||..+...+ +...|.. +..++..-=..|| .+|-||.+|+||||.|..
T Consensus       111 ~~tFdnFv~g~~-n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A  160 (450)
T PRK14087        111 ENTFENFVIGSS-NEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA  160 (450)
T ss_pred             ccchhcccCCCc-HHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence            489998775554 4456633 3444432111345 478899999999999854

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.41  E-value=28  Score=36.59  Aligned_cols=74  Identities=15%  Similarity=0.176  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFL  596 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~  596 (705)
                      +..++.+.....|+++.+..-+....++..-..+..++..++..+.-+.-.|...+..+..+..+..+=+.+++
T Consensus        53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555666555566666555555555555555555555555554444444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=87.22  E-value=0.36  Score=53.78  Aligned_cols=51  Identities=29%  Similarity=0.531  Sum_probs=32.1

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...|+||......+.+ -.|...  .-|...-.+ || -||-||.+|+||||-|..
T Consensus        81 ~~~ytFdnFv~g~~N~-~A~aa~--~~va~~~g~~~n-plfi~G~~GlGKTHLl~A  132 (408)
T COG0593          81 NPKYTFDNFVVGPSNR-LAYAAA--KAVAENPGGAYN-PLFIYGGVGLGKTHLLQA  132 (408)
T ss_pred             CCCCchhheeeCCchH-HHHHHH--HHHHhccCCcCC-cEEEECCCCCCHHHHHHH
Confidence            4569999877665544 333221  122222222 55 588999999999999954

>PRK08939 primosomal protein DnaI; Reviewed

Probab=87.20  E-value=0.36  Score=52.11  Aligned_cols=52  Identities=17%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..+||.+-..+..+..++.. +...++....| ....++-||++|+||||.+.+
T Consensus       123 ~atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A  175 (306)
T PRK08939        123 QASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA  175 (306)
T ss_pred             cCcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence            35666554333356667764 35666665543 233689999999999999865

>KOG2391|consensus

Probab=87.18  E-value=22  Score=38.51  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        590 KEIEGFLDNVRQITKEYSYQQAII  613 (705)
Q Consensus       590 ~e~e~~~~~~~~~~~el~l~~~ii  613 (705)
                      .+++.++.+.|.|.||--+.+...
T Consensus       331 i~l~~yLr~VR~lsReQF~~rat~  354 (365)
T KOG2391|consen  331 IDLDQYLRHVRLLSREQFILRATM  354 (365)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888999999998855554443

>PRK08727 hypothetical protein; Validated

Probab=87.04  E-value=0.37  Score=49.73  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC-EEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN-GTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N-~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..|+||.-+..++.   ....+ ..+    ..|.. -.|+-||++||||||.+..
T Consensus        14 ~~~~f~~f~~~~~n---~~~~~-~~~----~~~~~~~~l~l~G~~G~GKThL~~a   60 (233)
T PRK08727         14 SDQRFDSYIAAPDG---LLAQL-QAL----AAGQSSDWLYLSGPAGTGKTHLALA   60 (233)
T ss_pred             CcCChhhccCCcHH---HHHHH-HHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence            34789987754442   22211 222    12332 3499999999999998753

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=86.99  E-value=0.54  Score=52.15  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=17.5

Q ss_pred             CCCCEEEEEeccCCCCccccc
Q psy11229        128 SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       128 ~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+....++-||++|+|||+++
T Consensus        52 ~~~~~~~lI~G~~GtGKT~l~   72 (394)
T PRK00411         52 GSRPLNVLIYGPPGTGKTTTV   72 (394)
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            345567899999999999986

>KOG0946|consensus

Probab=86.96  E-value=79  Score=38.14  Aligned_cols=39  Identities=21%  Similarity=0.211  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE  580 (705)
Q Consensus       542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e  580 (705)
                      +.++...+..++..+..+.+.++++|.+-.+..++.+..
T Consensus       735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~  773 (970)
T KOG0946|consen  735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKAT  773 (970)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            455666666677777766677777775444444444433

>KOG0243|consensus

Probab=86.75  E-value=40  Score=41.86  Aligned_cols=10  Identities=50%  Similarity=0.710  Sum_probs=7.1

Q ss_pred             CCcccccccc
Q psy11229        142 TGKTFTMEGV  151 (705)
Q Consensus       142 SGKT~Tm~G~  151 (705)
                      +-||||+.+.
T Consensus        93 ~~k~ftFDkV  102 (1041)
T KOG0243|consen   93 IDKTFTFDKV  102 (1041)
T ss_pred             ccceeeccee
Confidence            4689998543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.54  E-value=12  Score=39.27  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ  601 (705)
Q Consensus       525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~  601 (705)
                      +......+.++.......+.++..|..++..++.+++.+++++.+...++..++.+|.++.+....+-+-+.+..|.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555555444444333333333333

>PRK08181 transposase; Validated

Probab=86.52  E-value=0.53  Score=49.84  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=26.7

Q ss_pred             eceeeCCCCChHHHHHhhh-hhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        101 FDTVFDANSKQLDIYNETA-RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       101 FD~Vf~~~~tQ~~Vy~~~~-~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ||.-+.+..+...+..-.. ...++   .|.|  |+-||++|+||||-+.+
T Consensus        80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A  125 (269)
T PRK08181         80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA  125 (269)
T ss_pred             CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence            3434444444444443221 12332   4555  78899999999999865

>KOG0249|consensus

Probab=86.46  E-value=14  Score=43.51  Aligned_cols=48  Identities=13%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229        569 KVSSMLLAAKEERKDV---QRENRKEIEGFLDNVRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       569 ~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~f  616 (705)
                      .+.+++..++..+..+   .+.+....|+|...+.+|.+...-+..++.-|
T Consensus       220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~  270 (916)
T KOG0249|consen  220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDH  270 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcch
Confidence            4444555555544443   34455667777777777775444444444444

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=86.21  E-value=0.39  Score=46.35  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=23.5

Q ss_pred             hHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229        111 QLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       111 Q~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      |.++...+    ++.+-.+ ....++..++||||||++|..
T Consensus         8 Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~~   44 (184)
T PF04851_consen    8 QQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIALA   44 (184)
T ss_dssp             HHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred             HHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence            55555443    4443333 355566788999999999975

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=86.20  E-value=0.55  Score=42.81  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=19.0

Q ss_pred             HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229        122 IVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      +...+.......++.+|++|+|||+++
T Consensus        10 i~~~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          10 LREALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence            333433334556888999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=86.18  E-value=77  Score=37.29  Aligned_cols=13  Identities=23%  Similarity=0.207  Sum_probs=8.2

Q ss_pred             CCh-HHHHHHHhhc
Q psy11229        617 IPT-KYLELMTQNA  629 (705)
Q Consensus       617 iP~-~~~~ki~~~~  629 (705)
                      .|- .++..|+..+
T Consensus       430 ~p~~~el~~l~~~~  443 (582)
T PF09731_consen  430 RPFEDELRALKELA  443 (582)
T ss_pred             CCHHHHHHHHHHhC
Confidence            554 4677777663

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=86.16  E-value=0.42  Score=49.62  Aligned_cols=132  Identities=18%  Similarity=0.355  Sum_probs=73.7

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCE-EEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG-TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~-tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      ....+|...+-+...+.+.+.+     ..++.|..+ .++-||..|||||.++-+                 ++......
T Consensus        22 ~~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka-----------------ll~~y~~~   79 (249)
T PF05673_consen   22 DPIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA-----------------LLNEYADQ   79 (249)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH-----------------HHHHHhhc
Confidence            3456777777766666666554     567777744 367799999999988732                 22222221


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCC-CcEEEccceEEEc-CCHHHHHHHHHhh
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD-IGVYVKDLSAYIA-NNADDMEKIMSLG  253 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~-~gv~v~~l~~~~v-~s~~e~~~ll~~g  253 (705)
                        +      +-.+||..+.+.||-.--.    .+             +..|. --+++.+|+--.- .+...+..+|.-|
T Consensus        80 --G------LRlIev~k~~L~~l~~l~~----~l-------------~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg  134 (249)
T PF05673_consen   80 --G------LRLIEVSKEDLGDLPELLD----LL-------------RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG  134 (249)
T ss_pred             --C------ceEEEECHHHhccHHHHHH----HH-------------hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc
Confidence              1      4567887777665531000    00             11111 1245566652222 2345666666666


Q ss_pred             hccCccccccCCCCCCCceeEEE
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFS  276 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~  276 (705)
                      ...| .....+.+.|.|-|.|-.
T Consensus       135 le~~-P~NvliyATSNRRHLv~E  156 (249)
T PF05673_consen  135 LEAR-PDNVLIYATSNRRHLVPE  156 (249)
T ss_pred             cccC-CCcEEEEEecchhhccch
Confidence            5444 445556677888887653

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=86.16  E-value=59  Score=35.86  Aligned_cols=85  Identities=21%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCccCCCCc-chhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCC
Q psy11229        340 SLSTLGNVISALVDGKCTHIPYRNSK-LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD  418 (705)
Q Consensus       340 SL~aL~~vI~aL~~~~~~hVPyRdSk-LTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~  418 (705)
                      +...||.||..+.|.=.+.|    -| =-+|+  -| -.-.|.+|.+|=...---.-||..|-.+++--          .
T Consensus         8 ~vlvLgGVIA~~gD~ig~kv----GkarLrlF--~L-RPkqTAvlvtvltG~liSA~tLailf~~~~~l----------r   70 (499)
T COG4372           8 FVLVLGGVIAYAGDTIGKKV----GKARLRLF--GL-RPKQTAVLVTVLTGMLISAATLAILFLLNRNL----------R   70 (499)
T ss_pred             HHHHHHhHHHHHhhHHHhhh----hHHHHhHh--cc-CcccceeehhhhhcchhhHHHHHHHHHhhhhH----------H
Confidence            56789999999876210000    00 01111  01 12345566665444333345666665554321          1


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhc
Q psy11229        419 PKDALLIKYQKEISELKKKLEEA  441 (705)
Q Consensus       419 ~~~~~l~~~~~ei~~Lk~~l~~~  441 (705)
                      ..-..+.+++..+..++.+|...
T Consensus        71 ~gVfqlddi~~qlr~~rtel~~a   93 (499)
T COG4372          71 SGVFQLDDIRPQLRALRTELGTA   93 (499)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHH
Confidence            11234566677777777777543

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=86.10  E-value=42  Score=34.17  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=63.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL  556 (705)
Q Consensus       477 ~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l  556 (705)
                      .++..+..++..+.+-+..++...-    .+..+.       +....-++..++-++.|+..+++........+++|..|
T Consensus        69 ~~i~~~~~erdq~~~dL~s~E~sfs----dl~~ry-------ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen   69 AEIQKLLKERDQAYADLNSLEKSFS----DLHKRY-------EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL  137 (207)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555554331    122222       22333344445555666666666666666666777666


Q ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11229        557 QEESE----GLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFI  617 (705)
Q Consensus       557 ~~e~~----~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fi  617 (705)
                      ..-.+    .-...|..+.....+-..-+.......+..+..+..++.+..+|..=+..|+|-.|
T Consensus       138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54432    22222222222222222222233333445566666667777777655555665444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=86.09  E-value=69  Score=37.87  Aligned_cols=13  Identities=0%  Similarity=0.368  Sum_probs=7.5

Q ss_pred             hHHHHHHHHHhhh
Q psy11229        161 IPNSFAHIFGHIA  173 (705)
Q Consensus       161 ipr~~~~lF~~i~  173 (705)
                      +.+.+.-||+.+.
T Consensus        76 ms~LySKL~~EaE   88 (786)
T PF05483_consen   76 MSRLYSKLYKEAE   88 (786)
T ss_pred             HHHHHHHHHHHHH
Confidence            4456666666554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=85.93  E-value=0.68  Score=55.11  Aligned_cols=93  Identities=24%  Similarity=0.321  Sum_probs=57.0

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCc--hHH--HHHHHHHhhhh
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGI--IPN--SFAHIFGHIAK  174 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GI--ipr--~~~~lF~~i~~  174 (705)
                      |....=|.|.-.|..-+..    +++.+-.|.... ..+|.|||||||||...-......-|  .|.  ....|++.+..
T Consensus         2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~   76 (655)
T TIGR00631         2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE   76 (655)
T ss_pred             ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence            4444557777888777754    455555664332 37899999999999764211100111  122  34456666655


Q ss_pred             cCCCceEEEEEEEEEEEcCeee
Q psy11229        175 ADESVKFLVRVSYFEIYNEEIR  196 (705)
Q Consensus       175 ~~~~~~~~V~vS~~EIynE~v~  196 (705)
                      .-++.....+|||+.-|.-+.|
T Consensus        77 f~p~~~V~~f~sy~d~y~pe~y   98 (655)
T TIGR00631        77 FFPENAVEYFVSYYDYYQPEAY   98 (655)
T ss_pred             hCCCCeEEEEeeecccCCcccc
Confidence            4344457788999999987643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=85.83  E-value=0.52  Score=48.16  Aligned_cols=48  Identities=15%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ..|+||..+... .+ .++. .++.++..  .+.+..++-||.+||||||.+.
T Consensus        13 ~~~~~d~f~~~~-~~-~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~   60 (227)
T PRK08903         13 PPPTFDNFVAGE-NA-ELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ   60 (227)
T ss_pred             ChhhhcccccCC-cH-HHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence            458899988332 22 3333 23444432  2345578999999999999874

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.68  E-value=28  Score=39.01  Aligned_cols=89  Identities=12%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF  595 (705)
Q Consensus       516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~  595 (705)
                      +.+....+++++..++...-+++.+..+.++..++..++++..++-.....++++...+.++...+..++.+++.++.-|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555666666666666666655554444444


Q ss_pred             HHHHHHHHH
Q psy11229        596 LDNVRQITK  604 (705)
Q Consensus       596 ~~~~~~~~~  604 (705)
                      -..+.-+.+
T Consensus       118 a~~L~A~~r  126 (420)
T COG4942         118 AEQLAALQR  126 (420)
T ss_pred             HHHHHHHHh
Confidence            444433333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.49  E-value=25  Score=35.76  Aligned_cols=45  Identities=36%  Similarity=0.510  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK  569 (705)
Q Consensus       525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~  569 (705)
                      +++..+..++|...+.+++.+....++++.+|.-|...+..++++
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~  188 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK  188 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333334444444444444444444444444444333333333

>KOG4643|consensus

Probab=85.36  E-value=79  Score=39.03  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=16.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        388 PASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       388 P~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      |...+-+-++..+.|++|+-..+-.
T Consensus       248 ~d~~ykerlmDs~fykdRveelked  272 (1195)
T KOG4643|consen  248 PDTTYKERLMDSDFYKDRVEELKED  272 (1195)
T ss_pred             CCCccchhhhhhHHHHHHHHHHHhh
Confidence            3444556667777888888766543

>KOG1937|consensus

Probab=85.36  E-value=70  Score=36.01  Aligned_cols=15  Identities=27%  Similarity=0.476  Sum_probs=9.5

Q ss_pred             hhcccccccccCCcc
Q psy11229        406 VKKICNKARVNQDPK  420 (705)
Q Consensus       406 ak~I~n~~~~n~~~~  420 (705)
                      +-.+-|.|..|.++.
T Consensus       176 ~~~~l~dpi~~sd~~  190 (521)
T KOG1937|consen  176 CNAVLNDPIPNSDPR  190 (521)
T ss_pred             HHHHhcCcccccchh
Confidence            334556777777764

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.32  E-value=65  Score=38.57  Aligned_cols=16  Identities=38%  Similarity=0.519  Sum_probs=13.5

Q ss_pred             EEEEeccCCCCccccc
Q psy11229        133 TIFAYGQTGTGKTFTM  148 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm  148 (705)
                      +++-+|..|+|||..|
T Consensus        30 ~~~i~G~Ng~GKttll   45 (650)
T TIGR03185        30 IILIGGLNGAGKTTLL   45 (650)
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5567899999999876

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=85.13  E-value=58  Score=34.86  Aligned_cols=58  Identities=21%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML  574 (705)
Q Consensus       517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l  574 (705)
                      .+-.+-++.++.+++..++...+-+.......+.+.+..++.++..+.+.|+.+....
T Consensus       194 ~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~  251 (294)
T COG1340         194 EMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKE  251 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555556555555555555555555555555555554444444333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=85.00  E-value=50  Score=35.70  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHhHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLE  494 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~  494 (705)
                      .+.+.+.++...+.|.+.+-
T Consensus        97 ~q~e~~qL~~qnqkL~nqL~  116 (401)
T PF06785_consen   97 RQQESEQLQSQNQKLKNQLF  116 (401)
T ss_pred             HHHHHHHHHHhHHHHHHHHH
Confidence            33444444444444444443

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=84.92  E-value=0.77  Score=48.18  Aligned_cols=51  Identities=22%  Similarity=0.170  Sum_probs=35.8

Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ++|.|..+-.....+..+|... ..++..+-.|.|  ++-||++|+||||-..+
T Consensus        74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~GKThLa~A  124 (254)
T COG1484          74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGVGKTHLAIA  124 (254)
T ss_pred             CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence            5566665555666777888664 566666654444  56699999999998754

>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal

Probab=84.87  E-value=46  Score=33.52  Aligned_cols=66  Identities=14%  Similarity=0.314  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        546 RIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA  611 (705)
Q Consensus       546 ~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~  611 (705)
                      ...++.++..|..    +...+.+++..+..++..+.....+++.+++.++-.+...|++|++.|....-
T Consensus        84 ~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~  153 (196)
T PF15272_consen   84 SEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNN  153 (196)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344455554444    44666778888888998888888899999999999999999999999875543

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=84.70  E-value=0.76  Score=50.85  Aligned_cols=25  Identities=48%  Similarity=0.674  Sum_probs=18.3

Q ss_pred             HHhhCC-CCEEEEEeccCCCCccccc
Q psy11229        124 DKVLSG-FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       124 ~~vl~G-~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ..++.| --..++.||.||||||.|+
T Consensus        34 ~~~~~~~~p~n~~iyG~~GTGKT~~~   59 (366)
T COG1474          34 APALRGERPSNIIIYGPTGTGKTATV   59 (366)
T ss_pred             HHHhcCCCCccEEEECCCCCCHhHHH
Confidence            333443 3444999999999999886

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=84.70  E-value=49  Score=34.99  Aligned_cols=84  Identities=18%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA-I  612 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~-i  612 (705)
                      .++..++....+...++..+.++..+...+..||++...+|...+..+..++.    =|=.+++.+..++.||+-+.. -
T Consensus       166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~----vRPAfmdEyEklE~EL~~lY~~Y  241 (267)
T PF10234_consen  166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS----VRPAFMDEYEKLEEELQKLYEIY  241 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555555555555555555555555554443    233444444444444432222 2


Q ss_pred             HHhcCChHH
Q psy11229        613 IQKFIPTKY  621 (705)
Q Consensus       613 i~~fiP~~~  621 (705)
                      +.+|--.++
T Consensus       242 ~~kfRNl~y  250 (267)
T PF10234_consen  242 VEKFRNLDY  250 (267)
T ss_pred             HHHHHhHHH
Confidence            444444333

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.52  E-value=49  Score=33.50  Aligned_cols=117  Identities=15%  Similarity=0.315  Sum_probs=65.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy11229        478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL-  556 (705)
Q Consensus       478 ~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l-  556 (705)
                      ++-.++..+......+...+..+.    .+.+........++....++...+....-|...+...+.+...+...+... 
T Consensus        32 Eiv~Lr~ql~e~~~~l~~~~~~~~----~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~  107 (202)
T PF06818_consen   32 EIVSLRAQLRELRAELRNKESQIQ----ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAG  107 (202)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhc
Confidence            344444444444444444443322    112223333344555555665555555555555655555555555555443 


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        557 ----------------------QEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN  598 (705)
Q Consensus       557 ----------------------~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~  598 (705)
                                            ......+...+..+.++|........+....|..||.-|.+.
T Consensus       108 ~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eE  171 (202)
T PF06818_consen  108 RLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEE  171 (202)
T ss_pred             cchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                                  122445666777777788777777777888888888777654

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=84.38  E-value=93  Score=36.63  Aligned_cols=31  Identities=32%  Similarity=0.357  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        553 YSSLQEESEGLSKKLKKVSSMLLAAKEERKD  583 (705)
Q Consensus       553 ~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d  583 (705)
                      |+.++++.+.+.++++.+......+...+..
T Consensus       378 ysel~e~leel~e~leeie~eq~ei~e~l~~  408 (569)
T PRK04778        378 YSELQEELEEILKQLEEIEKEQEKLSEMLQG  408 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555544444444444444444333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.36  E-value=22  Score=38.51  Aligned_cols=123  Identities=26%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY  553 (705)
Q Consensus       474 ~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~  553 (705)
                      ..+.++..+..+......-++.++..     ..........+..+..++++.++..+...+|+.+.++.++++..++++.
T Consensus        13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~-----~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen   13 QLDKQLEQAEKERDTYQEFLKKLEEE-----SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555544421     0111122223334444555555555556666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        554 SSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE  605 (705)
Q Consensus       554 ~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e  605 (705)
                      ..++++.+..-+....+...+.+...+...+..    +.+-..+.+..|.+-
T Consensus        88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~----q~~~~~~~L~~L~kt  135 (314)
T PF04111_consen   88 EELDEEEEEYWREYNELQLELIEFQEERDSLKN----QYEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence            666665544444444444444444444444333    344444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4809|consensus

Probab=84.32  E-value=66  Score=37.02  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=22.5

Q ss_pred             cCCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEe
Q psy11229        240 ANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIET  281 (705)
Q Consensus       240 v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~  281 (705)
                      +.+.......+.....++.+.-..++  +.+||.+|.|..-.
T Consensus       122 i~dlQ~q~k~lqrE~~nlkvelelke--ekLsssMnsIKTFw  161 (654)
T KOG4809|consen  122 LADLQRQAKLLQREEHNLKVELELKE--EKLSSSMNSIKTFW  161 (654)
T ss_pred             hhhhHHHHHHHHHHhhhhhHHHHHHH--HHhcCccccccccc
Confidence            33444445555556666555444433  45778888875543

>KOG4809|consensus

Probab=84.24  E-value=86  Score=36.13  Aligned_cols=70  Identities=27%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR  586 (705)
Q Consensus       517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~  586 (705)
                      .++..+++....+.....++..+.++++...++.+..++|..-...+.++|+.+.--|.+-++|+.++..
T Consensus       332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~  401 (654)
T KOG4809|consen  332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA  401 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666667777777777777777777776666666666666655555555555555543

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.05  E-value=47  Score=36.73  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        536 KKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE-----NRKEIEGFLDNVRQITKEYSYQQ  610 (705)
Q Consensus       536 ~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e-----~~~e~e~~~~~~~~~~~el~l~~  610 (705)
                      -++......+...++++|..+.+-+..++..|.++..+|..+|.++.+.-..     --..+.+.+..++.=.+++-++-
T Consensus       272 ~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  272 IQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3334444555566777777777777777888888777887777777754211     11233444444444444444544


Q ss_pred             HHHHh
Q psy11229        611 AIIQK  615 (705)
Q Consensus       611 ~ii~~  615 (705)
                      .|+++
T Consensus       352 GVleh  356 (359)
T PF10498_consen  352 GVLEH  356 (359)
T ss_pred             heehh
Confidence            44443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0976|consensus

Probab=84.00  E-value=94  Score=37.44  Aligned_cols=16  Identities=19%  Similarity=0.393  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11229        527 HRKQKEEELKKNIQEK  542 (705)
Q Consensus       527 ~~~~~~~~l~~~l~~~  542 (705)
                      +.+.+.+.+...+++.
T Consensus       341 Earrk~egfddk~~eL  356 (1265)
T KOG0976|consen  341 EARRKAEGFDDKLNEL  356 (1265)
T ss_pred             HHHHhhcchhHHHHHH
Confidence            3333333333333333

>TIGR01069 mutS2 MutS2 family protein

Probab=83.95  E-value=20  Score=43.66  Aligned_cols=6  Identities=33%  Similarity=0.529  Sum_probs=3.3

Q ss_pred             CccCCC
Q psy11229        358 HIPYRN  363 (705)
Q Consensus       358 hVPyRd  363 (705)
                      +||...
T Consensus       354 ~Vpa~~  359 (771)
T TIGR01069       354 PIPANE  359 (771)
T ss_pred             CccCCc
Confidence            566544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PLN02939 transferase, transferring glycosyl groups

Probab=83.94  E-value=97  Score=38.63  Aligned_cols=157  Identities=21%  Similarity=0.316  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELLQKKVLVGGEN-----------LLEKAEIQQQLLDAAAQELEHRK---QKEEELKKNIQE  541 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~-----------~~~~~~~q~~~l~~~~~el~~~~---~~~~~l~~~l~~  541 (705)
                      ++-+..+..++..|.+-+..||.++....+.           ..++.+..+.+|+.+..+.++.-   .+...|+.++..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (977)
T PLN02939        256 EERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDK  335 (977)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3444555566667777777788777665443           33455556666665544443322   122334444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy11229        542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS--------------  607 (705)
Q Consensus       542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~--------------  607 (705)
                      .++..... ..|+-.-+.++.++++++.+...++..-+|+....+-++.+.+++.+++..+..|-+              
T Consensus       336 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (977)
T PLN02939        336 LEASLKEA-NVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSE  414 (977)
T ss_pred             HHHHHHHh-hHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHH
Confidence            33322210 011111224466777888888888888888888888888888888888877665522              


Q ss_pred             --------HHHHHHHhcCChHHHHHHHhhcccccc
Q psy11229        608 --------YQQAIIQKFIPTKYLELMTQNATWNED  634 (705)
Q Consensus       608 --------l~~~ii~~fiP~~~~~ki~~~~~wdee  634 (705)
                              .=..+++.+|++++...++ ...|.-|
T Consensus       415 ~~~~lll~id~~~~~~~~~~~~a~~lr-~~~~~~~  448 (977)
T PLN02939        415 FWSRILLLIDGWLLEKKISNNDAKLLR-EMVWKRD  448 (977)
T ss_pred             HHHHHHHHHHHHHHhccCChhhHHHHH-HHHHhhh
Confidence                    1223456778887755544 4455444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.78  E-value=50  Score=33.07  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA  576 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~  576 (705)
                      .|..+....+.+...+...+..||+|...+......+.....+
T Consensus        85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e  127 (193)
T PF14662_consen   85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE  127 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence            3444444445555555555555555554444444433333333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.75  E-value=49  Score=33.17  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy11229        549 MEEKYSSLQEESEGLSKKLK  568 (705)
Q Consensus       549 ~e~~~~~l~~e~~~~~~~l~  568 (705)
                      +-+++..|+.+...++.+|.
T Consensus       108 ~l~~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen  108 LLEELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0964|consensus

Probab=83.70  E-value=91  Score=38.44  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             eccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc------CCCceEEEEEEEEEE
Q psy11229        137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA------DESVKFLVRVSYFEI  190 (705)
Q Consensus       137 YGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~------~~~~~~~V~vS~~EI  190 (705)
                      .|..||||+--+..          |.=.+.+.|.++...      .++..-.|--.|+||
T Consensus        31 VGrNGSGKSNFF~A----------IrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI   80 (1200)
T KOG0964|consen   31 VGRNGSGKSNFFHA----------IRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI   80 (1200)
T ss_pred             ecCCCCCchhhHHH----------hhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence            59999999965532          222344555555321      123344555567777

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=83.61  E-value=1.1e+02  Score=36.84  Aligned_cols=11  Identities=27%  Similarity=0.658  Sum_probs=6.9

Q ss_pred             HHHHHHhhccc
Q psy11229        621 YLELMTQNATW  631 (705)
Q Consensus       621 ~~~ki~~~~~w  631 (705)
                      |++|++..-.|
T Consensus       598 YLkkLE~~~~f  608 (861)
T PF15254_consen  598 YLKKLETNHSF  608 (861)
T ss_pred             HHHhhcccccc
Confidence            67777665544

>PF13245 AAA_19: Part of AAA domain

Probab=83.51  E-value=0.6  Score=39.57  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=18.0

Q ss_pred             HHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229        123 VDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      |...+. -+..+..-|+.|||||+|+.
T Consensus         3 v~~al~-~~~~~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen    3 VRRALA-GSPLFVVQGPPGTGKTTTLA   28 (76)
T ss_pred             HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence            444455 33445559999999999974

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.49  E-value=8.2  Score=37.79  Aligned_cols=10  Identities=10%  Similarity=0.142  Sum_probs=4.8

Q ss_pred             CChHHHHHHH
Q psy11229        617 IPTKYLELMT  626 (705)
Q Consensus       617 iP~~~~~ki~  626 (705)
                      |+++++++|.
T Consensus       142 vs~ee~~~~~  151 (169)
T PF07106_consen  142 VSPEEKEKLE  151 (169)
T ss_pred             CCHHHHHHHH
Confidence            4455554444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=83.48  E-value=21  Score=43.71  Aligned_cols=7  Identities=29%  Similarity=0.392  Sum_probs=4.1

Q ss_pred             CCccCCC
Q psy11229        357 THIPYRN  363 (705)
Q Consensus       357 ~hVPyRd  363 (705)
                      .+||-..
T Consensus       358 ~~vpa~~  364 (782)
T PRK00409        358 LPIPANE  364 (782)
T ss_pred             CCcccCC
Confidence            4666654

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=83.45  E-value=71  Score=34.56  Aligned_cols=9  Identities=11%  Similarity=0.231  Sum_probs=4.3

Q ss_pred             HHHHHHHHH
Q psy11229        488 SMVEKLELL  496 (705)
Q Consensus       488 ~l~~k~~~l  496 (705)
                      -|..||..+
T Consensus        72 llq~kirk~   80 (401)
T PF06785_consen   72 LLQTKIRKI   80 (401)
T ss_pred             HHHHHHHHH
Confidence            345555444

>KOG4674|consensus

Probab=83.41  E-value=1.4e+02  Score=39.63  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELLQKKV  500 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l~~~~  500 (705)
                      ...+...+.+...|.++...|+.-+
T Consensus       695 ~~~ie~~K~e~~tL~er~~~l~~~i  719 (1822)
T KOG4674|consen  695 EKNLELTKEEVETLEERNKNLQSTI  719 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666665543

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=83.39  E-value=61  Score=34.77  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy11229        549 MEEKYSSLQEESEGLSKKLK  568 (705)
Q Consensus       549 ~e~~~~~l~~e~~~~~~~l~  568 (705)
                      ++.+-.++++.+..+..+++
T Consensus       234 le~~~~~~ee~~~~L~ekme  253 (297)
T PF02841_consen  234 LEQQERSYEEHIKQLKEKME  253 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=83.35  E-value=88  Score=37.24  Aligned_cols=140  Identities=21%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy11229        480 KRAQSDHQSMVEKLELLQKKVLVG-GEN--LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK----  552 (705)
Q Consensus       480 ~~~~~~~~~l~~k~~~l~~~~~~~-~~~--~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~----  552 (705)
                      .++-.....|.+.+.+|+.....- +++  +.......+....++...+.+.+.+...++..+..+..+...+.+.    
T Consensus       156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~  235 (617)
T PF15070_consen  156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY  235 (617)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344445556667777776643321 111  2233333344444555555555555556666666665555544432    


Q ss_pred             ----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy11229        553 ----------YSSLQEESEGLSKKLK---KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPT  619 (705)
Q Consensus       553 ----------~~~l~~e~~~~~~~l~---~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~  619 (705)
                                |..+-.+.+.+.+.+-   .+...++.-....+...+....+..+..+.+..+..+.......+.....+
T Consensus       236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~  315 (617)
T PF15070_consen  236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP  315 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence                      2333344444444432   222333332333333334445666666777777777766666666554443

>PRK06835 DNA replication protein DnaC; Validated

Probab=83.18  E-value=0.6  Score=50.91  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             HHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       113 ~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .+++. +...++.+-.+. ..|+-||++|+||||.+.+
T Consensus       167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a  202 (329)
T PRK06835        167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC  202 (329)
T ss_pred             HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence            44533 456777776655 5589999999999998754

>KOG4603|consensus

Probab=83.14  E-value=43  Score=32.81  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy11229        549 MEEKYSSLQEESEGLSKKLKKV  570 (705)
Q Consensus       549 ~e~~~~~l~~e~~~~~~~l~~~  570 (705)
                      |++.+.+|.+++....++|+.+
T Consensus       121 mQe~i~~L~kev~~~~erl~~~  142 (201)
T KOG4603|consen  121 MQEEIQELKKEVAGYRERLKNI  142 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=82.85  E-value=87  Score=35.11  Aligned_cols=103  Identities=14%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK  552 (705)
Q Consensus       473 ~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~  552 (705)
                      .....++...+.....|...++.|+..+...-.          -..+.+.+|--...+.++++..-++-...|+..|.+.
T Consensus       215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~----------~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqe  284 (395)
T PF10267_consen  215 QKILEELREIKESQSRLEESIEKLKEQYQREYQ----------FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQE  284 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667777777777888888877764432111          1122222222222333333444444444444455555


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11229        553 YSSLQEESEGL-SKKLKKVSSMLLAAKEERKDVQ  585 (705)
Q Consensus       553 ~~~l~~e~~~~-~~~l~~~~~~l~~~~~e~~d~~  585 (705)
                      +.++++.++-. ..+.+.+|..+...+..+..++
T Consensus       285 La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  285 LASMEEKMAYQSYERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            54444444332 2334455555555554444444

Its function is unknown.

>KOG0989|consensus

Probab=82.84  E-value=0.93  Score=48.40  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             eceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccc
Q psy11229        101 FDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm  148 (705)
                      |-.=|-|.+.-+-++.+.+..++...+.+ .--..+-||+.|||||.|.
T Consensus        26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta   74 (346)
T KOG0989|consen   26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA   74 (346)
T ss_pred             hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence            33444444444445555444445444444 4445778999999999996

>KOG1962|consensus

Probab=82.78  E-value=17  Score=37.01  Aligned_cols=59  Identities=22%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR  600 (705)
Q Consensus       542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~  600 (705)
                      .+++...+.+....|++|++.++++|++...+..+++....+++.|+.+-.|+...-..
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~  207 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE  207 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            45566667777788888888888888888888888887777777777766665444333

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=82.64  E-value=0.67  Score=56.00  Aligned_cols=31  Identities=13%  Similarity=0.202  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHH-HHhcCChHHHHHHHhh
Q psy11229        598 NVRQITKEYSYQQAI-IQKFIPTKYLELMTQN  628 (705)
Q Consensus       598 ~~~~~~~el~l~~~i-i~~fiP~~~~~ki~~~  628 (705)
                      .+.++-++|.+..+| |+=.||.|.+.+=++.
T Consensus      1069 RV~d~L~eL~~LGIIl~ep~~~~~~~~~~~~~ 1100 (1164)
T PTZ00112       1069 LFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1100 (1164)
T ss_pred             HHHHHHHHHHhcCeEEecCCCchhhhhcccch
Confidence            455666677666666 8888999987775543

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=82.61  E-value=51  Score=37.87  Aligned_cols=17  Identities=29%  Similarity=0.169  Sum_probs=9.7

Q ss_pred             HhhhhHHHHHHHHHHHh
Q psy11229        336 KINLSLSTLGNVISALV  352 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~  352 (705)
                      .|+.||..|.++...++
T Consensus       214 c~~~sl~~l~~~~~k~a  230 (518)
T PF10212_consen  214 CILSSLVSLTNGTGKIA  230 (518)
T ss_pred             HHHHHHHHHHhhhHHHH
Confidence            45556666666555554

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.57  E-value=31  Score=40.16  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=14.9

Q ss_pred             CchHHHHHHHHHhhhhcCCCceEEEEEEEEE
Q psy11229        159 GIIPNSFAHIFGHIAKADESVKFLVRVSYFE  189 (705)
Q Consensus       159 GIipr~~~~lF~~i~~~~~~~~~~V~vS~~E  189 (705)
                      |.|-+....|=+.+....-+....|+=+|-.
T Consensus       164 ~av~~~~reIee~L~~agldyDl~vr~~~gG  194 (652)
T COG2433         164 GAVKRVVREIEEKLDEAGLDYDLEVRESYGG  194 (652)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceeEEeeccCc
Confidence            5556666665555554433333333333333

>PRK06921 hypothetical protein; Provisional

Probab=82.47  E-value=0.94  Score=47.87  Aligned_cols=32  Identities=28%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             hhhHHHHhhC---CCCEEEEEeccCCCCccccccc
Q psy11229        119 ARPIVDKVLS---GFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       119 ~~plV~~vl~---G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      +...++.+-.   +....|+-||++|+||||.+..
T Consensus       102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a  136 (266)
T PRK06921        102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA  136 (266)
T ss_pred             HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence            4455665532   2344678899999999998854

>PRK01156 chromosome segregation protein; Provisional

Probab=82.46  E-value=1.4e+02  Score=37.16  Aligned_cols=16  Identities=25%  Similarity=0.422  Sum_probs=12.9

Q ss_pred             EEEEeccCCCCccccc
Q psy11229        133 TIFAYGQTGTGKTFTM  148 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm  148 (705)
                      ..+-+|++|||||..+
T Consensus        25 i~~I~G~NGsGKSsil   40 (895)
T PRK01156         25 INIITGKNGAGKSSIV   40 (895)
T ss_pred             eEEEECCCCCCHHHHH
Confidence            4567999999999663

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=82.36  E-value=59  Score=32.80  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=9.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229        476 DAELKRAQSDHQSMVEKLELLQK  498 (705)
Q Consensus       476 ~~~~~~~~~~~~~l~~k~~~l~~  498 (705)
                      ..++..++..+....++...++.
T Consensus        67 ~eEvr~Lr~~LR~~q~~~r~~~~   89 (194)
T PF15619_consen   67 NEEVRVLRERLRKSQEQERELER   89 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444433333444444433

>PRK10436 hypothetical protein; Provisional

Probab=82.33  E-value=0.62  Score=53.09  Aligned_cols=29  Identities=34%  Similarity=0.478  Sum_probs=23.9

Q ss_pred             HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .+..++..-+|.|+..|+||||||.||+.
T Consensus       209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a  237 (462)
T PRK10436        209 QFRQALQQPQGLILVTGPTGSGKTVTLYS  237 (462)
T ss_pred             HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence            34556667789999999999999999953

>KOG0018|consensus

Probab=82.31  E-value=67  Score=39.89  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=19.9

Q ss_pred             CCccCCCCcchhh---hhccCCCCcceeeEEeeCCCCCCHHHHHH
Q psy11229        357 THIPYRNSKLTRI---LQDSLGGNSKTVMCATVGPASYNYEETIS  398 (705)
Q Consensus       357 ~hVPyRdSkLTrL---LqdsLgGnskt~mI~~isP~~~~~~ETls  398 (705)
                      .|.--|+++++-+   |+..+-|-- -.||=-|-|...-|+=.++
T Consensus       481 r~e~sR~~~~~eave~lKr~fPgv~-GrviDLc~pt~kkyeiAvt  524 (1141)
T KOG0018|consen  481 RHEGSRRSRKQEAVEALKRLFPGVY-GRVIDLCQPTQKKYEIAVT  524 (1141)
T ss_pred             hcccHHHHHHHHHHHHHHHhCCCcc-chhhhcccccHHHHHHHHH
Confidence            3555566666554   333343322 4555555666444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.17  E-value=48  Score=31.66  Aligned_cols=93  Identities=15%  Similarity=0.283  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN  588 (705)
Q Consensus       509 ~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~  588 (705)
                      ..++..++.+..+..++.........|...|.....+...+...+...++.+..+......+...+.....+...+.++.
T Consensus        45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~  124 (140)
T PF10473_consen   45 LDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEES  124 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666677776666667777777777777777777777777776666666666666666666655555555


Q ss_pred             HHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQ  601 (705)
Q Consensus       589 ~~e~e~~~~~~~~  601 (705)
                      ....+.|....+.
T Consensus       125 ~~~ve~L~~ql~~  137 (140)
T PF10473_consen  125 KSAVEMLQKQLKE  137 (140)
T ss_pred             HHHHHHHHHHHhh
Confidence            5555555544443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.05  E-value=50  Score=39.75  Aligned_cols=70  Identities=24%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL---KKVSSMLLAAKEERKDVQRENRKEIE  593 (705)
Q Consensus       524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l---~~~~~~l~~~~~e~~d~~~e~~~e~e  593 (705)
                      ..+........|+..+.+.......+-.-|+.|.+|+=.+++.+   +.-+-++..+|.|++.+.++..--.-
T Consensus        70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~  142 (717)
T PF09730_consen   70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS  142 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344445666666665555556666777777766666654   34444667777777776665544333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG4673|consensus

Probab=81.91  E-value=1.2e+02  Score=36.02  Aligned_cols=45  Identities=27%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             EeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q psy11229        384 ATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEA  441 (705)
Q Consensus       384 ~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~  441 (705)
                      ..|||....|..-++||.     |++.--        -..-..++.++..||++|...
T Consensus       398 s~~ssl~~e~~QRva~lE-----kKvqa~--------~kERDalr~e~kslk~ela~~  442 (961)
T KOG4673|consen  398 SEVSSLREEYHQRVATLE-----KKVQAL--------TKERDALRREQKSLKKELAAA  442 (961)
T ss_pred             ccccchHHHHHHHHHHHH-----HHHHHH--------HHhHHHHHHHHHHHHHHHHHh
Confidence            457777777777666663     221100        001123667777777777553

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=81.90  E-value=33  Score=41.03  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=10.8

Q ss_pred             ccccHHHHHHhhhhHHHHHHHHH
Q psy11229        327 SGQRLKEASKINLSLSTLGNVIS  349 (705)
Q Consensus       327 ~g~rlkE~~~IN~SL~aL~~vI~  349 (705)
                      .+..+++|..-=.+|..+.+.+.
T Consensus       167 ~~~~l~~Ai~~LlGl~~~~~L~~  189 (650)
T TIGR03185       167 LASLLKEAIEVLLGLDLIDRLAG  189 (650)
T ss_pred             chHHHHHHHHHHhCcHHHHHHHH
Confidence            34456666554344444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.68  E-value=56  Score=32.76  Aligned_cols=19  Identities=16%  Similarity=0.144  Sum_probs=10.1

Q ss_pred             ceeeEEeeCCCCCCHHHHH
Q psy11229        379 KTVMCATVGPASYNYEETI  397 (705)
Q Consensus       379 kt~mI~~isP~~~~~~ETl  397 (705)
                      ....+-.||+.+..-.+.+
T Consensus        18 ~~~~~q~vS~~p~tR~dVi   36 (189)
T PF10211_consen   18 GQLWIQFVSSAPATRQDVI   36 (189)
T ss_pred             CeeeEeeeCCCCCCHHHHH
Confidence            3455666666655444433

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.50  E-value=27  Score=36.91  Aligned_cols=75  Identities=19%  Similarity=0.284  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        527 HRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ  601 (705)
Q Consensus       527 ~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~  601 (705)
                      ......+++++.+.....+...++.++.....|++..+++|+.+++--=+...|-..++.|.+..-+.+....|.
T Consensus       173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN  247 (267)
T PF10234_consen  173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN  247 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445566666777777777777888777788877788877766655555555555555555555555554443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=81.50  E-value=0.67  Score=54.27  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .+..++..-+|.|+..|+||||||.||..
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a  335 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT  335 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence            45566777889999999999999999854

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=81.48  E-value=1.1  Score=50.99  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHh--hCC--CCEEEEEeccCCCCccccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKV--LSG--FNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~v--l~G--~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ...|+||.-+... ++.-.|.. +..+....  ..|  ||. +|-||++|+||||.+..
T Consensus       105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A  160 (445)
T PRK12422        105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA  160 (445)
T ss_pred             CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence            3468999877544 44444533 34444322  223  554 67799999999998853

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=81.39  E-value=0.65  Score=41.85  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=14.9

Q ss_pred             EEEeccCCCCccccccc
Q psy11229        134 IFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       134 IfaYGqTgSGKT~Tm~G  150 (705)
                      ++.+|.||||||+++..
T Consensus         3 ~~i~~~~G~GKT~~~~~   19 (144)
T cd00046           3 VLLAAPTGSGKTLAALL   19 (144)
T ss_pred             EEEECCCCCchhHHHHH
Confidence            57799999999999865

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=81.29  E-value=0.56  Score=42.98  Aligned_cols=18  Identities=28%  Similarity=0.468  Sum_probs=13.1

Q ss_pred             CEEEEEeccCCCCccccc
Q psy11229        131 NGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       131 N~tIfaYGqTgSGKT~Tm  148 (705)
                      ..+++.+|.+|+|||.++
T Consensus         4 ~~~~~i~G~~G~GKT~~~   21 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLI   21 (131)
T ss_dssp             ---EEEEE-TTSSHHHHH
T ss_pred             CcccEEEcCCCCCHHHHH
Confidence            457899999999999876

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=81.11  E-value=78  Score=41.35  Aligned_cols=17  Identities=29%  Similarity=0.608  Sum_probs=13.4

Q ss_pred             EEEEeccCCCCcccccc
Q psy11229        133 TIFAYGQTGTGKTFTME  149 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm~  149 (705)
                      .++--|.+|||||.+|-
T Consensus        26 ~~~~~G~NGsGKS~~ld   42 (1353)
T TIGR02680        26 RLLLRGNNGAGKSKVLE   42 (1353)
T ss_pred             eEEEECCCCCcHHHHHH
Confidence            34557999999999873

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices

Probab=80.78  E-value=40  Score=31.62  Aligned_cols=18  Identities=33%  Similarity=0.589  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHhc
Q psy11229        599 VRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       599 ~~~~~~el~l~~~ii~~f  616 (705)
                      ..+|+++++-+..||++|
T Consensus       102 ~~~L~k~I~~~e~iI~~f  119 (126)
T PF09403_consen  102 LNKLDKEIAEQEQIIDNF  119 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444455555554

; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=80.61  E-value=0.87  Score=52.33  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=24.0

Q ss_pred             HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .+..++..-+|.|+..|+||||||.||..
T Consensus       233 ~l~~~~~~~~GlilitGptGSGKTTtL~a  261 (486)
T TIGR02533       233 RFERLIRRPHGIILVTGPTGSGKTTTLYA  261 (486)
T ss_pred             HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence            44556777788999999999999999953

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>KOG0976|consensus

Probab=80.49  E-value=1.4e+02  Score=36.18  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        519 DAAAQELEHRKQKEEELKKNIQEK  542 (705)
Q Consensus       519 ~~~~~el~~~~~~~~~l~~~l~~~  542 (705)
                      .+.+-+|+....+...+.+.|..+
T Consensus       137 ke~etelE~~~srlh~le~eLsAk  160 (1265)
T KOG0976|consen  137 KENEIEIENLNSRLHKLEDELSAK  160 (1265)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhh
Confidence            334445555554444454444443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.44  E-value=43  Score=40.99  Aligned_cols=12  Identities=17%  Similarity=0.290  Sum_probs=7.6

Q ss_pred             CCccCCCCcchh
Q psy11229        357 THIPYRNSKLTR  368 (705)
Q Consensus       357 ~hVPyRdSkLTr  368 (705)
                      ..+||-|.-+|+
T Consensus       366 ~~i~~~~~i~~~  377 (782)
T PRK00409        366 SEIPVFKEIFAD  377 (782)
T ss_pred             ccccccceEEEe
Confidence            467776666554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=80.40  E-value=1.3e+02  Score=35.70  Aligned_cols=20  Identities=10%  Similarity=0.268  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCh
Q psy11229        600 RQITKEYSYQQAIIQKFIPT  619 (705)
Q Consensus       600 ~~~~~el~l~~~ii~~fiP~  619 (705)
                      ..|.+++-++...+|.+--.
T Consensus       254 e~L~~q~l~Qtql~d~lq~e  273 (617)
T PF15070_consen  254 EELHKQLLQQTQLMDRLQHE  273 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            35666676777777777543

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=80.38  E-value=0.74  Score=48.36  Aligned_cols=18  Identities=44%  Similarity=0.728  Sum_probs=16.2

Q ss_pred             CEEEEEeccCCCCccccc
Q psy11229        131 NGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       131 N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+.|+..|.||||||.+|
T Consensus       127 ~~~ili~G~tGSGKTT~l  144 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLL  144 (270)
T ss_dssp             TEEEEEEESTTSSHHHHH
T ss_pred             ceEEEEECCCccccchHH
Confidence            667888999999999998

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=80.28  E-value=0.73  Score=47.05  Aligned_cols=16  Identities=44%  Similarity=0.733  Sum_probs=13.9

Q ss_pred             EEEEeccCCCCccccc
Q psy11229        133 TIFAYGQTGTGKTFTM  148 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm  148 (705)
                      .+..+|.||||||+|+
T Consensus        25 H~~I~G~TGsGKS~~~   40 (229)
T PF01935_consen   25 HIAIFGTTGSGKSNTV   40 (229)
T ss_pred             eEEEECCCCCCHHHHH
Confidence            4567899999999998

It contains several conserved aspartates and histidines that could be metal ligands.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=80.26  E-value=0.75  Score=46.24  Aligned_cols=19  Identities=37%  Similarity=0.707  Sum_probs=16.7

Q ss_pred             CEEEEEeccCCCCcccccc
Q psy11229        131 NGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       131 N~tIfaYGqTgSGKT~Tm~  149 (705)
                      +|.|+-.|+||||||.++.
T Consensus         1 ~GlilI~GptGSGKTTll~   19 (198)
T cd01131           1 RGLVLVTGPTGSGKSTTLA   19 (198)
T ss_pred             CcEEEEECCCCCCHHHHHH
Confidence            4688999999999999984

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	705
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		1e-127
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		1e-112
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		8e-90
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		5e-77
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		2e-72
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		2e-71
4a1z_A	368	Eg5-1 Length = 368		2e-71
4a28_A	368	Eg5-2 Length = 368		2e-71
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		2e-71
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		2e-71
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		3e-71
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		3e-71
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		2e-69
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		5e-68
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		9e-66
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		5e-65
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		8e-65
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		9e-65
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		2e-63
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		3e-63
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		8e-62
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		9e-62
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-61
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-61
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-60
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		3e-60
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		9e-60
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-57
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		3e-57
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		6e-54
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		2e-53
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		3e-52
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		2e-50
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		3e-50
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		4e-49
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		4e-48
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		7e-48
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-47
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		4e-47
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		5e-47
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		7e-46
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		9e-46
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		9e-46
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		1e-45
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		2e-45
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		6e-45
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		7e-45
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		2e-44
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		9e-44
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		5e-43
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		2e-42
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		5e-42
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		4e-39
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-38
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		3e-36
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		3e-34
3kin_B	117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		3e-18
2kin_B	100	Kinesin (Monomeric) From Rattus Norvegicus Length =		4e-18

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/414 (57%), Positives = 294/414 (71%), Gaps = 63/414 (15%)
Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E+VRV VR RP++ KE                               K  ++D V     
Sbjct: 21  ESVRVVVRCRPMNGKE-------------------------------KAASYDKVVD--- 46
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           VD+  G ++VKNP G+AHE PKTFTFD V+D N+KQ ++Y+ET RP+VD VL GFNGTIF
Sbjct: 47  VDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIF 106
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKT+TMEG+   PE +G+IPNSF HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 107 AYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEI 165
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLLSK++ + LE+KERPD              GVYVKDLS+++  +  ++E +M++GN+
Sbjct: 166 RDLLSKDQTKRLELKERPDT-------------GVYVKDLSSFVTKSVKEIEHVMNVGNQ 212
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           NRSVGAT MNE SSRSHAIF I IE S  GL G              +  +++G+L+LVD
Sbjct: 213 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDG--------------ENHIRVGKLNLVD 258
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKLTR+LQDSL
Sbjct: 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 318
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 428
           GGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL ++Q
Sbjct: 319 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/436 (49%), Positives = 284/436 (65%), Gaps = 85/436 (19%)
Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           E ++V  R RPLS+KE  AGH  I T+D                                
Sbjct: 21  EALKVVARCRPLSRKEEAAGHEQILTMD-------------------------------- 48
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           V L  G +T++NP  +  E PKTFTFD V+DA+SKQ D+Y+ET RP++D VL GFNGT+F
Sbjct: 49  VKL--GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVF 106
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTGTGKT+TM+G    PEL+G+IPN+F HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 107 AYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRS-QNQQYLVRASYLEIYQEEI 165
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLLSK      E  +R       LE+KE P+ GVY+KDLS+++  N  ++E +M+LGN+
Sbjct: 166 RDLLSK------EPGKR-------LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQ 212
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
            R+VG+T MNEVSSRSHAIF I +E S                ++ Q  +++G+L+LVDL
Sbjct: 213 TRAVGSTHMNEVSSRSHAIFIITVECSE-------------RGSDGQDHIRVGKLNLVDL 259
Query: 316 AGSERQAKTG---ASG---------------------QRLKEASKINLSLSTLGNVISAL 351
           AGSERQ K G   A G                     +R KEASKINLSLS LGNVI+AL
Sbjct: 260 AGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAAL 319
Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
              + THIPYR+SKLTR+LQDSLGGN+KT+M AT+GPAS++Y+E++STLR+A+R K I N
Sbjct: 320 AGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKN 379
Query: 412 KARVNQDPKDALLIKY 427
           K RVN+DPKD LL ++
Sbjct: 380 KPRVNEDPKDTLLREF 395

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score =  328 bits (840), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 242/407 (59%), Gaps = 62/407 (15%)
Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +N++V VR RPL+ +E+    ++I  +D  +  + V        +PP+            
Sbjct: 4   DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIV--------DPPEQ----------- 44
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                     +  A  A + P+TFTFD V+D  S    I+  + +P++D VL GFN TIF
Sbjct: 45  ----------EKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIF 94
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTG GKT+TM G    P   G IPNSF H+F  I  +  +  FLV  SY E+YNEEI
Sbjct: 95  AYGQTGAGKTWTMGGNKEEP---GAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDL+  N                 L +KE    G+YV  LS +    A ++  +M  G  
Sbjct: 152 RDLIKNNTK---------------LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFA 196
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR V AT MN+ SSRSH+IF + IE S  +  K                +++G+L+LVDL
Sbjct: 197 NRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEV--------------IRVGKLNLVDL 242
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G  THIPYR+SKLTR+LQDSLG
Sbjct: 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLG 301
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDA 422
           GNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score =  285 bits (730), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/360 (45%), Positives = 221/360 (61%), Gaps = 37/360 (10%)
Query: 72  PYSTVDLLNG---IITVKNP---AGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
           P + V++ +G   I+T + P      + E   +FTFD VFD + KQ DI++ + +P VD 
Sbjct: 16  PQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDD 75
Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHIAKADESVKFLVR 184
           +L+G+NGT+FAYGQTG GK++TM G + + P+ +G+IP     IF  I  +  ++++ VR
Sbjct: 76  ILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVR 135
Query: 185 VSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD 244
           VSY EIY E IRDLL+   D               L V E  + GVYVK L     ++  
Sbjct: 136 VSYMEIYMERIRDLLAPQNDN--------------LPVHEEKNRGVYVKGLLEIYVSSVQ 181
Query: 245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGS 304
           ++ ++M  G   R+V AT MN+ SSRSH+IF I I           T +N        GS
Sbjct: 182 EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI-----------TQKNVE-----TGS 225
Query: 305 VQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
            + G+L LVDLAGSE+  KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+S
Sbjct: 226 AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDS 285
Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
           KLTRILQ+SLGGNS+T +     P+SYN  ET+STLR+  R K I NKA+VN +   A L
Sbjct: 286 KLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score =  270 bits (690), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 175/426 (41%), Positives = 235/426 (55%), Gaps = 71/426 (16%)
Query: 2   SQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEP 61
           SQ   S   + E+ +N++V VRVRP +  E  A    I   D +   ++V+   G A + 
Sbjct: 3   SQPNSSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRT-GGLADKS 61
Query: 62  PKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP 121
            +                                 KT+TFD VF A++KQ+D+Y     P
Sbjct: 62  SR---------------------------------KTYTFDMVFGASTKQIDVYRSVVAP 88
Query: 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE--------LKGIIPNSFAHIFGHIA 173
           I+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E        L GIIP +   IF  + 
Sbjct: 89  ILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPRTLHQIFEKLT 148
Query: 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP--DIGVY 231
             D   +F V+VS  EIYNEE+ DLL+ + D    V ER       L++ + P    GV 
Sbjct: 149 --DNGTEFSVKVSLLEIYNEELFDLLNPSSD----VSER-------LQMFDDPRNKRGVI 195
Query: 232 VKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTT 291
           +K L     +N D++ +I+  G   R+  AT MN  SSRSH++FS+ I        K TT
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM------KETT 249
Query: 292 GENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL 351
            +   L       V++G+L+LVDLAGSE   ++GA  +R +EA  IN SL TLG VI+AL
Sbjct: 250 IDGEEL-------VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
           V+ +  H+PYR SKLTRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I N
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 412 KARVNQ 417
           K  VNQ
Sbjct: 362 KPEVNQ 367

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 63  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 122
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 123 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 176
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 177 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 229
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 230 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 276
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 277 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/332 (47%), Positives = 206/332 (62%), Gaps = 39/332 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN--- 153
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +   
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 154 ------VPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCL 207
                 VP L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D   
Sbjct: 124 EYTWEEVP-LAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD--- 177
Query: 208 EVKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMN 265
            V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN
Sbjct: 178 -VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMN 229
Query: 266 EVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325
             SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++G
Sbjct: 230 AYSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSG 276
Query: 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 385
           A  +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 386 VGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           + PAS N EET+STL YA R K I NK  VNQ
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 124 EYTWEEDPLDGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 55  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 114
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 115 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 168
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 169 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 221
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 222 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 268
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 269 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score =  266 bits (681), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 124 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score =  266 bits (681), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 66  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 125
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 126 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 179
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 180 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 232
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 233 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 279
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 280 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score =  266 bits (680), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 124 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
            PAS N EET+STL YA R K I NK  VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/326 (47%), Positives = 202/326 (61%), Gaps = 37/326 (11%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFAYGQTGTGKTFTMEG  +  E
Sbjct: 49  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 108
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
                   L GIIP +   IF  +   D   +F V+VS  EIYNEE+ DLL+ + D    
Sbjct: 109 EYTWEEDPLAGIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 162
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
           V ER       L++ + P    GV +K L     +N D++ +I+  G   R+  AT MN 
Sbjct: 163 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 215
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
            SSRSH++FS+ I        K TT +   L       V++G+L+LVDLAGSE   ++GA
Sbjct: 216 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 262
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
             +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 263 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 387 GPASYNYEETISTLRYASRVKKICNK 412
            PAS N EET+STL YA R K I NK
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILNK 347

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score =  255 bits (652), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 146/322 (45%), Positives = 194/322 (60%), Gaps = 30/322 (9%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K + FD VF  N+ Q  +YNE A+ IV  VL+G+NGTIFAYGQT +GKT TMEGV     
Sbjct: 51  KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSV 110
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
            +GIIP     IF HI   + +++F ++VSY+EIY ++IRDLL              D+ 
Sbjct: 111 KQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL--------------DVS 156
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L V E  +   YVK  +    ++ +D+ +++  G  NR +  T MNE SSRSH++F 
Sbjct: 157 KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFL 216
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
           I +        K+   EN +  +        G+L+LVDLAGSE+ +KTGA G  L EA  
Sbjct: 217 INV--------KQENLENQKKLS--------GKLYLVDLAGSEKVSKTGAEGTVLDEAKN 260
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
           IN SLS LGNVISAL DG  THIPYR+SKLTRILQ+SLGGN++T +     PAS+N  ET
Sbjct: 261 INKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESET 320
Query: 397 ISTLRYASRVKKICNKARVNQD 418
            STL +  R K + N   VN++
Sbjct: 321 KSTLDFGRRAKTVKNVVCVNEE 342

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score =  248 bits (633), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 146/320 (45%), Positives = 189/320 (59%), Gaps = 31/320 (9%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K + FD VF +++ Q  +YN+ A+ IV  VL G+NGTIFAYGQT +GKT TMEG  + PE
Sbjct: 44  KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
             GIIP     IF +I   DE+++F ++VSYFEIY ++IRDLL  +K             
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L V E  +   YVK  +     + D++   +  G  NR V  T MNE SSRSH+IF 
Sbjct: 153 ---LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
           I ++       +  T    +L          G+L+LVDLAGSE+ +KTGA G  L EA  
Sbjct: 210 INVK-------QENTQTEQKL---------SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
           IN SLS LGNVISAL +G  T++PYR+SK+TRILQDSLGGN +T +     P+SYN  ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKICNKARVN 416
            STL +  R K I N   VN
Sbjct: 313 KSTLLFGQRAKTIKNTVCVN 332

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score =  246 bits (627), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/320 (45%), Positives = 188/320 (58%), Gaps = 31/320 (9%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K + FD VF +++ Q  +YN+ A+ IV  VL G+NGTIFAYGQT +GK  TMEG  + PE
Sbjct: 44  KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
             GIIP     IF +I   DE+++F ++VSYFEIY ++IRDLL              D+ 
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL--------------DVS 149
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L V E  +   YVK  +     + D++   +  G  NR V  T MNE SSRSH+IF 
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
           I ++       +  T    +L          G+L+LVDLAGSE+ +KTGA G  L EA  
Sbjct: 210 INVK-------QENTQTEQKL---------SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
           IN SLS LGNVISAL +G  T++PYR+SK+TRILQDSLGGN +T +     P+SYN  ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKICNKARVN 416
            STL +  R K I N   VN
Sbjct: 313 KSTLLFGQRAKTIKNTVCVN 332

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score =  244 bits (624), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/313 (45%), Positives = 186/313 (59%), Gaps = 31/313 (9%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K + FD VF +++ Q  +YN+ A+ IV  VL G+NGTIFAYGQT +GKT TMEG  + PE
Sbjct: 44  KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
             GIIP     IF +I   DE+++F ++VSYFEIY ++IRDLL  +K             
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L V E  +   YVK  +     + D++   +  G  NR V  T MNE SSRSH+IF 
Sbjct: 153 ---LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
           I ++       +  T    +L          G+L+LVDLAGSE+ +KTGA G  L EA  
Sbjct: 210 INVK-------QENTQTEQKLS---------GKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
           IN SLS LGNVISAL +G  T++PYR+SK+TRILQDSLGGN +T +     P+SYN  ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKI 409
            STL +  R K I
Sbjct: 313 KSTLLFGQRAKTI 325

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score =  244 bits (624), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 161/399 (40%), Positives = 216/399 (54%), Gaps = 62/399 (15%)
Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKN---PAGSAHEPPKTFTFDTVTPYS 74
           V+V VR+RP++++E+D     +  VD    I+   N     G A   PK F +D    + 
Sbjct: 3   VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHC--FW 60
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
           ++D                        ++V +  + Q  ++      I+     G+N  I
Sbjct: 61  SMD------------------------ESVKEKYAGQDIVFKCLGENILQNAFDGYNACI 96
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNE 193
           FAYGQTG+GK++TM G  + P   G+IP   + +F    K  +E   F V VSY EIYNE
Sbjct: 97  FAYGQTGSGKSYTMMGTADQP---GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNE 153
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253
           ++RDLL             P      L+V+E   +G YV  LS     +  D+E +MS G
Sbjct: 154 KVRDLLD------------PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEG 201
Query: 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLV 313
           NK+R+V AT MNE SSRSHA+F I +  +       T+GE            ++G+L LV
Sbjct: 202 NKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE------------KVGKLSLV 249
Query: 314 DLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTR 368
           DLAGSER  KTGA+G RLKE S IN SL+TLG VISAL D      K   +PYR+S LT 
Sbjct: 250 DLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTW 309
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           +L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K
Sbjct: 310 LLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score =  240 bits (613), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 30/328 (9%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K+F FD VF  N    ++Y E A PI+D  + G+NGTIFAYGQT +GKT+TM G     +
Sbjct: 44  KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG---SED 100
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
             G+IP +   IF  I K  +  +FL+RVSY EIYNE I DLL      C   K +P   
Sbjct: 101 HLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLL------CGTQKMKP--- 150
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L ++E  +  VYV DL+  +   ++   K ++ G K+R  G T MN+ SSRSH IF 
Sbjct: 151 ---LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFR 207
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
           +I+E+       R  GE     +  +GSV++  L+LVDLAGSER A+TGA+G RLKE   
Sbjct: 208 MILES-------REKGEP----SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCN 256
Query: 337 INLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
           IN SL  LG VI  L DG+    I YR+SKLTRILQ+SLGGN+KT +  T+ P S  ++E
Sbjct: 257 INRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDE 314
Query: 396 TISTLRYASRVKKICNKARVNQDPKDAL 423
           T++ L++AS  K + N   VN+   D L
Sbjct: 315 TLTALQFASTAKYMKNTPYVNEVSTDEL 342

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score =  239 bits (611), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 223/412 (54%), Gaps = 75/412 (18%)
Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +N++V+VRVRPL+ +E      ++  VD++               P +  T  T+    T
Sbjct: 23  QNIQVYVRVRPLNSRERCIRSAEV--VDVVG--------------PREVVTRHTLDSKLT 66
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                                K FTFD  F   SKQ D+Y+    P++++VL+G+N T+F
Sbjct: 67  ---------------------KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVF 105
Query: 136 AYGQTGTGKTFTMEGVNNVPELK---------GIIPNSFAHIFGHIAKADESVKFLVRVS 186
           AYGQTGTGKT TM G N   ELK         GIIP + +H+F  +   +  V++ +R+S
Sbjct: 106 AYGQTGTGKTHTMVG-NETAELKSSWEDDSDIGIIPRALSHLFDELRMME--VEYTMRIS 162
Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
           Y E+YNEE+ DLLS +        +   I ++    K+     V ++ L     ++ DD+
Sbjct: 163 YLELYNEELCDLLSTD--------DTTKIRIFDDSTKKG---SVIIQGLEEIPVHSKDDV 211
Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
            K++  G + R    T MN  SSRSH +FSI++         R  G       E +  ++
Sbjct: 212 YKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI-------RENG------IEGEDMLK 258
Query: 307 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
           +G+L+LVDLAGSE  +K G   G R++E   IN SL TLG VI+ALVD +  H+PYR SK
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRESK 317
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           LTR+LQ+SLGG +KT + AT+ P   + EET+STL YA R K I NK  VNQ
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score =  235 bits (599), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 159/413 (38%), Positives = 217/413 (52%), Gaps = 69/413 (16%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           +V+V VRVRP + +E       I  + +     T+ NP     E PK+F+FD    YS  
Sbjct: 21  SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 73
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                          +H  P+   +     A+ KQ  +Y +    ++     G+N  IFA
Sbjct: 74  ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 111
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
           YGQTG GK++TM G     + +GIIP     +F  I    ++++ + V VSY EIY E +
Sbjct: 112 YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 170
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           RDLL+ KNK                L V+E P +G YV+DLS     + +D++ +M  GN
Sbjct: 171 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 216
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K R+V AT MNE SSRSHA+F+II            T E            ++ ++ LVD
Sbjct: 217 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 264
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
           LAGSER   TGA G RLKE + IN SL+TLG VISAL +            K   IPYR+
Sbjct: 265 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 324
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
           S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K+I N   VN
Sbjct: 325 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score =  234 bits (598), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 159/413 (38%), Positives = 217/413 (52%), Gaps = 69/413 (16%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           +V+V VRVRP + +E       I  + +     T+ NP     E PK+F+FD    YS  
Sbjct: 5   SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                          +H  P+   +     A+ KQ  +Y +    ++     G+N  IFA
Sbjct: 58  ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
           YGQTG GK++TM G     + +GIIP     +F  I    ++++ + V VSY EIY E +
Sbjct: 96  YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           RDLL+ KNK                L V+E P +G YV+DLS     + +D++ +M  GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K R+V AT MNE SSRSHA+F+II            T E            ++ ++ LVD
Sbjct: 201 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
           LAGSER   TGA G RLKE + IN SL+TLG VISAL +            K   IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
           S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K+I N   VN
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score =  234 bits (597), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 217/414 (52%), Gaps = 69/414 (16%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           +V+V VRVRP + +E       I  + +     T+ NP     E PK+F+FD    YS  
Sbjct: 5   SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                          +H  P+   +     A+ KQ  +Y +    ++     G+N  IFA
Sbjct: 58  ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
           YGQTG GK++TM G     + +GIIP     +F  I    ++++ + V VSY EIY E +
Sbjct: 96  YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           RDLL+ KNK                L V+E P +G YV+DLS     + +D++ +M  GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K R+V AT MNE SSRSHA+F+II            T E            ++ ++ LVD
Sbjct: 201 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
           LAGSER   TGA G RLKE + IN SL+TLG VISAL +            K   IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K+I N   VN 
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 217/414 (52%), Gaps = 69/414 (16%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           +V+V VRVRP + +E       I  + +     T+ NP     E PK+F+FD    YS  
Sbjct: 5   SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                          +H  P+   +     A+ KQ  +Y +    ++     G+N  IFA
Sbjct: 58  ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
           YGQTG GK++TM G     + +GIIP     +F  I    ++++ + V VSY EIY E +
Sbjct: 96  YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           RDLL+ KNK                L V+E P +G YV+DLS     + +D++ +M  GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K R+V AT MNE SSRSHA+F+II            T E            ++ ++ LVD
Sbjct: 201 KPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
           LAGSER   TGA G RLKE + IN SL+TLG VISAL +            K   IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K+I N   VN 
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/320 (43%), Positives = 198/320 (61%), Gaps = 34/320 (10%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           + F F  V   ++ Q  +Y    +P+++    GFN T+FAYGQTG+GKT+TM G  +V  
Sbjct: 50  RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVAS 108
Query: 157 L----KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLL---SKNKDQCLEV 209
           L    +GI+P + A  F  I + D  +  LV VSY E+Y EE RDLL   + ++D  L  
Sbjct: 109 LLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
            ER ++ V C  VKE     V V+ L        D++  ++ +GN  R  GAT +N +SS
Sbjct: 168 DERGNV-VLC-GVKE-----VDVEGL--------DEVLSLLEMGNAARHTGATHLNHLSS 212
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
           RSH +F++ +E      G+  +    RL   A G + + + H VDLAGSER  KTG++G+
Sbjct: 213 RSHTVFTVTLEQR----GRAPS----RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE 264
Query: 330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 387
           RLKE+ +IN SL  LGNVISAL D   + +HIPYR+SK+TRIL+DSLGGN+KTVM A V 
Sbjct: 265 RLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVS 324
Query: 388 PASYNYEETISTLRYASRVK 407
           P+S +++ET++TL YASR +
Sbjct: 325 PSSSDFDETLNTLNYASRAQ 344

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score =  230 bits (586), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 202/353 (57%), Gaps = 59/353 (16%)
Query: 97  KTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149
           K+FTFD  F ++       + Q  +Y+      +D    G++  IFAYGQTG+GK++TM 
Sbjct: 96  KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 150 GVNNVPELKGIIPNSFAHIFGHIAKA-DES--VKFLVRVSYFEIYNEEIRDLLSKNKDQC 206
           G    P+  G+IP +   +F  IA A DE+  + + V+VSYFE+YNE +RDLL+      
Sbjct: 156 GT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAP----- 207
Query: 207 LEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
             V  +P    Y L+V+E P  G YVKDL+       +++ + M +G+ +R+V +T MN+
Sbjct: 208 -VVPNKPP---YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMND 263
Query: 267 VSSRSHAIFSIII-ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325
            SSRSHA+F+I++ +    L    TT  +              R+ LVDLAGSER   T 
Sbjct: 264 TSSRSHAVFTIMLKQIHHDLETDDTTERS-------------SRIRLVDLAGSERAKSTE 310
Query: 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTH---------------------IPYRNS 364
           A+GQRL+E S IN SL+TLG VI+AL D K +                      +PYR+S
Sbjct: 311 ATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDS 370
Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
            LT +L+DSLGGNSKT M A + P   +Y+ET+STLRYA + K+I  +A VNQ
Sbjct: 371 VLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score =  228 bits (581), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 209/403 (51%), Gaps = 52/403 (12%)
Query: 9   VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFD 68
           V E +   +++V VRVRP + KE  AG   +  V +++  I V +P              
Sbjct: 3   VTEEDLCHHMKVVVRVRPENTKEKAAGFHKV--VHVVDKHILVFDPKQEE---------- 50
Query: 69  TVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLS 128
                  V   +G  T              F FD VFD  S Q +++  T +PI+   L+
Sbjct: 51  -------VSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN 103
Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
           G+N T+ AYG TG GKT TM G  + P   G++  +  H++  + +  E       VSY 
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGSADEP---GVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160
Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
           E+YNE+IRDLL         V   P      L V+E    GV V  L+ +   +++++  
Sbjct: 161 EVYNEQIRDLL---------VNSGP------LAVREDTQKGVVVHGLTLHQPKSSEEILH 205
Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
           ++  GNKNR+   T MN  SSRSHA+F I +                   A    +V++ 
Sbjct: 206 LLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK-------------TASINQNVRIA 252
Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKL 366
           ++ L+DLAGSER + +GA G R  E + IN SL  LGNVI+AL D K    HIPYRNSKL
Sbjct: 253 KMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312
Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           TR+L+DSLGGN +T+M A V P+S  Y++T +TL+YA+R K I
Sbjct: 313 TRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/320 (42%), Positives = 194/320 (60%), Gaps = 34/320 (10%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           + F F  V   ++ Q  +Y    +P+++    GFN T+FAYGQTG+GKT+TM G  +V  
Sbjct: 50  RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVAS 108
Query: 157 L----KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLL---SKNKDQCLEV 209
           L    +GI+P + A  F  I + D  +  LV VSY E+Y EE RDLL   + ++D  L  
Sbjct: 109 LLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
            ER ++ V C  VKE     V V+ L        D++  ++ +GN  R  GAT +N +SS
Sbjct: 168 DERGNV-VLC-GVKE-----VDVEGL--------DEVLSLLEMGNAARHTGATHLNHLSS 212
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
           RSH +F++ +        K+      RL   A G + + + H VDLAGSER  KTG++G+
Sbjct: 213 RSHTVFTVTL--------KQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE 264
Query: 330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 387
             KE+ +IN SL  LGNVISAL D   + ++IPYR+SK+TRIL+DSLGGN+KTVM A V 
Sbjct: 265 LRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVS 324
Query: 388 PASYNYEETISTLRYASRVK 407
           P+S +++ET++TL YASR +
Sbjct: 325 PSSSDFDETLNTLNYASRAQ 344

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 198/393 (50%), Gaps = 69/393 (17%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV  RVRP++K++                        G   E     TFD     S +
Sbjct: 5   NIRVIARVRPVTKED------------------------GEGPEATNAVTFDA-DDDSII 39
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
            LL+               P +F  D VF   + Q D++ E  + +V   + GFN  IFA
Sbjct: 40  HLLH------------KGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFA 86
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
           YGQTG GKT+TMEG    P   GI   +   +F  + +     ++ + VS  EIYNE +R
Sbjct: 87  YGQTGAGKTYTMEGTAENP---GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLR 143
Query: 197 DLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256
           DLL K   + LE++  PD               +YV  L+ +   + DD+ K+   G+ N
Sbjct: 144 DLLGKEPQEKLEIRLCPD-----------GSGQLYVPGLTEFQVQSVDDINKVFEFGHTN 192
Query: 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLA 316
           R+   T +NE SSRSHA+  + +       G RTTG                +L+LVDLA
Sbjct: 193 RTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTG----------------KLNLVDLA 236
Query: 317 GSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGG 376
           GSER  K+GA G RL+EA  IN SLS LG+VI+AL   +  H+P+RNSKLT +LQDSL G
Sbjct: 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQDSLSG 295
Query: 377 NSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           +SKT+M   V P   N  ET+ +L++A RV+ +
Sbjct: 296 DSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score =  209 bits (531), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 190/333 (57%), Gaps = 32/333 (9%)
Query: 94  EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN 153
           +  K   +D VFD N+ Q D++ +T + +V   + G+N  IFAYGQTG+GKTFT+ G ++
Sbjct: 44  DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS 102
Query: 154 VPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERP 213
            P   G+ P + + +F  + K      F ++    E+Y + + DLL   + + L+     
Sbjct: 103 NP---GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK----- 154
Query: 214 DIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHA 273
                 L++K+     V V++++    +  ++++ I+  G++ R    T MNE SSRSH 
Sbjct: 155 ------LDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHL 208
Query: 274 IFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333
           I S+IIE+++             L  +A   +  G+L  VDLAGSER  K+G++G +LKE
Sbjct: 209 IVSVIIESTN-------------LQTQA---IARGKLSFVDLAGSERVKKSGSAGNQLKE 252
Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
           A  IN SLS LG+VISAL  G   HIPYRN KLT ++ DSLGGN+KT+M   + PA  N 
Sbjct: 253 AQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNL 311
Query: 394 EETISTLRYASRVKKICNKARVNQDPKDALLIK 426
           +ET ++L YASRV+ I N    N   K+   +K
Sbjct: 312 DETHNSLTYASRVRSIVNDPSKNVSSKEVARLK 344

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 205/394 (52%), Gaps = 71/394 (18%)
Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           +RV+ R+RPL++KES      + T                                 TVD
Sbjct: 15  IRVYCRIRPLNEKESSEREKQMLT---------------------------------TVD 41
Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
                 TV++P     +  K   +D VFD  + Q DI+ +T + +V   + G+N  IFAY
Sbjct: 42  EF----TVEHPW--KDDKRKQHIYDRVFDMRASQDDIFEDT-KYLVQSAVDGYNVCIFAY 94
Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRD 197
           GQTG+GKTFT+ G  + P   G+ P +   +F  + +  +   F ++    E+Y + + D
Sbjct: 95  GQTGSGKTFTIYGHESNP---GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVD 151
Query: 198 LLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
           LL     + L+           LE+K+     V+V++++    +  +++  I+  G++ R
Sbjct: 152 LLLPKSARRLK-----------LEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERR 200
Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317
            V  T MNE SSRSH I S++IE+               +  + Q + + G+L  VDLAG
Sbjct: 201 HVSGTNMNEESSRSHLILSVVIES---------------IDLQTQSAAR-GKLSFVDLAG 244
Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGN 377
           SER  K+G++G +LKEA  IN SLS LG+VI AL  G   HIPYRN KLT ++ DSLGGN
Sbjct: 245 SERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLTMLMSDSLGGN 303
Query: 378 SKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
           +KT+M   V PA  N +ET ++L YASRV+ I N
Sbjct: 304 AKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/314 (40%), Positives = 175/314 (55%), Gaps = 29/314 (9%)
Query: 98  TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPEL 157
           +F  D V    S+ L +Y   A+ +V + L G+NGTI  YGQTG GKT+TM G     + 
Sbjct: 73  SFKLDGVLHDASQDL-VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 158 KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG- 216
           +GI+P +   +F  I +        VRVSY EIYNE + DLLS            P +G 
Sbjct: 132 RGILPRALQQVFRMIEERPTHA-ITVRVSYLEIYNESLFDLLST----------LPYVGP 180
Query: 217 -VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
            V  + + E P  GV++K LS ++ +  +D   ++  G  NR + +  MN+ SSRSH IF
Sbjct: 181 SVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 239
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
           +I +E  S     RT  E   + +         +++LVDLAGSER  K+G+ GQ LKEA+
Sbjct: 240 TIYLEAHS-----RTLSEEKYITS---------KINLVDLAGSERLGKSGSEGQVLKEAT 285
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
            IN SLS L   I AL D K  HIP+R  KLT  L+DSLGGN   V+   +   +   EE
Sbjct: 286 YINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEE 345
Query: 396 TISTLRYASRVKKI 409
           T+S+LR+ASR+K +
Sbjct: 346 TLSSLRFASRMKLV 359

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 209/401 (52%), Gaps = 57/401 (14%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF RVRP+   E               G++   +  G   +PP   +       S  
Sbjct: 23  NIRVFCRVRPVLPGEPTP----------PPGLLLFPSGPGGPSDPPTRLSL------SRS 66
Query: 77  DLLNGIITVKNPAGSAHEPPK-TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           D   G ++     G+   PP+  F+FD VF   S Q +++ E A  +V   L G+   IF
Sbjct: 67  DERRGTLS-----GAPAPPPRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIF 120
Query: 136 AYGQTGTGKTFTMEG-VNNVPELKGIIPNSFAHIFGHIAK--ADESVKFLVRVSYFEIYN 192
           AYGQTG+GKTFTMEG     P+L+G+IP +  H+F  +A+  + +   +    SY EIYN
Sbjct: 121 AYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLF-SVAQELSGQGWTYSFVASYVEIYN 179
Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD-DMEKIMS 251
           E +RDLL+           R   G  C   +  P         + Y+  + + +++ ++ 
Sbjct: 180 ETVRDLLATGT--------RKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLH 231
Query: 252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
           L  +NR+V  TA NE SSRSH++F + I           +GE+      ++G      L 
Sbjct: 232 LARQNRAVARTAQNERSSRSHSVFQLQI-----------SGEH-----SSRGLQCGAPLS 275
Query: 312 LVDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 367
           LVDLAGSER     A G    +RL+E   IN SLSTLG VI AL + K +H+PYRNSKLT
Sbjct: 276 LVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN-KESHVPYRNSKLT 334
Query: 368 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
            +LQ+SLGG++K +M   + P   N  E++++LR+AS+V +
Sbjct: 335 YLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 203/401 (50%), Gaps = 78/401 (19%)
Query: 17  NVRVFVRVRP-LSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           N+RV+ R+RP L  ++ +  H+ +   D  NG   +    G++   P             
Sbjct: 29  NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIP------------- 75
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                                  F FD +FD      +I+ E  + ++   L G+N  IF
Sbjct: 76  -----------------------FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIF 111
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEE 194
           AYGQTG+GKT+TM    +     GI+P +  HIF  I K A     + V   + EIYNE 
Sbjct: 112 AYGQTGSGKTYTMLNPGD-----GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNEN 166
Query: 195 IRDLL------SKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDME 247
           I DLL       +N D+  + K          E++   ++   Y+ +++  + ++ D ++
Sbjct: 167 IVDLLRSGAPSQENNDRNADSKH---------EIRHDQELKTTYITNITTCVLDSRDTVD 217
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
           K++   NK RS  +TA NE SSRSH+IF I +E           G+N     E  G    
Sbjct: 218 KVLKRANKLRSTASTAANEHSSRSHSIFIIHLE-----------GKN-----EGTGEKSQ 261
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 365
           G L+LVDLAGSER   +   G+RL+E   IN SLS LG+VI AL   DG+  HIP+RNSK
Sbjct: 262 GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSK 321
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           LT +LQ SL G+SKT+M   + PA+ +  ETI++LR+AS+V
Sbjct: 322 LTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 204/396 (51%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV++R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 60  NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 97
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 98  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAI 144
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM    +     GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 145 FAYGQTGSGKTFTMLNPGD-----GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNE 199
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +           +   +++M E I+  
Sbjct: 200 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSVKLESEEMVEIILKK 254
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SSRSH+IF I             +G N +  A + G+     L+L
Sbjct: 255 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 298
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 299 VDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLL 358
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 359 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 202/396 (51%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV+ R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 15  NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 52
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 53  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 99
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM     +    GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 100 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 154
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +               +++M E I+  
Sbjct: 155 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 209
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SSRSH+IF I             +G N +  A + G+     L+L
Sbjct: 210 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 253
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 254 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 313
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 314 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 202/396 (51%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV+ R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 3   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 40
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 41  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 87
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM     +    GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 88  FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 142
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +               +++M E I+  
Sbjct: 143 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 197
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SSRSH+IF I             +G N +  A + G+     L+L
Sbjct: 198 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 241
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 242 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 301
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 302 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV+ R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 4   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 42  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM     +    GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 89  FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +               +++M E I+  
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SSRSH+IF I             +G N +  A + G+     L+L
Sbjct: 199 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGS R   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 243 VDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV+ R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 4   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 42  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM     +    GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 89  FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +               +++M E I+  
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SSRSH+IF I             +G N +  A + G+     L+L
Sbjct: 199 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGSER   +   G RL+E   I  SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 243 VDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17  NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
           N+RV+ R+RP  K  + SD   +++   D  +G+ +++                      
Sbjct: 4   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75  TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
                  +  ++N A   HE    F FD +FD     +D++ E  + +V   L G+N  I
Sbjct: 42  -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
           FAYGQTG+GKTFTM     +    GIIP++ +HIF  I K   +   + V   + EIYNE
Sbjct: 89  FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
            I DLL  + +     KE   IG+   E++   +               +++M E I+  
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            NK RS  +TA NE SS SH+IF I             +G N +  A + G+     L+L
Sbjct: 199 ANKLRSTASTASNEHSSASHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
           VDLAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +L
Sbjct: 243 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           Q SL G+SKT+M   + P+S +  ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 170/328 (51%), Gaps = 36/328 (10%)
Query: 93  HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN 152
           H+    + FD  +   S Q DIY  + +PI+  +L G N ++ AYG TG GKT TM G  
Sbjct: 61  HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS- 119
Query: 153 NVPELKGIIPNSFAHIFGHIAKADESVK---FLVRVSYFEIYNEEIRDLLSKNKDQCLEV 209
             PE  G+IP +   +     +     +     V +SY EIY E++ DLL          
Sbjct: 120 --PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL---------- 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
               D     L ++E     + +  LS    ++  D E+     ++NR+VGAT +N+ SS
Sbjct: 168 ----DPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSS 223
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
           RSHA+  + ++    L   R                + G+L+L+DLAGSE   +TG  G 
Sbjct: 224 RSHAVLLVKVDQRERLAPFRQ---------------REGKLYLIDLAGSEDNRRTGNKGL 268
Query: 330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPA 389
           RLKE+  IN SL  LG V+ AL  G    +PYR+SKLTR+LQDSLGG++ +++ A + P 
Sbjct: 269 RLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPE 327
Query: 390 SYNYEETISTLRYASRVKKICNKARVNQ 417
              Y +T+S L +A+R K++ N+   N+
Sbjct: 328 RRFYLDTVSALNFAARSKEVINRPFTNE 355

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 200/391 (51%), Gaps = 72/391 (18%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF R+RP  + E +                              T+T+      STV
Sbjct: 68  NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 98
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           +L +     K+  G      + F+FD VF   S Q DI+ E   P++   L G+N  IFA
Sbjct: 99  ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 152
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKT+TM+GV   PE  G+IP +   +F  I    +   ++ ++ ++ EIYNE +
Sbjct: 153 YGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 209
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLLS N+ + +E++         +    + DI  YV +++     + + +  +M     
Sbjct: 210 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 257
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+  +TA NE SSRSHA+      T   L G+          AE Q  + +G ++LVDL
Sbjct: 258 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 301
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSE    +  +  R+ E   IN SLS L NVI AL+  K  HIPYRNSKLT +L  SLG
Sbjct: 302 AGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 356
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
           GNSKT+M   V P    ++E++ +LR+A+ V
Sbjct: 357 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 387

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 201/392 (51%), Gaps = 72/392 (18%)
Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +N+RVF R+RP  + E +                              T+T+      ST
Sbjct: 59  DNIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DEST 89
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           V+L +     K+  G      + F+FD VF   S Q DI+ E   P++   L G+N  IF
Sbjct: 90  VELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIF 143
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEE 194
           AYGQTG+GKT+TM+GV   PE  G+IP +   +F  I    +   ++ ++ ++ EIYNE 
Sbjct: 144 AYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEV 200
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           + DLLS N+ + +E++         +    + DI  YV +++     + + +  +M    
Sbjct: 201 LYDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAK 248
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
            NR+  +TA NE SSRSHA+      T   L G+          AE Q  + +G ++LVD
Sbjct: 249 MNRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVD 292
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSE    +  +  R+ E   IN SLS L NVI AL+  K  HIPYRNSKLT +L  SL
Sbjct: 293 LAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSL 347
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           GGNSKT+M   V P    ++E++ +LR+A+ V
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASV 379

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 38/311 (12%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           + F+FD VF   S Q DI+ E   P++   L G+N  IFAYGQTG+GKT+TM+GV   PE
Sbjct: 100 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV---PE 155
Query: 157 LKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDI 215
             G+IP +   +F  I    +   ++ ++ ++ EIYNE + DLLS N+ + +E++     
Sbjct: 156 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS-NEQKDMEIR----- 209
Query: 216 GVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
               +    + DI  YV +++     + + +  +M     NR+  +TA NE SSRSHA+ 
Sbjct: 210 ----MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV- 262
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
                T   L G+          AE Q  + +G ++LVDLAGSE    +  +  R+ E  
Sbjct: 263 -----TKLELIGRH---------AEKQ-EISVGSINLVDLAGSE----SPKTSTRMTETK 303
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
            IN SLS L NVI AL+  K  HIPYRNSKLT +L  SLGGNSKT+M   V P    ++E
Sbjct: 304 NINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 362
Query: 396 TISTLRYASRV 406
           ++ +LR+A+ V
Sbjct: 363 SVKSLRFAASV 373

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 200/391 (51%), Gaps = 72/391 (18%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF R+RP  + E +                              T+T+      STV
Sbjct: 57  NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 87
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           +L +     K+  G      + F+FD VF   S Q DI+ E   P++   L G+N  IFA
Sbjct: 88  ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 141
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
           YGQ+G+GKT+TM+GV   PE  G+IP +   +F  I    +   ++ ++ ++ EIYNE +
Sbjct: 142 YGQSGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 198
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLLS N+ + +E++         +    + DI  YV +++     + + +  +M     
Sbjct: 199 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 246
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+  +TA NE SSRSHA+      T   L G+          AE Q  + +G ++LVDL
Sbjct: 247 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 290
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSE    +  +  R+ E   IN SLS L NVI AL+  K  HIPYRNSKLT +L  SLG
Sbjct: 291 AGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
           GNSKT+M   V P    ++E++ +LR+A+ V
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 376

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score =  179 bits (453), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 199/391 (50%), Gaps = 72/391 (18%)
Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF R+RP  + E +                              T+T+      STV
Sbjct: 57  NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 87
Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           +L +     K+  G      + F+FD VF   S Q DI+ E   P++   L G+N  IFA
Sbjct: 88  ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 141
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKT+TM+GV   PE  G+IP +   +F  I    +   ++ ++ ++ EIYNE +
Sbjct: 142 YGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 198
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLLS N+ + +E++         +    + DI  YV +++     + + +  +M     
Sbjct: 199 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 246
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+  +TA NE SSRSHA+      T   L G+          AE Q  + +G ++LVDL
Sbjct: 247 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 290
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSE    +  +  R+ E   I  SLS L NVI AL+  K  HIPYRNSKLT +L  SLG
Sbjct: 291 AGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
           GNSKT+M   V P    ++E++ +LR+A+ V
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 376

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 196/398 (49%), Gaps = 70/398 (17%)
Query: 17  NVRVFVRVRP-LSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           N+RV+ RVRP L  +  D  H+ I   +   G  ++                       T
Sbjct: 6   NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSL-----------------------T 42
Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
           ++   G I   N           F FD +F+ +    +I+ E  R +V   L G+N  IF
Sbjct: 43  INRNEGRILSYN-----------FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIF 90
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADE-SVKFLVRVSYFEIYNEE 194
           AYGQTG+GKT+TM    +     G+IP + +HIF   A   E    + +   Y EIYNE 
Sbjct: 91  AYGQTGSGKTYTMLNAGD-----GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNET 145
Query: 195 IRDLLS--KNKDQCLEV--KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM 250
           I DLL   K+ D   E+   ++ DI        +    G Y+ +++     +   ++ I+
Sbjct: 146 ILDLLRDFKSHDNIDEILDSQKHDIR------HDHEKQGTYITNVTRMKMTSTSQVDTIL 199
Query: 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRL 310
              +K RS  AT  NE SSRSH++F + I      G    TGE              G+L
Sbjct: 200 KKASKMRSTAATRSNERSSRSHSVFMVHIN-----GRNLHTGE-----------TSQGKL 243
Query: 311 HLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTR 368
           +LVDLAGSER   +  +G+RL+E   IN SLS LG+VI AL   D    +IP+RNSKLT 
Sbjct: 244 NLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTY 303
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
           +LQ SL G+SKT+M   + P   +  ET+++LR+AS+V
Sbjct: 304 LLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 171/322 (53%), Gaps = 41/322 (12%)
Query: 99  FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELK 158
           F FD +F+       ++ E ++ ++   L G N  +FAYGQTG+GKTFTM    N     
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN----- 485
Query: 159 GIIPNSFAHIFGHIAKADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGV 217
           G+IP S   IF  I +  E    + VR  + EIYNE I DLL+   D   + + + D   
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHD--- 542
Query: 218 YCLEVKERPDIG--VYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
                    DI     V ++S     + +    I++  NK RS  AT  N+ SSRSH+IF
Sbjct: 543 ---------DIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF 593
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
            I ++  + L  + +                 G L+L+DLAGSER   + A G RLKE  
Sbjct: 594 IIDLQGYNSLTKESS----------------YGTLNLIDLAGSERLNNSRAEGDRLKETQ 637
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
            IN SLS LG+VI +L     +H+PYRNSKLT +L+ SLGGNSKT+M   + P + +  E
Sbjct: 638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNE 697
Query: 396 TISTLRYASRVKKICNKARVNQ 417
           TI++LR+A++V    N  R+N+
Sbjct: 698 TINSLRFATKV----NNTRINK 715

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score =  175 bits (443), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 195/421 (46%), Gaps = 92/421 (21%)
Query: 5   ELSEVAETEEIENVR--VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPP 62
           E S +  T+ IE  R  V VR RPL+K+E     +D+ +V                  P 
Sbjct: 58  ECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISV------------------PS 99
Query: 63  KTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPI 122
           K        P   VDL            + +   + F FD  FD  +    +Y  TARP+
Sbjct: 100 KCLLL-VHEPKLKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPL 146
Query: 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL 182
           V  +  G   T FAYGQTG+GKT TM G     +L G   N+   I+   A A   V  L
Sbjct: 147 VQTIFEGGKATCFAYGQTGSGKTHTMGG-----DLSGKSQNASKGIY---AMASRDVFLL 198
Query: 183 ------------VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGV 230
                       V V++FEIYN ++ DLL+K                  L V E     V
Sbjct: 199 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQV 243
Query: 231 YVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRT 290
            V  L  Y+   ADD+ K++++G+  R+ G T  N  SSRSHA F I++ T   L GK  
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK-- 301
Query: 291 TGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVIS 349
                                LVDLAG+ER A T ++ ++ + E ++IN SL  L   I 
Sbjct: 302 -------------------FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 342
Query: 350 ALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
           AL   K  H P+R SKLT++L+DS +G NS+T M A + P   + E T++TLRYA RVK+
Sbjct: 343 ALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKE 401
Query: 409 I 409
           +
Sbjct: 402 L 402

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 198/421 (47%), Gaps = 92/421 (21%)
Query: 5   ELSEVAETEEIENVR--VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPP 62
           E   +  T+ IE  R  V VR RPL+K+E     +D+ ++                  P 
Sbjct: 38  ECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISI------------------PS 79
Query: 63  KTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPI 122
           K        P   VDL            + +   + F FD  FD  +    +Y  TARP+
Sbjct: 80  KCLLL-VHEPKLKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPL 126
Query: 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL 182
           V  +  G   T FAYGQTG+GKT TM G     +L G   N+   I+   A A   V  L
Sbjct: 127 VQTIFEGGKATCFAYGQTGSGKTHTMGG-----DLSGKAQNASKGIY---AMASRDVFLL 178
Query: 183 ------------VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGV 230
                       V V++FEIYN ++ DLL+K                  L V E     V
Sbjct: 179 KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK---------------LRVLEDGKQQV 223
Query: 231 YVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRT 290
            V  L  ++ N+ADD+ K++ +G+  R+ G T  N  SSRSHA F II+           
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL----------- 272
Query: 291 TGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVIS 349
                     A+G +  G+  LVDLAG+ER A T ++ ++ + E ++IN SL  L   I 
Sbjct: 273 ---------RAKGRMH-GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 322
Query: 350 ALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
           AL   K  H P+R SKLT++L+DS +G NS+T M AT+ P   + E T++TLRYA RVK+
Sbjct: 323 ALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 381
Query: 409 I 409
           +
Sbjct: 382 L 382

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/406 (33%), Positives = 188/406 (46%), Gaps = 90/406 (22%)
Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           + V VR RPL+K+E     +D+ +V                  P K        P   VD
Sbjct: 1   ICVCVRKRPLNKQELAKKEIDVISV------------------PSKCLLL-VHEPKLKVD 41
Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
           L            + +   + F FD  FD  +    +Y  TARP+V  +  G   T FAY
Sbjct: 42  L------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAY 89
Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL------------VRV 185
           GQTG+GKT TM G     +L G   N+   I+   A A   V  L            V V
Sbjct: 90  GQTGSGKTHTMGG-----DLSGKSQNASKGIY---AMASRDVFLLKNQPRYRNLNLEVYV 141
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           ++FEIYN ++ DLL+K                  L V E     V V  L  Y+   ADD
Sbjct: 142 TFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQVQVVGLQEYLVTCADD 186
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
           + K++++G+  R+ G T  N  SSRSHA F I++ T   L GK                 
Sbjct: 187 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK----------------- 229
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
                 LVDLAG+ER A T ++ ++ + E ++IN SL  L   I AL   K  H P+R S
Sbjct: 230 ----FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 284
Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           KLT++L+DS +G NS+T M A + P   + E T++TLRYA RVK++
Sbjct: 285 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 74/396 (18%)
Query: 20  VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLL 79
           V VR RPL+KKE+    +D+ T+   + ++         HEP +            VDL 
Sbjct: 93  VCVRKRPLNKKETQMKDLDVITIPSKDVVM--------VHEPKQK-----------VDL- 132
Query: 80  NGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQ 139
                      + +   +TF FD  FD ++    +Y  TARP+V+ +      T FAYGQ
Sbjct: 133 -----------TRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQ 181
Query: 140 TGTGKTFTMEG---VNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNEEI 195
           TG+GKT TM G     N    KGI   +   +F  + K + + ++  V  ++FEIY+ ++
Sbjct: 182 TGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKV 241
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLL  N+   L V E     V  + ++ER                  +D+ K++ +GN 
Sbjct: 242 FDLL--NRKTKLRVLEDGKQQVQVVGLQERE-------------VKCVEDVLKLIDIGNS 286
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
            R+ G T+ N  SSRSHA+F II+     L GK                       L+DL
Sbjct: 287 CRTSGQTSANAHSSRSHAVFQIILRRKGKLHGK---------------------FSLIDL 325
Query: 316 AGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS- 373
           AG+ER A T ++ ++ + E ++IN SL  L   I AL   K  H P+R SKLT++L+DS 
Sbjct: 326 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSF 384
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           +G NS+T M AT+ P   + E T++TLRYA+RVK++
Sbjct: 385 IGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 153/317 (48%), Gaps = 50/317 (15%)
Query: 99  FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN----V 154
           F FD  F A   Q ++Y     P+VDK+L GF  T  AYGQTGTGK+++M G+      +
Sbjct: 63  FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEIL 121
Query: 155 PELKGIIPNSFAHIFGHIAKADESVKFLVRV--SYFEIYNEEIRDLLSKNKDQCLEVKER 212
           PE  GI+P +   IF  +    E+ K  ++V  S+ EIYNE+  DLL             
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM------- 174
Query: 213 PDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSH 272
           P +   C      P              ++  D+  I+ LG +NR V  T MN  SSRSH
Sbjct: 175 PMVAARCQRCTCLP-------------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSH 221
Query: 273 AIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332
           AI +I +++ +                         R+++VDLAGSE   +TG  G   +
Sbjct: 222 AIVTIHVKSKT----------------------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYN 392
           E   INL L ++  V+ ++  G  T IPYR+S LT +LQ SL   S     A + P   +
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 393 YEETISTLRYASRVKKI 409
             ET+STLR+ +  KK+
Sbjct: 319 LSETLSTLRFGTSAKKL 335

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 151/315 (47%), Gaps = 50/315 (15%)
Query: 99  FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN----V 154
           F FD  F A   Q ++Y     P+VDK+L GF  T  AYGQTGTGK+++M G+      +
Sbjct: 63  FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEIL 121
Query: 155 PELKGIIPNSFAHIFGHIAKADESVKFLVRV--SYFEIYNEEIRDLLSKNKDQCLEVKER 212
           PE  GI+P +   IF  +    E+ K  ++V  S+ EIYNE+  DLL             
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM------- 174
Query: 213 PDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSH 272
           P +   C      P              ++  D+  I+ LG +NR V  T MN  SSRSH
Sbjct: 175 PMVAARCQRCTCLP-------------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSH 221
Query: 273 AIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332
           AI +I +++ +                         R+++VDLAGSE   +TG  G   +
Sbjct: 222 AIVTIHVKSKT----------------------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYN 392
           E   INL L ++  V+ ++  G  T IPYR+S LT +LQ SL   S     A + P   +
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 393 YEETISTLRYASRVK 407
             ET+STLR+ +  K
Sbjct: 319 LSETLSTLRFGTSAK 333

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 124/224 (55%), Gaps = 30/224 (13%)
Query: 97  KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
           K + FD V   N+ Q  +YN  A+ IV  VL G+NGTIFAYGQT +GKT TMEG  + P+
Sbjct: 44  KPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQ 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
           L GIIP     IF HI   DE+++F ++VSYFEIY ++IRDLL  +K             
Sbjct: 104 LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
              L V E  +   YVK  +    ++ +++  ++  G  NR V  T MNE SSRSH+IF 
Sbjct: 153 ---LAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER 320
           I I+  +    K+ +                G+L+LVDLAGSE+
Sbjct: 210 INIKQENVETEKKLS----------------GKLYLVDLAGSEK 237

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/394 (31%), Positives = 183/394 (46%), Gaps = 70/394 (17%)
Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           ++V VR RPLS+ E      DI         ITVKN          T   D   P   VD
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDI---------ITVKNNC--------TLYIDE--PRYKVD 42
Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP-IVDKVLSGFNGTIFA 136
           +   I          HE    F  D VFD       +Y  T +P I+D   +G   + FA
Sbjct: 43  MTKYI--------ERHE----FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90
Query: 137 YGQTGTGKTFTMEGVN--NVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           YGQTG+GKT+TM G       +  GI   +   IF  +   D+     + +S++EIY  +
Sbjct: 91  YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           + DLL K K             V  LE  ++    V VKDL        +++   M  G 
Sbjct: 151 LYDLLQKRK------------MVAALENGKKE---VVVKDLKILRVLTKEELILKMIDGV 195
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
             R +G  + N+ SSRSHAI +I ++                   +   +  +G++  +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLK-------------------DINKNTSLGKIAFID 236
Query: 315 LAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
           LAGSER A T +  ++ + + + IN SL  L   I A+ D    HIP+R+S+LT++L+D 
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-DSDKNHIPFRDSELTKVLRDI 295
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
             G SK++M A + P     E+T++TLRY+SRVK
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329

>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 54/79 (68%)
Query: 338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 397
           N SLS LGNVISAL +G  TH+PYR+SK+TRILQDSLGGN +T +     P+ +N  ET 
Sbjct: 1   NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 398 STLRYASRVKKICNKARVN 416
           STL +  R K I N   VN
Sbjct: 61  STLMFGQRAKTIKNTVSVN 79

>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 55/83 (66%)
Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
           A  IN SLS LGNVISAL +G  TH+PYR+SK+TRILQDSL GN +T +     P+ +N 
Sbjct: 1   AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 394 EETISTLRYASRVKKICNKARVN 416
            ET STL +  R K I N   VN
Sbjct: 61  AETKSTLMFGQRAKTIKNTVSVN 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	705
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	0.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	0.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	0.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	0.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	0.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	0.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	0.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	0.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	0.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	0.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	0.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	0.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	0.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	0.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	0.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	1e-180
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	1e-180
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-177
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	1e-176
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	1e-175
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	1e-173
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-172
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-172
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-172
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-171
3u06_A	412	Protein claret segregational; motor domain, stalk	1e-169
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	3e-55
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	7e-55
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-07
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	8e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	4e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	5e-04

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  577 bits (1490), Expect = 0.0
 Identities = 232/422 (54%), Positives = 291/422 (68%), Gaps = 61/422 (14%)

Query: 7   SEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFT 66
             +      E+VRV VR RP++ KE  A +  +  VD+  G ++VKNP G+AHE PKTFT
Sbjct: 12  ENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFT 71

Query: 67  FDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKV 126
           FD V                                  +D N+KQ ++Y+ET RP+VD V
Sbjct: 72  FDAV----------------------------------YDWNAKQFELYDETFRPLVDSV 97

Query: 127 LSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVS 186
           L GFNGTIFAYGQTGTGKT+TMEG+   PE +G+IPNSF HIF HI++  ++ ++LVR S
Sbjct: 98  LQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRAS 156

Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
           Y EIY EEIRDLLSK++ + LE+KERPD GVY             VKDLS+++  +  ++
Sbjct: 157 YLEIYQEEIRDLLSKDQTKRLELKERPDTGVY-------------VKDLSSFVTKSVKEI 203

Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
           E +M++GN+NRSVGAT MNE SSRSHAIF I IE S              +  + +  ++
Sbjct: 204 EHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECS-------------EVGLDGENHIR 250

Query: 307 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 366
           +G+L+LVDLAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKL
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKL 310

Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 426
           TR+LQDSLGGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL +
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370

Query: 427 YQ 428
           +Q
Sbjct: 371 FQ 372

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  563 bits (1452), Expect = 0.0
 Identities = 156/432 (36%), Positives = 216/432 (50%), Gaps = 72/432 (16%)

Query: 6   LSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTF 65
           +S   E    ++++V  R RPL+  E  AG   +           +              
Sbjct: 1   MSAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----------- 49

Query: 66  TFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
                                          K + FD VF  N+ Q  +YNE A+ IV  
Sbjct: 50  ------------------------------GKVYLFDKVFKPNASQEKVYNEAAKSIVTD 79

Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRV 185
           VL+G+NGTIFAYGQT +GKT TMEGV      +GIIP     IF HI   + +++F ++V
Sbjct: 80  VLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKV 139

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           SY+EIY ++IRDLL  +K                L V E  +   YVK  +    ++ +D
Sbjct: 140 SYYEIYMDKIRDLLDVSKVN--------------LSVHEDKNRVPYVKGATERFVSSPED 185

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
           + +++  G  NR +  T MNE SSRSH++F I ++  +                      
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQ----------------KK 229

Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
             G+L+LVDLAGSE+ +KTGA G  L EA  IN SLS LGNVISAL DG  THIPYR+SK
Sbjct: 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSK 289

Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDP-KDALL 424
           LTRILQ+SLGGN++T +     PAS+N  ET STL +  R K + N   VN++   +   
Sbjct: 290 LTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWK 349

Query: 425 IKYQKEISELKK 436
            +Y+KE  +  +
Sbjct: 350 RRYEKEKEKNAR 361

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  558 bits (1440), Expect = 0.0
 Identities = 165/427 (38%), Positives = 231/427 (54%), Gaps = 74/427 (17%)

Query: 12  TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVT 71
           +    +++V  R RP ++ E ++G   I T    +                         
Sbjct: 2   SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV--------------------- 40

Query: 72  PYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN 131
                               + E   +FTFD VFD + KQ DI++ + +P VD +L+G+N
Sbjct: 41  -------------------DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYN 81

Query: 132 GTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEI 190
           GT+FAYGQTG GK++TM G + + P+ +G+IP     IF  I  +  ++++ VRVSY EI
Sbjct: 82  GTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEI 141

Query: 191 YNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM 250
           Y E IRDLL+   D               L V E  + GVYVK L     ++  ++ ++M
Sbjct: 142 YMERIRDLLAPQNDN--------------LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVM 187

Query: 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRL 310
             G   R+V AT MN+ SSRSH+IF I I   +                   GS + G+L
Sbjct: 188 RRGGNARAVAATNMNQESSRSHSIFVITITQKN----------------VETGSAKSGQL 231

Query: 311 HLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRIL 370
            LVDLAGSE+  KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKLTRIL
Sbjct: 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRIL 291

Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKE 430
           Q+SLGGNS+T +     P+SYN  ET+STLR+  R K I NKA+VN +   A L   ++ 
Sbjct: 292 QESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL---KQM 348

Query: 431 ISELKKK 437
           +++ K +
Sbjct: 349 LAKAKTQ 355

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  555 bits (1432), Expect = 0.0
 Identities = 181/409 (44%), Positives = 237/409 (57%), Gaps = 62/409 (15%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +N++V VR RPL+ +E+    ++I  +D  +  + V  P                     
Sbjct: 4   DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQA------------ 51

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                             + P+TFTFD V+D  S    I+  + +P++D VL GFN TIF
Sbjct: 52  -----------------KKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIF 94

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTG GKT+TM G     E  G IPNSF H+F  I  +  +  FLV  SY E+YNEEI
Sbjct: 95  AYGQTGAGKTWTMGGN---KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDL+  N                 L +KE    G+YV  LS +    A ++  +M  G  
Sbjct: 152 RDLIKNNTK---------------LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFA 196

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR V AT MN+ SSRSH+IF + IE S     +    +           +++G+L+LVDL
Sbjct: 197 NRHVAATQMNDTSSRSHSIFMVRIECS-----EVIENKE---------VIRVGKLNLVDL 242

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G  THIPYR+SKLTR+LQDSLG
Sbjct: 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLG 301

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
           GNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA +
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  551 bits (1423), Expect = 0.0
 Identities = 124/427 (29%), Positives = 187/427 (43%), Gaps = 73/427 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
             VRV VR+RP     + A                                         
Sbjct: 21  ARVRVAVRLRPFVDGTAGASDPPCVRGMD------------------------------- 49

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
               +  + + N     H+    + FD  +   S Q DIY  + +PI+  +L G N ++ 
Sbjct: 50  ----SCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVL 103

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA---DESVKFLVRVSYFEIYN 192
           AYG TG GKT TM G    PE  G+IP +   +     +           V +SY EIY 
Sbjct: 104 AYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQ 160

Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
           E++ DLL                    L ++E     + +  LS    ++  D E+    
Sbjct: 161 EKVLDLLDPASGD--------------LVIREDCRGNILIPGLSQKPISSFADFERHFLP 206

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
            ++NR+VGAT +N+ SSRSHA+  + ++    L                    + G+L+L
Sbjct: 207 ASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP---------------FRQREGKLYL 251

Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQD 372
           +DLAGSE   +TG  G RLKE+  IN SL  LG V+ AL  G    +PYR+SKLTR+LQD
Sbjct: 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQD 310

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEIS 432
           SLGG++ +++ A + P    Y +T+S L +A+R K++ N+   N+  +   L   +    
Sbjct: 311 SLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQK 370

Query: 433 ELKKKLE 439
           EL    E
Sbjct: 371 ELLGPPE 377

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  543 bits (1402), Expect = 0.0
 Identities = 153/416 (36%), Positives = 210/416 (50%), Gaps = 71/416 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
             V V VRVRPL+ +E   G          N +I   +                      
Sbjct: 4   GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDG--------------------- 42

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                                K+F FD VF  N    ++Y E A PI+D  + G+NGTIF
Sbjct: 43  --------------------SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIF 82

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQT +GKT+TM G     +  G+IP +   IF  I K  +  +FL+RVSY EIYNE I
Sbjct: 83  AYGQTASGKTYTMMG---SEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETI 138

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLL   +                L ++E  +  VYV DL+  +   ++   K ++ G K
Sbjct: 139 TDLLCGTQKM------------KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEK 186

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           +R  G T MN+ SSRSH IF +I+E+      ++    N       +GSV++  L+LVDL
Sbjct: 187 SRHYGETKMNQRSSRSHTIFRMILESR-----EKGEPSN------CEGSVKVSHLNLVDL 235

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSL 374
           AGSER A+TGA+G RLKE   IN SL  LG VI  L DG+    I YR+SKLTRILQ+SL
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKE 430
           GGN+KT +  T+ P   +++ET++ L++AS  K + N   VN+   D L   +   
Sbjct: 296 GGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHHH 349

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  538 bits (1388), Expect = 0.0
 Identities = 151/426 (35%), Positives = 209/426 (49%), Gaps = 83/426 (19%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
            +V+V VRVRP + +E       I  +       T+ NP                     
Sbjct: 4   ASVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNPKQPK----------------- 44

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSK--------QLDIYNETARPIVDKVL 127
                             E PK+F+FD  + +++         Q  +Y +    ++    
Sbjct: 45  ------------------ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86

Query: 128 SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVS 186
            G+N  IFAYGQTG GK++TM G     + +GIIP     +F  I    ++++ + V VS
Sbjct: 87  EGYNVCIFAYGQTGAGKSYTMMG-KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVS 145

Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
           Y EIY E +RDLL+                   L V+E P +G YV+DLS     + +D+
Sbjct: 146 YMEIYCERVRDLLNPKNKG-------------NLRVREHPLLGPYVEDLSKLAVTSYNDI 192

Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
           + +M  GNK R+V AT MNE SSRSHA+F+II         KR   E          + +
Sbjct: 193 QDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ------KRHDAET------NITTEK 240

Query: 307 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 355
           + ++ LVDLAGSER   TGA G RLKE + IN SL+TLG VISAL +            K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300

Query: 356 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 415
              IPYR+S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K+I N   V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360

Query: 416 NQDPKD 421
           N     
Sbjct: 361 NHHHHH 366

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  535 bits (1380), Expect = 0.0
 Identities = 165/417 (39%), Positives = 225/417 (53%), Gaps = 71/417 (17%)

Query: 11  ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
           + E+ +N++V VR RP +  E  A    I   D +   ++V+    +     KT+TFD V
Sbjct: 3   KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 62

Query: 71  TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
                                             F A++KQ+D+Y     PI+D+V+ G+
Sbjct: 63  ----------------------------------FGASTKQIDVYRSVVCPILDEVIMGY 88

Query: 131 NGTIFAYGQTGTGKTFTMEGVNNVPE--------LKGIIPNSFAHIFGHIAKADESVKFL 182
           N TIFAYGQTGTGKTFTMEG  +  E        L GIIP +   IF  +   D   +F 
Sbjct: 89  NCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFS 146

Query: 183 VRVSYFEIYNEEIRDLLSKNKDQC--LEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIA 240
           V+VS  EIYNEE+ DLL+ + D    L++ + P               GV +K L     
Sbjct: 147 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN-----------KRGVIIKGLEEITV 195

Query: 241 NNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAE 300
           +N D++ +I+  G   R+  AT MN  SSRSH++FS+ I        K TT +       
Sbjct: 196 HNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM------KETTIDG------ 243

Query: 301 AQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIP 360
            +  V++G+L+LVDLAGSE   ++GA  +R +EA  IN SL TLG VI+ALV+ +  H+P
Sbjct: 244 -EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVP 301

Query: 361 YRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           YR SKLTRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK  VNQ
Sbjct: 302 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  535 bits (1381), Expect = 0.0
 Identities = 146/427 (34%), Positives = 215/427 (50%), Gaps = 73/427 (17%)

Query: 1   MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHE 60
           +S    S   + +  +N++V+VRVRPL+ +E      ++  V     ++T          
Sbjct: 8   ISGGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDS---- 63

Query: 61  PPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETAR 120
                                            +  K FTFD  F   SKQ D+Y+    
Sbjct: 64  ---------------------------------KLTKKFTFDRSFGPESKQCDVYSVVVS 90

Query: 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV--------PELKGIIPNSFAHIFGHI 172
           P++++VL+G+N T+FAYGQTGTGKT TM G                GIIP + +H+F  +
Sbjct: 91  PLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDEL 150

Query: 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYV 232
              +  V++ +R+SY E+YNEE+ DLLS +    + + +                  V +
Sbjct: 151 RMME--VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDST-----------KKGSVII 197

Query: 233 KDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTG 292
           + L     ++ DD+ K++  G + R    T MN  SSRSH +FSI++        +    
Sbjct: 198 QGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI------RENGI 251

Query: 293 ENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISAL 351
           E        +  +++G+L+LVDLAGSE  +K G   G R++E   IN SL TLG VI+AL
Sbjct: 252 EG-------EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304

Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
           VD +  H+PYR SKLTR+LQ+SLGG +KT + AT+ P   + EET+STL YA R K I N
Sbjct: 305 VD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQN 363

Query: 412 KARVNQD 418
           K  VNQ 
Sbjct: 364 KPEVNQK 370

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  529 bits (1364), Expect = 0.0
 Identities = 153/400 (38%), Positives = 204/400 (51%), Gaps = 76/400 (19%)

Query: 10  AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
           A+  E  N++V  R RPL++ E + G   IA     + ++                    
Sbjct: 2   ADLAE-CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI------------------- 41

Query: 70  VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
                                      K + FD VF +++ Q  +YN+ A+ IV  VL G
Sbjct: 42  -------------------------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEG 76

Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFE 189
           +NGTIFAYGQT +GKT TMEG  + PE  GIIP     IF +I   DE+++F ++VSYFE
Sbjct: 77  YNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFE 136

Query: 190 IYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI 249
           IY ++IRDLL  +K                L V E  +   YVK  +     + D++   
Sbjct: 137 IYLDKIRDLLDVSKTN--------------LSVHEDKNRVPYVKGCTERFVCSPDEVMDT 182

Query: 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGR 309
           +  G  NR V  T MNE SSRSH+IF I ++  +                        G+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQEN----------------TQTEQKLSGK 226

Query: 310 LHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRI 369
           L+LVDLAGSE+ +KTGA G  L EA  IN SLS LGNVISAL +G  T++PYR+SK+TRI
Sbjct: 227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRI 285

Query: 370 LQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           LQDSLGGN +T +     P+SYN  ET STL +  R K I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  531 bits (1370), Expect = 0.0
 Identities = 149/462 (32%), Positives = 222/462 (48%), Gaps = 81/462 (17%)

Query: 7   SEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFT 66
           S     +   NVRV VRVR    +E +     I  +D      ++  P  +     +   
Sbjct: 29  SSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADAR--- 85

Query: 67  FDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVF-------DANSKQLDIYNETA 119
                                         K+FTFD  F       +  + Q  +Y+   
Sbjct: 86  --------------------GARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLG 125

Query: 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADE-- 177
              +D    G++  IFAYGQTG+GK++TM G    P+  G+IP +   +F  IA A +  
Sbjct: 126 EEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDET 182

Query: 178 -SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLS 236
            ++ + V+VSYFE+YNE +RDLL+                   L+V+E P  G YVKDL+
Sbjct: 183 PNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY---------LKVRESPTEGPYVKDLT 233

Query: 237 AYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWR 296
                  +++ + M +G+ +R+V +T MN+ SSRSHA+F+I+++            E   
Sbjct: 234 EVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQ------IHHDLET-- 285

Query: 297 LWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC 356
                  + +  R+ LVDLAGSER   T A+GQRL+E S IN SL+TLG VI+AL D K 
Sbjct: 286 ----DDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341

Query: 357 T---------------------HIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
           +                      +PYR+S LT +L+DSLGGNSKT M A + P   +Y+E
Sbjct: 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDE 399

Query: 396 TISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKK 437
           T+STLRYA + K+I  +A VNQ    +   +   +I  +  +
Sbjct: 400 TLSTLRYADQAKRIRTRAVVNQVDGVSAAER-DAQIPSIVHR 440

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  524 bits (1352), Expect = 0.0
 Identities = 139/402 (34%), Positives = 201/402 (50%), Gaps = 68/402 (16%)

Query: 11  ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
              E   VRV +RVRPL  KE   GH     V+   G +T+                   
Sbjct: 6   PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRD---------------- 49

Query: 71  TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
                                     + F F  V   ++ Q  +Y    +P+++    GF
Sbjct: 50  --------------------------RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGF 83

Query: 131 NGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIAKADESVKFLVRVSY 187
           N T+FAYGQTG+GKT+TM   +      + +GI+P + A  F  I + D  +  LV VSY
Sbjct: 84  NATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDL-LDCLVHVSY 142

Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
            E+Y EE RDLL                    ++++E     V +  +        D++ 
Sbjct: 143 LEVYKEEFRDLLE------------VGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190

Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
            ++ +GN  R  GAT +N +SSRSH +F++ +E       +              G + +
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAP--------GQLLV 242

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSK 365
            + H VDLAGSER  KTG++G+RLKE+ +IN SL  LGNVISAL D   + +HIPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302

Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           +TRIL+DSLGGN+KTVM A V P+S +++ET++TL YASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  521 bits (1344), Expect = 0.0
 Identities = 144/403 (35%), Positives = 207/403 (51%), Gaps = 52/403 (12%)

Query: 9   VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFD 68
           V E +   +++V VRVRP + KE  AG   +  V +++  I V +P              
Sbjct: 3   VTEEDLCHHMKVVVRVRPENTKEKAAGFHKV--VHVVDKHILVFDP-------------- 46

Query: 69  TVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLS 128
                  V   +G  T              F FD VFD  S Q +++  T +PI+   L+
Sbjct: 47  ---KQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN 103

Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
           G+N T+ AYG TG GKT TM G     +  G++  +  H++  + +  E       VSY 
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGS---ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160

Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
           E+YNE+IRDLL  +                 L V+E    GV V  L+ +   +++++  
Sbjct: 161 EVYNEQIRDLLVNSGP---------------LAVREDTQKGVVVHGLTLHQPKSSEEILH 205

Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
           ++  GNKNR+   T MN  SSRSHA+F I +                   A    +V++ 
Sbjct: 206 LLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ-------------DKTASINQNVRIA 252

Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKL 366
           ++ L+DLAGSER + +GA G R  E + IN SL  LGNVI+AL D   K  HIPYRNSKL
Sbjct: 253 KMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312

Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           TR+L+DSLGGN +T+M A V P+S  Y++T +TL+YA+R K I
Sbjct: 313 TRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  518 bits (1336), Expect = 0.0
 Identities = 109/413 (26%), Positives = 162/413 (39%), Gaps = 90/413 (21%)

Query: 11  ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
           E  ++  VR+ VR  P  +         +      +G   + +                 
Sbjct: 17  EGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQ---------------- 60

Query: 71  TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
                                       F FD  F A   Q ++Y     P+VDK+L GF
Sbjct: 61  --------------------------NEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94

Query: 131 NGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFGHIAKADES--VKFLVRV 185
             T  AYGQTGTGK+++M        +PE  GI+P +   IF  +    E+      V  
Sbjct: 95  QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYA 154

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           S+ EIYNE+  DLL                          P +    +  +    ++  D
Sbjct: 155 SFIEIYNEKPFDLLGSTP--------------------HMPMVAARCQRCTCLPLHSQAD 194

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
           +  I+ LG +NR V  T MN  SSRSHAI +I +++                        
Sbjct: 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------------------T 232

Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
              R+++VDLAGSE   +TG  G   +E   INL L ++  V+ ++  G  T IPYR+S 
Sbjct: 233 HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSV 291

Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 418
           LT +LQ SL   S     A + P   +  ET+STLR+ +  K    +   +  
Sbjct: 292 LTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHHHH 344

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  517 bits (1333), Expect = e-180
 Identities = 136/425 (32%), Positives = 208/425 (48%), Gaps = 73/425 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
             +RV+ R+RPL +KE  A   +                                     
Sbjct: 5   GKIRVYCRLRPLCEKEIIAKERNAIRSV-------------------------------- 32

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                   TV++      +  K   +D VFD N+ Q D++ +T + +V   + G+N  IF
Sbjct: 33  -----DEFTVEHLWKD--DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF 84

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTG+GKTFT+ G        G+ P + + +F  + K      F ++    E+Y + +
Sbjct: 85  AYGQTGSGKTFTIYGA---DSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTL 141

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLL   + + L+           L++K+     V V++++    +  ++++ I+  G++
Sbjct: 142 VDLLLPKQAKRLK-----------LDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSE 190

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
            R    T MNE SSRSH I S+IIE             N         ++  G+L  VDL
Sbjct: 191 QRHTTGTLMNEQSSRSHLIVSVIIE-----------STN-----LQTQAIARGKLSFVDL 234

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSER  K+G++G +LKEA  IN SLS LG+VISAL  G   HIPYRN KLT ++ DSLG
Sbjct: 235 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLG 293

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK 435
           GN+KT+M   + PA  N +ET ++L YASRV+ I N    N   K+  + + +K +S  K
Sbjct: 294 GNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWK 351

Query: 436 KKLEE 440
           ++   
Sbjct: 352 EQAGR 356

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  515 bits (1330), Expect = e-180
 Identities = 155/409 (37%), Positives = 206/409 (50%), Gaps = 72/409 (17%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
            V+V VR+RP++++E+D     +  VD    I+   N                       
Sbjct: 2   KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNT---------------------- 39

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVF--------DANSKQLDIYNETARPIVDKVLS 128
                        G A   PK F +D  F        +  + Q  ++      I+     
Sbjct: 40  ---------NLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFD 90

Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSY 187
           G+N  IFAYGQTG+GK++TM G     +  G+IP   + +F    K  +E   F V VSY
Sbjct: 91  GYNACIFAYGQTGSGKSYTMMG---TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSY 147

Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
            EIYNE++RDLL     +              L+V+E   +G YV  LS     +  D+E
Sbjct: 148 MEIYNEKVRDLLDPKGSR------------QTLKVREHSVLGPYVDGLSKLAVTSYKDIE 195

Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
            +MS GNK+R+V AT MNE SSRSHA+F I +  +                       ++
Sbjct: 196 SLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT------------LYDVKSGTSGEKV 243

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYR 362
           G+L LVDLAGSER  KTGA+G RLKE S IN SL+TLG VISAL D      K   +PYR
Sbjct: 244 GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYR 303

Query: 363 NSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
           +S LT +L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K   +
Sbjct: 304 DSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  509 bits (1314), Expect = e-177
 Identities = 118/423 (27%), Positives = 181/423 (42%), Gaps = 70/423 (16%)

Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           ++V VR RPLS+ E      DI TV   N  + +  P                     VD
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPR------------------YKVD 42

Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVL-SGFNGTIFA 136
           +   I                F  D VFD       +Y  T +P++  +  +G   + FA
Sbjct: 43  MTKYI------------ERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90

Query: 137 YGQTGTGKTFTMEGVNNV--PELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           YGQTG+GKT+TM G       +  GI   +   IF  +   D+     + +S++EIY  +
Sbjct: 91  YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           + DLL K K                +   E     V VKDL        +++   M  G 
Sbjct: 151 LYDLLQKRKM---------------VAALENGKKEVVVKDLKILRVLTKEELILKMIDGV 195

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
             R +G  + N+ SSRSHAI +I ++                   +   +  +G++  +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLK-------------------DINKNTSLGKIAFID 236

Query: 315 LAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
           LAGSER A T +  ++ + + + IN SL  L   I A+   K  HIP+R+S+LT++L+D 
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDI 295

Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISE 433
             G SK++M A + P     E+T++TLRY+SRVK   N     +   + LL         
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGH 355

Query: 434 LKK 436
              
Sbjct: 356 HHH 358

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  504 bits (1300), Expect = e-176
 Identities = 130/402 (32%), Positives = 190/402 (47%), Gaps = 63/402 (15%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV+ R+RP  K   ++    I   +                                 
Sbjct: 4   NIRVYCRIRPALKNLENSDTSLINVNE--------------------------------F 31

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           D  +G+ +++            F FD +FD     +D++ E    +V   L G+N  IFA
Sbjct: 32  DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFA 90

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKTFTM          GIIP++ +HIF  I K   +   + V   + EIYNE I
Sbjct: 91  YGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENI 145

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDMEKIMSLGN 254
            DLL  + +      +         E++   +     + ++++    + + +E I+   N
Sbjct: 146 VDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKAN 200

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K RS  +TA NE SS SH+IF I +            G N        G+   G L+LVD
Sbjct: 201 KLRSTASTASNEHSSASHSIFIIHLS-----------GSN-----AKTGAHSYGTLNLVD 244

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQD 372
           LAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +LQ 
Sbjct: 245 LAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQY 304

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
           SL G+SKT+M   + P+S +  ET+++LR+AS+V      +R
Sbjct: 305 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  502 bits (1295), Expect = e-175
 Identities = 124/402 (30%), Positives = 181/402 (45%), Gaps = 62/402 (15%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV+ RVRP    E       +                                     
Sbjct: 6   NIRVYCRVRPPLLNEPQDMSHIL---------------------------------IEKF 32

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           +   G  ++             F FD +F+ +    +I+ E  R +V   L G+N  IFA
Sbjct: 33  NEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFA 91

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKT+TM          G+IP + +HIF   A   +    + +   Y EIYNE I
Sbjct: 92  YGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETI 146

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVK-ERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
            DLL   K           +     +++ +    G Y+ +++     +   ++ I+   +
Sbjct: 147 LDLLRDFKSH---DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKAS 203

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K RS  AT  NE SSRSH++F + I            G N        G    G+L+LVD
Sbjct: 204 KMRSTAATRSNERSSRSHSVFMVHIN-----------GRN-----LHTGETSQGKLNLVD 247

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRILQD 372
           LAGSER   +  +G+RL+E   IN SLS LG+VI AL   D    +IP+RNSKLT +LQ 
Sbjct: 248 LAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQY 307

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
           SL G+SKT+M   + P   +  ET+++LR+AS+V       R
Sbjct: 308 SLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAKR 349

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  500 bits (1290), Expect = e-173
 Identities = 129/414 (31%), Positives = 190/414 (45%), Gaps = 74/414 (17%)

Query: 10  AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
            +  E   + V VR RPL+K+E     +D+ +V     ++ V  P               
Sbjct: 65  TDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPK-------------- 109

Query: 70  VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
                 VDL            + +   + F FD  FD  +    +Y  TARP+V  +  G
Sbjct: 110 ----LKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEG 153

Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIAKA-DESVKFLVRV 185
              T FAYGQTG+GKT TM G  +       KGI   +   +F    +    ++   V V
Sbjct: 154 GKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYV 213

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           ++FEIYN ++ DLL+K                  L V E     V V  L  Y+   ADD
Sbjct: 214 TFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQVQVVGLQEYLVTCADD 258

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
           + K++++G+  R+ G T  N  SSRSHA F I++                          
Sbjct: 259 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLR---------------------TKGR 297

Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
             G+  LVDLAG+ER A T ++ ++ + E ++IN SL  L   I AL   K  H P+R S
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 356

Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
           KLT++L+DS +G NS+T M A + P   + E T++TLRYA RVK++ +    + 
Sbjct: 357 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHHH 410

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  495 bits (1276), Expect = e-172
 Identities = 136/394 (34%), Positives = 195/394 (49%), Gaps = 71/394 (18%)

Query: 17  NVRVFVRVRPLSKKESDAGH-VDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           N+RV  RVRP++K++ +     +  T D  +  I      G                   
Sbjct: 5   NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKG------------------- 45

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                               P +F  D VF   + Q D++ E  + +V   + GFN  IF
Sbjct: 46  -------------------KPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIF 85

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
           AYGQTG GKT+TMEG     E  GI   +   +F  + +     ++ + VS  EIYNE +
Sbjct: 86  AYGQTGAGKTYTMEGT---AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVL 142

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
           RDLL K   + LE++  PD               +YV  L+ +   + DD+ K+   G+ 
Sbjct: 143 RDLLGKEPQEKLEIRLCPD-----------GSGQLYVPGLTEFQVQSVDDINKVFEFGHT 191

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+   T +NE SSRSHA+  + +            G +      + G    G+L+LVDL
Sbjct: 192 NRTTEFTNLNEHSSRSHALLIVTVR-----------GVD-----CSTGLRTTGKLNLVDL 235

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           AGSER  K+GA G RL+EA  IN SLS LG+VI+AL   +  H+P+RNSKLT +LQDSL 
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLS 294

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           G+SKT+M   V P   N  ET+ +L++A RV+ +
Sbjct: 295 GDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  496 bits (1279), Expect = e-172
 Identities = 130/410 (31%), Positives = 190/410 (46%), Gaps = 74/410 (18%)

Query: 10  AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
            +  E   + V VR RPL+K+E     +D+ ++     ++ V  P               
Sbjct: 45  TDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPK-------------- 89

Query: 70  VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
                 VDL            + +   + F FD  FD  +    +Y  TARP+V  +  G
Sbjct: 90  ----LKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEG 133

Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNVP---ELKGIIPNSFAHIFGHIAKA-DESVKFLVRV 185
              T FAYGQTG+GKT TM G  +       KGI   +   +F    +     +   V V
Sbjct: 134 GKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYV 193

Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
           ++FEIYN ++ DLL+K                  L V E     V V  L  ++ N+ADD
Sbjct: 194 TFFEIYNGKLFDLLNKKAK---------------LRVLEDGKQQVQVVGLQEHLVNSADD 238

Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
           + K++ +G+  R+ G T  N  SSRSHA F II+                          
Sbjct: 239 VIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR---------------------AKGR 277

Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
             G+  LVDLAG+ER A T ++ ++ + E ++IN SL  L   I AL   K  H P+R S
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 336

Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413
           KLT++L+DS +G NS+T M AT+ P   + E T++TLRYA RVK++   +
Sbjct: 337 KLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  495 bits (1277), Expect = e-172
 Identities = 130/400 (32%), Positives = 192/400 (48%), Gaps = 55/400 (13%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF RVRP+   E       +       G          +    +             
Sbjct: 23  NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERR------------ 70

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                          A  P   F+FD VF   S Q +++ E A  +V   L G+   IFA
Sbjct: 71  --------GTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFA 121

Query: 137 YGQTGTGKTFTMEGVNNV-PELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEE 194
           YGQTG+GKTFTMEG     P+L+G+IP +  H+F    + + +   +    SY EIYNE 
Sbjct: 122 YGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNET 181

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD--IGVYVKDLSAYIANNADDMEKIMSL 252
           +RDLL+    +    +          E++        + V +      +   +++ ++ L
Sbjct: 182 VRDLLATGTRKGQGGE---------CEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHL 232

Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
             +NR+V  TA NE SSRSH++F + I            GE+      ++G      L L
Sbjct: 233 ARQNRAVARTAQNERSSRSHSVFQLQIS-----------GEH-----SSRGLQCGAPLSL 276

Query: 313 VDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 368
           VDLAGSER     A G    +RL+E   IN SLSTLG VI AL + + +H+PYRNSKLT 
Sbjct: 277 VDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKLTY 335

Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
           +LQ+SLGG++K +M   + P   N  E++++LR+AS+V +
Sbjct: 336 LLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  494 bits (1274), Expect = e-171
 Identities = 131/402 (32%), Positives = 192/402 (47%), Gaps = 63/402 (15%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV++R+RP  K   ++    I   +                                 
Sbjct: 60  NIRVYLRIRPALKNLENSDTSLINVNE--------------------------------F 87

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           D  +G+ +++            F FD +FD     +D++ E    +V   L G+N  IFA
Sbjct: 88  DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFA 146

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKTFTM          GIIP++ +HIF  I K   +   + V   + EIYNE I
Sbjct: 147 YGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENI 201

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDMEKIMSLGN 254
            DLL  + +      +         E++   +     + ++++    + + +E I+   N
Sbjct: 202 VDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKAN 256

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
           K RS  +TA NE SSRSH+IF I +            G N        G+   G L+LVD
Sbjct: 257 KLRSTASTASNEHSSRSHSIFIIHLS-----------GSN-----AKTGAHSYGTLNLVD 300

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQD 372
           LAGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +LQ 
Sbjct: 301 LAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQY 360

Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
           SL G+SKT+M   + P+S +  ET+++LR+AS+V      +R
Sbjct: 361 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  489 bits (1262), Expect = e-169
 Identities = 122/427 (28%), Positives = 195/427 (45%), Gaps = 75/427 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
           +N+RVF R+RP  + E +                                        + 
Sbjct: 59  DNIRVFCRIRPPLESEENRMCCTW----------------------------------TY 84

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
            D     +   +    +    + F+FD VF   S Q DI+   + P++   L G+N  IF
Sbjct: 85  HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIF 143

Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEE 194
           AYGQTG+GKT+TM+GV   PE  G+IP +   +F  I    +   ++ ++ ++ EIYNE 
Sbjct: 144 AYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEV 200

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           + DLLS  +                + + +     +YV +++     + + +  +M    
Sbjct: 201 LYDLLSNEQKDME------------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 248

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
            NR+  +TA NE SSRSHA+  + +            G +       +  + +G ++LVD
Sbjct: 249 MNRATASTAGNERSSRSHAVTKLELI-----------GRH-----AEKQEISVGSINLVD 292

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSE       +  R+ E   IN SLS L NVI AL+  +  HIPYRNSKLT +L  SL
Sbjct: 293 LAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSL 347

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKI-CNKARVNQDPKDALLIKYQKEISE 433
           GGNSKT+M   V P    ++E++ +LR+A+ V      KA+ N+   +++        S 
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVA--NSSTQSN 405

Query: 434 LKKKLEE 440
                ++
Sbjct: 406 NSGSFDK 412

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score =  182 bits (465), Expect = 3e-55
 Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 1/99 (1%)

Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
           A  IN SLS LGNVISAL +G  TH+PYR+SK+TRILQDSL GN +T +     P+ +N 
Sbjct: 1   AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60

Query: 394 EETISTLRYASRVKKICNKARVNQD-PKDALLIKYQKEI 431
            ET STL +  R K I N   VN +   +    KY+KE 
Sbjct: 61  AETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score =  182 bits (464), Expect = 7e-55
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 397
           N SLS LGNVISAL +G  TH+PYR+SK+TRILQDSLGGN +T +     P+ +N  ET 
Sbjct: 1   NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60

Query: 398 STLRYASRVKKICNKARVNQD-PKDALLIKYQKEISELKKKLEE 440
           STL +  R K I N   VN +   +    KY+KE  + K     
Sbjct: 61  STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSV 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 6e-16
 Identities = 105/694 (15%), Positives = 201/694 (28%), Gaps = 214/694 (30%)

Query: 11  ETEEIEN-----VRVFVRVRPLSKKESDAGHVDIATVDLLNGIIT---VKNPAGSAHEPP 62
           ET E +      + VF           D   V     D+   I++   + +   S     
Sbjct: 10  ETGEHQYQYKDILSVF---EDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVS 62

Query: 63  KT-FTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTF---TFDTVFDANSKQLDIYNET 118
            T   F T+       L      V+            F      T     S    +Y E 
Sbjct: 63  GTLRLFWTL-------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 119 ARPI--VDKVLSGFN--------------------GTIFAYGQTGTGKT-FTMEGVNNVP 155
              +   ++V + +N                      +   G  G+GKT   ++   +  
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173

Query: 156 ELKGIIPNSFAHIF----GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKN-KDQCLEVK 210
               +       IF     +    +  ++ L ++ Y    N   R   S N K +   ++
Sbjct: 174 --YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 211 ERPDIGVYCLEVKERPDIGVYVKDL-------SAYIANNADDME-KIMSLGNKNRSVGAT 262
                    L +K +P    Y   L       +A    NA ++  KI+ L  + + V   
Sbjct: 232 AELRR----L-LKSKP----YENCLLVLLNVQNAKAW-NAFNLSCKIL-LTTRFKQV--- 277

Query: 263 AMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQA 322
             + +S+ +    S +   S  L    T  E   L  +                      
Sbjct: 278 -TDFLSAATTTHIS-LDHHSMTL----TPDEVKSLLLKY--------------------- 310

Query: 323 KTGASGQRL-KEASKIN-LSLSTLGNVISALV-DGKCTHIPYRN---SKLTRILQDSLGG 376
                 Q L +E    N   LS    +I+  + DG  T   +++    KLT I++ SL  
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSL-- 363

Query: 377 NSKTVMCATVGPASY--NYEE-------------TISTLRYASR-------VKKICNKAR 414
                    + PA Y   ++               +S + +          V K+   + 
Sbjct: 364 -------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 415 VNQDPKD------ALLIKYQKEISELK---KKLEEASVPPPREEPTPNPEPELDETEPCV 465
           V + PK+      ++ ++ + ++       + + +     P+                  
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK----------------TF 459

Query: 466 EPSEVIEDETDA--------ELKRA-QSDHQSMVEKLEL----LQKKVLVGGENLLEKAE 512
           +  ++I    D          LK     +  ++   + L    L++K+            
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572
           I   L               +  K  I + D        KY  L      +   L K+  
Sbjct: 520 ILNTLQQL------------KFYKPYICDND-------PKYERLVNA---ILDFLPKIEE 557

Query: 573 MLLAAKEERKD-VQRENRKEIEG-FLDNVRQITK 604
            L+ +K    D ++     E E  F +  +Q+ +
Sbjct: 558 NLICSKY--TDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 89/596 (14%), Positives = 183/596 (30%), Gaps = 163/596 (27%)

Query: 151 VNNVPE-LKGIIPNS-FAHIFGHIAKADESVKFL---VRVSYFEIYNEEIRDLLSKN--- 202
             +V +  K I+      HI      A      L   +     E+  + + ++L  N   
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 203 -----KDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
                K +  +      + +   +     D  V+ K        N   ++  + L    R
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY-------NVSRLQPYLKL----R 141

Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEA--QGSVQM---GRLHL 312
                A+ E+  R      ++I+   G+ G   +G+ W +  +      VQ     ++  
Sbjct: 142 ----QALLEL--RPAKN--VLID---GVLG---SGKTW-VALDVCLSYKVQCKMDFKIFW 186

Query: 313 VDLAGSERQAK-------------TGASGQRLKEASKINLSLSTLGNVISALVDGKCTHI 359
           ++L  +    +                   R   +S I L + ++   +  L+  K    
Sbjct: 187 LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241

Query: 360 PYRNSKLTRILQD--------SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
           PY N  L  +L +        +   + K ++                T R+      +  
Sbjct: 242 PYENCLL--VLLNVQNAKAWNAFNLSCKILL----------------TTRFKQVTDFLSA 283

Query: 412 KARVN---QDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPS 468
               +         L     K +  L K L+      P++ P      E+  T P     
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSL--LLKYLDC----RPQDLP-----REVLTTNPRR--L 330

Query: 469 EVIEDETDAELKRAQSDH-----QSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQ 523
            +I     AE  R              +KL  + +  L    N+LE AE ++     +  
Sbjct: 331 SII-----AESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDRLSV- 380

Query: 524 ELEHRKQKEEELKK--NIQEKDAERI--DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKE 579
                           +I       I  D+ +       +   +  KL K S   L  K+
Sbjct: 381 -----------FPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYS---LVEKQ 420

Query: 580 ERKDVQRENRKEIEG-FLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEW 638
                 +E+   I   +L+   ++  EY+  ++I+  +   K  +       +  D   +
Sbjct: 421 -----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-LD-QYF 473

Query: 639 ELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNSGSGQGGGRS 694
                ++ G++++ I      T    +   DF  L      +K+++  +      S
Sbjct: 474 ----YSHIGHHLKNIEHPERMTLFRMVFL-DFRFL-----EQKIRHDSTAWNASGS 519

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 466  EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
            +   ++ +     +++      + V     L+  V +        A+ + + L   A+ +
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 526  EHRKQ-------KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
            E  K+       K  +L++ I E++ E   + EK ++L+      ++KL+     L  ++
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 579  EERKDVQRENR---KEIEGFLDNVRQITKEYSYQQAIIQK 615
            EE K+         +EI      + Q   E    +    K
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 23/177 (12%)

Query: 425  IKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
            I  + +I +L++K++E                E       +   E+       +L+    
Sbjct: 924  IGLENKIMQLQRKIDEQ-------------NKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 485  DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
              +   E+ +    +V     +L E+    ++ L     E   +K  EE   K   E + 
Sbjct: 971  RLRMSEEEAKNATNRV----LSLQEEIAKLRKELHQTQTE---KKTIEEWADKYKHETEQ 1023

Query: 545  ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601
               +++E+ + L+ E E L++++           E  +    E  K++E  L++ R 
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIH---DQAKEITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 471  IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQ 530
            IE  +    K+     ++ + +L   Q+K+    +      E    L    + E E  + 
Sbjct: 911  IEARSVERYKKLHIGLENKIMQL---QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 531  KEEELKKNIQEK---DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
              E L+ + +E        + ++E+ + L++E      + K +       K E + +  E
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 588  NRKEIE 593
             +++  
Sbjct: 1028 LKEQNT 1033

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 34/194 (17%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 426  KYQKEISELKKKLEE-ASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
            K Q+++ +L+++LEE  +     +      + ++ + E  +   E   ++   E K  + 
Sbjct: 952  KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 485  DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
                +   L   ++K     +NL +     + ++      L+  ++  +EL+K  ++ + 
Sbjct: 1012 RVSDLTTNLAEEEEKA----KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 545  ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR---KEIEGFLDNVRQ 601
            E  D+ E+ + LQ +   L  +L K    L AA    +D   +     K+I     ++  
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127

Query: 602  ITKEYSYQQAIIQK 615
            + ++   ++A   K
Sbjct: 1128 LQEDLESEKAARNK 1141

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 426  KYQKEISELKKKLEEASVPPPREEPTPN--------PEPELDETEPCVEPSEVIEDETDA 477
            K  KE   L++++ + +     EE             E  + E E  ++  E    E + 
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 478  ELKRAQSDHQSMVEKLELLQKKVLVGGENLL----EKAEIQQQLLDAAAQELEHRKQKEE 533
              ++ + +   + E++  LQ ++      L     E      +L D  +Q+    K+  E
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 534  ------ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
                  +L+++++ + A R   E++   L EE E L  +L+         +E R    ++
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

Query: 588  N 588
            +
Sbjct: 1181 D 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 16/141 (11%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 477  AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELK 536
                 A+     +  K + L++ +      +  + E +++       E +  +Q+  +L+
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEIL----HEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961

Query: 537  KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK---EIE 593
            + ++E++A R  ++ +  +   + + +   +  +        +ERK ++         + 
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021

Query: 594  GFLDNVRQITKEYSYQQAIIQ 614
               +  + +TK  +  +++I 
Sbjct: 1022 EEEEKAKNLTKLKNKHESMIS 1042

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 21/180 (11%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 425  IKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
             + ++ + E++ ++EE                E + ++      + ++ +   +L+    
Sbjct: 923  QELEEILHEMEARIEE----------------EEERSQQLQAEKKKMQQQML-DLEEQLE 965

Query: 485  DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
            + ++  +KL+L +       + + +   I +   +   +E +  +++  +L  N+ E++ 
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

Query: 545  ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604
            +  ++ +  +  +     L  +LKK        ++ ++ ++ E+    E   +   QI +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 27/162 (16%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 426  KYQKEISELKKKLEEASVPPPREE---PTPNPEPELDETEPCVEPSEVIEDETDAELKRA 482
            K++  ISEL+ +L++      R+E        E E  +    +   +    E  A+L + 
Sbjct: 1036 KHESMISELEVRLKKEEKS--RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 483  QSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK 542
            + + Q+ + +LE    +      N L+K    +  +    ++LE  K    + +K     
Sbjct: 1094 EEELQAALARLEDETSQK----NNALKKIRELESHISDLQEDLESEKAARNKAEK----- 1144

Query: 543  DAERIDMEEKYSSLQ---EESEGLSKKLKKVSSMLLAAKEER 581
              ++ D+ E+  +L+   E++   +   +++        +++
Sbjct: 1145 --QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK----DAERIDMEEKYSSLQEES 560
           +  L++ + +QQ  +A  +ELE +  +  E K  +QEK         + EE    L  + 
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 561 EGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
           + L + L ++ + +   +E  + +Q E +K
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKK 952

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 519 DAAAQELEH-RKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
           D   QE E  RK +EE+ +K +QE DA     +      +E+++   K L++ +      
Sbjct: 78  DRLTQEPESIRKWREEQ-RKRLQELDAAS---KVMEQEWREKAK---KDLEEWNQRQSEQ 130

Query: 578 KEERKDVQRENRKEIEGFLDN 598
            E+ K     NR   + F   
Sbjct: 131 VEKNK---INNRIADKAFYQQ 148

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 44.9 bits (105), Expect = 8e-05
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 417 QDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETD 476
                  L + Q E+  + ++LEE       E      E E+   +  V   +   +  D
Sbjct: 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQK--LEDEIRAKQEEVSRIQQEVELKD 432

Query: 477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELK 536
           +E +R Q + +    K +     +L        +     +  D             E   
Sbjct: 433 SETRRLQEEVEDARRKQDEAAAALL---AATTPQHHHVAERADTDPDHDNASDAGSESGG 489

Query: 537 KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD-----VQRENRKE 591
            ++     + +D      +L E +E L  +LK +   L  + +E K+     + REN ++
Sbjct: 490 GDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQ 549

Query: 592 IEGFLDNVRQITK 604
                  +R+I K
Sbjct: 550 GRDKYKTLREIRK 562

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 22/181 (12%)

Query: 421 DALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELK 480
           D  +   +  I E +K L++A               + +     +   E  +     ++ 
Sbjct: 17  DKEIDSLEPLIREKRKDLDKA-------------LNDKEAKNKAILNLEEEKLALKLQVS 63

Query: 481 RAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQ 540
           + +   Q    K+  +QKK        + + + +++L  +   E +  K++  +  + I+
Sbjct: 64  KNEQTLQDTNAKIASIQKK--------MSEIKSEREL-RSLNIEEDIAKERSNQANREIE 114

Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR 600
               E     EK   L++E   L K   ++ S++    +  K+ Q+   K+ E  ++   
Sbjct: 115 NLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE 174

Query: 601 Q 601
            
Sbjct: 175 P 175

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 9/224 (4%)

Query: 401 RYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDE 460
           R A  V    +   V+   +  L  + +K+  +  K+ +EAS             P  +E
Sbjct: 362 REAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEE 421

Query: 461 TEPCVEPSEVIEDETDAELKRAQSDHQSMVEK-------LELLQKKVLVGGENLLEKAEI 513
            +  +            +L+  +  +     K       L+   K      + +L+  + 
Sbjct: 422 VKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQT 481

Query: 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573
             +       E    +  +   K   + +      ME+K  S QE  + L++K++     
Sbjct: 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541

Query: 574 LLAAKEERKD--VQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
           LL  +E      +Q + +   EGF    R +  E    Q  +++
Sbjct: 542 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 455 EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQ 514
           E +L E +   E ++   +E   +L   +SD +   E+ EL + K       L E+ +  
Sbjct: 145 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC----AELEEEIKTV 200

Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
              L +   + E   QKE++ ++ I+    +  + E +    +     L K +  +   L
Sbjct: 201 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260

Query: 575 LAAKEERKDVQRENRKEIE 593
            A K + K +  E    + 
Sbjct: 261 YAQKLKYKAISEELDHALN 279

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 444 PPPREEPTPNPEPELDETEPCVE----PSEVIEDETDAEL 479
               ++      P L+    C E    P +++E  ++ ++
Sbjct: 4   RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV 43

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 5e-04
 Identities = 28/236 (11%), Positives = 85/236 (36%), Gaps = 18/236 (7%)

Query: 405 RVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPC 464
            + ++  + R   D    LL + +   ++L+ K +E     P  E       E       
Sbjct: 445 ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTV 504

Query: 465 VEPSEVIEDETDAELKRAQSDHQSMVEKL----ELLQKKVLVGGENLLEKAEIQQQLLDA 520
           ++ +     + D ++K     H+  +  L      L   +         +      +L +
Sbjct: 505 LDKAV----QADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560

Query: 521 AAQELEH---RK-QKEEELKKNIQEKDAERIDMEEKYSSLQEES---EGLSKKLKKVSSM 573
               L+     +   E +LK    +  ++ +    +   + EE+     L +    +++ 
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTK 620

Query: 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIP--TKYLELMTQ 627
           +  + ++++ + +  +   + F   ++Q   E + ++ +++        ++EL+  
Sbjct: 621 VQESLKKQEGLLKNIQVSHQEFS-KMKQSNNEANLREEVLKNLATAYDNFVELVAN 675

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	705
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.97
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.96
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.92
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.82
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.8
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.53
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.21
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.09
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	93.82
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.46
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	93.33
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.26
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.17
2qgz_A	308	Helicase loader, putative primosome component; str	92.78
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.28
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.16
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.42
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.21
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	90.97
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	90.49
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	90.39
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	90.29
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.54
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.37
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	88.86
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.73
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	88.19
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.12
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	87.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	86.84
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	86.68
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	86.57
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	86.48
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.1
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	85.92
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	85.84
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.81
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	85.73
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	85.58
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	85.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	85.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.11
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	85.03
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	84.98
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	84.97
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.89
3bos_A	242	Putative DNA replication factor; P-loop containing	84.79
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	84.72
4etp_B	333	Spindle POLE BODY-associated protein VIK1; kinesin	84.58
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.38
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	83.62
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.27
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	83.27
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	83.08
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.0
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.77
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	82.6
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	82.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	82.23
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	81.59
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	81.38
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	81.32
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.12
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	80.83
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.82
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.58
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	80.36
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	80.2

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=1.3e-97  Score=806.37  Aligned_cols=355  Identities=66%  Similarity=1.010  Sum_probs=302.3

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS   91 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (705)
                      +...++|+|+|||||++..|...+...++.+++..+.|.+.+|.+                                  .
T Consensus        17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~----------------------------------~   62 (372)
T 3b6u_A           17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKG----------------------------------T   62 (372)
T ss_dssp             ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTC----------------------------------T
T ss_pred             CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCC----------------------------------C
Confidence            344799999999999999999999999999998888999987731                                  1


Q ss_pred             CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229         92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~  171 (705)
                      ....++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+|+..|||||++++||..
T Consensus        63 ~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~  142 (372)
T 3b6u_A           63 AHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTH  142 (372)
T ss_dssp             TTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHH
Confidence            12346899999999999999999999999999999999999999999999999999999888788889999999999999


Q ss_pred             hhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHH
Q psy11229        172 IAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMS  251 (705)
Q Consensus       172 i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~  251 (705)
                      +... ....|.|+|||+|||||+|+|||++.....             +.+++++++|+||.||+++.|.|++|++.+|.
T Consensus       143 i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~-------------l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~  208 (372)
T 3b6u_A          143 ISRS-QNQQYLVRASYLEIYQEEIRDLLSKDQTKR-------------LELKERPDTGVYVKDLSSFVTKSVKEIEHVMN  208 (372)
T ss_dssp             HHTC-SSCEEEEEEEEEEEETTEEEETTSSCTTCC-------------BCEEEETTTEEEETTCCCEECCSHHHHHHHHH
T ss_pred             hhhc-cCCceEEEEEEEEEeCCEEEECCCCCCCCC-------------ceEEECCCCcEecCCCEEEEecCHHHHHHHHH
Confidence            9874 478999999999999999999998765433             45599999999999999999999999999999


Q ss_pred             hhhccCccccccCCCCCCCceeEEEEEEEeecCC-CCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcccc
Q psy11229        252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGL-GGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQR  330 (705)
Q Consensus       252 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r  330 (705)
                      .|.++|++++|.||..|||||+||+|+|++.... .+.              ..+..|+|+|||||||||..++++.|.|
T Consensus       209 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~--------------~~~~~skL~lVDLAGSEr~~~t~~~g~r  274 (372)
T 3b6u_A          209 VGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE--------------NHIRVGKLNLVDLAGSERQAKTGAQGER  274 (372)
T ss_dssp             HHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----C--------------CCEEEEEEEEEECCCCCE----------
T ss_pred             HHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCC--------------cceEEEEEEEEECCCCccccccCcchhh
Confidence            9999999999999999999999999999876521 111              4577899999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229        331 LKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC  410 (705)
Q Consensus       331 lkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~  410 (705)
                      ++|+.+||+||++||+||.||++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+
T Consensus       275 l~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~  354 (372)
T 3b6u_A          275 LKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK  354 (372)
T ss_dssp             EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCB
T ss_pred             hhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999887899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcchHHHHHHH
Q psy11229        411 NKARVNQDPKDALLIKYQ  428 (705)
Q Consensus       411 n~~~~n~~~~~~~l~~~~  428 (705)
                      |+|++|+++.++++++||
T Consensus       355 n~~~~n~~~~~~~~~~~~  372 (372)
T 3b6u_A          355 NKPRVNEDPKDALLREFQ  372 (372)
T ss_dssp             CCCCCCC-----------
T ss_pred             ccceecCChHHHHHHhcC
Confidence            999999999999998875

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=1.8e-95  Score=785.25  Aligned_cols=347  Identities=53%  Similarity=0.822  Sum_probs=285.9

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .++|+|+|||||++.+|...++..++.+++.++.|.+.+|.....                             ......
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~-----------------------------~~~~~~   53 (350)
T 2vvg_A            3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKS-----------------------------ATQAKK   53 (350)
T ss_dssp             -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC-----------------------------------------
T ss_pred             CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeecccccc-----------------------------ccccCC
Confidence            589999999999999999999999999998888999887631100                             001123


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      .++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....   .|||||++++||+.+..
T Consensus        54 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~---~Giipr~~~~lF~~i~~  130 (350)
T 2vvg_A           54 VPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEE---PGAIPNSFKHLFDAINS  130 (350)
T ss_dssp             --EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSS---BCHHHHHHHHHHHHHHT
T ss_pred             CceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCcc---CchHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999998755   49999999999999987


Q ss_pred             cCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229        175 ADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN  254 (705)
Q Consensus       175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~  254 (705)
                      ......|.|+|||+|||||+|+|||++..               .+.+++++.+|+||.||+++.|.|++|++.+|..|.
T Consensus       131 ~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~  195 (350)
T 2vvg_A          131 SSSNQNFLVIGSYLELYNEEIRDLIKNNT---------------KLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGF  195 (350)
T ss_dssp             CCTTEEEEEEEEEEEEETTEEEETTTTEE---------------EECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHH
T ss_pred             hccCCcEEEEEEEEEEeCCEEEEcccCCc---------------CceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHH
Confidence            77788999999999999999999997421               256699999999999999999999999999999999


Q ss_pred             ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229        255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA  334 (705)
Q Consensus       255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~  334 (705)
                      ++|++++|.||..|||||+||+|+|++.....+.              ..+..|+|+|||||||||..++++.|+|++|+
T Consensus       196 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~--------------~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~  261 (350)
T 2vvg_A          196 ANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK--------------EVIRVGKLNLVDLAGSERQSKTGATGETLVEG  261 (350)
T ss_dssp             HHC----------CTTCEEEEEEEEEEEEC------------------CEEEEEEEEEEECCCCCC--------------
T ss_pred             hccccccccCCCCCCcceEEEEEEEEEeeccCCC--------------ccEEEEEEEEEeCCCCCccccccccHHHHHHH
Confidence            9999999999999999999999999886533222              45678999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229        335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR  414 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~  414 (705)
                      .+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|+|.
T Consensus       262 ~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~  340 (350)
T 2vvg_A          262 AKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPR  340 (350)
T ss_dssp             -CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccce
Confidence            999999999999999999976 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcchHH
Q psy11229        415 VNQDPKDAL  423 (705)
Q Consensus       415 ~n~~~~~~~  423 (705)
                      +|++|++++
T Consensus       341 ~n~~~~~~~  349 (350)
T 2vvg_A          341 INEDPKDAQ  349 (350)
T ss_dssp             CCBSCTTCC
T ss_pred             ecCCchhcc
Confidence            999998754

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=4.1e-95  Score=786.48  Aligned_cols=352  Identities=44%  Similarity=0.652  Sum_probs=293.7

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCC--CCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLL--NGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPA   89 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~--~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   89 (705)
                      ....++|+|+|||||++..|...+...++.++..  ..+|.+                                      
T Consensus         7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--------------------------------------   48 (365)
T 2y65_A            7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--------------------------------------   48 (365)
T ss_dssp             -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--------------------------------------
T ss_pred             CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--------------------------------------
Confidence            3457899999999999999988877666655432  112111                                      


Q ss_pred             CCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHH
Q psy11229         90 GSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIF  169 (705)
Q Consensus        90 ~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF  169 (705)
                           ..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...++...|||||++++||
T Consensus        49 -----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF  123 (365)
T 2y65_A           49 -----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIF  123 (365)
T ss_dssp             -----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHH
T ss_pred             -----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHH
Confidence                 137899999999999999999999999999999999999999999999999999998887888899999999999


Q ss_pred             HhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229        170 GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI  249 (705)
Q Consensus       170 ~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l  249 (705)
                      +.+.....+..|.|+|||+|||||+|+|||++...              .+.+++++.+++||.||+++.|.|++|++.+
T Consensus       124 ~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~l  189 (365)
T 2y65_A          124 NHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV--------------NLSVHEDKNRVPYVKGATERFVSSPEDVFEV  189 (365)
T ss_dssp             HHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCC--------------SBCEEECSSSCEEETTCCCEEECSHHHHHHH
T ss_pred             HHHHhccCCceEEEEEEEEEEECCeeeecccCCcC--------------CceEEECCCCCEEecCCEEEecCCHHHHHHH
Confidence            99988777889999999999999999999986532              2456999999999999999999999999999


Q ss_pred             HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229        250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ  329 (705)
Q Consensus       250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  329 (705)
                      |..|.++|++++|.||..|||||+||+|+|.+.....                .....|+|+|||||||||..++++.|.
T Consensus       190 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~  253 (365)
T 2y65_A          190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN----------------QKKLSGKLYLVDLAGSEKVSKTGAEGT  253 (365)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCC---------
T ss_pred             HHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC----------------CCEeEEEEEEEECCCCCcchhcCCcch
Confidence            9999999999999999999999999999998765322                335679999999999999999999999


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      |++|+.+||+||++||+||.||++++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||+|
T Consensus       254 rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I  333 (365)
T 2y65_A          254 VLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV  333 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999987789999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcch-HHHHHHHHHHHHHHH
Q psy11229        410 CNKARVNQDPKD-ALLIKYQKEISELKK  436 (705)
Q Consensus       410 ~n~~~~n~~~~~-~~l~~~~~ei~~Lk~  436 (705)
                      +|+|.+|+++.. .++++|++|+++|+.
T Consensus       334 ~n~~~~n~~~~~~~~~~~~~~e~~~~~~  361 (365)
T 2y65_A          334 KNVVCVNEELTAEEWKRRYEKEKEKNAR  361 (365)
T ss_dssp             EEECCCEEECCSHHHHHC----------
T ss_pred             cCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999865 566778888887764

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=3.3e-93  Score=769.59  Aligned_cols=339  Identities=49%  Similarity=0.751  Sum_probs=307.7

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      +.++|+|+|||||++..|...+...+|.++... .+.+..                                       .
T Consensus         4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~~~~---------------------------------------~   43 (355)
T 1goj_A            4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPD-TCTVDS---------------------------------------K   43 (355)
T ss_dssp             SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTT-EEEECS---------------------------------------T
T ss_pred             CCCCeEEEEECCCCChHHhhcCCceEEEEcCCC-eEEEcc---------------------------------------C
Confidence            468999999999999999988888887775432 232211                                       1


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC-CCCCCCCchHHHHHHHHHhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHI  172 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~-~~~~~~GIipr~~~~lF~~i  172 (705)
                      ...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|.. +.++..|||||++++||..+
T Consensus        44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i  123 (355)
T 1goj_A           44 EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI  123 (355)
T ss_dssp             TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHH
T ss_pred             CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHH
Confidence            23578999999999999999999999999999999999999999999999999999964 33566799999999999999


Q ss_pred             hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      ........|.|+|||+|||||+|+|||++...              .+.+++++.+|+||.||+++.|.|++|++.+|..
T Consensus       124 ~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------------~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~  189 (355)
T 1goj_A          124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQND--------------NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRR  189 (355)
T ss_dssp             HTSCTTEEEEEEEEEEEEETTEEEETTSTTCC--------------SCCEEEETTTEEEETTCCCEECCSHHHHHHHHHH
T ss_pred             HhcccCceEEEEEEEEEEECCEEEEcccCccC--------------CceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHH
Confidence            88777889999999999999999999987532              1456999999999999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..++++.|.+++
T Consensus       190 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  253 (355)
T 1goj_A          190 GGNARAVAATNMNQESSRSHSIFVITITQKNVET----------------GSAKSGQLFLVDLAGSEKVGKTGASGQTLE  253 (355)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCSCCTTSSSCCCCTT
T ss_pred             HHhhcCcccccCCCCCCCceEEEEEEEEEeccCC----------------CceeeeEEEEEECCCCCcccccccchhhHH
Confidence            9999999999999999999999999998765322                345689999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      |+.+||+||++||+||.||++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|+
T Consensus       254 E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~  333 (355)
T 1goj_A          254 EAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNK  333 (355)
T ss_dssp             TTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999987789999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchH
Q psy11229        413 ARVNQDPKDA  422 (705)
Q Consensus       413 ~~~n~~~~~~  422 (705)
                      |++|+++..+
T Consensus       334 ~~vn~~~~~~  343 (355)
T 1goj_A          334 AKVNAELSPA  343 (355)
T ss_dssp             CCCCSSSSCS
T ss_pred             ceeCCCCCHH
Confidence            9999987654

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=1.5e-92  Score=766.81  Aligned_cols=347  Identities=38%  Similarity=0.606  Sum_probs=304.1

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      ..++|+|+|||||++..|...+...++.. .+.-.|.+...                                      .
T Consensus         3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~--------------------------------------~   43 (369)
T 3cob_A            3 MKGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWK--------------------------------------D   43 (369)
T ss_dssp             -CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECT--------------------------------------T
T ss_pred             CCCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCC--------------------------------------C
Confidence            35899999999999999987665433221 11112221110                                      1


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      ...+.|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|.+..+   |||||++.+||..+.
T Consensus        44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~  119 (369)
T 3cob_A           44 DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLTPRAMSELFRIMK  119 (369)
T ss_dssp             SCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHHH
T ss_pred             CCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCC---chhHHHHHHHHHHHH
Confidence            234889999999999999999999 6999999999999999999999999999999987554   999999999999998


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      .......|.|+|||+|||||+|+|||++....           ...+.+++++.++++|.||+++.|.|++|++.+|..|
T Consensus       120 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g  188 (369)
T 3cob_A          120 KDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-----------RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRG  188 (369)
T ss_dssp             HTTTTEEEEEEEEEEEECSSCEEESSCCSSSC-----------CCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHH
T ss_pred             hhccCceeEEEEEEEEEeCceeeecCCCcccC-----------CcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHH
Confidence            87767899999999999999999999875432           1235679999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..++++.|.|++|
T Consensus       189 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E  252 (369)
T 3cob_A          189 SEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----------------QAIARGKLSFVDLAGSERVKKSGSAGNQLKE  252 (369)
T ss_dssp             HHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCSSCCCCCSSCSHHHHH
T ss_pred             hhcceeecccCCCCCCcceEEEEEEEEEecCCC----------------CcEEEEEEEEEeCCCCCcccccCccchhhHH
Confidence            999999999999999999999999998765322                3467899999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA  413 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~  413 (705)
                      +.+||+||++||+||.||++++ .||||||||||+||||+||||++|+|||||||+..+++||++||+||+||++|+|+|
T Consensus       253 ~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~  331 (369)
T 3cob_A          253 AQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP  331 (369)
T ss_dssp             HHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCC
Confidence            9999999999999999999875 799999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHhh
Q psy11229        414 RVNQDPKDALLIKYQKEISELKKKLEE  440 (705)
Q Consensus       414 ~~n~~~~~~~l~~~~~ei~~Lk~~l~~  440 (705)
                      .+|+++         ++|.+|+.+|..
T Consensus       332 ~~n~~~---------~ei~~L~~~l~~  349 (369)
T 3cob_A          332 SKNVSS---------KEVARLKKLVSY  349 (369)
T ss_dssp             CCCEEC---------HHHHHHHHHTTC
T ss_pred             cccCCH---------HHHHHHHHHHHH
Confidence            999998         455556665543

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-93  Score=773.04  Aligned_cols=355  Identities=34%  Similarity=0.525  Sum_probs=253.2

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS   91 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (705)
                      +...++|+|+|||||++..|...+...||.+. +...+.+.++                                  .. 
T Consensus        17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~----------------------------------~~-   60 (388)
T 3bfn_A           17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANW----------------------------------RN-   60 (388)
T ss_dssp             SSCCCCCEEEEEECCCC---------------------------------------------------------------
T ss_pred             cCCCCCEEEEEECCCCChhhhccCCCceEEec-CCCeEEEecC----------------------------------CC-
Confidence            45579999999999999999776655555432 1223333222                                  10 


Q ss_pred             CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229         92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~  171 (705)
                       ....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+   |||||++.+||..
T Consensus        61 -~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~---Giipra~~~lF~~  136 (388)
T 3bfn_A           61 -HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP---GVIPRALMDLLQL  136 (388)
T ss_dssp             ---CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSB---CHHHHHHHHHHHH
T ss_pred             -CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCcccc---chhHHHHHHHHHH
Confidence             123578999999999999999999999999999999999999999999999999999976554   9999999999999


Q ss_pred             hhhc---CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHH
Q psy11229        172 IAKA---DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK  248 (705)
Q Consensus       172 i~~~---~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~  248 (705)
                      +...   ...+.|.|+|||+|||||+|+|||++... .             +.|+|++.++++|.||+++.|.|++|++.
T Consensus       137 i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~-------------l~ired~~~~v~v~gl~~~~V~s~~e~~~  202 (388)
T 3bfn_A          137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-D-------------LVIREDCRGNILIPGLSQKPISSFADFER  202 (388)
T ss_dssp             HHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC-B-------------CCCEECTTSCEECTTCCCEECCSHHHHHH
T ss_pred             HHHhhccCCCceEEEEEEEEEEECCeeeehhccCCC-C-------------ceEEEcCCCCEEeccceEEEeCCHHHHHH
Confidence            9763   34578999999999999999999987532 1             45699999999999999999999999999


Q ss_pred             HHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcc
Q psy11229        249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASG  328 (705)
Q Consensus       249 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g  328 (705)
                      +|..|.++|++++|.||..|||||+||+|+|++.....+               .....|+|+|||||||||..++++.|
T Consensus       203 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~---------------~~~~~skL~lVDLAGSEr~~~t~~~g  267 (388)
T 3bfn_A          203 HFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP---------------FRQREGKLYLIDLAGSEDNRRTGNKG  267 (388)
T ss_dssp             HHHHHTC-----------CGGGSEEEEEEEEEEEESSTT---------------CCEEEEEEEEEECCCTTC--------
T ss_pred             HHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC---------------CceeEEEEEEEECCCCcccccccCcc
Confidence            999999999999999999999999999999987653221               23467999999999999999999999


Q ss_pred             ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229        329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK  408 (705)
Q Consensus       329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~  408 (705)
                      .|++|+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+
T Consensus       268 ~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~  346 (388)
T 3bfn_A          268 LRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKE  346 (388)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEE
T ss_pred             chhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999876 6999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCcchHHHHHHHHHHHHHHHHHhh
Q psy11229        409 ICNKARVNQDPKDALLIKYQKEISELKKKLEE  440 (705)
Q Consensus       409 I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~  440 (705)
                      |+|+|.+|+++....+..++    .++++|..
T Consensus       347 I~n~p~~n~~~~~~~l~~~k----~~~~~l~~  374 (388)
T 3bfn_A          347 VINRPFTNESLQPHALGPVK----LSQKELLG  374 (388)
T ss_dssp             EC------------------------------
T ss_pred             CcCcCcccCCCCHHHHHHHH----HHHHHhhC
Confidence            99999999998876555433    34444443

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=2.4e-92  Score=781.81  Aligned_cols=368  Identities=41%  Similarity=0.627  Sum_probs=289.3

Q ss_pred             ccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229         11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG   90 (705)
Q Consensus        11 ~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   90 (705)
                      ..+..++|+|+|||||++++|...+...++.+++....+++..|.........                 +.      ..
T Consensus        33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------g~------~~   89 (443)
T 2owm_A           33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADAR-----------------GA------RS   89 (443)
T ss_dssp             -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC-----------------------------------
T ss_pred             cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCccccccc-----------------cc------cc
Confidence            34557899999999999999999898889999988888888766321000000                 00      00


Q ss_pred             CCCCCCeeEeeceeeCC-------CCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHH
Q psy11229         91 SAHEPPKTFTFDTVFDA-------NSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPN  163 (705)
Q Consensus        91 ~~~~~~~~F~FD~Vf~~-------~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr  163 (705)
                      ......+.|+||+||++       .++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+   |||||
T Consensus        90 ~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~---GIipr  166 (443)
T 2owm_A           90 RRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQP---GLIPR  166 (443)
T ss_dssp             ---CCCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSC---CHHHH
T ss_pred             ccccCCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCC---chHHH
Confidence            01123689999999976       489999999999999999999999999999999999999999976554   99999


Q ss_pred             HHHHHHHhhhhc---CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEc
Q psy11229        164 SFAHIFGHIAKA---DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIA  240 (705)
Q Consensus       164 ~~~~lF~~i~~~---~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v  240 (705)
                      ++++||..|...   ..+..|.|+|||+|||||+|+|||++....         .....+.|+|++.+|+||.||+++.|
T Consensus       167 ~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~---------~~~~~l~ire~~~~g~~V~gl~e~~V  237 (443)
T 2owm_A          167 TCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPN---------KPPYYLKVRESPTEGPYVKDLTEVPV  237 (443)
T ss_dssp             HHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSS---------CCCCCCEEEEETTTEEEEETCCCEEC
T ss_pred             HHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccC---------CcccccceeECCCCCEeccCCEEEEc
Confidence            999999999865   246899999999999999999999874321         01223677999999999999999999


Q ss_pred             CCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcc
Q psy11229        241 NNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER  320 (705)
Q Consensus       241 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr  320 (705)
                      .|++|++.+|..|.++|++++|.||..|||||+||+|+|++.......            .......|+|+|||||||||
T Consensus       238 ~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSER  305 (443)
T 2owm_A          238 RGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLET------------DDTTERSSRIRLVDLAGSER  305 (443)
T ss_dssp             CSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------------------CCEEEEEEEEEECCCCCC
T ss_pred             CCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCC------------CCcceEEEEEEEEECCCCcc
Confidence            999999999999999999999999999999999999999875421100            11345689999999999999


Q ss_pred             ccccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCC---------------------CCccCCCCcchhhhhccCCCCcc
Q psy11229        321 QAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC---------------------THIPYRNSKLTRILQDSLGGNSK  379 (705)
Q Consensus       321 ~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~---------------------~hVPyRdSkLTrLLqdsLgGnsk  379 (705)
                      ..++++.|+|++|+.+||+||++||+||.||++++.                     .|||||||||||||||+||||++
T Consensus       306 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnsk  385 (443)
T 2owm_A          306 AKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSK  385 (443)
T ss_dssp             --------------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCE
T ss_pred             ccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCc
Confidence            999999999999999999999999999999987542                     39999999999999999999999


Q ss_pred             eeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccC-CcchHHHHHH
Q psy11229        380 TVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ-DPKDALLIKY  427 (705)
Q Consensus       380 t~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~-~~~~~~l~~~  427 (705)
                      |+|||||||+  +|+||++||+||+|||+|+|+|.+|+ |+.++..++.
T Consensus       386 T~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~~~~~  432 (443)
T 2owm_A          386 TAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDA  432 (443)
T ss_dssp             EEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC----------
T ss_pred             EEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccHHHHHH
Confidence            9999999997  59999999999999999999999999 7777665543

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.1e-92  Score=761.70  Aligned_cols=339  Identities=45%  Similarity=0.677  Sum_probs=289.3

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      +.++|+|+|||||++..|...+...++.+...+..|...                                         
T Consensus         2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-----------------------------------------   40 (349)
T 1t5c_A            2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-----------------------------------------   40 (349)
T ss_dssp             -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-----------------------------------------
T ss_pred             CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-----------------------------------------
Confidence            468999999999999999877765555444333332211                                         


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      ...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+   |||||++++||..+.
T Consensus        41 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~  117 (349)
T 1t5c_A           41 DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHL---GVIPRAIHDIFQKIK  117 (349)
T ss_dssp             TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHGG
T ss_pred             CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCC---chHHHHHHHHHHHHH
Confidence            12478999999999999999999999999999999999999999999999999999976554   999999999999998


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      ... +..|.|+|||+|||||+|+|||++....            ..+.|+|++.+++||.||+++.|.|++|++.+|..|
T Consensus       118 ~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g  184 (349)
T 1t5c_A          118 KFP-DREFLLRVSYMEIYNETITDLLCGTQKM------------KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG  184 (349)
T ss_dssp             GCT-TEEEEEEEEEEEEETTEEEESSSSSCTT------------CCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHH
T ss_pred             hCc-CCcEEEEEEEEEEeCCEEEEccCCCCCC------------CCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHh
Confidence            754 6789999999999999999999875421            125679999999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|++++|.||..|||||+||+|.|++.....+..           ..+.+..|+|+|||||||||..++++.|.|++|
T Consensus       185 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-----------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E  253 (349)
T 1t5c_A          185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN-----------CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKE  253 (349)
T ss_dssp             HHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC------------------CEEEEEEEEEECCCGGGTC-------CCCS
T ss_pred             hcccccccccCCCCCCCceEEEEEEEEEeccCCCcC-----------cCccEEEEEEEEEECCCCccccccCCccccchh
Confidence            999999999999999999999999998865322110           114567899999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      +.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||||||+  +++||++||+||+|||+|+|+
T Consensus       254 ~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~  331 (349)
T 1t5c_A          254 GCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNT  331 (349)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCC
T ss_pred             hhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccC
Confidence            9999999999999999999875 3699999999999999999999999999999997  589999999999999999999


Q ss_pred             ccccCCcchH
Q psy11229        413 ARVNQDPKDA  422 (705)
Q Consensus       413 ~~~n~~~~~~  422 (705)
                      |.+|+++...
T Consensus       332 ~~vn~~~~~~  341 (349)
T 1t5c_A          332 PYVNEVSTDE  341 (349)
T ss_dssp             CCCCEEC---
T ss_pred             ceeccCCCCC
Confidence            9999998755

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=6.6e-93  Score=768.97  Aligned_cols=345  Identities=47%  Similarity=0.719  Sum_probs=285.2

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS   91 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (705)
                      .+..++|+|+|||||++..|...+...++.+++....|.+..+..                                  .
T Consensus         4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~----------------------------------~   49 (359)
T 1x88_A            4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL----------------------------------A   49 (359)
T ss_dssp             -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE----------------------------------T
T ss_pred             CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc----------------------------------c
Confidence            345799999999999999999988888999988777777754200                                  0


Q ss_pred             CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCC--------CCCCchHH
Q psy11229         92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVP--------ELKGIIPN  163 (705)
Q Consensus        92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~--------~~~GIipr  163 (705)
                      .....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+        ...|||||
T Consensus        50 ~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr  129 (359)
T 1x88_A           50 DKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR  129 (359)
T ss_dssp             TEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHH
T ss_pred             CCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHH
Confidence            0112578999999999999999999999999999999999999999999999999999976421        23699999


Q ss_pred             HHHHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCC--CcEEEccceEEEcC
Q psy11229        164 SFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD--IGVYVKDLSAYIAN  241 (705)
Q Consensus       164 ~~~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~--~gv~v~~l~~~~v~  241 (705)
                      ++++||+.+..  .+..|.|+|||+|||||+|+|||++.....           ..+.+++++.  +|++|.||+++.|.
T Consensus       130 ~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~-----------~~l~i~~~~~~~~~v~v~gl~~~~v~  196 (359)
T 1x88_A          130 TLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLNPSSDVS-----------ERLQMFDDPRNKRGVIIKGLEEITVH  196 (359)
T ss_dssp             HHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEETTCTTSCTT-----------CCBEEEEETTEEEEEEEETCCCEEEC
T ss_pred             HHHHHHHHHhc--cCceEEEEEEEEEEeCceeeehhccccccc-----------ccceEEeccCCCCCEEEcCCEEEEcC
Confidence            99999999876  368899999999999999999998764321           1255688874  78999999999999


Q ss_pred             CHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCCCcc
Q psy11229        242 NADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER  320 (705)
Q Consensus       242 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr  320 (705)
                      |++|++.+|..|.++|++++|.||..|||||+||+|+|+.... .++.              ..+..|+|+|||||||||
T Consensus       197 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~--------------~~~~~skL~lVDLAGSEr  262 (359)
T 1x88_A          197 NKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE--------------ELVKIGKLNLVDLAGSEN  262 (359)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSC--------------EEEEEEEEEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCC--------------ceEEEEEEEEEcCCCCCc
Confidence            9999999999999999999999999999999999999987542 2221              345689999999999999


Q ss_pred             ccccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229        321 QAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL  400 (705)
Q Consensus       321 ~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL  400 (705)
                      ..++++.|.|++|+.+||+||++||+||.||+++. .|||||||||||||||+||||++|+|||||||+..+++||++||
T Consensus       263 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TL  341 (359)
T 1x88_A          263 IGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTL  341 (359)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHH
T ss_pred             ccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHH
Confidence            99999999999999999999999999999999865 79999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccCC
Q psy11229        401 RYASRVKKICNKARVNQD  418 (705)
Q Consensus       401 rfa~rak~I~n~~~~n~~  418 (705)
                      +||+|||+|+|+|.+|++
T Consensus       342 rfA~rak~I~n~p~vn~~  359 (359)
T 1x88_A          342 EYAHRAKNILNKPEVNQK  359 (359)
T ss_dssp             HHHHHHTTCCCCCC----
T ss_pred             HHHHHHhhccCcceeCCC
Confidence            999999999999999974

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3.2e-91  Score=754.73  Aligned_cols=348  Identities=41%  Similarity=0.632  Sum_probs=265.4

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS   91 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (705)
                      ....++|+|+|||||++.+|...++..+|.+..  +.+.+.+|.....      .+.........          + ...
T Consensus         6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~d~~~~~~------~~~~~~~~~~~----------~-~~~   66 (355)
T 3lre_A            6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVD--KHILVFDPKQEEV------SFFHGKKTTNQ----------N-VIK   66 (355)
T ss_dssp             ------CEEEEEECCCCHHHHHTTCCBSEEECS--SSEEEEC--------------------------------------
T ss_pred             hhccCCCEEEEEeCcCChHHHhcCCceEEEecC--CceEEecCCCCcc------eeecccccccc----------c-chh
Confidence            344799999999999999999999998888753  3455555531100      00000000000          0 000


Q ss_pred             CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229         92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~  171 (705)
                      .....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....|   |||||++.+||..
T Consensus        67 ~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~lf~~  143 (355)
T 3lre_A           67 KQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP---GVMYLTMLHLYKC  143 (355)
T ss_dssp             ---CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSB---CHHHHHHHHHHHH
T ss_pred             ccCCCceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCC---CeeehhhhHHHHh
Confidence            1234678999999999999999999999999999999999999999999999999999987665   9999999999999


Q ss_pred             hhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHH
Q psy11229        172 IAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMS  251 (705)
Q Consensus       172 i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~  251 (705)
                      +........|.|+|||+|||||+|+|||++..               .+.+++++..|++|.||+++.|.|++|++.+|.
T Consensus       144 i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------------~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~  208 (355)
T 3lre_A          144 MDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG---------------PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLD  208 (355)
T ss_dssp             HHHTTTTEEEEEEEEEEEEETTEEEESSSCCC---------------CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHH
T ss_pred             hhhhccCceEEEEEEEEEEECCEEEECcCCCC---------------CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHH
Confidence            99877788999999999999999999998642               156699999999999999999999999999999


Q ss_pred             hhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccH
Q psy11229        252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRL  331 (705)
Q Consensus       252 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl  331 (705)
                      .|.++|++++|.||..|||||+||+|+|++.......             ...+..|+|+|||||||||..++++.|.|+
T Consensus       209 ~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~-------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl  275 (355)
T 3lre_A          209 NGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASI-------------NQNVRIAKMSLIDLAGSERASTSGAKGTRF  275 (355)
T ss_dssp             HHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCT-------------TCCCCCEEEEEEECCCCCC-----------
T ss_pred             HHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCC-------------CCCEEEEEEEEEECCCCCcCcCCCCccHHH
Confidence            9999999999999999999999999999886532211             134678999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        332 KEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       332 kE~~~IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      +|+.+||+||++||+||.||++++  ..|||||||||||||||+|||||+|+|||||||+..+|+||++||+||+|||+|
T Consensus       276 ~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          276 VEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             ------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            999999999999999999998854  369999999999999999999999999999999999999999999999999986

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=1.6e-91  Score=748.65  Aligned_cols=322  Identities=47%  Similarity=0.692  Sum_probs=294.6

Q ss_pred             CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      ...++|+|+|||||+++.|...+...++.+.. ++.|.+                                         
T Consensus         4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~-----------------------------------------   41 (325)
T 1bg2_A            4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVI-----------------------------------------   41 (325)
T ss_dssp             CSSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEE-----------------------------------------
T ss_pred             CCCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEE-----------------------------------------
Confidence            34689999999999999998888777666543 223322                                         


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI  172 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i  172 (705)
                        ..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+|+..|||||++.+||+.+
T Consensus        42 --~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i  119 (325)
T 1bg2_A           42 --ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI  119 (325)
T ss_dssp             --TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHH
T ss_pred             --CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHH
Confidence              136899999999999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      .....+..|.|+|||+|||||+|+|||++...              .+.+++++.++++|.||+++.|.|++|++.+|..
T Consensus       120 ~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~  185 (325)
T 1bg2_A          120 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT--------------NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDE  185 (325)
T ss_dssp             HHHCSSEEEEEEEEEEEEETTEEEESSCTTCC--------------SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHH
T ss_pred             HhccCCceEEEEEEEEEEecCeeeecccCCCC--------------CceEEECCCCCEEecCceEEeCCCHHHHHHHHHH
Confidence            88777899999999999999999999986532              2456999999999999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|++++|.||..|||||+||+|+|++.....                .....|+|+|||||||||.+++++.|.|++
T Consensus       186 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skl~lVDLAGSEr~~~t~~~g~rl~  249 (325)
T 1bg2_A          186 GKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----------------EQKLSGKLYLVDLAGSEKVSKTGAEGAVLD  249 (325)
T ss_dssp             HHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCSCCCCCCSSSCTTSC
T ss_pred             HHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC----------------CcEEEEEEEEEECCCCCcccccCCccccch
Confidence            9999999999999999999999999998765321                335679999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      |+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|
T Consensus       250 E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I  325 (325)
T 1bg2_A          250 EAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  325 (325)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence            99999999999999999999875 79999999999999999999999999999999999999999999999999986

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=4e-91  Score=756.80  Aligned_cols=340  Identities=44%  Similarity=0.695  Sum_probs=283.5

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .++|+|+|||||++..|...+...++.++.  +.+.+.+|..                                   ...
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~i~~~~~-----------------------------------~~~   45 (366)
T 2zfi_A            3 GASVKVAVRVRPFNSREMSRDSKCIIQMSG--STTTIVNPKQ-----------------------------------PKE   45 (366)
T ss_dssp             -CCEEEEEEECCCCHHHHHTTCCBCEEEET--TEEEECCTTC-----------------------------------TTS
T ss_pred             CCCcEEEEECCCCChhhccCCCCeEEEECC--CcEEEeccCC-----------------------------------CCC
Confidence            579999999999999999888887877763  4566655520                                   022


Q ss_pred             CCeeEeeceeeCCC--------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHH
Q psy11229         95 PPKTFTFDTVFDAN--------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFA  166 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~--------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~  166 (705)
                      ..+.|+||+||+++        ++|++||+.++.|+|+++|+|||+||||||||||||||||+|... ++..|||||+++
T Consensus        46 ~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~  124 (366)
T 2zfi_A           46 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCE  124 (366)
T ss_dssp             CCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHH
T ss_pred             CceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHH
Confidence            46899999999987        899999999999999999999999999999999999999999753 234699999999


Q ss_pred             HHHHhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHH
Q psy11229        167 HIFGHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD  245 (705)
Q Consensus       167 ~lF~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e  245 (705)
                      +||..+.... ....|.|+|||+|||||+|+|||++.....             +.|++++..|+||.||+++.|.|++|
T Consensus       125 ~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~-------------l~ire~~~~g~~v~gl~~~~V~s~~e  191 (366)
T 2zfi_A          125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN-------------LRVREHPLLGPYVEDLSKLAVTSYND  191 (366)
T ss_dssp             HHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSC-------------BCEEEETTTEEEETTCCCEECCSHHH
T ss_pred             HHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCC-------------ceEEEcCCCCEEEeCCEEEEECCHHH
Confidence            9999998653 467899999999999999999998765433             45599999999999999999999999


Q ss_pred             HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229        246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG  325 (705)
Q Consensus       246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~  325 (705)
                      ++.+|..|.++|++++|.||..|||||+||+|+|++.......            .......|+|+|||||||||..+++
T Consensus       192 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~  259 (366)
T 2zfi_A          192 IQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET------------NITTEKVSKISLVDLAGSERADSTG  259 (366)
T ss_dssp             HHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT------------TCEEEEEEEEEEEECCCGGGC----
T ss_pred             HHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC------------CccceeEeEEEEEeCCCCccccccC
Confidence            9999999999999999999999999999999999876422111            0023567999999999999999999


Q ss_pred             CccccHHHHHHhhhhHHHHHHHHHHHhcC-----------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHH
Q psy11229        326 ASGQRLKEASKINLSLSTLGNVISALVDG-----------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYE  394 (705)
Q Consensus       326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~-----------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~  394 (705)
                      +.|.|++|+.+||+||++||+||.||+++           +..|||||||||||||||+||||++|+|||||||+..+++
T Consensus       260 ~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~  339 (366)
T 2zfi_A          260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYD  339 (366)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHH
T ss_pred             CCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHH
Confidence            99999999999999999999999999873           3479999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccccccC
Q psy11229        395 ETISTLRYASRVKKICNKARVNQ  417 (705)
Q Consensus       395 ETlsTLrfa~rak~I~n~~~~n~  417 (705)
                      ||++||+||+|||+|+|+|.++.
T Consensus       340 ETlsTLrfA~rak~I~~~~~~~~  362 (366)
T 2zfi_A          340 ETLSTLRYADRAKQIRNTVSVNH  362 (366)
T ss_dssp             HHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHHhhccCCCCCCC
Confidence            99999999999999999998864

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-91  Score=760.62  Aligned_cols=344  Identities=42%  Similarity=0.674  Sum_probs=282.1

Q ss_pred             hcccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCC
Q psy11229          9 VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNP   88 (705)
Q Consensus         9 ~~~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   88 (705)
                      .......++|+|+|||||++..|...+...+|.+... ..+.+..+.                                 
T Consensus        16 ~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~---------------------------------   61 (373)
T 2wbe_C           16 QPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGP-REVVTRHTL---------------------------------   61 (373)
T ss_dssp             --CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETT-TEEEESSSS---------------------------------
T ss_pred             CCCcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCC-CeEEEecCC---------------------------------
Confidence            3444567899999999999999988777777776533 334333220                                 


Q ss_pred             CCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC--------CCCCCCc
Q psy11229         89 AGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN--------VPELKGI  160 (705)
Q Consensus        89 ~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~--------~~~~~GI  160 (705)
                         .....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...        .+...||
T Consensus        62 ---~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Gi  138 (373)
T 2wbe_C           62 ---DSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGI  138 (373)
T ss_dssp             ---SSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCH
T ss_pred             ---CCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcC
Confidence               01235889999999999999999999999999999999999999999999999999999764        2346799


Q ss_pred             hHHHHHHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC--CCcEEEccceEE
Q psy11229        161 IPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP--DIGVYVKDLSAY  238 (705)
Q Consensus       161 ipr~~~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~--~~gv~v~~l~~~  238 (705)
                      |||++++||+.+...  ...|.|+|||+|||||+|+|||++.....+             .+++++  .++++|.||+++
T Consensus       139 ipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l-------------~i~~~~~~~g~v~v~gl~~~  203 (373)
T 2wbe_C          139 IPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTDDTTKI-------------RIFDDSTKKGSVIIQGLEEI  203 (373)
T ss_dssp             HHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTTSCSCC-------------CEEECSSSSSCEEETTCCCE
T ss_pred             hHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCCCCCCc-------------eeEeccCCCCcEEecCceEE
Confidence            999999999999765  468999999999999999999987644333             346663  578999999999


Q ss_pred             EcCCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCC
Q psy11229        239 IANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG  317 (705)
Q Consensus       239 ~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAG  317 (705)
                      .|.|++|++.+|..|.++|++++|.||..|||||+||+|+|+.... ..+.              .....|+|+||||||
T Consensus       204 ~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~--------------~~~~~skL~lVDLAG  269 (373)
T 2wbe_C          204 PVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE--------------DMLKIGKLNLVDLAG  269 (373)
T ss_dssp             EESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTC--------------CEEEEEEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCC--------------cceeEEEEEEEECCC
Confidence            9999999999999999999999999999999999999999987542 1121              346789999999999


Q ss_pred             CccccccCCc-cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHH
Q psy11229        318 SERQAKTGAS-GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET  396 (705)
Q Consensus       318 SEr~~~t~~~-g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ET  396 (705)
                      |||..++++. |.|++|+.+||+||++||+||.||+++. .|||||||||||||||+||||++|+|||||||+..+++||
T Consensus       270 SEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ET  348 (373)
T 2wbe_C          270 SENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEET  348 (373)
T ss_dssp             C--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHH
T ss_pred             CCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHH
Confidence            9999999987 9999999999999999999999999865 7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccccccCCc
Q psy11229        397 ISTLRYASRVKKICNKARVNQDP  419 (705)
Q Consensus       397 lsTLrfa~rak~I~n~~~~n~~~  419 (705)
                      ++||+||+|||+|+|+|.+|++.
T Consensus       349 lsTLrfA~rak~I~n~p~vN~~~  371 (373)
T 2wbe_C          349 LSTLEYAHRAKNIQNKPEVNQKL  371 (373)
T ss_dssp             HHHHHHHHHHHTCEECCCCCEEC
T ss_pred             HHHHHHHHHHhhccccceecccc
Confidence            99999999999999999999864

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=1e-89  Score=741.21  Aligned_cols=332  Identities=42%  Similarity=0.658  Sum_probs=270.6

Q ss_pred             CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      .+.++|+|+|||||++++|...+...|+.+++..+.+.+.                                        
T Consensus         8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----------------------------------------   47 (344)
T 4a14_A            8 AEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG----------------------------------------   47 (344)
T ss_dssp             -CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET----------------------------------------
T ss_pred             ccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec----------------------------------------
Confidence            3578999999999999999988888888887766555442                                        


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC---CCCCCchHHHHHHHH
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIF  169 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~~~~GIipr~~~~lF  169 (705)
                        ..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....   ++..|||||++++||
T Consensus        48 --~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF  125 (344)
T 4a14_A           48 --RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAF  125 (344)
T ss_dssp             --TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHH
T ss_pred             --ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHH
Confidence              147899999999999999999999999999999999999999999999999999997421   345699999999999


Q ss_pred             HhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229        170 GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI  249 (705)
Q Consensus       170 ~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l  249 (705)
                      ..+... ....|.|+|||+|||||+|+|||++....            ..+.+++++.++++|.||+++.|.|++|++.+
T Consensus       126 ~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~l  192 (344)
T 4a14_A          126 KLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTAS------------RDIQLREDERGNVVLCGVKEVDVEGLDEVLSL  192 (344)
T ss_dssp             HHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCG------------GGCEEEECTTSCEEEESCCCEECCSHHHHHHH
T ss_pred             Hhcccc-cceeeEEEEehhhhhHHHHHHHHHhcccc------------ccceeeeccCCCEEEEeeeeccccCHHHHHHH
Confidence            999876 46899999999999999999999865321            12567999999999999999999999999999


Q ss_pred             HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229        250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ  329 (705)
Q Consensus       250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  329 (705)
                      |..|.++|++++|.||..|||||+||+|+|++........        .....+.+..|+|+|||||||||..++++.|.
T Consensus       193 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~--------~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~  264 (344)
T 4a14_A          193 LEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL--------PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE  264 (344)
T ss_dssp             HHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------------------CEEEEEEEEEECCCCCCC--------
T ss_pred             HHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccC--------CCccccceeeeeeeEEecccchhhcccCCchh
Confidence            9999999999999999999999999999998865221110        00112457789999999999999999999999


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHhcC--CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       330 rlkE~~~IN~SL~aL~~vI~aL~~~--~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      |++|+.+||+||++||+||.||+++  +..|||||||||||||||+||||++|+|||||||+..+|+||++||+||+|||
T Consensus       265 rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          265 RLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ  344 (344)
T ss_dssp             ------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             hhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence            9999999999999999999999875  34699999999999999999999999999999999999999999999999996

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=9.7e-90  Score=736.34  Aligned_cols=326  Identities=40%  Similarity=0.647  Sum_probs=277.4

Q ss_pred             CCCeEEEEEcCCCCCccccCC-CcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAG-HVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~-~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      .++|+|+|||||++..|...+ ...++.+++.++.+....+                                      .
T Consensus         3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~   44 (330)
T 2h58_A            3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH--------------------------------------K   44 (330)
T ss_dssp             --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE--------------------------------------T
T ss_pred             CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC--------------------------------------C
Confidence            589999999999999987543 3345666544332221111                                      1


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      ..++.|+||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|...+|   |||||++++||..+.
T Consensus        45 ~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~lF~~i~  120 (330)
T 2h58_A           45 GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---GINQRALQLLFSEVQ  120 (330)
T ss_dssp             TEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHHH
T ss_pred             CCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCC---cHHHHHHHHHHHhhh
Confidence            1257899999999999999999985 899999999999999999999999999999976554   999999999999998


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      .......|.|+|||+|||||+|+|||++.+...+.+           .+.+++.++++|.||+++.|.|++|++.+|..|
T Consensus       121 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i-----------~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g  189 (330)
T 2h58_A          121 EKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI-----------RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFG  189 (330)
T ss_dssp             TSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC-----------EECTTSSCCEECTTCCCEEECSHHHHHHHHHHH
T ss_pred             cccCCceEEEEEEEEEEECCChhhcccccccccceE-----------EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHH
Confidence            877788999999999999999999998764433322           234678899999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..++++.|.|++|
T Consensus       190 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E  253 (330)
T 2h58_A          190 HTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST----------------GLRTTGKLNLVDLAGSERVGKSGAEGSRLRE  253 (330)
T ss_dssp             HHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCCCCC------HHHHH
T ss_pred             HhhCCcccccCCCCcCCccEEEEEEEEEEecCC----------------CcEEEEEEEEEeCCCCCcccccCCchhhhHH
Confidence            999999999999999999999999998765322                3456899999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC  410 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~  410 (705)
                      +.+||+||++||+||.||+++. .||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||+|+
T Consensus       254 ~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~  329 (330)
T 2h58_A          254 AQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred             HHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence            9999999999999999999865 799999999999999999999999999999999999999999999999999985

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-89  Score=742.69  Aligned_cols=339  Identities=38%  Similarity=0.566  Sum_probs=268.6

Q ss_pred             CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      ...++|||||||||++..|..     ++.+..+...|.+..+.....                     +  .+     ..
T Consensus        21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~---------------------~--~~-----~~   67 (359)
T 3nwn_A           21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRR---------------------G--VV-----NN   67 (359)
T ss_dssp             ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSH---------------------H--HH-----TT
T ss_pred             CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCcccc---------------------c--cc-----cC
Confidence            446899999999999877643     455666667777776531100                     0  00     01


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI  172 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i  172 (705)
                      ....++|+||+||+ +++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+++..|||||++++||+.+
T Consensus        68 ~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~  146 (359)
T 3nwn_A           68 QQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMI  146 (359)
T ss_dssp             SCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHH
T ss_pred             CcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHh
Confidence            23457899999997 68999999999999999999999999999999999999999998877777899999999999998


Q ss_pred             hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      .... ...|.|+|||+|||||+|+|||++.+....        ....+.+++++ .|++|.|++++.|.+++|++.+|..
T Consensus       147 ~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~--------~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~  216 (359)
T 3nwn_A          147 EERP-THAITVRVSYLEIYNESLFDLLSTLPYVGP--------SVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFE  216 (359)
T ss_dssp             HTCT-TSCEEEEEEEEEEETTEEEETTSSSTTSCT--------TTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHH
T ss_pred             hcCC-CCcEEEEEEEEEEecccccccccccccccc--------ccccceEEecC-CceEEeccEEEEecCHHHHHHHHHh
Confidence            7754 678999999999999999999987543211        11224456666 4799999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|++++|.||..|||||+||+|+|+......+.              .....|+|+|||||||||..++++.|+|++
T Consensus       217 g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~--------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  282 (359)
T 3nwn_A          217 GETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE--------------EKYITSKINLVDLAGSERLGKSGSEGQVLK  282 (359)
T ss_dssp             HHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------------------CCEEEEEEEEECCCCC-------------
T ss_pred             hhhhcccccccCccccCcceEEEEEEEEeecccccC--------------cccccccceeeeccccccccccCCchhHHH
Confidence            999999999999999999999999999876532222              446689999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      |+.+||+||++||+||.||++++..|||||||||||||||+|||||+|+|||||||+..+|+||++||+||+|||+|
T Consensus       283 E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          283 EATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             ---CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999987789999999999999999999999999999999999999999999999999987

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=8.6e-89  Score=735.51  Aligned_cols=335  Identities=46%  Similarity=0.706  Sum_probs=262.9

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .+|+|+|||||++.+|...+...++.++.  +.+.+..|....                             +.......
T Consensus         1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~--~~~~~~~~~~~~-----------------------------~~~~~~~~   49 (354)
T 3gbj_A            1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA--NKVILNPVNTNL-----------------------------SKGDARGQ   49 (354)
T ss_dssp             -CEEEEEEECCCCHHHHHHTCCBCEEEET--TEEEECCC----------------------------------------C
T ss_pred             CCcEEEEECCCCChhhhccCCceEEEeCC--CeEEEeCCcccc-----------------------------ccccccCC
Confidence            47999999999999999888888888763  455554331000                             00111334


Q ss_pred             CeeEeeceee--------CCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229         96 PKTFTFDTVF--------DANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH  167 (705)
Q Consensus        96 ~~~F~FD~Vf--------~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~  167 (705)
                      ++.|+||+||        ++.++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+   |||||++++
T Consensus        50 ~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~  126 (354)
T 3gbj_A           50 PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP---GLIPRLCSG  126 (354)
T ss_dssp             CEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSB---CHHHHHHHH
T ss_pred             ceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCC---chhhHHHHH
Confidence            7899999999        45689999999999999999999999999999999999999999987655   999999999


Q ss_pred             HHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229        168 IFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM  246 (705)
Q Consensus       168 lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~  246 (705)
                      ||..+... .....|.|+|||+|||||+|+|||++....            ..+.++|++..|+||.||+++.|.|++|+
T Consensus       127 lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~  194 (354)
T 3gbj_A          127 LFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSR------------QTLKVREHSVLGPYVDGLSKLAVTSYKDI  194 (354)
T ss_dssp             HHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------------------CBCBC------CCBTTCCCEEECSHHHH
T ss_pred             HHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCC------------cceEEEEcCCCCEEEEeeEEEecCCHHHH
Confidence            99998754 346789999999999999999999875321            12456999999999999999999999999


Q ss_pred             HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229        247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA  326 (705)
Q Consensus       247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~  326 (705)
                      +.+|..|.++|++++|.||..|||||+||+|+|++.......            .......|+|+|||||||||..++++
T Consensus       195 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~~  262 (354)
T 3gbj_A          195 ESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS------------GTSGEKVGKLSLVDLAGSERATKTGA  262 (354)
T ss_dssp             HHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTS------------CEEEEEEEEEEEEECCCCCCCCCCC-
T ss_pred             HHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCC------------CCCCeeEEEEEEEECCCCCchhhcCC
Confidence            999999999999999999999999999999999875311100            01345689999999999999999999


Q ss_pred             ccccHHHHHHhhhhHHHHHHHHHHHhc-----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHH
Q psy11229        327 SGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLR  401 (705)
Q Consensus       327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~-----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLr  401 (705)
                      .|+|++|+.+||+||++||+||.||++     ++..|||||||||||||||+||||++|+|||||||+..+|+|||+|||
T Consensus       263 ~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr  342 (354)
T 3gbj_A          263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLR  342 (354)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             ccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHH
Confidence            999999999999999999999999986     345799999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy11229        402 YASRVKK  408 (705)
Q Consensus       402 fa~rak~  408 (705)
                      ||.||+.
T Consensus       343 ~a~~~~~  349 (354)
T 3gbj_A          343 YADRAKH  349 (354)
T ss_dssp             HHHHHC-
T ss_pred             HHHHhhh
Confidence            9999985

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-88  Score=735.36  Aligned_cols=343  Identities=37%  Similarity=0.540  Sum_probs=254.3

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEe------CCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVD------LLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKN   87 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~------~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   87 (705)
                      ..++|||||||||+++.|...++..++...      ..+..|.+..|.....                        .+. 
T Consensus        20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~-   74 (376)
T 2rep_A           20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRG------------------------TLS-   74 (376)
T ss_dssp             ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC----------------------------------
T ss_pred             cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCcccc------------------------ccc-
Confidence            368999999999999999876543221111      2334455543311000                        000 


Q ss_pred             CCCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC-CCCCCCchHHHHH
Q psy11229         88 PAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN-VPELKGIIPNSFA  166 (705)
Q Consensus        88 ~~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~-~~~~~GIipr~~~  166 (705)
                       ........+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|... .++..|||||+++
T Consensus        75 -~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~  152 (376)
T 2rep_A           75 -GAPAPPPRHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALR  152 (376)
T ss_dssp             ---------CEEECSEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHH
T ss_pred             -cccCCCCceeeeecEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHH
Confidence             000112357899999999999999999986 5899999999999999999999999999999764 3456799999999


Q ss_pred             HHHHhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec--CCCcEEEccceEEEcCCH
Q psy11229        167 HIFGHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER--PDIGVYVKDLSAYIANNA  243 (705)
Q Consensus       167 ~lF~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~gv~v~~l~~~~v~s~  243 (705)
                      +||..+.... ..+.|.|+|||+|||||+|+|||++.....         ....+.++++  +.++++|.||+++.|.++
T Consensus       153 ~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~---------~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~  223 (376)
T 2rep_A          153 HLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKG---------QGGECEIRRAGPGSEELTVTNARYVPVSCE  223 (376)
T ss_dssp             HHHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC-----------------CCEEEC---CCCEEETTCCCEEECSH
T ss_pred             HHHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccc---------cCCCceEEeccCCCCCEEECCcEEEEeCCH
Confidence            9999998643 467999999999999999999998753210         0112455777  678999999999999999


Q ss_pred             HHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccc
Q psy11229        244 DDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAK  323 (705)
Q Consensus       244 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~  323 (705)
                      +|++.+|..|.++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..+
T Consensus       224 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~  287 (376)
T 2rep_A          224 KEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSR----------------GLQCGAPLSLVDLAGSERLDP  287 (376)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSS----------------CCEEEEEEEEEECCCCC----
T ss_pred             HHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC----------------CcEEEeEEEEEECCCCccccc
Confidence            9999999999999999999999999999999999998765322                335679999999999999999


Q ss_pred             cCCcc----ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHH
Q psy11229        324 TGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST  399 (705)
Q Consensus       324 t~~~g----~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsT  399 (705)
                      +++.|    +|++|+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+|+|||+|
T Consensus       288 t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsT  366 (376)
T 2rep_A          288 GLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNS  366 (376)
T ss_dssp             --------------------CHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHH
T ss_pred             ccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHH
Confidence            99999    999999999999999999999999865 7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q psy11229        400 LRYASRVKKI  409 (705)
Q Consensus       400 Lrfa~rak~I  409 (705)
                      |+||+|++++
T Consensus       367 LrfA~Rv~~~  376 (376)
T 2rep_A          367 LRFASKVNQC  376 (376)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHhcC
Confidence            9999999863

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=1.2e-88  Score=734.61  Aligned_cols=336  Identities=35%  Similarity=0.507  Sum_probs=281.4

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|||+|||||++..|...+...+|.+.. +..|.+.+|...                  .+.            ......
T Consensus         1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~-~~~i~i~~~~~~------------------~~~------------~~~~~~   49 (360)
T 1ry6_A            1 MIKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYK------------------VDM------------TKYIER   49 (360)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEEE-TTEEEEEEEEEE------------------TTT------------EEEEEE
T ss_pred             CeEEEEECCCCChHHhccCCceEEEECC-CCEEEEeCCccc------------------ccc------------cccccc
Confidence            6999999999999999888888888753 456666655210                  000            000124


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhC-CCCEEEEEeccCCCCccccccccCC--CCCCCCchHHHHHHHHHhhh
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLS-GFNGTIFAYGQTGTGKTFTMEGVNN--VPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~-G~N~tIfaYGqTgSGKT~Tm~G~~~--~~~~~GIipr~~~~lF~~i~  173 (705)
                      +.|+||+||+++++|++||+.++.|+|+++++ |||+||||||||||||||||+|...  .++..|||||++.+||..+.
T Consensus        50 ~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~  129 (360)
T 1ry6_A           50 HEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLN  129 (360)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHH
T ss_pred             ceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999996 9999999999999999999999752  23456999999999999998


Q ss_pred             hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      .......|.|+|||+|||||+|+|||++...               +.+++++..+++|.||+++.|.|++|++.+|..|
T Consensus       130 ~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~---------------~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g  194 (360)
T 1ry6_A          130 IYDKDNTKGIFISFYEIYCGKLYDLLQKRKM---------------VAALENGKKEVVVKDLKILRVLTKEELILKMIDG  194 (360)
T ss_dssp             HHCSSSCEEEEEEEEEEETTEEEESCCC--------------------------CCBCGGGSCCEEECSHHHHHHHHHHH
T ss_pred             hhccCCceEEEEEEEEeeCCeeEEcccCCcc---------------ceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHH
Confidence            8766788999999999999999999986432               2347888999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcc-ccHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASG-QRLK  332 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g-~rlk  332 (705)
                      .++|++++|.||..|||||+||+|+|++..                   .....|+|+|||||||||..++++.| .+++
T Consensus       195 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------------------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~  255 (360)
T 1ry6_A          195 VLLRKIGVNSQNDESSRSHAILNIDLKDIN-------------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQT  255 (360)
T ss_dssp             HHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHH
T ss_pred             hhhhhcccccccCCCccceEEEEEEEEecc-------------------CCcceeEEEEEECCCCccccccccccccchH
Confidence            999999999999999999999999997642                   23457999999999999999999876 5789


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      |+.+||+||++||+||.||..++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|.
T Consensus       256 E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~  334 (360)
T 1ry6_A          256 DGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNS  334 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999998765 79999999999999999999999999999999999999999999999999999997


Q ss_pred             ccccCC
Q psy11229        413 ARVNQD  418 (705)
Q Consensus       413 ~~~n~~  418 (705)
                      |..|..
T Consensus       335 ~~~~~~  340 (360)
T 1ry6_A          335 KLEGKP  340 (360)
T ss_dssp             ------
T ss_pred             cccCCC
Confidence            765543

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=6.5e-88  Score=727.93  Aligned_cols=338  Identities=36%  Similarity=0.540  Sum_probs=260.6

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeC-CCC--EEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDL-LNG--IITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS   91 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~-~~~--~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (705)
                      .+||||||||||++..|...+...++.... ..+  .+.+..+                                  .  
T Consensus         4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~--   47 (349)
T 3t0q_A            4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN----------------------------------E--   47 (349)
T ss_dssp             -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC----------------------------------C--
T ss_pred             CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC----------------------------------C--
Confidence            489999999999999997765443332111 111  2222221                                  1  


Q ss_pred             CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229         92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~  171 (705)
                      .....+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|..     .|||||++++||..
T Consensus        48 ~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~-----~Giipr~~~~lF~~  121 (349)
T 3t0q_A           48 GRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKW  121 (349)
T ss_dssp             --CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT-----TSHHHHHHHHHHHH
T ss_pred             CcccceeeecCEEECCCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC-----CchhhHHHHHHHHH
Confidence            122357899999999999999999985 699999999999999999999999999999953     39999999999999


Q ss_pred             hhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC-CCcEEEccceEEEcCCHHHHHHH
Q psy11229        172 IAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP-DIGVYVKDLSAYIANNADDMEKI  249 (705)
Q Consensus       172 i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~-~~gv~v~~l~~~~v~s~~e~~~l  249 (705)
                      +.... ..+.|.|+|||+|||||+|+|||++...... .  ........+.+++++ .+|+||.||+++.|.|++|++.+
T Consensus       122 ~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-~--~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~l  198 (349)
T 3t0q_A          122 TANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN-I--DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTI  198 (349)
T ss_dssp             HHHHGGGTEEEEEEEEEEEEETTEEEETTC------------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHH
T ss_pred             HHHhhhcCceeEEEEEEEEEEcchhhccccccccccc-c--ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHH
Confidence            98643 3679999999999999999999987542110 0  000112235566665 45799999999999999999999


Q ss_pred             HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229        250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ  329 (705)
Q Consensus       250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  329 (705)
                      |..|.++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..++++.|+
T Consensus       199 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~~t~~~g~  262 (349)
T 3t0q_A          199 LKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT----------------GETSQGKLNLVDLAGSERINSSAVTGE  262 (349)
T ss_dssp             HHHC------------CTGGGSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCCCC----CCH
T ss_pred             HHHHHHhCcccccccccccCCcceEEEEEEEEEecCC----------------CCeeEEEEEEEeCCCCCccccccCccc
Confidence            9999999999999999999999999999998765332                235679999999999999999999999


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        330 RLKEASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       330 rlkE~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      |++|+.+||+||++||+||.||+++..  .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|++
T Consensus       263 rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~  342 (349)
T 3t0q_A          263 RLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVN  342 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHH
T ss_pred             cchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhh
Confidence            999999999999999999999987643  599999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy11229        408 KICNKA  413 (705)
Q Consensus       408 ~I~n~~  413 (705)
                      +|+..+
T Consensus       343 ~ik~~~  348 (349)
T 3t0q_A          343 STKIAK  348 (349)
T ss_dssp             C-----
T ss_pred             hcccCC
Confidence            997654

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=3.9e-88  Score=734.08  Aligned_cols=332  Identities=39%  Similarity=0.542  Sum_probs=263.0

Q ss_pred             CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      .+.++|+|+|||||++..|...+...+|.++ .++.+.+.+|....                  +            ...
T Consensus        48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~v~~~~~~~------------------~------------~~~   96 (387)
T 2heh_A           48 IEEHRICVCVRKRPLNKQELAKKEIDVISIP-SKCLLLVHEPKLKV------------------D------------LTK   96 (387)
T ss_dssp             CCCCSEEEEEEECCCCHHHHHTTCCBCEECC-BSSEEEEEEEEECT------------------T------------CCE
T ss_pred             CCCCCeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCCccc------------------c------------ccc
Confidence            3478999999999999999988888888774 34566666552100                  0            000


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHH
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIF  169 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF  169 (705)
                      ....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...   .+...|||||++.+||
T Consensus        97 ~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF  176 (387)
T 2heh_A           97 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVF  176 (387)
T ss_dssp             EEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHH
T ss_pred             cccccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHH
Confidence            0124789999999999999999999999999999999999999999999999999999632   2235699999999999


Q ss_pred             HhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHH
Q psy11229        170 GHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK  248 (705)
Q Consensus       170 ~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~  248 (705)
                      ..+.... ....|.|+|||+|||||+|+|||++..               .+.++|++.++++|.||+++.|.|++|++.
T Consensus       177 ~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~---------------~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~  241 (387)
T 2heh_A          177 LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA---------------KLRVLEDGKQQVQVVGLQEHLVNSADDVIK  241 (387)
T ss_dssp             HHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTTE---------------ECEEEECTTCCEEEETCCCEEESSHHHHHH
T ss_pred             HHhhcccccCceEEEEEEEEEecCCeEEECCCCCc---------------cceEEEcCCCCEEecCCEEEEeCCHHHHHH
Confidence            9987532 356899999999999999999998642               256699999999999999999999999999


Q ss_pred             HHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Cc
Q psy11229        249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-AS  327 (705)
Q Consensus       249 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~  327 (705)
                      +|..|.++|++++|.||..|||||+||+|.|++..                     ...|+|+|||||||||..+++ +.
T Consensus       242 ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------------------~~~skL~lVDLAGSER~~~t~~~~  300 (387)
T 2heh_A          242 MIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG---------------------RMHGKFSLVDLAGNERGADTSSAD  300 (387)
T ss_dssp             HHHHHHHHC---------CGGGSEEEEEEEEESSS---------------------SEEEEEEEEECCCCC---------
T ss_pred             HHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC---------------------eeeeEEEEEECCCCcccccccccc
Confidence            99999999999999999999999999999997531                     246999999999999998886 46


Q ss_pred             cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhcc-CCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHh
Q psy11229        328 GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRV  406 (705)
Q Consensus       328 g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqds-LgGnskt~mI~~isP~~~~~~ETlsTLrfa~ra  406 (705)
                      +.+++|+.+||+||++||+||.||++++ .|||||||||||||||+ ||||++|+|||||||+..+++||++||+||+||
T Consensus       301 ~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~ra  379 (387)
T 2heh_A          301 RQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV  379 (387)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHh
Confidence            7889999999999999999999999865 79999999999999999 699999999999999999999999999999999


Q ss_pred             hccccc
Q psy11229        407 KKICNK  412 (705)
Q Consensus       407 k~I~n~  412 (705)
                      |+|++.
T Consensus       380 k~I~~~  385 (387)
T 2heh_A          380 KELSPH  385 (387)
T ss_dssp             CC----
T ss_pred             ccCcCC
Confidence            999865

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=2.1e-87  Score=722.88  Aligned_cols=293  Identities=40%  Similarity=0.598  Sum_probs=245.3

Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      ..+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|..     .|||||++++||..+..
T Consensus        50 ~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~-----~Giipr~~~~lF~~i~~  123 (347)
T 1f9v_A           50 QVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINK  123 (347)
T ss_dssp             CEEEEEESEEECTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHH
T ss_pred             CceEEeeCEEECCCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCCC-----CCchHHHHHHHHHHHHh
Confidence            358899999999999999999985 699999999999999999999999999999953     49999999999999976


Q ss_pred             cC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec-CCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        175 AD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER-PDIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       175 ~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      .. ..+.|.|+|||+|||||+|+|||++........     .....+.++++ +.++++|.||+++.|.++++++.+|..
T Consensus       124 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~  198 (347)
T 1f9v_A          124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKK  198 (347)
T ss_dssp             HGGGTCEEEEEEEEEEEETTEEEETTC------------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHH
T ss_pred             hhhcCCceEEEEEEEEEECCeeeeccCCcccccccc-----ccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHH
Confidence            43 367899999999999999999998764321100     01123456766 467899999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|++++|.||..|||||+||+|+|++.....                +....|+|+|||||||||..++++.|+|++
T Consensus       199 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  262 (347)
T 1f9v_A          199 ANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT----------------GAHSYGTLNLVDLAGSERINVSQVVGDRLR  262 (347)
T ss_dssp             HC-----------CCGGGSEEEEEEEEEEECC------------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHH
T ss_pred             HHhccceeeccCCCCCCCceEEEEEEEEEecCCC----------------CceeeeEEEEEECCCCccccccccchhhhH
Confidence            9999999999999999999999999998765322                335679999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC  410 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~  410 (705)
                      |+.+||+||++||+||.||++++  ..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|+++|+
T Consensus       263 E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~  342 (347)
T 1f9v_A          263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR  342 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999998865  4799999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy11229        411 NKAR  414 (705)
Q Consensus       411 n~~~  414 (705)
                      ..++
T Consensus       343 ~~~r  346 (347)
T 1f9v_A          343 LVSR  346 (347)
T ss_dssp             TC--
T ss_pred             cCCC
Confidence            8775

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=6.9e-88  Score=736.32  Aligned_cols=333  Identities=39%  Similarity=0.554  Sum_probs=267.0

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      +.++|+|+|||||++..|...++..+|.++ .++.+.+.+|....                  +            ....
T Consensus        69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-~~~~v~v~~~~~~~------------------~------------~~~~  117 (410)
T 1v8k_A           69 EEHRICVCVRKRPLNKQELAKKEIDVISVP-SKCLLLVHEPKLKV------------------D------------LTKY  117 (410)
T ss_dssp             SCCCEEEEEEECCCCHHHHHTTCCBCEECC-SSSEEEEEEEEECT------------------T------------CCEE
T ss_pred             CCCCeEEEEEeCCCChhHhhcCCccEEEEC-CCCEEEEecCcccc------------------c------------cccc
Confidence            478999999999999999988888888775 34566666542100                  0            0000


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHHH
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFG  170 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF~  170 (705)
                      ...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...   .+...|||||++.+||.
T Consensus       118 ~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~  197 (410)
T 1v8k_A          118 LENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFL  197 (410)
T ss_dssp             EEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHH
T ss_pred             ccceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHH
Confidence            124789999999999999999999999999999999999999999999999999999632   23457999999999999


Q ss_pred             hhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229        171 HIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI  249 (705)
Q Consensus       171 ~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l  249 (705)
                      .+.... ....|.|+|||+|||||+|+|||++..               .+.+++++.++++|.||+++.|.|++|++.+
T Consensus       198 ~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~---------------~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~l  262 (410)
T 1v8k_A          198 LKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA---------------KLRVLEDSRQQVQVVGLQEYLVTCADDVIKM  262 (410)
T ss_dssp             HHTSHHHHTTCCEEEEEEEEEETTEEEETTTTTE---------------EEEEEECSSCCEEEETCCCEEESSHHHHHHH
T ss_pred             HHhhhcccCccEEEEEEEEEeeCCEEEECCCCCC---------------CceEEECCCCCeEecCCEEEEeCCHHHHHHH
Confidence            987532 357899999999999999999998642               2567999999999999999999999999999


Q ss_pred             HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Ccc
Q psy11229        250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASG  328 (705)
Q Consensus       250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g  328 (705)
                      |..|.++|++++|.||..|||||+||+|+|++..                     ...|+|+|||||||||..+++ +.|
T Consensus       263 l~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------------------~~~skL~lVDLAGSER~~~t~~~~~  321 (410)
T 1v8k_A          263 INMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------------------RLHGKFSLVDLAGNERGADTSSADR  321 (410)
T ss_dssp             HHHHHHTCC--------CCCSSEEEEEEEEESSS---------------------SEEEEEEEEECCCCCC---------
T ss_pred             HHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC---------------------cceeEEEEEECCCcccccccccccc
Confidence            9999999999999999999999999999997531                     246999999999999999887 467


Q ss_pred             ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhcc-CCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqds-LgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      .+++|+.+||+||++||+||.||+.++ .||||||||||+||||| |||||+|+|||||||+..+++||++||+||+|||
T Consensus       322 ~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak  400 (410)
T 1v8k_A          322 QTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK  400 (410)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhc
Confidence            888999999999999999999998765 79999999999999999 6999999999999999999999999999999999


Q ss_pred             ccccccc
Q psy11229        408 KICNKAR  414 (705)
Q Consensus       408 ~I~n~~~  414 (705)
                      +|..+|.
T Consensus       401 ~i~~~~~  407 (410)
T 1v8k_A          401 ELSHHHH  407 (410)
T ss_dssp             TTC----
T ss_pred             cCCCCCC
Confidence            9976653

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-86  Score=724.64  Aligned_cols=293  Identities=41%  Similarity=0.609  Sum_probs=249.3

Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      ..+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|..     .|||||++.+||..+..
T Consensus       106 ~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~-----~Giipr~~~~lF~~i~~  179 (403)
T 4etp_A          106 QVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINK  179 (403)
T ss_dssp             EEEEEEESEEECTTCCHHHHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHH
T ss_pred             CceEEEcCEEECCCCchHHHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCCC-----CccchhHHHHHHHHHHh
Confidence            358899999999999999999985 589999999999999999999999999999953     39999999999999986


Q ss_pred             c-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC-CCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229        175 A-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP-DIGVYVKDLSAYIANNADDMEKIMSL  252 (705)
Q Consensus       175 ~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~-~~gv~v~~l~~~~v~s~~e~~~ll~~  252 (705)
                      . ...+.|.|+|||+|||||+|+|||++........     .....+.+++++ .++++|.|++++.|.|+++++.+|..
T Consensus       180 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~  254 (403)
T 4etp_A          180 LKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKK  254 (403)
T ss_dssp             HHTTTEEEEEEEEEEEEETTEEEETTCC-------------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHH
T ss_pred             hhccCceEEEEEEEEEEecceeeEccCCcccccccc-----ccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHH
Confidence            4 3468999999999999999999998764321100     011224556665 56799999999999999999999999


Q ss_pred             hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229        253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK  332 (705)
Q Consensus       253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk  332 (705)
                      |.++|++++|.||..|||||+||+|+|.+.....                +....|+|+|||||||||..++++.|.|++
T Consensus       255 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~  318 (403)
T 4etp_A          255 ANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT----------------GAHSYGTLNLVDLAGSERINVSQVVGDRLR  318 (403)
T ss_dssp             HC--C----CHHHHHHHTSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCCCCCSSCCHHHHH
T ss_pred             HHHhcccccccCCcccCCcccEEEEEEEEeecCC----------------CCeeEEEEEEEECCCCccccccCChhHHHH
Confidence            9999999999999999999999999998765332                234579999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229        333 EASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC  410 (705)
Q Consensus       333 E~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~  410 (705)
                      |+.+||+||++||+||.||+++..  .||||||||||+||||||||||+|+|||||||+..+|+||++||+||+|+++|+
T Consensus       319 E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~  398 (403)
T 4etp_A          319 ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR  398 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999987543  599999999999999999999999999999999999999999999999999998


Q ss_pred             cccc
Q psy11229        411 NKAR  414 (705)
Q Consensus       411 n~~~  414 (705)
                      ..|+
T Consensus       399 ~~~r  402 (403)
T 4etp_A          399 LVSR  402 (403)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8775

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=5.9e-86  Score=709.58  Aligned_cols=316  Identities=34%  Similarity=0.529  Sum_probs=244.7

Q ss_pred             cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCC-CCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229         12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLL-NGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG   90 (705)
Q Consensus        12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~-~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   90 (705)
                      ..+.++|||+|||||+++.|.. ++..++.+.+. ++...+                                       
T Consensus        18 ~~~~~~VrV~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~---------------------------------------   57 (344)
T 3dc4_A           18 GAKLSAVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLI---------------------------------------   57 (344)
T ss_dssp             -CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE---------------------------------------
T ss_pred             CCCCCCeEEEEECCCCCccccc-CCceEEEecCCCCCceEE---------------------------------------
Confidence            4557899999999999987732 33334433210 000000                                       


Q ss_pred             CCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHH
Q psy11229         91 SAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAH  167 (705)
Q Consensus        91 ~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~  167 (705)
                         ...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||.|...   .++..|||||++++
T Consensus        58 ---~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~  134 (344)
T 3dc4_A           58 ---VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGD  134 (344)
T ss_dssp             ---ETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHH
T ss_pred             ---ecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHH
Confidence               124789999999999999999999999999999999999999999999999999998643   24567999999999


Q ss_pred             HHHhhhhcCC--CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHH
Q psy11229        168 IFGHIAKADE--SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD  245 (705)
Q Consensus       168 lF~~i~~~~~--~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e  245 (705)
                      ||+.+.....  ...|.|+|||+|||||+|+|||++......                    .+..+.|++++.|.|++|
T Consensus       135 LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~--------------------~~~~~~~~~~~~v~s~~e  194 (344)
T 3dc4_A          135 IFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPM--------------------VAARCQRCTCLPLHSQAD  194 (344)
T ss_dssp             HHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTSBC--------------------CSSTTTCSCCEECSSHHH
T ss_pred             HHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCCcc--------------------ccccccCceecccCCHHH
Confidence            9999976543  357999999999999999999987643211                    112245889999999999


Q ss_pred             HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229        246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG  325 (705)
Q Consensus       246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~  325 (705)
                      ++.+|..|.++|++++|.||..|||||+||+|+|+..                      ...|+|+|||||||||..+++
T Consensus       195 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------------------~~~skl~lVDLAGSEr~~~t~  252 (344)
T 3dc4_A          195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------------------THHSRMNIVDLAGSEGVRRTG  252 (344)
T ss_dssp             HHHHHHHHHHTCC----------CCEEEEEEEEEECS----------------------SCEEEEEEEECCCCCCC----
T ss_pred             HHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------------------CcEEEEEEEECCCCccccccc
Confidence            9999999999999999999999999999999999642                      246899999999999999999


Q ss_pred             CccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHH
Q psy11229        326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASR  405 (705)
Q Consensus       326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~r  405 (705)
                      +.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|
T Consensus       253 ~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~r  331 (344)
T 3dc4_A          253 HEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTS  331 (344)
T ss_dssp             ---------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999876 7999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccc
Q psy11229        406 VKKICNKA  413 (705)
Q Consensus       406 ak~I~n~~  413 (705)
                      |+.....|
T Consensus       332 a~~~~~~~  339 (344)
T 3dc4_A          332 AKAAALEH  339 (344)
T ss_dssp             HHHHTTTC
T ss_pred             HhhcCCCC
Confidence            99876554

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=1.9e-85  Score=720.61  Aligned_cols=327  Identities=35%  Similarity=0.568  Sum_probs=266.6

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .+||+|||||||+++.|...++  ++....+...|.+..+..                                ......
T Consensus        58 ~gnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~--------------------------------~~~~~~  103 (412)
T 3u06_A           58 RDNIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDA--------------------------------QAKSKM  103 (412)
T ss_dssp             TCSEEEEEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC---------------------------------------
T ss_pred             CCCEEEEEEcCCCCchhccCcc--eEEEecCCCEEEEecCCc--------------------------------cccccc
Confidence            5899999999999999865543  232333445666654411                                000112


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      ..+.|+||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|.+..+   |||||++++||..+..
T Consensus       104 ~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~~  179 (412)
T 3u06_A          104 GQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV---GVIPRTVDLLFDSIRG  179 (412)
T ss_dssp             CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEE---CHHHHHHHHHHHHHHH
T ss_pred             CceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCC---ccHHHHHHHHHHhhhh
Confidence            35789999999999999999986 5799999999999999999999999999999976554   9999999999999976


Q ss_pred             cC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        175 AD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       175 ~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      .. ..+.|.|+|||+|||||.|+|||++.... +.           +.+.+++.+++||.||+++.|.++++++.+|..|
T Consensus       180 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-~~-----------i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g  247 (412)
T 3u06_A          180 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD-ME-----------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA  247 (412)
T ss_dssp             HGGGTEEEEEEEEEEEEETTEEEETTCCSCCC-CC-----------EEECSSCTTSEEETTCCCEECCSHHHHHHHHHHH
T ss_pred             hcccCceEEEEEEEEEEeCCeeEEcCCCCCCC-ce-----------eeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHH
Confidence            43 46899999999999999999999765331 11           2335678899999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|++++|.||..|||||+||+|+|.+.....                .....|+|+|||||||||..    .|.|++|
T Consensus       248 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~----~~~rl~E  307 (412)
T 3u06_A          248 KMNRATASTAGNERSSRSHAVTKLELIGRHAEK----------------QEISVGSINLVDLAGSESPK----TSTRMTE  307 (412)
T ss_dssp             HHHCC-----CHHHHTTCEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCCC-------------
T ss_pred             HhcccccccCCCCCCcCceEEEEEEEEEEeCCC----------------CCEEEEEEEEEECCCCCcCC----ccchhHh
Confidence            999999999999999999999999998765322                34668999999999999974    4689999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK  412 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~  412 (705)
                      +.+||+||++||+||.||+++. .||||||||||+||||||||||+|+|||||||+..+|+||++||+||+|+++|+..
T Consensus       308 ~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~  385 (412)
T 3u06_A          308 TKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT  385 (412)
T ss_dssp             -CTTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999864 79999999999999999999999999999999999999999999999999999844

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=1.3e-79  Score=724.53  Aligned_cols=335  Identities=38%  Similarity=0.553  Sum_probs=253.7

Q ss_pred             CCCCeEEEEEcC----CCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCC
Q psy11229         14 EIENVRVFVRVR----PLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPA   89 (705)
Q Consensus        14 ~~~~VkV~vRvR----Pl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   89 (705)
                      -.+++|||||||    |.+..|.+.|..          .+.+..|.+.....                  ...+.+.++.
T Consensus       372 il~~~rV~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~------------------~~~~~~~~~~  423 (715)
T 4h1g_A          372 LKGNIRVFCRIRNVSSSSSSSSSSSSED----------IIQYEAPQDINDES------------------KQELVITRNI  423 (715)
T ss_dssp             SSCSEEEEEEECCCC-----------------------BCEEECCC-------------------------CEEEEEEEE
T ss_pred             HHhcCeEEEEEecccccccccccccccc----------ceeccCCCCCCCCC------------------CCeEEEcCCC
Confidence            368999999999    555555544433          23333443222211                  1222222222


Q ss_pred             CCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHH
Q psy11229         90 GSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIF  169 (705)
Q Consensus        90 ~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF  169 (705)
                      .+ ....++|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|..     .|||||++++||
T Consensus       424 ~~-~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~-----~Giipr~~~~lf  496 (715)
T 4h1g_A          424 NN-NFSNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT-----NGMIPLSLKKIF  496 (715)
T ss_dssp             TT-EEEEEEEECSEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTT-----TSHHHHHHHHHH
T ss_pred             CC-CCCCeEEEeceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCCC-----CCcHHHHHHHHH
Confidence            22 33468999999999999999999875 599999999999999999999999999999942     499999999999


Q ss_pred             Hhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec-CCCcEEEccceEEEcCCHHHHH
Q psy11229        170 GHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER-PDIGVYVKDLSAYIANNADDME  247 (705)
Q Consensus       170 ~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~gv~v~~l~~~~v~s~~e~~  247 (705)
                      +.|... ..+..|.|+|||+|||||+|+|||++......           .+.++++ ..++++|.||+++.|.|++|++
T Consensus       497 ~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~-----------~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~  565 (715)
T 4h1g_A          497 NDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNT-----------KYEIKHDDIAGKTTVTNVSTIDIKSPEQAI  565 (715)
T ss_dssp             HHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTC-----------CCCEEEETTTTEEEETTCCCEECSCHHHHH
T ss_pred             HHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCC-----------cceeEEecCCCCEEEeCCEEEEcCCHHHHH
Confidence            999764 34678999999999999999999987533211           1233554 4556999999999999999999


Q ss_pred             HHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCc
Q psy11229        248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGAS  327 (705)
Q Consensus       248 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~  327 (705)
                      .+|..|.++|++++|.||..|||||+||+|+|++.....                .....|+|+|||||||||..++++.
T Consensus       566 ~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~----------------~~~~~~~l~lvDLAGsEr~~~~~~~  629 (715)
T 4h1g_A          566 TILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT----------------KESSYGTLNLIDLAGSERLNNSRAE  629 (715)
T ss_dssp             HHHHHHHCC----------CGGGSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCC-------
T ss_pred             HHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC----------------CCEeEEEEEEEeCCCcccccccCCh
Confidence            999999999999999999999999999999998765332                3356799999999999999999999


Q ss_pred             cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        328 GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       328 g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      |+|++|+.+||+||++||+||.+|+.++..|||||||||||||||||||||+|+|||||||+..+|+||++||+||+|||
T Consensus       630 g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~  709 (715)
T 4h1g_A          630 GDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVN  709 (715)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998777899999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy11229        408 KIC  410 (705)
Q Consensus       408 ~I~  410 (705)
                      +|+
T Consensus       710 ~i~  712 (715)
T 4h1g_A          710 NTR  712 (715)
T ss_dssp             C--
T ss_pred             cce
Confidence            985

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.97  E-value=9.8e-33  Score=243.00  Aligned_cols=97  Identities=51%  Similarity=0.698  Sum_probs=91.0

Q ss_pred             HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229        335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR  414 (705)
Q Consensus       335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~  414 (705)
                      .+||+||++||+||.+|++++..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||+.|+|+|.
T Consensus         2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~   81 (100)
T 2kin_B            2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS   81 (100)
T ss_dssp             CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence            57999999999999999998778999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcch-HHHHHHHHHH
Q psy11229        415 VNQDPKD-ALLIKYQKEI  431 (705)
Q Consensus       415 ~n~~~~~-~~l~~~~~ei  431 (705)
                      +|+++.. .++++|++||
T Consensus        82 ~n~~~~~~~l~~~~~~e~   99 (100)
T 2kin_B           82 VNLELTAEEWKKKYEKEK   99 (100)
T ss_dssp             CEEECCHHHHHHHHHHHH
T ss_pred             eccCCCHHHHHHHHHHhh
Confidence            9998765 5667788776

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.96  E-value=7.5e-30  Score=232.20  Aligned_cols=95  Identities=52%  Similarity=0.719  Sum_probs=86.3

Q ss_pred             hhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccC
Q psy11229        338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ  417 (705)
Q Consensus       338 N~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~  417 (705)
                      |+||++||+||.+|++++..||||||||||+||+|+|||||+|+||+||||+..+|+||++||+||+||+.|+|+|.+|.
T Consensus         1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~   80 (117)
T 3kin_B            1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL   80 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence            89999999999999998778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchH-HHHHHHHHHH
Q psy11229        418 DPKDA-LLIKYQKEIS  432 (705)
Q Consensus       418 ~~~~~-~l~~~~~ei~  432 (705)
                      ++... ++++|+++++
T Consensus        81 ~~~~~~l~~~~~~e~~   96 (117)
T 3kin_B           81 ELTAEEWKKKYEKEKE   96 (117)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            88754 4444444433

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.6e-25  Score=228.59  Aligned_cols=231  Identities=12%  Similarity=0.143  Sum_probs=157.0

Q ss_pred             eeEeeceeeCCCCChH--HHHHhhhhhHHHHhhC-CCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         97 KTFTFDTVFDANSKQL--DIYNETARPIVDKVLS-GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~--~Vy~~~~~plV~~vl~-G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      ++|.||+||++.++|+  +||++ +.++|+++|+ |||+|||||||||||||                ||++..+|....
T Consensus        57 k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT----------------~ral~q~f~~~~  119 (298)
T 2o0a_A           57 HVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL----------------RESLIKFLAEKD  119 (298)
T ss_dssp             CEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH----------------HHHHHHHHHSTT
T ss_pred             ceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc----------------HHHHHHHHHHhh
Confidence            7899999999999999  99999 5899999999 99999999999999999                999999998765


Q ss_pred             h-cCCCceEEEEEEEEEEE-cCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCC-HHHHHHHH
Q psy11229        174 K-ADESVKFLVRVSYFEIY-NEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANN-ADDMEKIM  250 (705)
Q Consensus       174 ~-~~~~~~~~V~vS~~EIy-nE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s-~~e~~~ll  250 (705)
                      . ..  +.|.+.+||+||| ||.++|||...+..          +  .++|+.+.++.++|.|++.+.|.+ ++|+..++
T Consensus       120 ~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~~----------~--k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~  185 (298)
T 2o0a_A          120 TIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSHN----------D--KDSIKLKFEKHSISLDSKLVIIENGLEDLPLNF  185 (298)
T ss_dssp             SHHH--HHEEEEEEEEEEECC-CEEETTSCCC------------------CEEEECSSCEEEESCCEEESSGGGGSCTTT
T ss_pred             hhcc--cceEEEEEEEEEecCCchHHhcCCCCCC----------C--cceEEecCCCCEEecccEEEEccccHHHHHHHh
Confidence            4 32  8899999999999 99999999743322          1  245677888999999999999999 88887776


Q ss_pred             HhhhccCccccccCCCCCCCceeEEEEEEEeec-CCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229        251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ  329 (705)
Q Consensus       251 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  329 (705)
                      ..+...      ..|+   +.-.|+.+.+.... ...+.             ... ..-.+.|+.+....          
T Consensus       186 ~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~-------------~~~-~~~d~yf~e~~~~~----------  232 (298)
T 2o0a_A          186 SCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGN-------------NDP-VPVDFYFIELNNLK----------  232 (298)
T ss_dssp             TCC----------------CEEEEEEEEEEESCC--------------------C-CCEEEEEEEECSHH----------
T ss_pred             hccccc------ccCC---CCceEEEEEEecCccccccc-------------CCC-CceEEEEEEeCCHH----------
Confidence            332221      1222   23445555554421 11111             000 11246677654211          


Q ss_pred             cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                                +...|.+.+   ..+     -+-.|+++-+|+.-|- .+|.+++.++.-...+    -.-|..+.++.++
T Consensus       233 ----------~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~----~~lL~~s~~i~~~  289 (298)
T 2o0a_A          233 ----------SIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNV----NKLLTISEEVQTQ  289 (298)
T ss_dssp             ----------HHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGH----HHHHHHHHHHHHH
T ss_pred             ----------HHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCch----hHHHHHHHHhhcc
Confidence                      233444433   222     2356788888887664 5688999999765432    2478888888888


Q ss_pred             ccccc
Q psy11229        410 CNKAR  414 (705)
Q Consensus       410 ~n~~~  414 (705)
                      .|.-+
T Consensus       290 ~~~~~  294 (298)
T 2o0a_A          290 LCKRK  294 (298)
T ss_dssp             TC---
T ss_pred             cCccc
Confidence            77544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.78  E-value=0.052  Score=52.59  Aligned_cols=138  Identities=16%  Similarity=0.215  Sum_probs=67.1

Q ss_pred             chhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        471 IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDME  550 (705)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e  550 (705)
                      ++.+++.+|..+......|..+...|...+......+..........+..+..++...+.....|+..|.+.+....+++
T Consensus        43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE  122 (189)
T 2v71_A           43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE  122 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            44566666666666666666666666543322111111111111223445555666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        551 EKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQ  609 (705)
Q Consensus       551 ~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~  609 (705)
                      ........-++.+..++......+.-+..|+.+ .+..+.+...|.+.++.|..|+..+
T Consensus       123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~v~  180 (189)
T 2v71_A          123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEARDLRQELAVR  180 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-----------------
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665555666666666666666666666654 3333444555666666666666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.17  E-value=0.14  Score=58.40  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        528 RKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV  584 (705)
Q Consensus       528 ~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~  584 (705)
                      .+.+.+.+...++..+++.....+.+..+++|.+.++++++...+.+..+++|+.++
T Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~  570 (597)
T 3oja_B          514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK  570 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            333444444455555555555555566666666666665555555555555444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.82  E-value=0.063  Score=65.64  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=18.7

Q ss_pred             CCCCEEEEEeccCCCCcccc
Q psy11229        128 SGFNGTIFAYGQTGTGKTFT  147 (705)
Q Consensus       128 ~G~N~tIfaYGqTgSGKT~T  147 (705)
                      ++.|.||+.-|-+|||||.+
T Consensus       153 ~~~~QsIiisGESGAGKTe~  172 (1080)
T 2dfs_A          153 DERNQSIIVSGESGAGKTVS  172 (1080)
T ss_dssp             HTCCEEEEEECSTTSSHHHH
T ss_pred             cCCCcEEEEcCCCCCCccch
Confidence            59999999999999999976

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.80  E-value=0.69  Score=47.05  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAII  613 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii  613 (705)
                      .|..+++..+.+...+++.+..+.++++.++..+..+...+...+.++.....+......++...+..+..    ...-+
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~----~r~~l  169 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK----KKEDL  169 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            34444444444444444444444444555555555555555555555554444444444444444433332    23333


Q ss_pred             HhcCChHH---HHHHHh
Q psy11229        614 QKFIPTKY---LELMTQ  627 (705)
Q Consensus       614 ~~fiP~~~---~~ki~~  627 (705)
                      -.-||++-   .++|+.
T Consensus       170 ~~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          170 VEKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHTSCHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHH
Confidence            44567753   445543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.65  E-value=2  Score=43.61  Aligned_cols=114  Identities=11%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy11229        529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE---  605 (705)
Q Consensus       529 ~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e---  605 (705)
                      .+..+.++..+...+++...+.+++..++.+++.++..+..+...+...+.++.....+...+...+......+...   
T Consensus        96 ~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~  175 (256)
T 3na7_A           96 NIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP  175 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            33333444444444444444444444444444444444444444444444444444444444444433333333322   


Q ss_pred             --HHHHHHHHH-------------------hcCChHHHHHHHh--hcccccccCceeecc
Q psy11229        606 --YSYQQAIIQ-------------------KFIPTKYLELMTQ--NATWNEDIGEWELKC  642 (705)
Q Consensus       606 --l~l~~~ii~-------------------~fiP~~~~~ki~~--~~~wdee~~~W~l~~  642 (705)
                        |..+..|..                   +-|||..+..|..  ...+.+.=|.+-+..
T Consensus       176 ~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~  235 (256)
T 3na7_A          176 KIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE  235 (256)
T ss_dssp             HHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred             HHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence              344444443                   2356777777765  356777777766654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.13  E-value=0.36  Score=59.01  Aligned_cols=39  Identities=31%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CchHHHHHHHHHhhhhc-CCCceEEEEEEEEEEEcCeeee
Q psy11229        159 GIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEIRD  197 (705)
Q Consensus       159 GIipr~~~~lF~~i~~~-~~~~~~~V~vS~~EIynE~v~D  197 (705)
                      +|.-+.|.+|...|... ........+|..+.||.=++++
T Consensus       406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~  445 (1080)
T 2dfs_A          406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE  445 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence            55556666666666542 1111123567778888765554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.53  E-value=0.15  Score=63.04  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             hCCCCEEEEEeccCCCCccccc
Q psy11229        127 LSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       127 l~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      -.+.|.||+..|-+|||||.+.
T Consensus       165 ~~~~~Q~i~isGeSGaGKTe~~  186 (1184)
T 1i84_S          165 QDREDQSILCTGESGAGKTENT  186 (1184)
T ss_dssp             HHTCCEEEECCCSTTSSTTHHH
T ss_pred             hcCCCcEEEEecCCCCCccHHH
Confidence            3599999999999999999763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.21  E-value=0.012  Score=55.99  Aligned_cols=51  Identities=22%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      .++||.....+..|..+++.+ ..++.++--.....++-||++|||||+.+.
T Consensus         6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~   56 (180)
T 3ec2_A            6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV   56 (180)
T ss_dssp             TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred             hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence            367888776666788888654 566665543334457789999999999873

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.09  E-value=2.1  Score=57.59  Aligned_cols=102  Identities=13%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        521 AAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR  600 (705)
Q Consensus       521 ~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~  600 (705)
                      +++++++.+.+..+.++.|++.+++...++++|+....|.+.++.+++.+..++..+..=+.-+    ..|+..+.+++.
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL----~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL----NSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccccHHHHHH
Confidence            3344444444444444444444555555555555555555555555555555555444333333    335555555555


Q ss_pred             HHHHHH-------HHHHHHHHhc--CChHHHHHHH
Q psy11229        601 QITKEY-------SYQQAIIQKF--IPTKYLELMT  626 (705)
Q Consensus       601 ~~~~el-------~l~~~ii~~f--iP~~~~~ki~  626 (705)
                      .+..++       -|....|-++  .+.++...+.
T Consensus      2095 ~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~ 2129 (3245)
T 3vkg_A         2095 NFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLM 2129 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            555543       3344445444  3345544443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=93.82  E-value=2.5  Score=36.39  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF  595 (705)
Q Consensus       519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~  595 (705)
                      ++...+|...+..+..+.+.|...+.+...+...+..++.+...+...=.+.|..+...+.++.+.+.+...-.-.+
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~   83 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM   83 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777777788889999999999999999999999999988888888888888877766666555444333333

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.46  E-value=0.028  Score=54.43  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC-EEEEEeccCCCCcccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN-GTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N-~tIfaYGqTgSGKT~Tm~  149 (705)
                      .++||.....+..+..++.. +..++...-.+.. ..|+-||++|+||||.+.
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~   72 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA   72 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred             cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence            46788776665567777774 3455555433332 678889999999999863

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=93.33  E-value=6.6  Score=38.50  Aligned_cols=13  Identities=31%  Similarity=0.335  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHh
Q psy11229        427 YQKEISELKKKLE  439 (705)
Q Consensus       427 ~~~ei~~Lk~~l~  439 (705)
                      +++.+..|+..+.
T Consensus         4 ~~~~~~~l~~~~~   16 (284)
T 1c1g_A            4 IKKKMQMLKLDKE   16 (284)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHH
Confidence            4444555555443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.26  E-value=2.3  Score=57.30  Aligned_cols=65  Identities=12%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229        552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR---KEIEGFLDNVRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~---~e~e~~~~~~~~~~~el~l~~~ii~~f  616 (705)
                      ++..++++.+..+.+|++..+++.++.+++..++.+++   .|++.+...+...++.|..-..+|+..
T Consensus      2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444555555544444444333   244445555555555555555555444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.17  E-value=0.29  Score=60.58  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=17.4

Q ss_pred             CchHHHHHHHHHhhhhcCCC--ceEEEEEEEEEEEcCeeee
Q psy11229        159 GIIPNSFAHIFGHIAKADES--VKFLVRVSYFEIYNEEIRD  197 (705)
Q Consensus       159 GIipr~~~~lF~~i~~~~~~--~~~~V~vS~~EIynE~v~D  197 (705)
                      +|.-+.|.+|...|...-..  .....+|..+.||.=++++
T Consensus       432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~  472 (1184)
T 1i84_S          432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE  472 (1184)
T ss_dssp             HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence            44445555555555432111  1123456666666544443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.78  E-value=0.039  Score=57.85  Aligned_cols=52  Identities=15%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .++||.+...+..+..++. .+..++...-.+....|+-||++|+||||.+.+
T Consensus       120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a  171 (308)
T 2qgz_A          120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA  171 (308)
T ss_dssp             SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred             hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence            3678776554445566766 345666655444456788899999999998743

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.28  E-value=5.2  Score=34.65  Aligned_cols=82  Identities=9%  Similarity=0.113  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT  603 (705)
Q Consensus       524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~  603 (705)
                      +.+....+.+.++..+...+......++.+.+|+..+..+...+.+....|..++..+.    +...........+..|+
T Consensus        17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe----e~ek~~~~aE~ev~~L~   92 (101)
T 3u1c_A           17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL----FAEENAAKAESEVASLN   92 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            34444444445555555555555555555555555555555555554444444433332    22334455566666777


Q ss_pred             HHHHHH
Q psy11229        604 KEYSYQ  609 (705)
Q Consensus       604 ~el~l~  609 (705)
                      |.++|.
T Consensus        93 Rriqll   98 (101)
T 3u1c_A           93 RRIQLV   98 (101)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776664

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.16  E-value=1.2  Score=41.07  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR  586 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~  586 (705)
                      .++-+.+...+.|++.+++.+.+...+-..+.+++.+.+..++++.++..++..++.++..++.
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555666666666666666666666666666666666666666666666666655543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.42  E-value=2  Score=39.46  Aligned_cols=65  Identities=14%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        511 AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL  575 (705)
Q Consensus       511 ~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~  575 (705)
                      ....+...+.+++++++..+....|+.++.....+...+.+.+..|++++..+++++.++..++.
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555556666666666666666666666666666666666666666666666554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.21  E-value=6.8  Score=33.84  Aligned_cols=21  Identities=10%  Similarity=0.112  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQITKEYSYQ  609 (705)
Q Consensus       589 ~~e~e~~~~~~~~~~~el~l~  609 (705)
                      ..........+..|+|.++|.
T Consensus        78 ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           78 EKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666677766654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=90.97  E-value=8.8  Score=34.67  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA  576 (705)
Q Consensus       534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~  576 (705)
                      .|..+|+.-.....+.++.+..|......+..+|+.+...+..
T Consensus        52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee   94 (129)
T 2fxo_A           52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED   94 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444434444445555555555444444444444444433

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=90.49  E-value=6.2  Score=34.60  Aligned_cols=24  Identities=8%  Similarity=0.174  Sum_probs=11.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH
Q psy11229        477 AELKRAQSDHQSMVEKLELLQKKV  500 (705)
Q Consensus       477 ~~~~~~~~~~~~l~~k~~~l~~~~  500 (705)
                      +++...+.....+....+.|+.++
T Consensus        15 KqL~~~~q~~~e~e~~k~eL~~~~   38 (107)
T 2no2_A           15 KQVSMARQAQVDLEREKKELEDSL   38 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444445554443

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=90.39  E-value=3.6  Score=36.73  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229        585 QRENRKEIEGFLDNVRQITKEYSYQQAIIQKF  616 (705)
Q Consensus       585 ~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~f  616 (705)
                      ..++..-...+.....+|.++++-+..|||+|
T Consensus        70 k~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF  101 (119)
T 3etw_A           70 KSQYQELASKYEDALKKLEAEMEQQKAVISDF  101 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666667777777888888888899888

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.54  E-value=14  Score=34.84  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN  588 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~  588 (705)
                      +++.......++-+.......+...+++.++.+|++|++.+...+.++......+.+.+.++..+.
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~  134 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK  134 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334444455566667777777776666666666666666666665554443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.37  E-value=9.9  Score=32.85  Aligned_cols=28  Identities=14%  Similarity=0.212  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        530 QKEEELKKNIQEKDAERIDMEEKYSSLQ  557 (705)
Q Consensus       530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~  557 (705)
                      .....|...++..+.+....++.+...+
T Consensus        44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~   71 (101)
T 3u1c_A           44 DDIVQLEKQLRVTEDSRDQVLEELHKSE   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444333444333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=88.86  E-value=9.1  Score=35.44  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        510 KAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA  577 (705)
Q Consensus       510 ~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~  577 (705)
                      ....+.+.+..++.++...+.+...++..++++......+...+..|+-+...++.+++++..+...+
T Consensus        62 ~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           62 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455666666666666666666666666665555555566665555555555555554444333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.35  E-value=12  Score=32.34  Aligned_cols=19  Identities=21%  Similarity=0.309  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy11229        535 LKKNIQEKDAERIDMEEKY  553 (705)
Q Consensus       535 l~~~l~~~~~e~~~~e~~~  553 (705)
                      |+..++..+.+....++.+
T Consensus        49 L~kKiq~lE~eld~~~e~l   67 (101)
T 3u59_A           49 LQKKLKGTEDEVEKYSESV   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=88.19  E-value=0.21  Score=51.62  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             eceeeCCCCChHHHHHhhhhhHHHHhhC--CCC--EEEEEeccCCCCccccc
Q psy11229        101 FDTVFDANSKQLDIYNETARPIVDKVLS--GFN--GTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~--G~N--~tIfaYGqTgSGKT~Tm  148 (705)
                      ||..|+..---..+.+.++..++...+.  |..  ..|+-||++|+|||+..
T Consensus         2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A            2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred             cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            3333433333345666666667766554  222  35778999999999865

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.12  E-value=19  Score=34.63  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q psy11229        531 KEEELKKNIQEKDAE  545 (705)
Q Consensus       531 ~~~~l~~~l~~~~~e  545 (705)
                      +...|+..+.....+
T Consensus        57 ~~~~L~~~~~~L~~E   71 (189)
T 2v71_A           57 RNRDLQADNQRLKYE   71 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=87.21  E-value=0.23  Score=49.73  Aligned_cols=51  Identities=18%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             eEeeceeeCCCCChHHHHHhhh----hhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETA----RPIVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~----~plV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .++||.+.+.+.....+-+.+.    .+.+..+---....|+-||++|||||+.+
T Consensus        12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~   66 (254)
T 1ixz_A           12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   66 (254)
T ss_dssp             SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence            4788988876544434332221    11222221111223899999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=86.84  E-value=0.3  Score=45.45  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             hhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229        120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ..++..+..+....|+-||++|+|||+.+.
T Consensus        32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~   61 (195)
T 1jbk_A           32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE   61 (195)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence            344445555666778999999999999873

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=86.68  E-value=0.2  Score=50.59  Aligned_cols=45  Identities=18%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .|+||.+.+.+..-..+.+.     +..+.. .+..|+-||.+|+|||+..
T Consensus         2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred             CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence            37899888654433333322     222222 2356788999999999875

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=86.57  E-value=3.7  Score=38.16  Aligned_cols=14  Identities=14%  Similarity=0.169  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHH
Q psy11229        591 EIEGFLDNVRQITK  604 (705)
Q Consensus       591 e~e~~~~~~~~~~~  604 (705)
                      ..+.+.++|+.|+.
T Consensus       130 rE~~yee~I~~L~~  143 (147)
T 2b9c_A          130 KNYHLENEVARLKK  143 (147)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455555555443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=86.48  E-value=0.23  Score=52.32  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229        122 IVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      |-..+-.|...+|+-||++|||||.++
T Consensus        36 L~~~i~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           36 IYDSLMSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            333444678889999999999999876

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.10  E-value=22  Score=33.12  Aligned_cols=45  Identities=29%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL  567 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l  567 (705)
                      .++.........|...+.+-...+...|.....+..|++.|+.-|
T Consensus        51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL   95 (154)
T 2ocy_A           51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   95 (154)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566777777767777778888888888888888765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=85.92  E-value=0.2  Score=52.49  Aligned_cols=45  Identities=20%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ...|+|+.+++.+    .+...    +...++.+..+.|+-||++|+|||+..
T Consensus        18 ~~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           18 RPVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             CCCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred             CCCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence            3458899988743    33322    222333333445899999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=85.84  E-value=0.29  Score=49.33  Aligned_cols=50  Identities=14%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHH-----HHhhCCCCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIV-----DKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV-----~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .++|+.+.+.+...+.+.+.+ ..+-     ..+-......|+-||++|||||+.+
T Consensus         7 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            7 NVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            467899998887766665533 2211     1111122334889999999999976

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.81  E-value=12  Score=30.79  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        545 ERIDMEEKYSSLQEESEGLSKKLK  568 (705)
Q Consensus       545 e~~~~e~~~~~l~~e~~~~~~~l~  568 (705)
                      +...+..++..++++++....+|.
T Consensus        42 ev~~L~kKiq~lE~eld~~ee~l~   65 (81)
T 1ic2_A           42 ELVALQKKLKGTEDELDKYSESLK   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.73  E-value=1.9  Score=47.40  Aligned_cols=78  Identities=19%  Similarity=0.344  Sum_probs=53.4

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG  159 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G  159 (705)
                      .+||.|-+-+.--+++.+.+..|+.. .++.  |.  .-.|+-||++|||||++.              .|+.-.....|
T Consensus       178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G  257 (437)
T 4b4t_L          178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG  257 (437)
T ss_dssp             SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred             CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence            57899888777667777777777763 3443  32  346888999999999764              22222222347


Q ss_pred             chHHHHHHHHHhhhhcC
Q psy11229        160 IIPNSFAHIFGHIAKAD  176 (705)
Q Consensus       160 Iipr~~~~lF~~i~~~~  176 (705)
                      --.+.+..+|.......
T Consensus       258 ese~~ir~~F~~A~~~~  274 (437)
T 4b4t_L          258 ESARIIREMFAYAKEHE  274 (437)
T ss_dssp             HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            77888999998876643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=85.58  E-value=0.34  Score=45.08  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             hhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229        120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ..++..+..+....|+-||++|+|||+.+.
T Consensus        32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~   61 (187)
T 2p65_A           32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE   61 (187)
T ss_dssp             HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred             HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence            344445555667778999999999998763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=85.39  E-value=0.29  Score=50.67  Aligned_cols=50  Identities=16%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-Hhh----CCCCEEEEEeccCCCCccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVL----SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl----~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ++||.|.+.+..-+.+.+.+..|+.. ..+    -.....|+-||++|||||+.+
T Consensus        12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A           12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence            67888887766666666665555321 111    123456888999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=85.37  E-value=0.3  Score=49.62  Aligned_cols=51  Identities=24%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHH-----HhhCCCCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVD-----KVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-----~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .++|+.+.+.+..-+.+.+.+..|+..     ..--.....|+-||++|+|||+.+
T Consensus        13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la   68 (285)
T 3h4m_A           13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA   68 (285)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence            478999888766555565555443322     111123445888999999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.11  E-value=13  Score=40.94  Aligned_cols=11  Identities=36%  Similarity=0.537  Sum_probs=6.7

Q ss_pred             eEEEEecCCCc
Q psy11229        309 RLHLVDLAGSE  319 (705)
Q Consensus       309 kL~lVDLAGSE  319 (705)
                      .|..+||.|..
T Consensus       238 ~L~~L~l~~N~  248 (487)
T 3oja_A          238 NLEHFDLRGNG  248 (487)
T ss_dssp             TCCEEECTTCC
T ss_pred             CCCEEEcCCCC
Confidence            45666776643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=85.03  E-value=0.42  Score=49.72  Aligned_cols=49  Identities=24%  Similarity=0.468  Sum_probs=29.5

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      .|+||..+... .+...+.. +..++..--. ....++-||++|+|||+.+.
T Consensus         7 ~~~f~~fv~g~-~~~~a~~~-~~~~~~~~~~-~~~~lll~G~~GtGKT~la~   55 (324)
T 1l8q_A            7 KYTLENFIVGE-GNRLAYEV-VKEALENLGS-LYNPIFIYGSVGTGKTHLLQ   55 (324)
T ss_dssp             TCCSSSCCCCT-TTHHHHHH-HHHHHHTTTT-SCSSEEEECSSSSSHHHHHH
T ss_pred             CCCcccCCCCC-cHHHHHHH-HHHHHhCcCC-CCCeEEEECCCCCcHHHHHH
Confidence            37888876332 33444543 3444443211 23357889999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.98  E-value=0.77  Score=50.39  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCcccccc--------------ccCCCCCCCC
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTME--------------GVNNVPELKG  159 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~~~~~~~~G  159 (705)
                      -+||.|-+-+.--+++.+.+..|+.. ..+.  |.  --.|+-||++|||||++..              |..-.....|
T Consensus       178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG  257 (434)
T 4b4t_M          178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG  257 (434)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred             CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence            57899988887777888888888763 3333  32  3468889999999997642              2221122347


Q ss_pred             chHHHHHHHHHhhhhcC
Q psy11229        160 IIPNSFAHIFGHIAKAD  176 (705)
Q Consensus       160 Iipr~~~~lF~~i~~~~  176 (705)
                      --.+.+..+|.......
T Consensus       258 ese~~ir~lF~~A~~~a  274 (434)
T 4b4t_M          258 EGAKLVRDAFALAKEKA  274 (434)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            77889999998776654

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=84.97  E-value=25  Score=32.80  Aligned_cols=104  Identities=19%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS  554 (705)
Q Consensus       475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~  554 (705)
                      .+.+|.++.........++..|+..+...+.+ +...+.....   +.+.-+....++..|...+++.+......+....
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~n-lKsLE~seek---asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~  101 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNN-LKSLEAQAEK---YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT  101 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555556666666666655443322 1212211111   1111222233333444555554444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        555 SLQEESEGLSKKLKKVSSMLLAAKEERK  582 (705)
Q Consensus       555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~~  582 (705)
                      .|+.+++.+..+|..-..++..+..++.
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd  129 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMK  129 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.89  E-value=12  Score=41.13  Aligned_cols=11  Identities=9%  Similarity=-0.142  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHH
Q psy11229        425 IKYQKEISELK  435 (705)
Q Consensus       425 ~~~~~ei~~Lk  435 (705)
                      .+++.|++.|.
T Consensus       324 ~eF~~Eve~L~  334 (487)
T 3oja_A          324 ETERLECEREN  334 (487)
T ss_dssp             -CHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            34556655544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=84.79  E-value=0.37  Score=47.02  Aligned_cols=46  Identities=15%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      ++||.+++. ..+..++..+ ..++   ..+....|+-||++|+|||+.+.
T Consensus        25 ~~~~~~~~~-~~~~~~~~~l-~~~~---~~~~~~~~ll~G~~G~GKT~la~   70 (242)
T 3bos_A           25 ETFTSYYPA-AGNDELIGAL-KSAA---SGDGVQAIYLWGPVKSGRTHLIH   70 (242)
T ss_dssp             CSTTTSCC---CCHHHHHHH-HHHH---HTCSCSEEEEECSTTSSHHHHHH
T ss_pred             CChhhccCC-CCCHHHHHHH-HHHH---hCCCCCeEEEECCCCCCHHHHHH
Confidence            566766652 2334555432 2222   22345678889999999999763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.72  E-value=1.9  Score=47.28  Aligned_cols=78  Identities=23%  Similarity=0.392  Sum_probs=53.4

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG  159 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G  159 (705)
                      -+||.|-+-+.--+++.+.+..|+.. ..+.  |.  .-.|+-||++|||||++.              .|..-.....|
T Consensus       169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G  248 (428)
T 4b4t_K          169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG  248 (428)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred             CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence            57888888777666777777777653 3333  32  335899999999999764              22222222347


Q ss_pred             chHHHHHHHHHhhhhcC
Q psy11229        160 IIPNSFAHIFGHIAKAD  176 (705)
Q Consensus       160 Iipr~~~~lF~~i~~~~  176 (705)
                      --++.+..+|.......
T Consensus       249 e~e~~ir~lF~~A~~~a  265 (428)
T 4b4t_K          249 EGPRMVRDVFRLARENA  265 (428)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHcC
Confidence            88899999998876543

>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=84.58  E-value=6.7  Score=40.77  Aligned_cols=88  Identities=14%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             CeeEeeceeeCCCC-ChHHHHHhhhhhHHHHhh-CCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229         96 PKTFTFDTVFDANS-KQLDIYNETARPIVDKVL-SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA  173 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~-tQ~~Vy~~~~~plV~~vl-~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~  173 (705)
                      .+.|.|++|++... +-.+++..-++..++-++ .+.|+.||..|..-            .    +   .....++..+.
T Consensus        91 ~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w----~---~Lr~~lL~fi~  151 (333)
T 4etp_B           91 EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------H----G---SLRESLIKFLA  151 (333)
T ss_dssp             CCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------C----C---HHHHHHHHHHH
T ss_pred             cceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------c----H---HHHHHHHHHHH
Confidence            57899999998775 334455455689999999 89999999988541            1    1   22333444443


Q ss_pred             hcCC--CceEEEEEEEEEEEcCe-eeeccCCC
Q psy11229        174 KADE--SVKFLVRVSYFEIYNEE-IRDLLSKN  202 (705)
Q Consensus       174 ~~~~--~~~~~V~vS~~EIynE~-v~DLL~~~  202 (705)
                      ..+.  .+.|.+.+-|+.+-++. ..|||.+.
T Consensus       152 ~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~  183 (333)
T 4etp_B          152 EKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY  183 (333)
T ss_dssp             STTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred             hcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence            3210  25788999998887776 69999875

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.38  E-value=20  Score=32.25  Aligned_cols=88  Identities=13%  Similarity=0.214  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD  597 (705)
Q Consensus       522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~  597 (705)
                      +.++.+.+.....|..+++........++..+..++.    ++...+.+|..+...+..++.++.....    +-++|++
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~----EYq~Ll~  112 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ----EYKILLD  112 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            3344444444444444444443333334443333322    2233334444444445555544444333    3334554


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11229        598 NVRQITKEYSYQQAII  613 (705)
Q Consensus       598 ~~~~~~~el~l~~~ii  613 (705)
                      ---.|..|+.-+.-++
T Consensus       113 vKl~Ld~EIatYRkLL  128 (131)
T 3tnu_A          113 VKTRLEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhH
Confidence            4456666665554443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=83.62  E-value=0.54  Score=43.54  Aligned_cols=17  Identities=29%  Similarity=0.802  Sum_probs=14.5

Q ss_pred             EEEEeccCCCCcccccc
Q psy11229        133 TIFAYGQTGTGKTFTME  149 (705)
Q Consensus       133 tIfaYGqTgSGKT~Tm~  149 (705)
                      .++-||++|||||+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~   54 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQ   54 (149)
T ss_dssp             EEEEESSSTTTTCHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            56679999999999874

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=83.27  E-value=23  Score=31.13  Aligned_cols=47  Identities=15%  Similarity=0.094  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN  598 (705)
Q Consensus       552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~  598 (705)
                      +++.|.+.++.-+..|..+...+.+++.++.+...+....++..-..
T Consensus        46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e   92 (112)
T 1x79_B           46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE   92 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444443333333333333333

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=83.08  E-value=0.66  Score=46.90  Aligned_cols=21  Identities=19%  Similarity=0.096  Sum_probs=18.4

Q ss_pred             CCCCEEEEEeccCCCCccccc
Q psy11229        128 SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       128 ~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ......|+-||++|+|||+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHH
Confidence            566778999999999999876

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.00  E-value=18  Score=29.90  Aligned_cols=52  Identities=23%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM  573 (705)
Q Consensus       522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~  573 (705)
                      +.++++.+.+...|.++.++....+..+......|++|....+.+|..+..+
T Consensus        26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555555556666666655566666666666666666666666655544

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.77  E-value=26  Score=31.39  Aligned_cols=86  Identities=13%  Similarity=0.244  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN  598 (705)
Q Consensus       523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~  598 (705)
                      .++.+.+.....|..+++........++..+...+.    ++.....+|..+...+..++.++.....    +-++|++-
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~----EYq~Llnv  111 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLR----EYQELMNT  111 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHH
Confidence            334444444444444444433333333333333222    2333344444455555555555544333    33344444


Q ss_pred             HHHHHHHHHHHHHH
Q psy11229        599 VRQITKEYSYQQAI  612 (705)
Q Consensus       599 ~~~~~~el~l~~~i  612 (705)
                      --.|..|+.-+.-+
T Consensus       112 Kl~Ld~EIatYRkL  125 (129)
T 3tnu_B          112 KLALDVEIATYRKL  125 (129)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            44566665544433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=82.60  E-value=27  Score=31.38  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD  583 (705)
Q Consensus       546 ~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d  583 (705)
                      +..+++++....+....+...-+++...+..++..+.|
T Consensus        85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led  122 (129)
T 2fxo_A           85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD  122 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444433

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.41  E-value=5.8  Score=43.37  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG  159 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G  159 (705)
                      -+||.|=+-+.--+++.+.+..|+.. ..+.  |  .--.|+-||+.|||||.+.              .|..-.....|
T Consensus       179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG  258 (437)
T 4b4t_I          179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG  258 (437)
T ss_dssp             CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred             CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence            57888888777667777777777653 3333  3  2356899999999999764              22222222347


Q ss_pred             chHHHHHHHHHhhhhcC
Q psy11229        160 IIPNSFAHIFGHIAKAD  176 (705)
Q Consensus       160 Iipr~~~~lF~~i~~~~  176 (705)
                      --.+.+..+|.......
T Consensus       259 esek~ir~lF~~Ar~~a  275 (437)
T 4b4t_I          259 DGPRLCRQIFKVAGENA  275 (437)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            78899999998876654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=82.23  E-value=0.42  Score=48.91  Aligned_cols=51  Identities=16%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCC---CCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSG---FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G---~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ..+|+.+.+.+..-+.+.+.+..|+.. .++.|   ....|+-||++|||||+.+
T Consensus        17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la   71 (297)
T 3b9p_A           17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA   71 (297)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred             CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence            367888888665555565555555442 22222   3457889999999999876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=81.59  E-value=0.39  Score=51.12  Aligned_cols=51  Identities=22%  Similarity=0.341  Sum_probs=33.1

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHh----hCCCCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKV----LSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~v----l~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ..+||.+.+.+..-+.+.+.+..|+...-    +.+....|+-||++|+|||+.+
T Consensus        80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A           80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence            35788888765555555555544443211    2244567899999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=81.38  E-value=0.32  Score=49.57  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             eeEeeceeeCCCCChHHHHHhhh----hhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETA----RPIVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~----~plV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ..++||.+.+.+.....+.+.+.    .+.+..+---....|+-||++|||||+.+
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~   90 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   90 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence            34788888876554444332221    11122211111223889999999999986

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=81.32  E-value=0.48  Score=49.68  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhCCC---CEEEEEeccCCCCccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLSGF---NGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~---N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+||.|.+.+..-+.+.+.+..|+-. .++.|.   ...|+-||++|+|||+..
T Consensus         9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la   62 (322)
T 1xwi_A            9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA   62 (322)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence            46888887766555666666556542 344442   246888999999999876

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.12  E-value=22  Score=29.30  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK  569 (705)
Q Consensus       524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~  569 (705)
                      +.+....+.+.+...+...+......++.+.+|+..+..++..+.+
T Consensus        14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~   59 (81)
T 1ic2_A           14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK   59 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444433333444443333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.83  E-value=7.7  Score=35.02  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES  560 (705)
Q Consensus       525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~  560 (705)
                      +...+....+++..++..+.+...+.....+|+..+
T Consensus        31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l   66 (129)
T 3tnu_B           31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI   66 (129)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            333444445555555555544444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.82  E-value=28  Score=30.38  Aligned_cols=18  Identities=17%  Similarity=0.386  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQITKEY  606 (705)
Q Consensus       589 ~~e~e~~~~~~~~~~~el  606 (705)
                      ..++++|.+.++.|.+++
T Consensus        89 ~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           89 VEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHH
Confidence            345666777776666654

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.58  E-value=6.4  Score=35.68  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229        525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES  560 (705)
Q Consensus       525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~  560 (705)
                      +...+....+++..++..+.++..+.....+|+..+
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l   68 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSL   68 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            333344444455555444444444444444443333

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=80.36  E-value=0.35  Score=48.26  Aligned_cols=19  Identities=26%  Similarity=0.385  Sum_probs=16.0

Q ss_pred             CCEEEEEeccCCCCccccc
Q psy11229        130 FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       130 ~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ....|+-||++|+|||+..
T Consensus        38 ~~~~vll~G~~GtGKT~la   56 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLA   56 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            3456899999999999976

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=80.20  E-value=0.52  Score=49.62  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             ChHHHHHhhhhhHHHHhh-CCCCEEEEEeccCCCCccccc
Q psy11229        110 KQLDIYNETARPIVDKVL-SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       110 tQ~~Vy~~~~~plV~~vl-~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .++...+.+. ..+..++ .+...+++-||++|+|||+++
T Consensus        23 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           23 HREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             TCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            3444444432 2233333 345567899999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	705
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	4e-97
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	3e-93
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-91
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	1e-84
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	4e-83
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	4e-82
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-81
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	6e-79
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-71

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  301 bits (772), Expect = 4e-97
 Identities = 167/423 (39%), Positives = 229/423 (54%), Gaps = 74/423 (17%)

Query: 16  ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
            +++V  R RP ++ E ++G   I T                    P T T D+      
Sbjct: 5   NSIKVVARFRPQNRVEIESGGQPIVTFQ-----------------GPDTCTVDS------ 41

Query: 76  VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
                             E   +FTFD VFD + KQ DI++ + +P VD +L+G+NGT+F
Sbjct: 42  -----------------KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVF 84

Query: 136 AYGQTGTGKTFTM-EGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           AYGQTG GK++TM     + P+ +G+IP     IF  I  +  ++++ VRVSY EIY E 
Sbjct: 85  AYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMER 144

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           IRDLL+                   L V E  + GVYVK L     ++  ++ ++M  G 
Sbjct: 145 IRDLLAPQN--------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGG 190

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
             R+V AT MN+ SSRSH+IF I I                       GS + G+L LVD
Sbjct: 191 NARAVAATNMNQESSRSHSIFVITITQ----------------KNVETGSAKSGQLFLVD 234

Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
           LAGSE+  KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKLTRILQ+SL
Sbjct: 235 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESL 294

Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISEL 434
           GGNS+T +     P+SYN  ET+STLR+  R K I NKA+VN +   A L   ++ +++ 
Sbjct: 295 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL---KQMLAKA 351

Query: 435 KKK 437
           K +
Sbjct: 352 KTQ 354

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  290 bits (743), Expect = 3e-93
 Identities = 153/402 (38%), Positives = 208/402 (51%), Gaps = 79/402 (19%)

Query: 8   EVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTF 67
           ++AE     N++V  R RPL++ E + G   IA     + ++                  
Sbjct: 1   DLAEC----NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----------------- 39

Query: 68  DTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVL 127
                                        K + FD VF +++ Q  +YN+ A+ IV  VL
Sbjct: 40  ---------------------------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 72

Query: 128 SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSY 187
            G+NGTIFAYGQT +GKT TMEG  + PE  GIIP     IF +I   DE+++F ++VSY
Sbjct: 73  EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSY 132

Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
           FEIY ++IRDLL              D+    L V E  +   YVK  +     + D++ 
Sbjct: 133 FEIYLDKIRDLL--------------DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 178

Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
             +  G  NR V  T MNE SSRSH+IF I ++  +    ++ +                
Sbjct: 179 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLS---------------- 222

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 367
           G+L+LVDLAGSE+ +KTGA G  L EA  IN SLS LGNVISAL +G  T++PYR+SK+T
Sbjct: 223 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 281

Query: 368 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           RILQDSLGGN +T +     P+SYN  ET STL +  R K I
Sbjct: 282 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  286 bits (731), Expect = 3e-91
 Identities = 156/404 (38%), Positives = 211/404 (52%), Gaps = 67/404 (16%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N++V VR RP +  E  A    I                                     
Sbjct: 1   NIQVVVRCRPFNLAERKASAHSI----------------------------------VEC 26

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           D +   ++V+    +     KT+TFD VF A++KQ+D+Y     PI+D+V+ G+N TIFA
Sbjct: 27  DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 86

Query: 137 YGQTGTGKTFTM--------EGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
           YGQTGTGKTFTM        E       L GIIP +   IF  +   D   +F V+VS  
Sbjct: 87  YGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLL 144

Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
           EIYNEE+ DLL+ + D    ++   D          R   GV +K L     +N D++ +
Sbjct: 145 EIYNEELFDLLNPSSDVSERLQMFDD---------PRNKRGVIIKGLEEITVHNKDEVYQ 195

Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
           I+  G   R+  AT MN  SSRSH++FS+ I                    + +  V++G
Sbjct: 196 ILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM-------------KETTIDGEELVKIG 242

Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 368
           +L+LVDLAGSE   ++GA  +R +EA  IN SL TLG VI+ALV+ +  H+PYR SKLTR
Sbjct: 243 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTR 301

Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412
           ILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK
Sbjct: 302 ILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  269 bits (687), Expect = 1e-84
 Identities = 143/411 (34%), Positives = 200/411 (48%), Gaps = 83/411 (20%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           +V+V VRVRP + +E       I  +       T+ NP                      
Sbjct: 2   SVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNP---------------------- 37

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSK--------QLDIYNETARPIVDKVLS 128
                            E PK+F+FD  + +++         Q  +Y +    ++     
Sbjct: 38  -------------KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE 84

Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFG-HIAKADESVKFLVRVSY 187
           G+N  IFAYGQTG GK++TM G     + +GIIP     +F       ++++ + V VSY
Sbjct: 85  GYNVCIFAYGQTGAGKSYTMMGKQEKDQ-QGIIPQLCEDLFSRINDTTNDNMSYSVEVSY 143

Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
            EIY E +RDLL+                   L V+E P +G YV+DLS     + +D++
Sbjct: 144 MEIYCERVRDLLNPKNKG-------------NLRVREHPLLGPYVEDLSKLAVTSYNDIQ 190

Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
            +M  GNK R+V AT MNE SSRSHA+F+II                         + ++
Sbjct: 191 DLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR------------HDAETNITTEKV 238

Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-----------KC 356
            ++ LVDLAGSER   TGA G RLKE + IN SL+TLG VISAL +            K 
Sbjct: 239 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 298

Query: 357 THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
             IPYR+S LT +L+++LGGNS+T M A + PA  NY+ET+STLRYA R K
Sbjct: 299 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  264 bits (675), Expect = 4e-83
 Identities = 112/394 (28%), Positives = 170/394 (43%), Gaps = 70/394 (17%)

Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           ++V VR RPLS+ E      DI TV   N  + +  P                       
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVD------------------ 42

Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP-IVDKVLSGFNGTIFA 136
                        + +     F  D VFD       +Y  T +P I+D   +G   + FA
Sbjct: 43  ------------MTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90

Query: 137 YGQTGTGKTFTME--GVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
           YGQTG+GKT+TM         +  GI   +   IF  +   D+     + +S++EIY  +
Sbjct: 91  YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150

Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
           + DLL K                  +   E     V VKDL        +++   M  G 
Sbjct: 151 LYDLLQKR---------------KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGV 195

Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
             R +G  + N+ SSRSHAI +I ++  +                    +  +G++  +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLKDINK-------------------NTSLGKIAFID 236

Query: 315 LAGSERQAKTGASGQ-RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
           LAGSER A T +  +    + + IN SL  L   I A+   K  HIP+R+S+LT++L+D 
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDI 295

Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
             G SK++M A + P     E+T++TLRY+SRVK
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  262 bits (671), Expect = 4e-82
 Identities = 129/415 (31%), Positives = 185/415 (44%), Gaps = 75/415 (18%)

Query: 1   MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHE 60
           M    L+     EE   + V VR RPL+K+E     +D+ +V     ++ V  P      
Sbjct: 16  MECSPLTVTDPIEE-HRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKV-- 71

Query: 61  PPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETAR 120
                                         + +   + F FD  FD  +    +Y  TAR
Sbjct: 72  ----------------------------DLTKYLENQAFCFDFAFDETASNEVVYRFTAR 103

Query: 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM---EGVNNVPELKGIIPNSFAHIFGHIAKADE 177
           P+V  +  G   T FAYGQTG+GKT TM       +    KGI   +   +F    +   
Sbjct: 104 PLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRY 163

Query: 178 -SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLS 236
            ++   V V++FEIYN ++ DLL+K                  L V E     V V  L 
Sbjct: 164 RNLNLEVYVTFFEIYNGKVFDLLNKKA---------------KLRVLEDSRQQVQVVGLQ 208

Query: 237 AYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWR 296
            Y+   ADD+ K++++G+  R+ G T  N  SSRSHA F I++                 
Sbjct: 209 EYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR---------------- 252

Query: 297 LWAEAQGSVQMGRLHLVDLAGSERQAKTGASG-QRLKEASKINLSLSTLGNVISALVDGK 355
                      G+  LVDLAG+ER A T ++  Q   E ++IN SL  L   I AL   K
Sbjct: 253 -----TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 307

Query: 356 CTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
             H P+R SKLT++L+DS +G NS+T M A + P   + E T++TLRYA RVK++
Sbjct: 308 -AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  260 bits (665), Expect = 2e-81
 Identities = 131/396 (33%), Positives = 190/396 (47%), Gaps = 61/396 (15%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RV+ R+RP  K   ++             +I V                         
Sbjct: 2   NIRVYCRIRPALKNLENSD----------TSLINVN----------------------EF 29

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
           D  +G+ +++            F FD +FD     +D++ E    +V   L G+N  IFA
Sbjct: 30  DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFA 88

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKTFTM          GIIP++ +HIF  I K   +   + V   + EIYNE I
Sbjct: 89  YGQTGSGKTFTML-----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENI 143

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLL  + +      E   IG+      ++      + ++++    + + +E I+   NK
Sbjct: 144 VDLLRSDNNNK----EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANK 199

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
            RS  +TA NE SS SH+IF I +  S+                   G+   G L+LVDL
Sbjct: 200 LRSTASTASNEHSSASHSIFIIHLSGSN----------------AKTGAHSYGTLNLVDL 243

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQDS 373
           AGSER   +   G RL+E   IN SLS LG+VI AL   D    HIP+RNSKLT +LQ S
Sbjct: 244 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 303

Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
           L G+SKT+M   + P+S +  ET+++LR+AS+V   
Sbjct: 304 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 339

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  254 bits (649), Expect = 6e-79
 Identities = 133/423 (31%), Positives = 207/423 (48%), Gaps = 73/423 (17%)

Query: 18  VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
           +RV+ R+RPL +KE  A   +                          FT + +       
Sbjct: 2   IRVYCRLRPLCEKEIIAKERNAIRS-------------------VDEFTVEHLWK----- 37

Query: 78  LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
                           +  K   +D VFD N+ Q D++ +T + +V   + G+N  IFAY
Sbjct: 38  ---------------DDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAY 81

Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRD 197
           GQTG+GKTFT+ G ++ P    + P + + +F  + K      F ++    E+Y + + D
Sbjct: 82  GQTGSGKTFTIYGADSNPG---LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVD 138

Query: 198 LLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
           LL   + + L++  + D               V V++++    +  ++++ I+  G++ R
Sbjct: 139 LLLPKQAKRLKLDIKKD-----------SKGMVSVENVTVVSISTYEELKTIIQRGSEQR 187

Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317
               T MNE SSRSH I S+IIE+                      ++  G+L  VDLAG
Sbjct: 188 HTTGTLMNEQSSRSHLIVSVIIES----------------TNLQTQAIARGKLSFVDLAG 231

Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGN 377
           SER  K+G++G +LKEA  IN SLS LG+VISAL      HIPYRN KLT ++ DSLGGN
Sbjct: 232 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQHIPYRNHKLTMLMSDSLGGN 290

Query: 378 SKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKK 437
           +KT+M   + PA  N +ET ++L YASRV+ I N    N   K+  + + +K +S  K++
Sbjct: 291 AKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWKEQ 348

Query: 438 LEE 440
              
Sbjct: 349 AGR 351

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  235 bits (600), Expect = 1e-71
 Identities = 114/392 (29%), Positives = 183/392 (46%), Gaps = 72/392 (18%)

Query: 17  NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
           N+RVF R+RP  + E +         D     + +++                       
Sbjct: 46  NIRVFCRIRPPLESEENRMCCTWTYHD--ESTVELQSI---------------------- 81

Query: 77  DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
                     +    +    + F+FD VF   S Q DI+   + P++   L G+N  IFA
Sbjct: 82  ----------DAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFA 130

Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNEEI 195
           YGQTG+GKT+TM+GV       G+IP +   +F  I        ++ ++ ++ EIYNE +
Sbjct: 131 YGQTGSGKTYTMDGVPESV---GVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 187

Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
            DLLS N+ + +E++   +                YV +++     + + +  +M     
Sbjct: 188 YDLLS-NEQKDMEIRMAKNNKNDI-----------YVSNITEETVLDPNHLRHLMHTAKM 235

Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
           NR+  +TA NE SSRSHA+  + +                      +  + +G ++LVDL
Sbjct: 236 NRATASTAGNERSSRSHAVTKLELIGRHA----------------EKQEISVGSINLVDL 279

Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
           A     +++  +  R+ E   IN SLS L NVI AL+  +  HIPYRNSKLT +L  SLG
Sbjct: 280 A----GSESPKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLG 334

Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVK 407
           GNSKT+M   V P    ++E++ +LR+A+ V 
Sbjct: 335 GNSKTLMFINVSPFQDCFQESVKSLRFAASVN 366

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	705
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.98
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.56
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	87.61
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.33
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	85.97
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.11
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	84.28
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	82.87
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	82.24
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	80.6
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	80.59

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=5.1e-85  Score=709.99  Aligned_cols=350  Identities=38%  Similarity=0.600  Sum_probs=298.9

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      .|+|+|||||+++.|...+...++.+.. +..+.....                                      ...+
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~--------------------------------------~~~~   41 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVD-EFTVEHLWK--------------------------------------DDKA   41 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECS-TTEEEEECS--------------------------------------SSSE
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCC-CCeEEecCC--------------------------------------CCCc
Confidence            5899999999999998887777766542 223322211                                      1235


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD  176 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~  176 (705)
                      +.|+||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|...++   |||||++.+||..+....
T Consensus        42 ~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~---Giipr~~~~lf~~i~~~~  117 (364)
T d1sdma_          42 KQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLTPRAMSELFRIMKKDS  117 (364)
T ss_dssp             EEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHHHHGG
T ss_pred             eEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceeeeccccCCCCcccccccCcccc---chhHHHHHHHHhhhhhcc
Confidence            8999999999999999999875 899999999999999999999999999999987665   999999999999999888


Q ss_pred             CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229        177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN  256 (705)
Q Consensus       177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~  256 (705)
                      ....|.|++||+|||||.|+|||++......           .+.+++++..+++|.|++++.|.+++++..++..|.++
T Consensus       118 ~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~-----------~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~  186 (364)
T d1sdma_         118 NKFSFSLKAYMVELYQDTLVDLLLPKQAKRL-----------KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQ  186 (364)
T ss_dssp             GTEEEEEEEEEEEESSSCEEETTSCTTSCCC-----------CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEEEEEeccccccccCccccccc-----------ccceeecccCccccccceeeeeCCHHHHHHHhhcccee
Confidence            7889999999999999999999987654322           24568999999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229        257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK  336 (705)
Q Consensus       257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~  336 (705)
                      |.+++|.+|..|||||+||+|+|++.....                .....|+|+|||||||||..++++.|.+++|+..
T Consensus       187 R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~----------------~~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~  250 (364)
T d1sdma_         187 RHTTGTLMNEQSSRSHLIVSVIIESTNLQT----------------QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQS  250 (364)
T ss_dssp             HCCCSSCTTCHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCSCCCC---------CCCT
T ss_pred             eccccccccccccccceEEEEEEEEeccCc----------------ceeeeEEEEeechhhccccccccccCceeeeccc
Confidence            999999999999999999999998765332                3467899999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccccc
Q psy11229        337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN  416 (705)
Q Consensus       337 IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n  416 (705)
                      ||+||++|++||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+|+||++||+||+||++|+|+|.+|
T Consensus       251 iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n  329 (364)
T d1sdma_         251 INKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN  329 (364)
T ss_dssp             TCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             cccchhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCccc
Confidence            9999999999999999876 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHh
Q psy11229        417 QDPKDALLIKYQKEISELKKKLE  439 (705)
Q Consensus       417 ~~~~~~~l~~~~~ei~~Lk~~l~  439 (705)
                      ..+.  .+.+|++++..|+.++.
T Consensus       330 ~~~~--~~~~l~~~i~~l~~~~~  350 (364)
T d1sdma_         330 VSSK--EVARLKKLVSYWKEQAG  350 (364)
T ss_dssp             EECH--HHHHHHTTTTCC-----
T ss_pred             CCHH--HHHHHHHHHHHHHHHHH
Confidence            8763  35667777777766653

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=7.5e-83  Score=691.00  Aligned_cols=339  Identities=48%  Similarity=0.745  Sum_probs=307.2

Q ss_pred             CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229         13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA   92 (705)
Q Consensus        13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (705)
                      ...++|+|+|||||++..|...+...++.+.. ...+.+.++                                      
T Consensus         2 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~--------------------------------------   42 (354)
T d1goja_           2 SSANSIKVVARFRPQNRVEIESGGQPIVTFQG-PDTCTVDSK--------------------------------------   42 (354)
T ss_dssp             CSSCBCEEEEEECCCCHHHHTTTCCBCEEECS-TTEEEECST--------------------------------------
T ss_pred             CCCCCEEEEEEcCCCChHHHhcCCceEEEEEC-CCeEEEcCC--------------------------------------
Confidence            34789999999999999999888877777643 333433222                                      


Q ss_pred             CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC-CCCCCCchHHHHHHHHHh
Q psy11229         93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN-VPELKGIIPNSFAHIFGH  171 (705)
Q Consensus        93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~-~~~~~GIipr~~~~lF~~  171 (705)
                       ...+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|... +++..|||||++.+||..
T Consensus        43 -~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~  121 (354)
T d1goja_          43 -EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS  121 (354)
T ss_dssp             -TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHH
T ss_pred             -CCcceEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceeeecccccCcccceecchhHHHHhhh
Confidence             235789999999999999999999999999999999999999999999999999999654 456679999999999999


Q ss_pred             hhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHH
Q psy11229        172 IAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMS  251 (705)
Q Consensus       172 i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~  251 (705)
                      +........|.|+|||+|||||.|+|||++....              +.+++++++|++|.|++++.|.+++++..++.
T Consensus       122 ~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~--------------l~~~e~~~~~~~v~~l~~~~v~s~~~~~~~l~  187 (354)
T d1goja_         122 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN--------------LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMR  187 (354)
T ss_dssp             HHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCS--------------CCEEEETTTEEEETTCCCEECCSHHHHHHHHH
T ss_pred             hcccccCceEEEEeehhheecceEeecccccccc--------------eeeeeecCCCEeecCceeecchhHHHHHHHHh
Confidence            9888778899999999999999999999875432              34589999999999999999999999999999


Q ss_pred             hhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccH
Q psy11229        252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRL  331 (705)
Q Consensus       252 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl  331 (705)
                      .|..+|.+++|.+|..|||||+||+|+|.+.....                +....++|+|||||||||..++++.|.++
T Consensus       188 ~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~----------------~~~~~s~l~~vDLAGsE~~~~~~~~~~~~  251 (354)
T d1goja_         188 RGGNARAVAATNMNQESSRSHSIFVITITQKNVET----------------GSAKSGQLFLVDLAGSEKVGKTGASGQTL  251 (354)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCSCCTTSSSCCCCT
T ss_pred             hcccccccccccccccccccceEEEEEEEEeecCC----------------CCeEEEEEEEeeccCcccccccCCccchh
Confidence            99999999999999999999999999998765432                34668999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccc
Q psy11229        332 KEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN  411 (705)
Q Consensus       332 kE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n  411 (705)
                      +|+..||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||||+..+|+||++||+||++|++|+|
T Consensus       252 ~e~~~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~TL~fa~~~~~i~~  331 (354)
T d1goja_         252 EEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN  331 (354)
T ss_dssp             TTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBC
T ss_pred             hhhhhhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhccCc
Confidence            99999999999999999999998878999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcch
Q psy11229        412 KARVNQDPKD  421 (705)
Q Consensus       412 ~~~~n~~~~~  421 (705)
                      +|++|.+...
T Consensus       332 ~~~~n~~~~~  341 (354)
T d1goja_         332 KAKVNAELSP  341 (354)
T ss_dssp             CCCCCSSSSC
T ss_pred             cceEcCCCCH
Confidence            9999987643

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=3.2e-82  Score=683.85  Aligned_cols=337  Identities=46%  Similarity=0.691  Sum_probs=283.5

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      ||||+|||||++..|...+...++.+++....|.+..+..                                  ......
T Consensus         1 NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------~~~~~~   46 (345)
T d1x88a1           1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL----------------------------------ADKSSR   46 (345)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE----------------------------------TTEEEE
T ss_pred             CeEEEEEECCCChhhhccCCCeEEEEcCCCceEEEecCCC----------------------------------CCCCCc
Confidence            7999999999999999999999999999988888875510                                  001235


Q ss_pred             eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCC--------CCCCchHHHHHHH
Q psy11229         97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVP--------ELKGIIPNSFAHI  168 (705)
Q Consensus        97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~--------~~~GIipr~~~~l  168 (705)
                      +.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|.....        ...|||||++.+|
T Consensus        47 ~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l  126 (345)
T d1x88a1          47 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQI  126 (345)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHH
T ss_pred             ceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccCCceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999986532        2359999999999


Q ss_pred             HHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHH
Q psy11229        169 FGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK  248 (705)
Q Consensus       169 F~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~  248 (705)
                      |..+...  +..|.|+|||+|||||+|+|||++......         ...+...++...|++|.||+++.|.|++|+..
T Consensus       127 f~~~~~~--~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~---------~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~  195 (345)
T d1x88a1         127 FEKLTDN--GTEFSVKVSLLEIYNEELFDLLNPSSDVSE---------RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQ  195 (345)
T ss_dssp             HHHTSSS--SEEEEEEEEEEEEETTEEEETTCTTSCTTC---------CBEEEEETTEEEEEEEETCCCEEECSGGGHHH
T ss_pred             HHhhhcc--CceEEEEEEEEEEECCeeEECCCCCCcccc---------cceeeecccCCCCEEEcCCEEEEeCCHHHHHH
Confidence            9988754  578999999999999999999987543211         11233355667789999999999999999999


Q ss_pred             HHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcc
Q psy11229        249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASG  328 (705)
Q Consensus       249 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g  328 (705)
                      +|..|.++|++++|.+|..|||||+||+|+|.......+.             ...+..|+|+|||||||||..+++..|
T Consensus       196 ~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~-------------~~~~~~s~l~~vDLAGsEr~~~~~~~~  262 (345)
T d1x88a1         196 ILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG-------------EELVKIGKLNLVDLAGSENIGRSGAVD  262 (345)
T ss_dssp             HHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS-------------CEEEEEEEEEEEECCCCCC--------
T ss_pred             HHHhhhccccccccCccccccccceEEEEEEEEeeccCCC-------------CCceEeeeEEEEecCCccccccccchh
Confidence            9999999999999999999999999999999876522111             145678999999999999999999999


Q ss_pred             ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229        329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK  408 (705)
Q Consensus       329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~  408 (705)
                      .+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||++
T Consensus       263 ~~~~e~~~in~Sl~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~  341 (345)
T d1x88a1         263 KRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN  341 (345)
T ss_dssp             -------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTT
T ss_pred             hhhcccccccchHHHHHHHHHHHhcCC-CcCCCccCHHHHHhHHhcCCCCcEEEEEEeCCchhhHHHHHHHHHHHHHhhh
Confidence            999999999999999999999998865 7999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy11229        409 ICNK  412 (705)
Q Consensus       409 I~n~  412 (705)
                      |+|+
T Consensus       342 I~nk  345 (345)
T d1x88a1         342 ILNK  345 (345)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            9986

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=1.9e-81  Score=681.19  Aligned_cols=328  Identities=39%  Similarity=0.556  Sum_probs=264.5

Q ss_pred             CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229         14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH   93 (705)
Q Consensus        14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (705)
                      ..++|+|+|||||+++.|...++..+|.++ .+..+.+.+|....                              .....
T Consensus        28 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-~~~~~~~~~~~~~~------------------------------~~~~~   76 (362)
T d1v8ka_          28 EEHRICVCVRKRPLNKQELAKKEIDVISVP-SKCLLLVHEPKLKV------------------------------DLTKY   76 (362)
T ss_dssp             SCCCEEEEEEECCCCHHHHHTTCCBCEECC-SSSEEEEEEEEECT------------------------------TCCEE
T ss_pred             CCCCEEEEEEeCCCChHHhhCCCceEEEEC-CCcEEEEeCCcccc------------------------------ccccC
Confidence            356899999999999999999988888874 34556555441000                              00011


Q ss_pred             CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC---CCCCCchHHHHHHHHH
Q psy11229         94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFG  170 (705)
Q Consensus        94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~~~~GIipr~~~~lF~  170 (705)
                      ..++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....   ....||+||++++||.
T Consensus        77 ~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~  156 (362)
T d1v8ka_          77 LENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFL  156 (362)
T ss_dssp             EEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHH
T ss_pred             cCceeEeCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHH
Confidence            2357899999999999999999999999999999999999999999999999999997532   2346999999999999


Q ss_pred             hhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229        171 HIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI  249 (705)
Q Consensus       171 ~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l  249 (705)
                      .+.... ....|.|+|||+|||||+|+|||++...               +.+++++..+++|.|++++.|.|++|+..+
T Consensus       157 ~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~---------------~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~  221 (362)
T d1v8ka_         157 LKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQVQVVGLQEYLVTCADDVIKM  221 (362)
T ss_dssp             HHTSHHHHTTCCEEEEEEEEEETTEEEETTTTTEE---------------EEEEECSSCCEEEETCCCEEESSHHHHHHH
T ss_pred             HhhcccccccchhheeeeeeecCCeEEecccCCcc---------------ccccccccCCcccCCCEEEEecCHHHHHHH
Confidence            886532 3568999999999999999999976532               345899999999999999999999999999


Q ss_pred             HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC-cc
Q psy11229        250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA-SG  328 (705)
Q Consensus       250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g  328 (705)
                      +..|..+|.+++|.+|..|||||+||+|.|.+..                     ...|+|+|||||||||..+++. .+
T Consensus       222 l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~~---------------------~~~~~l~~VDLAGsEr~~~~~~~~~  280 (362)
T d1v8ka_         222 INMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------------------RLHGKFSLVDLAGNERGADTSSADR  280 (362)
T ss_dssp             HHHHHHTCC--------CCCSSEEEEEEEEESSS---------------------SEEEEEEEEECCCCCC---------
T ss_pred             HhccccccccccccCcccCcceeeEEEEEEEecc---------------------eeeeeEeeeecccccccccccccch
Confidence            9999999999999999999999999999997432                     2458999999999999988754 45


Q ss_pred             ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhcc-CCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229        329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVK  407 (705)
Q Consensus       329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqds-LgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak  407 (705)
                      .+++|+.+||+||++||+||.+|++++ .||||||||||+||||+ |||||+|+|||||||+..+++||++||+||+|||
T Consensus       281 ~~~~E~~~IN~SL~~L~~vi~aL~~~~-~hiPyR~SkLT~lLkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak  359 (362)
T d1v8ka_         281 QTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK  359 (362)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHhcCC-CcCCCccCHHHHhhhhccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHh
Confidence            788899999999999999999998866 79999999999999998 7999999999999999999999999999999999


Q ss_pred             cc
Q psy11229        408 KI  409 (705)
Q Consensus       408 ~I  409 (705)
                      +|
T Consensus       360 ~I  361 (362)
T d1v8ka_         360 EL  361 (362)
T ss_dssp             TT
T ss_pred             cC
Confidence            98

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=8.4e-80  Score=665.78  Aligned_cols=328  Identities=44%  Similarity=0.713  Sum_probs=281.1

Q ss_pred             CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229         17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP   96 (705)
Q Consensus        17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   96 (705)
                      +|||+|||||+++.|...+...++.++  +..+.+.+|..                                   ....+
T Consensus         2 sIrV~vRvRP~~~~E~~~~~~~~~~~~--~~~~~~~~~~~-----------------------------------~~~~~   44 (349)
T d2zfia1           2 SVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNPKQ-----------------------------------PKETP   44 (349)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEE--TTEEEECCTTC-----------------------------------TTSCC
T ss_pred             cEEEEEEeCCCChhHhcCCCcEEEEEC--CCcEEEECCCC-----------------------------------CCcCC
Confidence            799999999999999888888888876  34566665520                                   12346


Q ss_pred             eeEeeceeeCCC--------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHH
Q psy11229         97 KTFTFDTVFDAN--------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHI  168 (705)
Q Consensus        97 ~~F~FD~Vf~~~--------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~l  168 (705)
                      +.|+||+||+++        ++|++||+.++.|+|+++++|||+||||||||||||||||+|+++. ...|||||++++|
T Consensus        45 k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~-~~~Glipr~l~~l  123 (349)
T d2zfia1          45 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-DQQGIIPQLCEDL  123 (349)
T ss_dssp             EEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGG-GCBCHHHHHHHHH
T ss_pred             eeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhccCceeeeeccCCCCCceeeccCccc-cccCchHHHHhhh
Confidence            899999999987        5799999999999999999999999999999999999999997542 2459999999999


Q ss_pred             HHhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHH
Q psy11229        169 FGHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME  247 (705)
Q Consensus       169 F~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~  247 (705)
                      |..+.... ....|.|.|||+|||||+|||||++.....+             .+++++.+|++|.|++++.|.+++|+.
T Consensus       124 f~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~~~~~~-------------~i~~~~~~~~~v~~l~~~~v~s~~e~~  190 (349)
T d2zfia1         124 FSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL-------------RVREHPLLGPYVEDLSKLAVTSYNDIQ  190 (349)
T ss_dssp             HHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSCB-------------CEEEETTTEEEETTCCCEECCSHHHHH
T ss_pred             hhhccccccCCcceEEEEEeeeeeCCEEEecccccccCCc-------------eEEecCCCCcEEEEeEEEeccCHHHHH
Confidence            99997643 4678999999999999999999987655433             348999999999999999999999999


Q ss_pred             HHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCc
Q psy11229        248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGAS  327 (705)
Q Consensus       248 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~  327 (705)
                      .+|..|..+|.+++|.+|..|||||+||+|.+.+.......            .......|+|+|||||||||..+++..
T Consensus       191 ~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~  258 (349)
T d2zfia1         191 DLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET------------NITTEKVSKISLVDLAGSERADSTGAK  258 (349)
T ss_dssp             HHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT------------TCEEEEEEEEEEEECCCGGGC------
T ss_pred             HHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCC------------CcccceeeEEEEeecccchhhhhcCCc
Confidence            99999999999999999999999999999999876422111            113456799999999999999999999


Q ss_pred             cccHHHHHHhhhhHHHHHHHHHHHhcC-----------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHH
Q psy11229        328 GQRLKEASKINLSLSTLGNVISALVDG-----------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET  396 (705)
Q Consensus       328 g~rlkE~~~IN~SL~aL~~vI~aL~~~-----------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ET  396 (705)
                      |.+++|+.+||+||++|++||.+|+++           +..|||||+|||||||+|+|||||+|+||+||||+..+|+||
T Consensus       259 g~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~s~t~~I~~vsp~~~~~~eT  338 (349)
T d2zfia1         259 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET  338 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHH
T ss_pred             ccchhhccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCCccEEEEEEeCCChhhHHHH
Confidence            999999999999999999999999752           236999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy11229        397 ISTLRYASRVK  407 (705)
Q Consensus       397 lsTLrfa~rak  407 (705)
                      ++||+||+|||
T Consensus       339 l~TL~fa~rak  349 (349)
T d2zfia1         339 LSTLRYADRAK  349 (349)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999986

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-80  Score=662.38  Aligned_cols=319  Identities=47%  Similarity=0.705  Sum_probs=292.4

Q ss_pred             CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229         16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP   95 (705)
Q Consensus        16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   95 (705)
                      .||||+|||||+++.|...+...++.+.... .+.+                                           .
T Consensus         5 ~NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~~~-------------------------------------------~   40 (323)
T d1bg2a_           5 CNIKVMCRFRPLNESEVNRGDKYIAKFQGED-TVVI-------------------------------------------A   40 (323)
T ss_dssp             CEEEEEEEECCCCHHHHHHTCCBCCEEETTT-EEEE-------------------------------------------T
T ss_pred             CCEEEEEEeCCCChHHhccCCceEEEECCCC-eEEE-------------------------------------------C
Confidence            5799999999999999887777666654321 1111                                           1


Q ss_pred             CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229         96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA  175 (705)
Q Consensus        96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~  175 (705)
                      ++.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|...+++..|||||++.+||..+...
T Consensus        41 ~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~  120 (323)
T d1bg2a_          41 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM  120 (323)
T ss_dssp             TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHH
T ss_pred             CceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229        176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK  255 (705)
Q Consensus       176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~  255 (705)
                      .....|.|+|||+|||||+|||||.+....              +.+++++.+++++.|++++.|.+++++..++..|.+
T Consensus       121 ~~~~~~~v~~S~~EIyne~i~DLL~~~~~~--------------~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~~~~  186 (323)
T d1bg2a_         121 DENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------------LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKS  186 (323)
T ss_dssp             CSSEEEEEEEEEEEEETTEEEESSCTTCCS--------------BCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHH
T ss_pred             ccccceEEEEEEEEEEcCcccccccccccc--------------eeEeeccccceeecCCEEEEEeccHhHhHHhhhccc
Confidence            888999999999999999999999875432              345899999999999999999999999999999999


Q ss_pred             cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229        256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS  335 (705)
Q Consensus       256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  335 (705)
                      +|.+++|.+|..|||||+||+|++.+.....                .....|+|+|||||||||..+++..+.+++|+.
T Consensus       187 ~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~----------------~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~~  250 (323)
T d1bg2a_         187 NRHVAVTNMNEHSSRSHSIFLINVKQENTQT----------------EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAK  250 (323)
T ss_dssp             HTTTTCSCHHHHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCC
T ss_pred             ceeecccCCCCCCCccceEEEEEEEEEeCCC----------------CcEEEEEEEEEecccccccccccchhhhhhhhh
Confidence            9999999999999999999999998765332                345679999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229        336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI  409 (705)
Q Consensus       336 ~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I  409 (705)
                      .||+||++|++||.+|++++ .|||||+||||+||+|+||||++|+||+||||+..+++||++||+||+|||+|
T Consensus       251 ~iN~SL~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~I  323 (323)
T d1bg2a_         251 NINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  323 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             cccccHHHHHHHHHHHhcCC-CccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcCC
Confidence            99999999999999999876 79999999999999999999999999999999999999999999999999986

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.6e-79  Score=658.79  Aligned_cols=325  Identities=34%  Similarity=0.517  Sum_probs=279.9

Q ss_pred             eEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCCe
Q psy11229         18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPK   97 (705)
Q Consensus        18 VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   97 (705)
                      |||+|||||+++.|...+...++.+. .+..+.+.+|....                              ........+
T Consensus         2 IkV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~v~~~~~~~------------------------------~~~~~~~~~   50 (330)
T d1ry6a_           2 IKVVVRKRPLSELEKKKKDSDIITVK-NNCTLYIDEPRYKV------------------------------DMTKYIERH   50 (330)
T ss_dssp             EEEEEEECCCCHHHHHTTCCBCEEEE-ETTEEEEEEEEEET------------------------------TTEEEEEEE
T ss_pred             EEEEEEeCCCChHHHhcCCceEEEEC-CCcEEEEcCCcccc------------------------------ccccCcCcc
Confidence            89999999999999988888888775 44567666552000                              000011247


Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhh-CCCCEEEEEeccCCCCccccccccCC--CCCCCCchHHHHHHHHHhhhh
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVL-SGFNGTIFAYGQTGTGKTFTMEGVNN--VPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl-~G~N~tIfaYGqTgSGKT~Tm~G~~~--~~~~~GIipr~~~~lF~~i~~  174 (705)
                      .|+||+||+++++|++||+.++.|+|.+++ +|||+||||||||||||||||+|...  ..+..|||||++.+||..+..
T Consensus        51 ~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~  130 (330)
T d1ry6a_          51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNI  130 (330)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHH
T ss_pred             eEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhh
Confidence            899999999999999999999999999888 59999999999999999999999753  224569999999999999988


Q ss_pred             cCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229        175 ADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN  254 (705)
Q Consensus       175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~  254 (705)
                      ......|.|.|||+|||||+|+|||++.+.               +.+++++.+++++.|++++.|.+++|+..++..|.
T Consensus       131 ~~~~~~~~v~~S~~EIyne~i~DLL~~~~~---------------~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~  195 (330)
T d1ry6a_         131 YDKDNTKGIFISFYEIYCGKLYDLLQKRKM---------------VAALENGKKEVVVKDLKILRVLTKEELILKMIDGV  195 (330)
T ss_dssp             HCSSSCEEEEEEEEEEETTEEEESCCC--------------------------CCBCGGGSCCEEECSHHHHHHHHHHHH
T ss_pred             hcccceEEEEEEEEeeeccccccccccccc---------------ceeeecCCCCccccCceEEEEeeccchhhhhhccc
Confidence            877889999999999999999999986532               23478889999999999999999999999999999


Q ss_pred             ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccH-HH
Q psy11229        255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRL-KE  333 (705)
Q Consensus       255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl-kE  333 (705)
                      .+|.+++|.+|..|||||+||+|.+....                   .....|+|+|||||||||..++++.|.+. .|
T Consensus       196 ~~R~~~~t~~n~~ssRsh~i~~i~v~~~~-------------------~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~~e  256 (330)
T d1ry6a_         196 LLRKIGVNSQNDESSRSHAILNIDLKDIN-------------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTD  256 (330)
T ss_dssp             HHHHHCTTCCTTGGGGSEEEEEEEEEETT-------------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHH
T ss_pred             ccccccccccccccCCcceEEEEEEEecc-------------------cccccceeeeecccccccccccccCCchhhhh
Confidence            99999999999999999999999997643                   23457999999999999999998888765 69


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK  408 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~  408 (705)
                      +..||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+
T Consensus       257 ~~~IN~sL~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         257 GANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC
T ss_pred             hhhhhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhHHHHHHHHHHHHHhcC
Confidence            9999999999999999998876 7999999999999999999999999999999999999999999999999985

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=2.6e-78  Score=652.32  Aligned_cols=291  Identities=41%  Similarity=0.611  Sum_probs=241.6

Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      ..+.|+||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|..     .|||||++.+||..+..
T Consensus        48 ~~~~f~FD~vf~~~~~q~~vy~~v-~~~v~~~l~G~n~~i~aYGqtgSGKT~T~~G~~-----~Giipr~~~~lf~~~~~  121 (342)
T d1f9va_          48 QVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINK  121 (342)
T ss_dssp             CEEEEEESEEECTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHH
T ss_pred             CceEeecCeEeCCCCCHHHHHHHh-hhhhcchhcccccceeeeeccCCccccccccCc-----CchhHHHHHHHHhhhhh
Confidence            468999999999999999999975 599999999999999999999999999999953     49999999999999876


Q ss_pred             c-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        175 A-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       175 ~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      . ..+..|.|+|||+|||||+|||||++........    ..+.......+....+++|.|++++.|.+++|+..++..|
T Consensus       122 ~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g  197 (342)
T d1f9va_         122 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT----SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKA  197 (342)
T ss_dssp             HGGGTCEEEEEEEEEEEETTEEEETTC-----------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHH
T ss_pred             hhccccccceeeeeeeeccCeeEECCCCCCCccccc----cccceeeeeecCCCCcEEEeeeEEEEecchHHHHHHHhhh
Confidence            4 3467899999999999999999998765432111    1111111224556688999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|.+++|.+|..|||||+||+|.|.......                +....|+|+|||||||||..+++..+.+++|
T Consensus       198 ~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~~----------------~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e  261 (342)
T d1f9va_         198 NKLRSTASTASNEHSSASHSIFIIHLSGSNAKT----------------GAHSYGTLNLVDLAGSERINVSQVVGDRLRE  261 (342)
T ss_dssp             C-----------CCGGGSEEEEEEEEEEECC------------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHH
T ss_pred             hhccccccccccccCcccceeEEEEEEEecCCc----------------cceeeeeeeeeeccCCcccccccchhhhhhh
Confidence            999999999999999999999999998765322                3456799999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccc
Q psy11229        334 ASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN  411 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n  411 (705)
                      +..||+||++|++||.+|+.++  ..|||||+||||+||+|+||||++|+||+||||+..+|+||++||+||+|||+|+.
T Consensus       262 ~~~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         262 TQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             hhhccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence            9999999999999999998743  36999999999999999999999999999999999999999999999999999974

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.6e-77  Score=651.85  Aligned_cols=323  Identities=35%  Similarity=0.572  Sum_probs=271.5

Q ss_pred             CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229         15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE   94 (705)
Q Consensus        15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   94 (705)
                      .|||||+|||||+++.|...+...++..  .+..+.+..+..                                ......
T Consensus        44 ~gnIkV~vRvRP~~~~E~~~~~~~~~~~--~~~~v~~~~~~~--------------------------------~~~~~~   89 (368)
T d2ncda_          44 RGNIRVFCRIRPPLESEENRMCCTWTYH--DESTVELQSIDA--------------------------------QAKSKM   89 (368)
T ss_dssp             HCSEEEEEEECCCCGGGTTSCBCEEEEE--TTTEEEEECSCH--------------------------------HHHTTT
T ss_pred             cCCEEEEEEeCCCCchhcCCCCcEEEeC--CCCeEEEccCCc--------------------------------cccCCc
Confidence            4799999999999999876655444333  455666654410                                000123


Q ss_pred             CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229         95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK  174 (705)
Q Consensus        95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~  174 (705)
                      ..++|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|.+..+   |||||++.+||..+..
T Consensus        90 ~~~~F~FD~vf~~~~~Q~~Vy~~-v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~---Giipr~~~~Lf~~~~~  165 (368)
T d2ncda_          90 GQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV---GVIPRTVDLLFDSIRG  165 (368)
T ss_dssp             CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEE---CHHHHHHHHHHHHHHH
T ss_pred             CceeeECCeEECCCCCccchHHH-HHHHHHHHhcccceeEEeeccCCCccceEeccccccc---chhhHHHHHHhhhhhh
Confidence            35889999999999999999975 5799999999999999999999999999999987654   9999999999999876


Q ss_pred             c-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229        175 A-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG  253 (705)
Q Consensus       175 ~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g  253 (705)
                      . +.+..|.|+|||+|||||.|||||++.....            ...+.+++.+++++.|++++.|.+++++..++..|
T Consensus       166 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~------------~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g  233 (368)
T d2ncda_         166 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM------------EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA  233 (368)
T ss_dssp             HHTTSCEEEEEEEEEEESSSCEEETTCSSCCCC------------CEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHH
T ss_pred             hccccccceEEEEEEEEecceeecccccccccc------------cceeeccccccccccccceeccCCHHHHHHHHHHH
Confidence            4 3467899999999999999999998764321            12346888999999999999999999999999999


Q ss_pred             hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229        254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE  333 (705)
Q Consensus       254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE  333 (705)
                      .++|.++.|.+|..|||||+||+|+|.......                +....|+|+||||||||+...    +.+++|
T Consensus       234 ~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~----------------~~~~~s~l~~VDLAGse~~~~----~~~~~E  293 (368)
T d2ncda_         234 KMNRATASTAGNERSSRSHAVTKLELIGRHAEK----------------QEISVGSINLVDLAGSESPKT----STRMTE  293 (368)
T ss_dssp             HHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTS----------------CCEEEEEEEEEECCCCCCC------------
T ss_pred             HhhcccccccccccccccceEEEEEEEEEecCC----------------CceEeeeeeeeeeccccccch----hhhhcc
Confidence            999999999999999999999999998765332                346789999999999998653    678999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229        334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK  408 (705)
Q Consensus       334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~  408 (705)
                      +..||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||+..+|+||++||+||+|||+
T Consensus       294 ~~~IN~SL~aL~~vi~aL~~~~-~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~  367 (368)
T d2ncda_         294 TKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS  367 (368)
T ss_dssp             --CTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTT
T ss_pred             cccchhhHHHHHHHHHHHhcCC-CCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999865 7999999999999999999999999999999999999999999999999985

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.98  E-value=0.011  Score=56.46  Aligned_cols=50  Identities=26%  Similarity=0.474  Sum_probs=34.0

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      .|+||.-|-.. +++..|.. +..+++..-.++|. ++-||++||||||-+.+
T Consensus         6 ~~tFdnF~vg~-~N~~a~~~-~~~~~~~~~~~~n~-l~l~G~~G~GKTHLl~A   55 (213)
T d1l8qa2           6 KYTLENFIVGE-GNRLAYEV-VKEALENLGSLYNP-IFIYGSVGTGKTHLLQA   55 (213)
T ss_dssp             TCCSSSCCCCT-TTHHHHHH-HHHHHHTTTTSCSS-EEEECSSSSSHHHHHHH
T ss_pred             CCChhhccCCC-cHHHHHHH-HHHHHhCcCCCCCc-EEEECCCCCcHHHHHHH
Confidence            38899866533 35556644 35555554445564 78999999999998854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=0.017  Score=56.77  Aligned_cols=51  Identities=18%  Similarity=0.325  Sum_probs=39.8

Q ss_pred             eEeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCccccc
Q psy11229         98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .++||.|.+.+..-+.+++.+..|+.. ..+.  |  +...|+-||++|||||+.+
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            378999999888888999888777752 3333  2  3457999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.56  E-value=0.045  Score=52.57  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=22.7

Q ss_pred             HHhhhhhHHHHhhCCCCE-----EEEEeccCCCCcccccc
Q psy11229        115 YNETARPIVDKVLSGFNG-----TIFAYGQTGTGKTFTME  149 (705)
Q Consensus       115 y~~~~~plV~~vl~G~N~-----tIfaYGqTgSGKT~Tm~  149 (705)
                      ++.++.-+...++.|-..     .++.||++|+|||+++.
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~   64 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK   64 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHH
Confidence            334333344555555433     46779999999999883

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.61  E-value=0.11  Score=49.76  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             hhHHHHhhCCCCE-----EEEEeccCCCCccccc
Q psy11229        120 RPIVDKVLSGFNG-----TIFAYGQTGTGKTFTM  148 (705)
Q Consensus       120 ~plV~~vl~G~N~-----tIfaYGqTgSGKT~Tm  148 (705)
                      ...|..++.|...     .|+-||++|||||++.
T Consensus        16 ~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          16 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHH
Confidence            3444555555554     4999999999999865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.33  E-value=0.13  Score=49.62  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-HhhC----CCCEEEEEeccCCCCccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS----GFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~----G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+||.|.+-+..-+.+ ..++.++.. ..+.    .....|+-||++|||||+..
T Consensus         6 ~~~~di~G~~~~k~~l-~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la   59 (247)
T d1ixza_           6 VTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA   59 (247)
T ss_dssp             CCGGGCCSCHHHHHHH-HHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred             CcHHHHccHHHHHHHH-HHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence            6788888766555444 334444332 1222    22345889999999999876

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.075  Score=51.82  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHH-Hhh----CCCCEEEEEeccCCCCccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVD-KVL----SGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl----~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      .+||.|.+.+..-++|-+ ++..+-. ..+    ......|+-||++|||||++.
T Consensus         9 ~t~~Di~Gl~~~k~~l~e-~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred             CCHHHHhchHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHH
Confidence            678999987766555533 2222110 111    223457899999999999986

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.66  E-value=0.13  Score=53.40  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=26.3

Q ss_pred             hHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229        121 PIVDKVLSGFNGTIFAYGQTGTGKTFTMEG  150 (705)
Q Consensus       121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G  150 (705)
                      ..+..++..-+|.|+.-|+||||||.||..
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl~~  177 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTLYA  177 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHHHH
Confidence            356778889999999999999999999964

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.11  E-value=0.14  Score=49.67  Aligned_cols=49  Identities=27%  Similarity=0.432  Sum_probs=33.7

Q ss_pred             eeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc
Q psy11229        100 TFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm  148 (705)
                      +||.|-+-+..-+.+-+.+..|+.. ..+.  |.  .-.|+-||++|||||+..
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~   55 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA   55 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHH
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHH
Confidence            4788888777666666666555552 2333  32  335889999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=84.28  E-value=0.27  Score=46.45  Aligned_cols=19  Identities=37%  Similarity=0.483  Sum_probs=15.9

Q ss_pred             CCEEEEEeccCCCCccccc
Q psy11229        130 FNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       130 ~N~tIfaYGqTgSGKT~Tm  148 (705)
                      ...+++-||++|+|||+++
T Consensus        42 ~~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHH
T ss_pred             CCCceEEECCCCCCHHHHH
Confidence            3457899999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.87  E-value=0.2  Score=46.90  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             HhhCCCCEEEEEeccCCCCcccccc
Q psy11229        125 KVLSGFNGTIFAYGQTGTGKTFTME  149 (705)
Q Consensus       125 ~vl~G~N~tIfaYGqTgSGKT~Tm~  149 (705)
                      .+-.+....++-||++|+|||.+..
T Consensus        27 ~i~~~~~~~lll~Gp~G~GKTtl~~   51 (237)
T d1sxjd2          27 TLKSANLPHMLFYGPPGTGKTSTIL   51 (237)
T ss_dssp             HTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred             HHHcCCCCeEEEECCCCCChHHHHH
Confidence            3334555668999999999998863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=82.24  E-value=0.27  Score=47.28  Aligned_cols=49  Identities=10%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC---EEEEEeccCCCCccccc
Q psy11229         99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFN---GTIFAYGQTGTGKTFTM  148 (705)
Q Consensus        99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N---~tIfaYGqTgSGKT~Tm  148 (705)
                      |-.+.++++...=+.|.+. +..+++.+-.+-+   .+|+-||++|||||+..
T Consensus         6 ~~~~~~i~~~~~i~~i~~~-~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la   57 (246)
T d1d2na_           6 YIMNGIIKWGDPVTRVLDD-GELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA   57 (246)
T ss_dssp             TCTTCCCCCSHHHHHHHHH-HHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred             hhccCCcCcCHHHHHHHHH-HHHHHHHHhccCCCCCeEEEEECcCCCCHHHHH
Confidence            3344555544333444444 3456666554443   47899999999999865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.60  E-value=0.31  Score=45.58  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=26.5

Q ss_pred             eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229        100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM  148 (705)
Q Consensus       100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm  148 (705)
                      +||.+.+    |+++-+.    |-..+-.|....++-||++|+|||.++
T Consensus        22 ~~~diig----~~~~~~~----l~~~i~~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          22 RLDDIVG----QEHIVKR----LKHYVKTGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             STTTCCS----CHHHHHH----HHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred             CHHHccC----cHHHHHH----HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence            4566554    3444432    333333566667899999999999876

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=22  Score=32.84  Aligned_cols=17  Identities=6%  Similarity=0.393  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11229        589 RKEIEGFLDNVRQITKE  605 (705)
Q Consensus       589 ~~e~e~~~~~~~~~~~e  605 (705)
                      ...+..+++.+..++.+
T Consensus       206 ~~~~~~~~~~~q~~e~~  222 (288)
T d2efla1         206 HTHIPNIFQKIQEMEER  222 (288)
T ss_dssp             HTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444555555544444