Psyllid ID: psy11230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
Protein Sequence
FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHcc
Coil and Loop (DISEMBL)
fdadvnatNKEGITLFQQAIVSSQTPIAKLLAErganindpfpddgksclHIAATKNIRLVRLLLEYNvdvnavdnlgNTVLHTVASIKTRDPTAVEILKTNranvniknkegdtplhiaartGNYKMVRVLIDHgahtecknhqgynaLHVAVGILLRkgadinvennfgKTAFQMAYEMKNFPAIELFLKYGVNveqcvchenvkhGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDhgacvdslqfihsplhlAIEKQHIAIVQLLLRRnnnninintkgptnkaplHLVVQRKSWNTTMFKTLLYHganvnvkddenktplHIAIESQCWDAVSLLVKHgadvnvidnqgqmplhiAVQNgyvaipnlirhganvnarnkyaktplHIAVEQKNMSALNYLLEhgaqvdartqlgkdplYIAVEMHNLSIVEQLLKFKAnvnssdqfGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLdynpdldvkdkngntalhps
Flexible Loop (DISEMBL)
FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTvasiktrdptaveilktnranvniknkegdtplhiAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNINintkgptnkaplHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDynpdldvkdkngntalhps
Low Complexity Region (SEG)
FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQlllrrnnnnininTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS
Disordered region (IsUnstruct)
***********GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP****************
Disordered Region (DISOPRED)
FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS
Disordered Region (DISEMBL)
********NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS
Disordered Region (DISPRO)
****VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD***************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	553	2.2.26 [Sep-21-2011]
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	N/A	0.891	0.112	0.306	2e-56
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.891	0.418	0.315	3e-56
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.891	0.251	0.304	3e-52
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.954	0.133	0.312	5e-52
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.954	0.135	0.310	7e-52
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.978	0.287	0.276	2e-48
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.978	0.290	0.278	6e-48
Q502K3	1071	Serine/threonine-protein	no	N/A	0.815	0.421	0.300	3e-47
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.936	0.362	0.275	8e-46
Q505D1	1053	Serine/threonine-protein	no	N/A	0.806	0.423	0.313	2e-44

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  220 bits (561), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 159/519 (30%), Positives = 254/519 (48%), Gaps = 26/519 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
           A ++A  ++G+T       S    + ++L +R A I      +G S LH+A    ++  V
Sbjct: 292 AKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSK-TKNGLSPLHMATQGDHLNCV 350

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           +LLL++NV V+ V N   T LH  A          ++L   +AN N K   G TPLHIA 
Sbjct: 351 QLLLQHNVPVDDVTNDYLTALHVAAHCGHY--KVAKVLLDKKANPNAKALNGFTPLHIAC 408

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
           +    K++ +L+ HGA  +     G   +HVA        V  L+  GA  N  N  G+T
Sbjct: 409 KKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGET 468

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
           A  MA        +   ++ G  VE     +      Q  LH+  R G  + V+ +L++G
Sbjct: 469 ALHMAARSGQAEVVRYLVQDGAQVEAKAKDD------QTPLHISARLGKADIVQQLLQQG 522

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
           A+ +A      T L ++   GH  +  FLLDHGA +  + +   +PLH+A +   + +  
Sbjct: 523 ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVAN 582

Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
           LLL+++ +    +  G +   PLH+     +    +   LL  GA+ +       TPLHI
Sbjct: 583 LLLQKSASP---DAAGKSGLTPLHVAAHYDNQKVALL--LLDQGASPHAAAKNGYTPLHI 637

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR-HGANVNARNKYA 410
           A +    D  + L+++GAD N +  QG   +H+A Q G+V + +L+    ANVN  NK  
Sbjct: 638 AAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSG 697

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            TPLH+A ++  ++    L+  GA VDA+T++G  PL++     N+ IV  LL+  A VN
Sbjct: 698 LTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVN 757

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
           +  + G T LH A +  +  I+  LL N A  N   ++G
Sbjct: 758 AKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNG 796

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.
Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 169/536 (31%), Positives = 274/536 (51%), Gaps = 43/536 (8%)

Query: 3    ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
            A+ NATN  G+     A  +    +AKLLA+ GA++N    D+G++ LH A  + N+ LV
Sbjct: 629  ANPNATNCHGVISLHCAAKNGNLDLAKLLAKNGADVNAK-TDNGETVLHYAVKSGNLHLV 687

Query: 62   RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            + L+E   +++A  + G TVLH   S    D   V +L    A+VN K   G T LH A 
Sbjct: 688  KWLIENQANIHAKTDNGETVLHYAVSFNNSD--LVYLLIAYGADVNAKTDNGLTALHYAV 745

Query: 122  RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKT 173
              GN  +V +LI HGA    K + G   L+ AV         +L+  GAD+N + + G+T
Sbjct: 746  YDGNLDLVSLLISHGADVNAKTNSGETILYSAVDYGSPDLVYLLIAYGADVNAKTDNGET 805

Query: 174  AFQMAYEMKNFPAIELFLKYGVNVE--QCVCHENVKHG---------------------G 210
                A E  N   + L +  G NV   + + H   K G                     G
Sbjct: 806  VLHYAVESGNLDLVSLLIHNGANVNNAKTILHFAAKSGNLNLVNWLIKNKADIHAKTNSG 865

Query: 211  QLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
            + +LH    +G+ N V  +++  A++HAK    +T L  A + G+L +V +L+ + A + 
Sbjct: 866  ETILHFAAESGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIH 925

Query: 270  S-LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMF 328
            +      + LH A +  ++ +V  L++   N  +I+ K  + +  LH   +  S N  + 
Sbjct: 926  AKTNSGETILHFAAKSGNLNLVNWLIK---NKADIHAKTNSGETILHFAAE--SGNLNLV 980

Query: 329  KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
              L+++G ++N K D+  T LH A+ES   + VSLL+  G DVN   N G+  LH AV  
Sbjct: 981  SLLIHNGTDINTKTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETILHFAVDL 1040

Query: 389  GYVAIPNLIR-HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
            G + + +L+   GA+VNA+     T LH AVE  N++ ++ L+ +GA V+A+   G+ PL
Sbjct: 1041 GSLDLVSLLMVRGADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPL 1100

Query: 448  YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
            + AV  ++L +V  L+   A++N+ +  G TVL+  ++  N  IL+  ++  ADIN
Sbjct: 1101 HYAVIFNSLDLVSLLIHNGADINTKNNSGETVLNSIMEFNNCNILKSFILGGADIN 1156

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 158/519 (30%), Positives = 254/519 (48%), Gaps = 26/519 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           A ++A  ++G+T       S    + ++L +R A I      +G S LH+A   + +  V
Sbjct: 275 AKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRSAPILSKT-KNGLSPLHMATQGDHLNCV 333

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           +LLL++NV V+ V N   T LH  A          ++L   +A+ N K   G TPLHIA 
Sbjct: 334 QLLLQHNVPVDDVTNDYLTALHVAAHCGHY--KVAKVLLDKKASPNAKALNGFTPLHIAC 391

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
           +    +++ +L+ HGA  +     G   +HVA        V  L+  GA  N  N  G+T
Sbjct: 392 KKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGET 451

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
           A  MA        +   ++ G  VE     +      Q  LH+  R G  + V+ +L++G
Sbjct: 452 ALHMAARSGQAEVVRYLVQDGAQVEAKAKDD------QTPLHISARLGKADIVQQLLQQG 505

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
           A+ +A      T L +A   GH  +  FLLDHGA +  + +   +PLH+A +   + +  
Sbjct: 506 ASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVAS 565

Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
           LLL+++    + +  G +   PLH+     +    +   LL  GA+ +       TPLHI
Sbjct: 566 LLLQKS---ASPDAAGKSGLTPLHVAAHYDNQKVALL--LLDQGASPHAAAKNGYTPLHI 620

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYA 410
           A +    D  + L+++GAD N +  QG   +H+A Q G+V + +L+    ANVN  NK  
Sbjct: 621 AAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSG 680

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            TPLH+A ++  ++    L+  GA VDA+T++G  PL++     N+ IV  LL+  A VN
Sbjct: 681 LTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVN 740

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
           +  + G T LH A +  +  I+  LL N A  N   ++G
Sbjct: 741 AKTKNGYTALHQAAQQGHTHIINVLLQNNASPNELTVNG 779

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  206 bits (523), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 175/560 (31%), Positives = 271/560 (48%), Gaps = 32/560 (5%)

Query: 5   VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRL 63
           VN T + G T    A       +A LL  RGA + D    +G + LH+A+ + N  +V+L
Sbjct: 226 VNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAV-DFTARNGITPLHVASKRGNTNMVKL 284

Query: 64  LLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART 123
           LL+    ++A    G T LH  A  ++     VE+L    A +  + K G +PLH+AA+ 
Sbjct: 285 LLDRGGQIDAKTRDGLTPLHCAA--RSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQG 342

Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAF 175
            + + V+ L+ H A  +        ALHVA          +LL K A+ N     G T  
Sbjct: 343 DHVECVKHLLQHKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPL 402

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEKGAN 234
            +A +      +EL +KYG +++       +   G   +H+    GH N V L+L+ GA+
Sbjct: 403 HIACKKNRIKVMELLVKYGASIQA------ITESGLTPIHVAAFMGHLNIVLLLLQNGAS 456

Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQLL 293
               +   +TAL +A   G +++V  LL +GA VD+  +   +PLH+A       IVQLL
Sbjct: 457 PDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
           L+   +     T G T   PLH  +  +     +   LL  GA  ++   +  TPLH+A 
Sbjct: 517 LQHMAHPDAATTNGYT---PLH--ISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAA 571

Query: 354 ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ--NGYVAIPNLIRHGANVNARNKYAK 411
           +    D   LL++  A  +     G  PLH+A    N  VA+  L+  GA+ +A  K   
Sbjct: 572 KYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALL-LLEKGASPHATAKNGY 630

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           TPLHIA ++  M   + LL +GA+ +  T+ G  PL++A +  +  +V  LL   AN++ 
Sbjct: 631 TPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHM 690

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
           S + G T LHLA +   V + + L  + AD +A    G    YTPL +A    N  ++N 
Sbjct: 691 STKSGLTSLHLAAQEDKVNVADILTKHGADQDAHTKLG----YTPLIVACHYGNVKMVNF 746

Query: 532 LLDYNPDLDVKDKNGNTALH 551
           LL    +++ K KNG T LH
Sbjct: 747 LLKQGANVNAKTKNGYTPLH 766

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  205 bits (522), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 174/560 (31%), Positives = 272/560 (48%), Gaps = 32/560 (5%)

Query: 5   VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRL 63
           VN T + G T    A       +A LL  RGA + D    +G + LH+A+ + N  +V+L
Sbjct: 226 VNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAV-DFTARNGITPLHVASKRGNTNMVKL 284

Query: 64  LLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART 123
           LL+    ++A    G T LH  A  ++     VE+L   +A +  + K G +PLH+AA+ 
Sbjct: 285 LLDRGGQIDAKTRDGLTPLHCAA--RSGHDQVVELLLERKAPLLARTKNGLSPLHMAAQG 342

Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAF 175
            + + V+ L+ + A  +        ALHVA          +LL K A+ N     G T  
Sbjct: 343 DHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPL 402

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEKGAN 234
            +A +      +EL +KYG +++       +   G   +H+    GH N V L+L+ GA+
Sbjct: 403 HIACKKNRIKVMELLVKYGASIQA------ITESGLTPIHVAAFMGHLNIVLLLLQNGAS 456

Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQLL 293
               +   +TAL +A   G +++V  LL +GA VD+  +   +PLH+A       IVQLL
Sbjct: 457 PDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
           L+   +     T G T   PLH  +  +     +   LL  GA  ++   +  TPLH+A 
Sbjct: 517 LQHMAHPDAATTNGYT---PLH--ISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAA 571

Query: 354 ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ--NGYVAIPNLIRHGANVNARNKYAK 411
           +    D   LL++  A  +     G  PLH+A    N  VA+  L+  GA+ +A  K   
Sbjct: 572 KYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALL-LLEKGASPHATAKNGY 630

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           TPLHIA ++  M   + LL +GA+ +  T+ G  PL++A +  +  +V  LL   AN++ 
Sbjct: 631 TPLHIAAKKNQMQIASTLLNYGAETNTVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHM 690

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
           S + G T LHLA +   V + + L  + AD +A    G    YTPL +A    N  ++N 
Sbjct: 691 STKSGLTSLHLAAQEDKVNVADILTKHGADRDAYTKLG----YTPLIVACHYGNVKMVNF 746

Query: 532 LLDYNPDLDVKDKNGNTALH 551
           LL    +++ K KNG T LH
Sbjct: 747 LLKQGANVNAKTKNGYTPLH 766

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 180/650 (27%), Positives = 277/650 (42%), Gaps = 109/650 (16%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN----DPFPD------------ 44
           + A+VNA +++G T    A   +   + K L E GAN N    D F              
Sbjct: 100 YGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENV 159

Query: 45  ---------DGK---SCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTR 91
                     GK     LHIAA   + R   +LL+ + + + +   G T LH  A  +  
Sbjct: 160 VAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENL 219

Query: 92  DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
           +    ++L    A+VN   + G TPLHIA+R GN  MVR+L+D GA  E K       LH
Sbjct: 220 N--VAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLH 277

Query: 152 VAV--------GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCH 203
            A          ILL  GA I  +   G +   MA +  +   + L L+Y   ++     
Sbjct: 278 CAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLD 337

Query: 204 ENVKHGGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLL 262
                     LH+  + GH    K++L+KGA  +++     T L IA +  H++++E LL
Sbjct: 338 HLTP------LHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLL 391

Query: 263 DHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRN------------------------ 297
             GA +D++ +   +PLH+A    H+ IV+ LL+R                         
Sbjct: 392 KTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 451

Query: 298 ------NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
                  N   +N K   ++ PLH     +  +T M K LL + AN N+      TPLHI
Sbjct: 452 VAKYLLQNKAKVNAKAKDDQTPLHCAA--RIGHTNMVKLLLENNANPNLATTAGHTPLHI 509

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYA 410
           A      + V  L++  A    +  +G  PLH+A + G V +  L+    A+ NA  K  
Sbjct: 510 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 569

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            TPLH+AV   N+  +  LL  G    +    G  PL+IA + + + +   LL++  + N
Sbjct: 570 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 629

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK------------------ 512
           +    G T LHLA +  +  ++  LL  +A+ N    SG+                    
Sbjct: 630 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 689

Query: 513 -----------GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                      GYTPLH+A    N  ++  LL +  D++ K K G + LH
Sbjct: 690 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 739

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  192 bits (488), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 181/650 (27%), Positives = 281/650 (43%), Gaps = 109/650 (16%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN----DPFPD------------ 44
           + A+VNA +++G T    A   +   + K L E GAN N    D F              
Sbjct: 96  YGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENV 155

Query: 45  ---------DGK---SCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTR 91
                     GK     LHIAA   + R   +LL+ + + + +   G T LH  A  +  
Sbjct: 156 VAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENL 215

Query: 92  DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
           +    ++L    A+VN   + G TPLHIA+R GN  MVR+L+D GA  E +       LH
Sbjct: 216 N--VAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLH 273

Query: 152 VAV--------GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCH 203
            A          ILL  GA I  +   G +   MA +  +   + L L+Y   ++     
Sbjct: 274 CAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLD 333

Query: 204 ENVKHGGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLL 262
                     LH+  + GH    K++L+KGA  +++     T L IA +  H++++E LL
Sbjct: 334 HLTP------LHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLL 387

Query: 263 DHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRR----NNNNININTK-------GPT- 309
             GA +D++ +   +PLH+A    H+ IV+ LL+R    N +N+ + T        G T 
Sbjct: 388 KTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 447

Query: 310 ------------------NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
                             ++ PLH     +  +T M K LL +GA+ N+      TPLH 
Sbjct: 448 VAKYLLQNKAKANAKAKDDQTPLHCAA--RIGHTGMVKLLLENGASPNLATTAGHTPLHT 505

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYA 410
           A      D    L++  A    +  +G  PLH+A + G V +  L+  H A+ NA  K  
Sbjct: 506 AAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNG 565

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            TPLH+AV   N+  +  LL  G    +    G  PL+IA + + + +   LL++  + N
Sbjct: 566 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSAN 625

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK------------------ 512
           +    G T LHLA +  +  ++  LL  +A+ N    SG+                    
Sbjct: 626 AESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVSQEGHVPVADVLIK 685

Query: 513 -----------GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                      GYTPLH+A    N  ++  LL +  D++ K K G + LH
Sbjct: 686 HGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 735

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 151/502 (30%), Positives = 244/502 (48%), Gaps = 51/502 (10%)

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           V +I  R+   V++    +  VN  ++E  TPLH AA  G+  ++ +LI  GA+   K+H
Sbjct: 13  VQAIFNRNADEVKLFLHKKDEVNALDQERRTPLHAAAWLGDVHIMDLLISAGANVNAKDH 72

Query: 145 QGYNALH--------VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY--G 194
                LH         AVG+LLRKGAD+   + + +T   +A   +    +E  L +   
Sbjct: 73  VWLTPLHRAAASRNERAVGLLLRKGADVTARDKYWQTPLHIAAANRATRCVETLLPHVSS 132

Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
           +N+         + G   L H  ++G+Q  VKL+L KGAN+ A D+  +  +  A   GH
Sbjct: 133 LNMAD-------RTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQPIHWAAYLGH 185

Query: 255 LKIVEFLLDHG---ACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNK 311
           L++V+ L+  G   +C D   +  +PLH A    H+ +V+ LLR   N   I+       
Sbjct: 186 LEVVKLLVSQGSDKSCKDKRGY--TPLHAAAASGHVDVVKYLLR---NGAEIDEPNAFGN 240

Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI-AIESQCWDAVSLLVKHGAD 370
             LH+     +    +   L+  GANVN  +    TPLH+ A+ +     + LLV +GAD
Sbjct: 241 TALHVACY--TGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGAD 298

Query: 371 VNVIDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
           VN+   +G+ PLH+A  +G +     LI++G  ++  ++Y  TPLH+A +  +   ++ L
Sbjct: 299 VNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTL 358

Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHN-------------LSIV-----EQLLKFKANVNS 471
           + +GA    +   G  PL++AV   +              SIV     E +L    ++N+
Sbjct: 359 MTNGADTARQGIHGMFPLHLAVLYGSSDCCRKLLSSGQLYSIVLSMSKEHVLSAGFDINT 418

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
            D FGRT LH A    N+  L  LL + AD+N K       G TPLH A  +     +  
Sbjct: 419 PDNFGRTCLHAAASGGNIECLNLLLSSGADMNKKDKF----GRTPLHYAAANGRYQCVVV 474

Query: 532 LLDYNPDLDVKDKNGNTALHPS 553
           L+    +++ +D++G T LH S
Sbjct: 475 LVGAGAEVNERDRSGCTPLHYS 496

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  185 bits (469), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 167/607 (27%), Positives = 274/607 (45%), Gaps = 89/607 (14%)

Query: 20   IVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGN 79
            ++  +  + +LL + GA++N    DD  SC+   A +    +R LL+    VN  D+ G 
Sbjct: 489  LIPKEQEVLQLLVKAGAHVNSE--DDRTSCIVRQALEREDSIRTLLDNGASVNQCDSNGR 546

Query: 80   TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT 139
            T+L   A   + D   V +L +  A++ I++  G TPL +AAR G+ K+V  LI  GA+ 
Sbjct: 547  TLLANAAYSGSLD--VVNLLVSRGADLEIEDAHGHTPLTLAARQGHTKVVNCLIGCGANI 604

Query: 140  ECKNHQGYNALHVAV--------------GI---------------------------LL 158
               +  G+ AL  A               G+                           LL
Sbjct: 605  NHTDQDGWTALRSAAWGGHTEVVSALLYAGVKVDCADADSRTALRAAAWGGHEDIVLNLL 664

Query: 159  RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL----LL 214
            + GA++N  +N G+TA   A  M +   +E  L +G  V     HE+V     L    L 
Sbjct: 665  QHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDHGAEVN----HEDVDGRTALSVAALC 720

Query: 215  HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQF 273
                 GH + V L++++GA V   D+   T L +A   GH+ +V+ LL+ GA VD +   
Sbjct: 721  VPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNN 780

Query: 274  IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
              +PL  A    H ++V  LL       +I+++G T      L +     N  + +TLL 
Sbjct: 781  GRTPLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTV-----LSIASAQGNVEVVRTLLD 835

Query: 334  HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-YVA 392
             G + N +DD   TPLH+A           L++ GA  N IDN G++P  +A Q G Y  
Sbjct: 836  RGLDENHRDDAGWTPLHMAAFEGHRLICEALIEQGARTNEIDNDGRIPFILASQEGHYDC 895

Query: 393  IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
            +  L+ + +N++ R    +  L +A  + +   +  L  HGA V+ +   G+  LYI   
Sbjct: 896  VQILLENKSNIDQRGYDGRNALRVAALEGHRDIVELLFSHGADVNCKDADGRPTLYILAL 955

Query: 453  MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA-------K 505
             + L++ E  L+  ANV +SD  GRT LH++    ++ +++ L+   AD+NA        
Sbjct: 956  ENQLTMAEYFLENGANVEASDAEGRTALHVSCWQGHMEMVQVLIAYHADVNAADNEKRSA 1015

Query: 506  IISGIWKGY----------------------TPLHLAVESNNEAVINKLLDYNPDLDVKD 543
            + S  W+G+                      T L +A +  +  V+  LL++  D +  D
Sbjct: 1016 LQSAAWQGHVKVVQLLIEHGAVVDHTCNQGATALCIAAQEGHIDVVQVLLEHGADPNHAD 1075

Query: 544  KNGNTAL 550
            + G TA+
Sbjct: 1076 QFGRTAM 1082

Homo sapiens (taxid: 9606)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 229/485 (47%), Gaps = 39/485 (8%)

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           V +I   DP  V  L   + +VN ++ E  TPLH AA  G+ +++ +LI  GA    K+ 
Sbjct: 13  VQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS 72

Query: 145 QGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF--LKYG 194
           +    LH AV         ILL+  AD+N  +   +T   +A   K     E    L   
Sbjct: 73  KWLTPLHRAVASCSEEAVQILLKHSADVNARDKNWQTPLHIAAANKAVKCAESLVPLLSN 132

Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
           VNV         + G   L H   +GH   VKL+L +GAN++A D+  + A+  A   GH
Sbjct: 133 VNVSD-------RAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGH 185

Query: 255 LKIVEFLLDHGA---CVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNK 311
           +++V+ L+ HGA   C D   +  +PLH A     I++V+ LL   +  +++N       
Sbjct: 186 IEVVKLLVSHGAEVTCKDKKSY--TPLHAAASSGMISVVKYLL---DLGVDMNEPNAYGN 240

Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ----CWDAVSLLVKH 367
            PLH+     +    +   L+  GANVN K+++  TPLH A  S     C   + LLV +
Sbjct: 241 TPLHVACY--NGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALC---LELLVGN 295

Query: 368 GADVNVIDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
           GADVN+    G+ PLH+   +G +     +I+ GA ++  +K   TPLHIA    +   +
Sbjct: 296 GADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLI 355

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           N L+  GA    R   G  PL++A          +LL    ++++ D FGRT LH A   
Sbjct: 356 NTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAG 415

Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNG 546
            N+  L  LL   AD N K       G +PLH A  + N   +  L+     ++  D+ G
Sbjct: 416 GNLECLNLLLNTGADFNKK----DKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERG 471

Query: 547 NTALH 551
            T LH
Sbjct: 472 CTPLH 476

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
123507472	1489	ankyrin repeat protein [Trichomonas vagi	0.962	0.357	0.328	2e-71
123404687	932	ankyrin repeat protein [Trichomonas vagi	0.960	0.569	0.327	2e-69
123444605	1247	ankyrin repeat protein [Trichomonas vagi	0.960	0.425	0.326	2e-67
189502738	1585	hypothetical protein Aasi_1435 [Candidat	0.960	0.335	0.330	7e-66
154419666	1038	ankyrin repeat protein [Trichomonas vagi	0.960	0.511	0.320	1e-65
154415531	922	ankyrin repeat protein [Trichomonas vagi	0.958	0.574	0.319	9e-64
123437955	948	ankyrin repeat protein [Trichomonas vagi	0.958	0.559	0.307	3e-63
123506042	1174	ankyrin repeat protein [Trichomonas vagi	0.969	0.456	0.320	8e-63
154419616	576	ankyrin repeat protein [Trichomonas vagi	0.965	0.927	0.327	3e-62
119720190	870	ankyrin [Thermofilum pendens Hrk 5] gi|1	0.956	0.608	0.321	1e-61

>gi|123507472|ref|XP_001329422.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121912377|gb|EAY17199.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 293/560 (52%), Gaps = 28/560 (5%)

Query: 3    ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
            A++N  NK G T+   A  +++    +LL   GANIN+   ++G + L IAA  N +  V
Sbjct: 643  ANINEKNKNGTTVLHYAASNNRKETVELLISHGANINEK-DNNGATALRIAARSNSKETV 701

Query: 62   RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             LL+ +  ++N  D  G TVLH  AS   ++  A  +L ++ AN+N K+ +G T LH AA
Sbjct: 702  ELLISHGANINEKDKYGTTVLHYAASNNRKETVA--LLISHGANINEKDNDGQTALHYAA 759

Query: 122  RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
               + + V +LI HGA+   K++ G  ALH A        V +L+  GA+IN ++N G+T
Sbjct: 760  ENNSKETVELLISHGANINEKDNDGQTALHYAAENNSKETVELLISHGANINEKDNDGQT 819

Query: 174  AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
            A   A    +   +EL + +G N+     +E  K+G  +L +   N  +  V+L++  GA
Sbjct: 820  ALHYAARANSKETVELLISHGANI-----NEKDKNGATVLHYAASNNRKETVELLISHGA 874

Query: 234  NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
            N++ KD+   T L  A      + VE L+ HGA ++   ++  + L +A E      V+L
Sbjct: 875  NINEKDKNGATVLHYAARSNRKETVELLISHGANINEKDKYGATALRIAAENNSKETVEL 934

Query: 293  LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
            L+       NIN K    +  LH   +     T     L+ HGAN+N KD++ +T LH A
Sbjct: 935  LISHG---ANINEKDEYGQTALHYAARSNRKETVEL--LISHGANINEKDNDGQTVLHYA 989

Query: 353  IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN-GYVAIPNLIRHGANVNARNKYAK 411
               +  +    L+ HGA++N  DN GQ  LH A +N     +  LI HGAN+N +++Y +
Sbjct: 990  TRFKSKETAEFLISHGANINEKDNDGQTALHYAAENNSKETVELLISHGANINEKDEYGQ 1049

Query: 412  TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
            T LH A E  +   +  L+ HGA ++ + + G+  L  A   ++   VE L+   AN+N 
Sbjct: 1050 TVLHYAAENNSKETVELLISHGANINEKDEYGQTVLPYAARSNSKETVELLISHGANINE 1109

Query: 472  SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             D  G+T LH A +  +   +E L+ + A+IN K  +G     T L +A  SN++  I  
Sbjct: 1110 KDNNGQTALHYAARSNSKEYIEFLISHGANINEKDNNGA----TALRIAARSNSKEYIEF 1165

Query: 532  LLDYNPDLDVKDKNGNTALH 551
            L+ +  +++ KDK G TALH
Sbjct: 1166 LISHGANINEKDKYGTTALH 1185

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|123404687|ref|XP_001302477.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121883769|gb|EAX89547.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 291/561 (51%), Gaps = 30/561 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
           A++N  +  G T    A   + T  A++L   G NIN+      K+ LH AA  N +   
Sbjct: 336 ANINEKDNNGQTALHTAAEHNSTETAEVLISHGININEK-DKKRKTALHFAAKNNNKETA 394

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            +L+ +  ++N  DN G T LHT A   + +    E+L ++  N+N K+K+  T LHIAA
Sbjct: 395 EVLISHGANINEKDNNGQTALHTAAEHNSTET--AEVLISHGININEKDKKRKTALHIAA 452

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKT 173
           +    +   VLI HGA+   K+  GY ALH+A          +L+  GA+IN ++N G+T
Sbjct: 453 QYNKKETAEVLISHGANINEKDDDGYTALHIAAEHNSTETAEVLISHGANINEKDNNGQT 512

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKG 232
           A  +A E  +    E+ + +G N+ +        + GQ  LH+   +      ++++  G
Sbjct: 513 ALHIAAEHNSTETAEVLISHGANINE------KDNNGQTALHIAAEHNSTETAEVLISHG 566

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQ 291
            N++ KD+  KTAL IAVE+   +I + L+ HGA ++   ++  + LH+A+E     I +
Sbjct: 567 ININEKDKKRKTALHIAVENNCKEITDILISHGANINEKDKYEETALHIAVENNSEEIAE 626

Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
           LL+   ++  NIN K    K  LH   +     T   + L+ HGAN+N KD   +T LHI
Sbjct: 627 LLI---SHGANINEKNKHGKTALHFASEYNRKETA--EVLISHGANINEKDKYGRTALHI 681

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
           A      +   +L+ HGA++N  DN G   LHIA ++  + I   LI HGAN+N +NK+ 
Sbjct: 682 AAWYNSKETAEVLISHGANINEKDNNGDTALHIAAEDYSIEIAKVLISHGANINEKNKHG 741

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           +T LH A E         L+ HGA ++ + + G+  L+ A E +     E L+   AN+N
Sbjct: 742 QTALHFASEYNRKETAEVLISHGANINEKNKHGQTALHFASEYNRKETAEVLISHGANIN 801

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
             D++GRT LH+A    +    E L+ + A+IN K  +    G T LH+A E N+     
Sbjct: 802 EKDKYGRTALHIASDYNSKRAAERLISHGANINEKDNN----GQTALHIAAEHNSTETAE 857

Query: 531 KLLDYNPDLDVKDKNGNTALH 551
            L+ +  +++ KDK   TALH
Sbjct: 858 VLISHGININEKDKKRKTALH 878

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|123444605|ref|XP_001311071.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121892867|gb|EAX98141.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 283/561 (50%), Gaps = 30/561 (5%)

Query: 3    ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
            A++N     G T    A+ ++    A+ L   GANIN+   ++GK+ LH AA K+ +  V
Sbjct: 694  ANINEKGNNGQTALHIAVKNNYIETAEFLISHGANINEK-DNNGKTALHYAAWKDSKETV 752

Query: 62   RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
              L+ +  ++N  D  G T LH  A+ K    TA E+L ++ AN+N K++ G T LHIAA
Sbjct: 753  EFLISHGANINEKDVYGKTALH-YAAWKDSKETA-EVLISHGANINEKDEYGQTALHIAA 810

Query: 122  RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKT 173
            +T +      LI HGA+   K++ G  A+H+A           L+  GA+IN ++N G+T
Sbjct: 811  KTYSKATAEFLISHGANINEKDNNGQTAIHIAAENNSKATAEFLISHGANINEKDNNGQT 870

Query: 174  AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKG 232
            A  +A E  +    E  + +G N+ +        + GQ  +H+   N  +   + ++  G
Sbjct: 871  ALHIAAENNSKATAEFLISHGANINE------KDNNGQTAIHIAAENNRKETAEFLISHG 924

Query: 233  ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQ 291
            AN++ KD L +TA+ IA E+   +  EFL+ HGA ++       + +H+A E       +
Sbjct: 925  ANINEKDILGETAIHIAAENNSKETAEFLISHGANINEKDNNGQTAIHIAAENNRKETAE 984

Query: 292  LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
             L+       NIN K    K  LH    + S  T  F  L+ HGAN+N KD   KT LH 
Sbjct: 985  FLISHG---ANINEKDNNGKTALHYAAWKDSKETVEF--LISHGANINEKDVYGKTALHY 1039

Query: 352  AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
            A      +   +L+ HGA++N  D  GQ  LH A  N    I   LI HGAN+N +++Y 
Sbjct: 1040 AAWKDSKETAEVLISHGANINEKDEYGQTALHNAANNYSTEIAEVLISHGANINEKDEYG 1099

Query: 411  KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            +T LH A    +     +L+ HGA ++ +   G+  L+ A + +     E L+   AN+N
Sbjct: 1100 QTALHNAANNYSTEIAEFLISHGANINEKDNNGQTALHYAAKNNRNETAEFLISHGANIN 1159

Query: 471  SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
              D  G+T LH A K       E L+ + A+IN K  +    G T LH A E+N    + 
Sbjct: 1160 EKDNNGQTALHYAAKNNRNETAEFLISHGANINEKDNN----GQTALHYAAENNRNETVE 1215

Query: 531  KLLDYNPDLDVKDKNGNTALH 551
             L+ +  +++ KDK+G TALH
Sbjct: 1216 LLISHGANINEKDKDGKTALH 1236

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|189502738|ref|YP_001958455.1| hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] gi|189498179|gb|ACE06726.1| hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 301/559 (53%), Gaps = 28/559 (5%)

Query: 3    ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            AD+NA NK G T   +A  +    + K L ++GA+IN    +D  + LH A   N +++V
Sbjct: 1023 ADINAKNKYGNTTLHKACENGHLEVVKYLLDKGADINVK-NNDQWTALHFATRYNHLKIV 1081

Query: 62   RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            +LLL+   D+NA +  GNT LH   + +      V++L    A++N+KN +  T LH A 
Sbjct: 1082 KLLLDKGADINAKNKEGNTTLHK--ACENDHLEIVKLLLDKGADINVKNNDQWTALHFAT 1139

Query: 122  RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
            R  + ++V+ L+D GA    KN+  + ALH A        V  LL KGADINV++N   T
Sbjct: 1140 RYNHLEIVKYLLDKGADINVKNNDQWTALHFATRYDHLKIVKYLLDKGADINVKDNDQWT 1199

Query: 174  AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
            A   A    +   ++L L+ G ++     H   K    LL++  + G    VK +L+KGA
Sbjct: 1200 ALHFATRYDHLKIVKLLLEKGADI-----HAKNKESETLLIYACKKGDLELVKYLLDKGA 1254

Query: 234  NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
            +++ K+    TAL     + HL+IV++LLD GA +++  ++ ++ LH A E  H+ IV+L
Sbjct: 1255 DINVKNNDQWTALHFVTRYNHLEIVKYLLDKGADINAKNKYGNTTLHKACENDHLEIVKL 1314

Query: 293  LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
            LL +     +IN K       LH   +    +  + K LL  GA++NVK+++    LH A
Sbjct: 1315 LLDKG---ADINVKNNDQWTALHFATRYN--HLEIVKYLLDKGADINVKNNDQWIALHFA 1369

Query: 353  IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAK 411
                  + V  L+  GAD+NV +N   + LH A +  ++ I  L+   GA++N +N    
Sbjct: 1370 TRYNHLEIVKYLLDKGADINVKNNDQWIALHFATRYNHLKIVKLLLDKGADINVKNNDQW 1429

Query: 412  TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
            T LH A    ++  + YLL+ GA ++ + +     L+ A   ++L IV+ LL   A++++
Sbjct: 1430 TALHFATRYDHLEIVKYLLDKGADINVKNKNQWTALHFATRYNHLKIVKLLLDKGADIHA 1489

Query: 472  SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +++G T LH A +  ++ +++ L+   ADINAK  +G     TPLH A E+ +  V+  
Sbjct: 1490 KNKYGNTPLHKACENGHLEVIKYLVEKGADINAKNKNG----NTPLHKACENGHLEVVKY 1545

Query: 532  LLDYNPDLDVKDKNGNTAL 550
            LLD   D+  K+KNGNT +
Sbjct: 1546 LLDKGADIQAKNKNGNTPI 1564

Source: Candidatus Amoebophilus asiaticus 5a2

Species: Candidatus Amoebophilus asiaticus

Genus: Candidatus Amoebophilus

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|154419666|ref|XP_001582849.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121917087|gb|EAY21863.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 275/561 (49%), Gaps = 30/561 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
           A++N  +K G T    A + +    A+LL   GANIN+   ++GK+ LH AA  N +   
Sbjct: 336 ANINEKDKHGKTALHYAAIKNSKETAELLISHGANINEK-DNNGKTALHFAAKYNSKETA 394

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            LL+ + V+++   N G T LH  A   + +    E L  +  N+N K++ G T LH AA
Sbjct: 395 ELLISHGVNIDEKYNYGETALHIAAEHNSTET--AEFLILHGININEKDEYGQTALHFAA 452

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKT 173
              + +   +LI HGA+   K   G  ALH A          +L+  GA+IN ++N G+T
Sbjct: 453 IKNSKETAELLISHGANINEKGEYGKTALHFAAESNRKETAEVLISHGANINEKDNDGQT 512

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEKG 232
           A   A E  +    E  + +G+NV +      + + GQ  LH    N  +   +L++  G
Sbjct: 513 ALHFAAEYNSTETAEFLISHGINVNE------IDYDGQTALHAAAINNSKETAELLISHG 566

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQ 291
            N++ KD   +TAL I V     +  E L+ HGA +D    +  + LH A +       +
Sbjct: 567 ININEKDNDGQTALHIVVIKNSTETAELLISHGANIDEKYNYGEAALHFAAKYNRKETAE 626

Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
           +L+       NIN K    +  LH   +     T  F  L+ H AN+N KD++ +T LH 
Sbjct: 627 VLISHG---ANINEKDNDGQTALHFAAKYNRKKTAEF--LILHSANINEKDNDGQTALHF 681

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGANVNARNKYA 410
           A +    +   LL+ HGA++N  DN GQ  LH A + N       LI HGAN+N ++   
Sbjct: 682 AAKYNSKETAELLILHGANINEKDNDGQTALHFAAKYNRKETAEFLILHGANINEKDNDG 741

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
            T LHIAVE       + L+ HGA +D +   G+  L+ A + +     E L+   AN+N
Sbjct: 742 NTALHIAVENNLKEKADLLISHGANIDEKYNYGEAALHFAAKYNRKETAEVLISHGANIN 801

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
             D  G+T LH A K  +    E L+++ A+IN K       G T LH A + N +    
Sbjct: 802 EKDNDGQTALHFAAKYNSTETAEFLILHSANINEKDND----GQTALHFAAKYNRKETAE 857

Query: 531 KLLDYNPDLDVKDKNGNTALH 551
            L+ +  +++ KD +GNTALH
Sbjct: 858 FLILHGANINEKDNDGNTALH 878

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|154415531|ref|XP_001580790.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121915011|gb|EAY19804.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 280/560 (50%), Gaps = 30/560 (5%)

Query: 4   DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI--RLV 61
           ++N  + EG T    +       +A+LL   GANIN+   ++GK+  H A  KN      
Sbjct: 242 NINEKDNEGKTFLHYSAAFYNAEVAELLISHGANINEK-DNNGKTVFHYA-VKNFSPETA 299

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            LL+ +  ++N  DN G T L+   +I +   T VE+L +   N+N K+ +G   LH AA
Sbjct: 300 ELLISHGANINEKDNDGKTSLYY--AIDSNSETTVELLISLGININEKDNDGQISLHYAA 357

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKT 173
                ++  +LI HGA+   ++  G  ALH+A          +L+  GA+IN ++N GKT
Sbjct: 358 EANRIEIAEILISHGANINERDINGQTALHIAAYNDRKKMCKLLISHGANINEKDNHGKT 417

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
           A   A +       EL + +G+N+     +E   +G   L +     ++   +L++  GA
Sbjct: 418 ALHYATKNNRKEMAELLISHGINI-----NEKDNNGKTALHYATTENYKEICELLISHGA 472

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEKQHIAIVQL 292
           N++  D+  + AL IA  +G+ +I E L+ HGA ++    +  + LHLA +     I +L
Sbjct: 473 NINESDKYGRNALHIAAANGNKEICELLISHGANINEKSKVGLTALHLASKNDSKEIREL 532

Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
           L+        IN K    K  LH  +  K         L+ HGAN+N KD   KT LH A
Sbjct: 533 LISHG---AKINEKNEDGKTALHYAIDNKRKEAAEL--LISHGANINEKDKNGKTSLHYA 587

Query: 353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
            E+   +   LL+ HGA++N  DN G+  L  A +N  + I   LI HGAN+N ++   K
Sbjct: 588 AENNRKEIAELLISHGANINEKDNNGRTALIHAAKNSNIKICEILISHGANINEKDNNGK 647

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           T LH A ++        L+ HGA ++   + G++ L+IA    N  I E L+   AN+N 
Sbjct: 648 TALHCATKKNYKEICELLISHGANINESDKYGRNALHIAAANGNKEICELLISHGANINE 707

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             + G T LHLA K  +  I E L+ + A IN K       G T LH A+++  +     
Sbjct: 708 KSKVGLTALHLASKNDSKEIRELLISHGAKINEKN----EDGKTALHYAIDNKRKEAAEL 763

Query: 532 LLDYNPDLDVKDKNGNTALH 551
           L+ +  +++ KDKNG T+LH
Sbjct: 764 LISHGANINEKDKNGKTSLH 783

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|123437955|ref|XP_001309767.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121891508|gb|EAX96837.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 173/562 (30%), Positives = 283/562 (50%), Gaps = 32/562 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
           AD+NA +++G T    A  ++    A++L   GA+IN    ++  + LH AA  N +   
Sbjct: 373 ADINAKDEDGSTPLHYAASNNSKETAEILISNGADINAKDKNEW-TPLHCAARYNSKETA 431

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            +L+    D+NA +  G+T LH  A   +++    EIL +N A++N KN++G TPLH AA
Sbjct: 432 EILISNGADINAKNEDGSTPLHYAARYNSKE--TAEILISNGADINAKNEDGSTPLHYAA 489

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKT 173
           R  + ++  +LI +GA    K H G+  LH A          IL+  GADIN +N  G T
Sbjct: 490 RDNSKEIAEILISNGADINAKEHGGWTPLHWAARYKSKEIAEILISNGADINAKNKDGST 549

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKH--GGQLLLHLVRNGHQNAVKLILEK 231
               A    +    E+ +  G ++       N K+  G   L +  R+  +   ++++  
Sbjct: 550 PLHYAARYNSKETAEILISNGADI-------NAKNEDGSTPLHYAARDNSKETAEILISN 602

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIV 290
           GA+++AKD+   T L  A  +   +  E L+ +GA +++ +    +PLH A         
Sbjct: 603 GADINAKDKNEWTPLHCAAMNNSKETAEILISNGADINAKEHGGWTPLHWAARYNSKETA 662

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
           ++L+   +N  +IN K      PLH      +  TT  + L+ +GA++N KD    TPLH
Sbjct: 663 EILI---SNGADINAKDKDGWTPLHYATSNNNKETT--EILISNGADINAKDKNEWTPLH 717

Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
            A  +   +   +L+ +GAD+N  D  G  PLH A  N        LI +GA++NA++K 
Sbjct: 718 YAAMNNSKETAEILISNGADINAKDEDGSTPLHYAASNNSKETAEILISNGADINAKDKN 777

Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
             TPLH A    +      L+ +GA ++A+ + G  PL+ A   ++  I E L+   A++
Sbjct: 778 EWTPLHCAARYNSKETAEILISNGADINAKNEDGSTPLHYAARDNSKEIAEILISNGADI 837

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           N+ +  G T LH A +  +  I E L+ N ADINAK       G+TPLH A    ++   
Sbjct: 838 NAKEHGGWTPLHYAARDNSKEIAEILISNGADINAKEHG----GWTPLHWAARYKSKETA 893

Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
             L+    D++ K+K+G+T L+
Sbjct: 894 EILISNGADINAKNKDGSTPLY 915

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|123506042|ref|XP_001329113.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121912064|gb|EAY16890.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 189/589 (32%), Positives = 298/589 (50%), Gaps = 53/589 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
           A+VNA +++  T  Q A  S+    A++L   GANIN    D+G + LH AA  N +   
Sbjct: 406 ANVNAKDEDNETPLQNAAYSNSKETAEILISHGANINAKDKDNG-TPLHNAAYSNSKETA 464

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            +L+ +  +VNA D    T LH  A   +++    EIL ++ ANVN K+++ +TPL  AA
Sbjct: 465 EILISHGANVNAKDEDNETPLHKAAYSNSKE--TAEILISHGANVNAKDEDNETPLQNAA 522

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
            + + +   +LI HGA+   K+      LH A          IL+  GA++N ++   +T
Sbjct: 523 YSNSKETAEILISHGANINAKDKDNETPLHKAAYSNSKETAEILISHGANVNAKDEDNET 582

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVE------QCVCH----ENVK--------HG------ 209
             Q A    +    E+ + +G N+       Q   H    +N K        HG      
Sbjct: 583 PLQNAAYSNSKETAEILISHGANINAKDKDGQTPLHITALKNSKETAEILISHGANINAK 642

Query: 210 ---GQLLLHL--VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
              GQ  LH+  ++N  + A ++++  GANV+AKD+  +T L  A      +  EFL+ H
Sbjct: 643 DKDGQTPLHITALKNSKETA-EILISHGANVNAKDEDNETPLHKAAYSNSKETAEFLISH 701

Query: 265 GACVDSLQFIH-SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           GA V++    + +PLH A         ++L+       NIN K    + PLH+   + S 
Sbjct: 702 GANVNAKDKDNGTPLHNAAYSNSKETAEILISH---GANINAKDKDGQTPLHITALKNSK 758

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
            T   + L+ HGANVN KD++N+TPLH A  S   +   +L+ HGA++N  D  GQ PLH
Sbjct: 759 ETA--EILISHGANVNAKDEDNETPLHNAAYSNSKETAEILISHGANINAKDKDGQTPLH 816

Query: 384 I-AVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
           I A++N       LI HGANVNA+++  +TPL  A    +      L+ HGA ++A+ + 
Sbjct: 817 ITALKNSKETAEILISHGANVNAKDEDNETPLQNAAYSNSKETAEILISHGANINAKDKD 876

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G+ PL+I    ++    E L+   AN+N+ D+ G+T LH+     +    E L+ + A++
Sbjct: 877 GQTPLHITALKNSKETAEILISHGANINAKDKDGQTPLHITALKNSKETAEILISHGANV 936

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           NAK         TPL  A  SN++     L+ +  +++ KDK+G T LH
Sbjct: 937 NAK----DEDNETPLQNAAYSNSKETAEILISHGANINAKDKDGQTPLH 981

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|154419616|ref|XP_001582824.1| ankyrin repeat protein [Trichomonas vaginalis G3] gi|121917062|gb|EAY21838.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 275/562 (48%), Gaps = 28/562 (4%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR- 59
           + A+++  + +G T    A +++     ++L   GANIN    + G++ LHIAA  N + 
Sbjct: 8   YGANIDEKDNDGETALHFAAINNSKETVEILISHGANIN-AKDEVGQTALHIAAINNSKE 66

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
              +L+ Y  ++N  DN G T LH  A  K       EIL ++ AN+N KN  G T LH 
Sbjct: 67  TAEVLISYGANINEKDNNGRTALHCAA--KNNSKETAEILISHGANINEKNNNGRTALHC 124

Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFG 171
           AA+  + +   +LI HGA+   K++    ALH A          IL+  GA++N ++  G
Sbjct: 125 AAKNNSKETAEILISHGANINEKDNNRRTALHHAAENNSTETAEILISHGANVNEKDEDG 184

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
           +TA   A    N    EL + +G N+     +E  K G  +L +   N ++   + ++  
Sbjct: 185 ETALHCALLNDNKEIAELIISHGANI-----NEKDKDGETILHYASYNNNKEIAEFLISH 239

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEKQHIAIV 290
           GANV+ KD+  KTAL  A  +   +  E L+ HGA +D       + LH A+        
Sbjct: 240 GANVNEKDEDGKTALHFAASNNSTETAEILITHGANIDEKDNNGVTALHNAVLNNSKKTT 299

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
           +LL+    N  NIN K   +   LH      +     F  L+ HGANVN K +   T LH
Sbjct: 300 ELLIS---NGANINEKNKDSITALHFASYNNNKEIAEF--LISHGANVNEKRNNGITALH 354

Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV-QNGYVAIPNLIRHGANVNARNKY 409
            A E+   +   +L+ HGA++N  D  G+  LH A   N       LI HGAN+N ++K 
Sbjct: 355 CAAENDSKETAEILITHGANINEKDEDGKTALHRAAWYNSKETAEILISHGANINEKDKD 414

Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
            +T LH A    N     +L+ HGA V+ +   G   L+ A E  +   VE L+   ANV
Sbjct: 415 GETILHYASYNNNKEIAEFLISHGANVNEKRNNGITALHCAAENDSKETVEILISHDANV 474

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           N  D+ G T LH A+   N  I E L+ + A++NAK       G T LH A  +N+    
Sbjct: 475 NEKDEDGETALHCALLNDNKEIAEFLISHGANVNAK----DDDGKTALHFAASNNSTETA 530

Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
             L+ ++ ++D KD NG TALH
Sbjct: 531 EILISHDANIDEKDNNGVTALH 552

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|119720190|ref|YP_920685.1| ankyrin [Thermofilum pendens Hrk 5] gi|119525310|gb|ABL78682.1| Ankyrin [Thermofilum pendens Hrk 5]

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 194/604 (32%), Positives = 282/604 (46%), Gaps = 75/604 (12%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
           AD NAT++EG T    A +     IA+LL +RGA++N      GK+ LH AA + +  + 
Sbjct: 113 ADPNATDEEGNTPLHLAALLGFADIARLLLDRGADVNAK-NSSGKTPLHYAAEQGSAEVA 171

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           +LLLE   D  A D  GNT LH    +  R     ++L    A+VN +N EG TPLH AA
Sbjct: 172 KLLLERGADPGATDTYGNTPLH----LAVRSIEVSKLLLERGADVNARNNEGRTPLHRAA 227

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------VGILLRKGADINVENNFGKTAF 175
             G+ ++V+ L++ GA     +  G   LH+A        +LL KGAD N +N+ G T  
Sbjct: 228 MEGSAEVVKFLLERGADPCAVDAFGNTPLHLAFKNMEVAKLLLEKGADPNAKNSSGMTPL 287

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQ-----CVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
             A  +     +EL L++G +V+              H   + +          V L+LE
Sbjct: 288 HFAAGLGKVEVVELLLEHGADVDAKDNDGLTPLAYAAHRQDMYIRADALTALKVVGLLLE 347

Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAI 289
           +GA+         T L  A    + K+V  LL+ G   ++  ++  +PLH A E+    +
Sbjct: 348 RGADPSLIGSDSYTLLHKAAFWCYAKVVRLLLEKGLDANAKDEYGRTPLHWAAERGCPEV 407

Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
           V+LLL    +  + N +  +   PLHL    K  +T   K LL HGA+ N ++    TPL
Sbjct: 408 VELLL---EHGADPNARNDSGMTPLHLAATVK--DTEAAKLLLEHGADPNAEEYGGSTPL 462

Query: 350 HIAIESQCWDA---------------VSLLVKHGAD------------------------ 370
            I     C+D                + LL++HGA+                        
Sbjct: 463 AIISSFFCYDDNITDWLTGEHKALEFIRLLLEHGAEPGNGLHAAVRCGRPECVKKLLEWG 522

Query: 371 --VNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALN 427
              N  DN G   LH A  NG V  I  L+  GA++NARNK+ +TPLH+A E+ N  A+ 
Sbjct: 523 VNPNTRDNDGNTLLHAAAWNGDVEVIEILLERGADINARNKFGETPLHVAAERGNFEAVK 582

Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
            LLE GA+V+A      D L  A       +   LL+  A++N+ D F RT LH A   +
Sbjct: 583 LLLERGAEVNA------DALCYAARSCRWDVFTLLLERGADINARDWFDRTPLHGAAGCR 636

Query: 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
           +  I   L+   ADINA+       G TPLH A  S N   +  LL++  D+D ++  G 
Sbjct: 637 DAGIARFLIERGADINARTKD----GETPLHKATSSGNVEAVRLLLEHGADVDARNDFGG 692

Query: 548 TALH 551
           T LH
Sbjct: 693 TPLH 696

Source: Thermofilum pendens Hrk 5

Species: Thermofilum pendens

Genus: Thermofilum

Family: Thermofilaceae

Order: Thermoproteales

Class: Thermoprotei

Phylum: Crenarchaeota

Superkingdom: Archaea

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.958	0.275	0.310	6.2e-54
FB|FBgn0011747	1549	Ank "Ankyrin" [Drosophila mela	0.958	0.342	0.298	6.8e-54
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.960	0.270	0.303	1e-53
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.891	0.266	0.306	2e-53
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.891	0.276	0.306	2.4e-53
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.951	0.309	0.301	2.8e-53
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.951	0.302	0.301	2.9e-53
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.951	0.288	0.301	3.1e-53
UNIPROTKB|K7GSS3	2594	ANK3 "Uncharacterized protein"	0.891	0.190	0.306	3.3e-53
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.951	0.274	0.301	3.4e-53

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 572 (206.4 bits), Expect = 6.2e-54, P = 6.2e-54
 Identities = 175/564 (31%), Positives = 271/564 (48%)

Query:     2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRL 60
             D + +  +K G T    A       +A+LL  RGAN+N   P +G + LHIA+ + N+ +
Sbjct:   229 DPNPDVLSKTGFTPLHIAAHYENLSVAQLLLNRGANVNFT-PKNGITPLHIASRRGNVIM 287

Query:    61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
             VRLLL+    ++A      T LH  A  +      VEIL    A +  K K G +P+H+A
Sbjct:   288 VRLLLDRGAQIDAKTKDELTPLHCAA--RNGHVRVVEILLDQGAPLQAKTKNGLSPIHMA 345

Query:   121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
             A+  +   VR L+ + A  +         LHVA        V +LL KGA  N     G 
Sbjct:   346 AQGDHMDCVRQLLQYNAEIDDITLDHLTPLHVAAHCGHHRMVKVLLDKGAKANARALNGF 405

Query:   173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEK 231
             T   +A +  +  +++L LK+  ++E       V   G   LH+    GH N VK +L++
Sbjct:   406 TPLHIACKKNHMRSMDLLLKHSASLEA------VTESGLTPLHVAAFMGHLNIVKSLLQR 459

Query:   232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIV 290
             GA+ +A +   +T L +A   GH ++ +FLL + A VD+  +   +PLH A    H  +V
Sbjct:   460 GASPNASNVKVETPLHMAARAGHCEVAQFLLQNNAQVDAKAKDDQTPLHCAARMGHKELV 519

Query:   291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
             +             T G T   PLH+  +     TT  + LL   A       +  TPLH
Sbjct:   520 KLLMEHKANPDSATTAGHT---PLHIAAREGHAQTT--RILLDENAQQTKMTKKGFTPLH 574

Query:   351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGANVN--ARN 407
             +A +    D V LL++ GA+ N     G  PLH+AV  N    +  L+  G + +  ARN
Sbjct:   575 VACKYGKVDVVELLLERGANPNAAGKNGLTPLHVAVHHNNLDVVKLLVSKGGSPHSTARN 634

Query:   408 KYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467
              Y  T LHIA +Q  +   + LL++GA  ++ +  G  PL++A +     +V  L+  +A
Sbjct:   635 GY--TALHIAAKQNQLEVASSLLQYGANANSESLQGITPLHLASQEGQPDMVALLISKQA 692

Query:   468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
             NVN  ++ G T LHL  +  +V I + +LV +    A + +    GYTPLH+A    N  
Sbjct:   693 NVNLGNKNGLTPLHLVAQEGHVGIAD-MLVKQG---ASVYAASRMGYTPLHVACHYGNIK 748

Query:   528 VINKLLDYNPDLDVKDKNGNTALH 551
             ++  LL     ++ K + G T LH
Sbjct:   749 MVKFLLQQQAHVNSKTRLGYTPLH 772

GO:0007165 "signal transduction" evidence=IEA

FB|FBgn0011747 Ank "Ankyrin" [Drosophila melanogaster (taxid:7227)]

 Score = 570 (205.7 bits), Expect = 6.8e-54, P = 6.8e-54
 Identities = 167/560 (29%), Positives = 278/560 (49%)

Query:     3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
             ADVN   K  IT    A    +  +  LL  RGA I D    DG + LH A+   ++ ++
Sbjct:   258 ADVNYVAKHNITPLHVACKWGKLSLCTLLLCRGAKI-DAATRDGLTPLHCASRSGHVEVI 316

Query:    62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             + LL+ N  +      G + LH  A  +     A  +L  N+A V+    +  T LH+AA
Sbjct:   317 KHLLQQNAPILTKTKNGLSALHMAA--QGEHDEAAHLLLDNKAPVDEVTVDYLTALHVAA 374

Query:   122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
               G+ K+ ++L+D+ A+   +   G+  LH+A        V +L++ GA+I      G T
Sbjct:   375 HCGHVKVAKLLLDYKANPNARALNGFTPLHIACKKNRIKMVELLIKHGANIGATTESGLT 434

Query:   174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
                +A  M     +   L++  + +       ++  G+  LHL    +Q  +  IL + A
Sbjct:   435 PLHVASFMGCINIVIYLLQHEASADL----PTIR--GETPLHLAARANQADIIRILLRSA 488

Query:   234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQX 292
              V A  +  +T L +A   G++ I+  LL HGA +++     +S LH+A ++    IVQ 
Sbjct:   489 KVDAIAREGQTPLHVASRLGNINIIMLLLQHGAEINAQSNDKYSALHIAAKEGQENIVQV 548

Query:   293 XXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                          KG T   PLHL  +    N      LL +GA+++ +   + TPLH+A
Sbjct:   549 LLENGAENNAVTKKGFT---PLHLACKYGKQNVVQI--LLQNGASIDFQGKNDVTPLHVA 603

Query:   353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAK 411
                     V LL+K+G+  N+    GQ  +HIA +  Y+ I   L++HGA+VN  +K   
Sbjct:   604 THYNNPSIVELLLKNGSSPNLCARNGQCAIHIACKKNYLEIAMQLLQHGADVNIISKSGF 663

Query:   412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             +PLH+A +  N+  +  LLE+G  + A  + G  PL++A +  ++ + + LL+  AN++ 
Sbjct:   664 SPLHLAAQGGNVDMVQLLLEYGV-ISAAAKNGLTPLHVAAQEGHVLVSQILLEHGANISE 722

Query:   472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
               + G T LH+A    ++ +++  + N ADI  ++ S I  GYTPLH A +  +  +IN 
Sbjct:   723 RTRNGYTPLHMAAHYGHLDLVKFFIENDADI--EMSSNI--GYTPLHQAAQQGHIMIINL 778

Query:   532 LLDYNPDLDVKDKNGNTALH 551
             LL +  + +   K+GNTALH
Sbjct:   779 LLRHKANPNALTKDGNTALH 798

GO:0045170 "spectrosome" evidence=IDA;TAS

GO:0045169 "fusome" evidence=NAS;IDA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 570 (205.7 bits), Expect = 1.0e-53, P = 1.0e-53
 Identities = 171/563 (30%), Positives = 273/563 (48%)

Query:     2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRL 60
             D + +  +K G T    A       +A LL  R A ++    +D  + LH+A+ + N  +
Sbjct:   208 DTNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARND-ITPLHVASKRGNANM 266

Query:    61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
             V+LLL+    ++A    G T LH  A  ++     VE+L    A +  K K G +PLH+A
Sbjct:   267 VKLLLDRGAKIDAKTRDGLTPLHCGA--RSGHEQVVEMLLDRSAPILSKTKNGLSPLHMA 324

Query:   121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--G------ILLRKGADINVENNFGK 172
              +  +   V++L+ H    +   +    ALHVA   G      +LL K A  N +   G 
Sbjct:   325 TQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKASPNAKALNGF 384

Query:   173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEK 231
             T   +A +      +EL LK+G +++       V   G   +H+    GH N V  ++  
Sbjct:   385 TPLHIACKKNRIRVMELLLKHGASIQA------VTESGLTPIHVAAFMGHVNIVSQLMHH 438

Query:   232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIV 290
             GA+ +  +   +TAL +A   G  ++V +L+  GA V++  +   +PLH++       IV
Sbjct:   439 GASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIV 498

Query:   291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
             Q             T G T   PLHL  +    +   F  LL HGA++++   +  TPLH
Sbjct:   499 QQLLQQGASPNAATTSGYT---PLHLAAREGHEDVAAF--LLDHGASLSITTKKGFTPLH 553

Query:   351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ--NGYVAIPNLIRHGANVNARNK 408
             +A +    +  SLL++  A  +     G  PLH+A    N  VA+  L+  GA+ +A  K
Sbjct:   554 VAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALL-LLDQGASPHAAAK 612

Query:   409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
                TPLHIA ++  M     LLE+GA  +A T+ G   +++A +  ++ +V  LL   AN
Sbjct:   613 NGYTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNAN 672

Query:   469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV 528
             VN S++ G T LHLA +   V + E L+   A ++A+   G    YTPLH+     N  +
Sbjct:   673 VNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMG----YTPLHVGCHYGNIKI 728

Query:   529 INKLLDYNPDLDVKDKNGNTALH 551
             +N LL ++  ++ K KNG TALH
Sbjct:   729 VNFLLQHSAKVNAKTKNGYTALH 751

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 567 (204.7 bits), Expect = 2.0e-53, P = 2.0e-53
 Identities = 159/519 (30%), Positives = 247/519 (47%)

Query:     3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
             A ++A  ++G+T       S    + ++L +R A I      +G S LH+A    ++  V
Sbjct:   254 AKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSK-TKNGLSPLHMATQGDHLNCV 312

Query:    62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             +LLL++NV V+ V N   T LH  A          ++L   +AN N K   G TPLHIA 
Sbjct:   313 QLLLQHNVPVDDVTNDYLTALHVAAHCGHYK--VAKVLLDKKANPNAKALNGFTPLHIAC 370

Query:   122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-----VGI---LLRKGADINVENNFGKT 173
             +    K++ +L+ HGA  +     G   +HVA     V I   L+  GA  N  N  G+T
Sbjct:   371 KKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGET 430

Query:   174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
             A  MA        +   ++ G  VE        K   Q  LH+  R G  + V+ +L++G
Sbjct:   431 ALHMAARSGQAEVVRYLVQDGAQVEA-----KAKDD-QTPLHISARLGKADIVQQLLQQG 484

Query:   233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
             A+ +A      T L ++   GH  +  FLLDHGA +  + +   +PLH+A +   + +  
Sbjct:   485 ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVAN 544

Query:   292 XXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
                            G T   PLH+     +    +   LL  GA+ +       TPLHI
Sbjct:   545 LLLQKSASPDAAGKSGLT---PLHVAAHYDNQKVALL--LLDQGASPHAAAKNGYTPLHI 599

Query:   352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYA 410
             A +    D  + L+++GAD N +  QG   +H+A Q G+V + +L+    ANVN  NK  
Sbjct:   600 AAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSG 659

Query:   411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
              TPLH+A ++  ++    L+  GA VDA+T++G  PL++     N+ IV  LL+  A VN
Sbjct:   660 LTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVN 719

Query:   471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
             +  + G T LH A +  +  I+  LL N A  N   ++G
Sbjct:   720 AKTKNGYTPLHQAAQQGHTHIINVLLQNDASPNELTVNG 758

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 566 (204.3 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 159/519 (30%), Positives = 247/519 (47%)

Query:     3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
             A ++A  ++G+T       S    + ++L +R A I      +G S LH+A    ++  V
Sbjct:   292 AKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSK-TKNGLSPLHMATQGDHLNCV 350

Query:    62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             +LLL++NV V+ V N   T LH  A          ++L   +AN N K   G TPLHIA 
Sbjct:   351 QLLLQHNVPVDDVTNDYLTALHVAAHCGHYK--VAKVLLDKKANPNAKALNGFTPLHIAC 408

Query:   122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-----VGI---LLRKGADINVENNFGKT 173
             +    K++ +L+ HGA  +     G   +HVA     V I   L+  GA  N  N  G+T
Sbjct:   409 KKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGET 468

Query:   174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
             A  MA        +   ++ G  VE        K   Q  LH+  R G  + V+ +L++G
Sbjct:   469 ALHMAARSGQAEVVRYLVQDGAQVEA-----KAKDD-QTPLHISARLGKADIVQQLLQQG 522

Query:   233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
             A+ +A      T L ++   GH  +  FLLDHGA +  + +   +PLH+A +   + +  
Sbjct:   523 ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVAN 582

Query:   292 XXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
                            G T   PLH+     +    +   LL  GA+ +       TPLHI
Sbjct:   583 LLLQKSASPDAAGKSGLT---PLHVAAHYDNQKVALL--LLDQGASPHAAAKNGYTPLHI 637

Query:   352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR-HGANVNARNKYA 410
             A +    D  + L+++GAD N +  QG   +H+A Q G+V + +L+    ANVN  NK  
Sbjct:   638 AAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSG 697

Query:   411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
              TPLH+A ++  ++    L+  GA VDA+T++G  PL++     N+ IV  LL+  A VN
Sbjct:   698 LTPLHLAAQEDRVNVAEVLVNQGANVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVN 757

Query:   471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
             +  + G T LH A +  +  I+  LL N A  N   ++G
Sbjct:   758 ARTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNG 796

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 565 (203.9 bits), Expect = 2.8e-53, P = 2.8e-53
 Identities = 169/560 (30%), Positives = 269/560 (48%)

Query:     4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
             D+N +N+ G+     A       +   L +RGA++ D     G + LHIA+      +V+
Sbjct:    24 DINISNQNGLNALHLASKEGHVEVVSELIQRGASV-DAATKKGNTALHIASLAGQAEVVK 82

Query:    63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
             +L+    +VNA    G T L+  A     +   V+ L  N A+ ++  ++G TPL +A +
Sbjct:    83 VLVTNRANVNAQSQNGFTPLYMAAQENHLE--VVKFLLDNGASQSLATEDGFTPLAVALQ 140

Query:   123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKTA 174
              G+ ++V +L+++    + K      ALH+A          +LL+   + +VE+  G T 
Sbjct:   141 QGHDQVVSLLLEN----DTKGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTP 196

Query:   175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
               +A    N     L L  G  V+    ++         LH+  + G+ N VKL+L++GA
Sbjct:   197 LHIAAHYGNINVATLLLNRGAAVDFTARNDITP------LHVASKRGNANMVKLLLDRGA 250

Query:   234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQX 292
              + AK +   T L      GH ++VE LLD GA + S  +   SPLH+A +  H+  VQ 
Sbjct:   251 KIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQL 310

Query:   293 XXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                             T    LH+      +     K LL   AN N K     TPLHIA
Sbjct:   311 LIQHNVPVDDVTNDYLT---ALHVAAHCGHYKVA--KVLLDKKANPNAKALNGFTPLHIA 365

Query:   353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
              +      + LL+KHGA +  +   G  P+H+A   G+V I + L+ HGA+ N  N   +
Sbjct:   366 CKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGE 425

Query:   412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             T LH+A        + YL+++GAQV+A+ +  + PL+I+  +    IV+QLL+  A+ N+
Sbjct:   426 TALHMAARAGQTEVVRYLVQNGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA 485

Query:   472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +   G T LHL+ +  +  +   LL + A +   II+   KG+TPLH+A +     V N 
Sbjct:   486 ATTSGYTPLHLSAREGHEDVASVLLEHGASL--AIITK--KGFTPLHVAAKYGKIEVANL 541

Query:   532 LLDYNPDLDVKDKNGNTALH 551
             LL  N   D   K+G T LH
Sbjct:   542 LLQKNASPDASGKSGLTPLH 561

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 565 (203.9 bits), Expect = 2.9e-53, P = 2.9e-53
 Identities = 169/560 (30%), Positives = 269/560 (48%)

Query:     4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
             D+N +N+ G+     A       +   L +RGA++ D     G + LHIA+      +V+
Sbjct:    24 DINISNQNGLNALHLASKEGHVEVVSELIQRGASV-DAATKKGNTALHIASLAGQAEVVK 82

Query:    63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
             +L+    +VNA    G T L+  A     +   V+ L  N A+ ++  ++G TPL +A +
Sbjct:    83 VLVTNRANVNAQSQNGFTPLYMAAQENHLE--VVKFLLDNGASQSLATEDGFTPLAVALQ 140

Query:   123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKTA 174
              G+ ++V +L+++    + K      ALH+A          +LL+   + +VE+  G T 
Sbjct:   141 QGHDQVVSLLLEN----DTKGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTP 196

Query:   175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
               +A    N     L L  G  V+    ++         LH+  + G+ N VKL+L++GA
Sbjct:   197 LHIAAHYGNINVATLLLNRGAAVDFTARNDITP------LHVASKRGNANMVKLLLDRGA 250

Query:   234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQX 292
              + AK +   T L      GH ++VE LLD GA + S  +   SPLH+A +  H+  VQ 
Sbjct:   251 KIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQL 310

Query:   293 XXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                             T    LH+      +     K LL   AN N K     TPLHIA
Sbjct:   311 LIQHNVPVDDVTNDYLT---ALHVAAHCGHYKVA--KVLLDKKANPNAKALNGFTPLHIA 365

Query:   353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
              +      + LL+KHGA +  +   G  P+H+A   G+V I + L+ HGA+ N  N   +
Sbjct:   366 CKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGE 425

Query:   412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             T LH+A        + YL+++GAQV+A+ +  + PL+I+  +    IV+QLL+  A+ N+
Sbjct:   426 TALHMAARAGQTEVVRYLVQNGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA 485

Query:   472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +   G T LHL+ +  +  +   LL + A +   II+   KG+TPLH+A +     V N 
Sbjct:   486 ATTSGYTPLHLSAREGHEDVASVLLEHGASL--AIITK--KGFTPLHVAAKYGKIEVANL 541

Query:   532 LLDYNPDLDVKDKNGNTALH 551
             LL  N   D   K+G T LH
Sbjct:   542 LLQKNASPDASGKSGLTPLH 561

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 565 (203.9 bits), Expect = 3.1e-53, P = 3.1e-53
 Identities = 169/560 (30%), Positives = 269/560 (48%)

Query:     4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
             D+N +N+ G+     A       +   L +RGA++ D     G + LHIA+      +V+
Sbjct:    24 DINISNQNGLNALHLASKEGHVEVVSELIQRGASV-DAATKKGNTALHIASLAGQAEVVK 82

Query:    63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
             +L+    +VNA    G T L+  A     +   V+ L  N A+ ++  ++G TPL +A +
Sbjct:    83 VLVTNRANVNAQSQNGFTPLYMAAQENHLE--VVKFLLDNGASQSLATEDGFTPLAVALQ 140

Query:   123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKTA 174
              G+ ++V +L+++    + K      ALH+A          +LL+   + +VE+  G T 
Sbjct:   141 QGHDQVVSLLLEN----DTKGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTP 196

Query:   175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
               +A    N     L L  G  V+    ++         LH+  + G+ N VKL+L++GA
Sbjct:   197 LHIAAHYGNINVATLLLNRGAAVDFTARNDITP------LHVASKRGNANMVKLLLDRGA 250

Query:   234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQX 292
              + AK +   T L      GH ++VE LLD GA + S  +   SPLH+A +  H+  VQ 
Sbjct:   251 KIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQL 310

Query:   293 XXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                             T    LH+      +     K LL   AN N K     TPLHIA
Sbjct:   311 LIQHNVPVDDVTNDYLT---ALHVAAHCGHYKVA--KVLLDKKANPNAKALNGFTPLHIA 365

Query:   353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
              +      + LL+KHGA +  +   G  P+H+A   G+V I + L+ HGA+ N  N   +
Sbjct:   366 CKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGE 425

Query:   412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             T LH+A        + YL+++GAQV+A+ +  + PL+I+  +    IV+QLL+  A+ N+
Sbjct:   426 TALHMAARAGQTEVVRYLVQNGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA 485

Query:   472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +   G T LHL+ +  +  +   LL + A +   II+   KG+TPLH+A +     V N 
Sbjct:   486 ATTSGYTPLHLSAREGHEDVASVLLEHGASL--AIITK--KGFTPLHVAAKYGKIEVANL 541

Query:   532 LLDYNPDLDVKDKNGNTALH 551
             LL  N   D   K+G T LH
Sbjct:   542 LLQKNASPDASGKSGLTPLH 561

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|K7GSS3 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 567 (204.7 bits), Expect = 3.3e-53, P = 3.3e-53
 Identities = 159/519 (30%), Positives = 247/519 (47%)

Query:     3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
             A ++A  ++G+T       S    + ++L +R A I      +G S LH+A    ++  V
Sbjct:   262 AKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSK-TKNGLSPLHMATQGDHLNCV 320

Query:    62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             +LLL++NV V+ V N   T LH  A          ++L   +AN N K   G TPLHIA 
Sbjct:   321 QLLLQHNVPVDDVTNDYLTALHVAAHCGHYK--VAKVLLDKKANPNAKALNGFTPLHIAC 378

Query:   122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-----VGI---LLRKGADINVENNFGKT 173
             +    K++ +L+ HGA  +     G   +HVA     V I   L+  GA  N  N  G+T
Sbjct:   379 KKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGET 438

Query:   174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
             A  MA        +   ++ G  VE        K   Q  LH+  R G  + V+ +L++G
Sbjct:   439 ALHMAARSGQAEVVRYLVQDGAQVEA-----KAKDD-QTPLHISARLGKADIVQQLLQQG 492

Query:   233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
             A+ +A      T L ++   GH  +  FLLDHGA +  + +   +PLH+A +   + +  
Sbjct:   493 ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVAN 552

Query:   292 XXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
                            G T   PLH+     +    +   LL  GA+ +       TPLHI
Sbjct:   553 LLLQKSASPDAAGKSGLT---PLHVAAHYDNQKVALL--LLDQGASPHAAAKNGYTPLHI 607

Query:   352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYA 410
             A +    D  + L+++GAD N +  QG   +H+A Q G+V + +L+    ANVN  NK  
Sbjct:   608 AAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSG 667

Query:   411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
              TPLH+A ++  ++    L+  GA VDA+T++G  PL++     N+ IV  LL+  A VN
Sbjct:   668 LTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVN 727

Query:   471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
             +  + G T LH A +  +  I+  LL N A  N   ++G
Sbjct:   728 AKTKNGYTPLHQAAQQGHTHIINVLLQNDASPNELTVNG 766

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 565 (203.9 bits), Expect = 3.4e-53, P = 3.4e-53
 Identities = 169/560 (30%), Positives = 269/560 (48%)

Query:     4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
             D+N +N+ G+     A       +   L +RGA++ D     G + LHIA+      +V+
Sbjct:    24 DINISNQNGLNALHLASKEGHVEVVSELIQRGASV-DAATKKGNTALHIASLAGQAEVVK 82

Query:    63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
             +L+    +VNA    G T L+  A     +   V+ L  N A+ ++  ++G TPL +A +
Sbjct:    83 VLVTNRANVNAQSQNGFTPLYMAAQENHLE--VVKFLLDNGASQSLATEDGFTPLAVALQ 140

Query:   123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKTA 174
              G+ ++V +L+++    + K      ALH+A          +LL+   + +VE+  G T 
Sbjct:   141 QGHDQVVSLLLEN----DTKGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTP 196

Query:   175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
               +A    N     L L  G  V+    ++         LH+  + G+ N VKL+L++GA
Sbjct:   197 LHIAAHYGNINVATLLLNRGAAVDFTARNDITP------LHVASKRGNANMVKLLLDRGA 250

Query:   234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQX 292
              + AK +   T L      GH ++VE LLD GA + S  +   SPLH+A +  H+  VQ 
Sbjct:   251 KIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQL 310

Query:   293 XXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                             T    LH+      +     K LL   AN N K     TPLHIA
Sbjct:   311 LIQHNVPVDDVTNDYLT---ALHVAAHCGHYKVA--KVLLDKKANPNAKALNGFTPLHIA 365

Query:   353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
              +      + LL+KHGA +  +   G  P+H+A   G+V I + L+ HGA+ N  N   +
Sbjct:   366 CKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGE 425

Query:   412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             T LH+A        + YL+++GAQV+A+ +  + PL+I+  +    IV+QLL+  A+ N+
Sbjct:   426 TALHMAARAGQTEVVRYLVQNGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA 485

Query:   472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +   G T LHL+ +  +  +   LL + A +   II+   KG+TPLH+A +     V N 
Sbjct:   486 ATTSGYTPLHLSAREGHEDVASVLLEHGASL--AIITK--KGFTPLHVAAKYGKIEVANL 541

Query:   532 LLDYNPDLDVKDKNGNTALH 551
             LL  N   D   K+G T LH
Sbjct:   542 LLQKNASPDASGKSGLTPLH 561

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	553
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-30
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-29
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-29
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-29
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-27
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-26
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-26
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-26
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-25
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-23
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-23
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-22
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-22
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-22
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-22
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-21
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-21
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-20
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-19
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-19
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-15
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-14
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-13
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-12
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-11
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	4e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	7e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-08
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	7e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	4e-06
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	6e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	7e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.003
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.003
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.004
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  122 bits (307), Expect = 5e-30
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 32/266 (12%)

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCK-----TALDIAVEHGHLKIVEFLLDHGACVDSLQ 272
                  +K+   K   +               L +A E  ++ +V+ LLD+GA ++S  
Sbjct: 6   VLTKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSST 65

Query: 273 FIHS-PLHLAIEKQHIA-----IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTT 326
             +S PLH     ++       IV+LLL       N+N        PL   + +KS + +
Sbjct: 66  KNNSTPLHYLSNIKYNLTDVKEIVKLLL---EYGANVNAPDNNGITPLLYAISKKSNSYS 122

Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA--VSLLVKHGADVNVIDNQGQMPLHI 384
           + + LL +GANVN+K+ + +  LH+ +ES   D   + LL+  G D+N  +         
Sbjct: 123 IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-------- 174

Query: 385 AVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGK 444
                   +  L+ +G  +N ++ Y  TPLH AV   N   + YLL+ GA  +   + G 
Sbjct: 175 --------VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD 226

Query: 445 DPLYIAVEMHNLSIVEQLLKFKANVN 470
            PL+IA+  +N  I + LL    ++ 
Sbjct: 227 TPLHIAILNNNKEIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  120 bits (304), Expect = 1e-29
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 29/261 (11%)

Query: 255 LKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP 313
           +K +++++      D   +    PL+LA E ++I +V++LL   +N  +IN+    N  P
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILL---DNGADINSSTKNNSTP 71

Query: 314 LHLVVQRKS---WNTTMFKTLLYHGANVNVKDDENKTPLHIAI--ESQCWDAVSLLVKHG 368
           LH +   K        + K LL +GANVN  D+   TPL  AI  +S  +  V  L+ +G
Sbjct: 72  LHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131

Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIP---NLIRHGANVNARNKYAKTPLHIAVEQKNMSA 425
           A+VN+ ++ G+  LH+ +++  + +     LI  G ++NA+N+                 
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR----------------- 174

Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
           +NYLL +G  ++ +   G  PL+ AV  +N   V+ LL   AN N  +++G T LH+A+ 
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 486 IQNVAILECLLVNKADINAKI 506
             N  I + LL N   I   I
Sbjct: 235 NNNKEIFKLLLNNGPSIKTII 255

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score =  123 bits (309), Expect = 1e-29
 Identities = 111/347 (31%), Positives = 174/347 (50%), Gaps = 41/347 (11%)

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEK 284
           +++LE GA+V+AKD  C T +  A E G+ K+V  LL +GA V+ +     S L  A++ 
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS 221

Query: 285 QHIAIVQLLLRRNNNNIN---------------------------INTKGPTNKAPLHLV 317
           ++I  ++ ++  N +NIN                           +N+       PLH  
Sbjct: 222 KNIDTIKAIID-NRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHA 280

Query: 318 VQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI-AIESQCWDAVSLLVKHGADVNVIDN 376
            Q  S +  + K LL  GA+VN K+ + +TPL++ A      + +  L+  GADVN  D 
Sbjct: 281 SQAPSLSRLVPK-LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR 339

Query: 377 QGQMPLHIA--VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
               PLH A  +      +  L+  GANVNAR+   KTP+H A  + N+  +N LL++GA
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA 399

Query: 435 QVDARTQLGKDPLYIAVEMHN-LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ-NVAIL 492
            ++A +Q     L+ A+   N    V+ L+   ANVNS ++   T LH A K    + ++
Sbjct: 400 DIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVI 459

Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL 539
           E LL N AD+NA  I   +    PL +A+E +   ++N LL Y  +L
Sbjct: 460 EMLLDNGADVNAINIQNQY----PLLIALEYH--GIVNILLHYGAEL 500

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  112 bits (281), Expect = 2e-29
 Identities = 55/126 (43%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLI 397
           N +D++ +TPLH+A  +   + V LL+++GADVN  DN G+ PLH+A +NG++ I   L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 398 RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457
             GA+VNAR+K   TPLH+A    N+  +  LL+HGA V+AR + G+ PL++A +  +L 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 458 IVEQLL 463
           +V+ LL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score =  119 bits (299), Expect = 5e-29
 Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 57/328 (17%)

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEK 284
           K+I  KG  ++       T L  A+  G  KIVE  + HGA ++ +   I  PL  AI+ 
Sbjct: 19  KIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI 78

Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
               I++LL+   +N ++      T+  P+  +         M KT+L  G +VN+KD E
Sbjct: 79  GAHDIIKLLI---DNGVD------TSILPIPCI------EKDMIKTILDCGIDVNIKDAE 123

Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGANV 403
            KT LH AI+    +++ +L ++GADVN+ D+ G  P+HIA++ N +  I  L+  GA  
Sbjct: 124 LKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
           N ++   ++PLH A E  + + +  L++HG  +  + + G  PL+ A+ +HN S +E   
Sbjct: 184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAIE--- 239

Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
                                          LL+N A IN + I G     TPLH A+  
Sbjct: 240 -------------------------------LLINNASINDQDIDG----STPLHHAINP 264

Query: 524 N-NEAVINKLLDYNPDLDVKDKNGNTAL 550
             +  +I+ LL +  D+ +KD  G   +
Sbjct: 265 PCDIDIIDILLYHKADISIKDNKGENPI 292

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  119 bits (301), Expect = 5e-29
 Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 15/260 (5%)

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTT-MFKTLLYHGANVNVKDDENKTPLHIAIESQC-WD 359
           ++N +G   K PLHL +   S     + + LL  GA+VN  +    TPLH+ + +    D
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA---IPNLIRHGANVNARNKYAKTPLHI 416
            + LL+K GADVN  D  G+ PLH+ +    +    I  L+R GA+VNA + Y  TPL +
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Query: 417 AVEQKNMSA--LNYLLEHGAQVDARTQLGKDPL-YIAVEMH-NLSIVEQLLKFKANVNSS 472
            ++ +N +   L  L++ GA V A     +  L +          IV +L++   +  ++
Sbjct: 159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT 218

Query: 473 DQFGRTVLHLAVKIQNVA--ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
           D  G T LH      +    ++  LL+    INA+   G     TPLH A   NN     
Sbjct: 219 DMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYG----QTPLHYAAVFNNPRACR 274

Query: 531 KLLDYNPDLDVKDKNGNTAL 550
           +L+    D++    +GNT L
Sbjct: 275 RLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  109 bits (275), Expect = 1e-28
 Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 1/126 (0%)

Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL 430
           N  D  G+ PLH+A  NG++ +   L+ +GA+VNA++   +TPLH+A +  ++  +  LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVA 490
           E GA V+AR + G  PL++A    NL +V+ LLK  A+VN+ D+ GRT LHLA K  ++ 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 491 ILECLL 496
           +++ LL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (264), Expect = 5e-27
 Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 3/119 (2%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
           PLHL       +  + K LL +GA+VN KD++ +TPLH+A ++   + V LL++ GADVN
Sbjct: 10  PLHLAASNG--HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 373 VIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL 430
             D  G  PLH+A +NG +  +  L++HGA+VNAR+K  +TPLH+A +  ++  +  LL
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  112 bits (282), Expect = 1e-26
 Identities = 76/282 (26%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGH---LKIVEFLLDHGACVDSLQFI-HSPL 278
             V+ +L  GA+V+ + +  KT L + + +       IV  LL+ GA V++ +    +PL
Sbjct: 28  EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPL 87

Query: 279 HLAIE-KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
           HL +     + +++LL++      ++N K    + PLH+ +   + N  + + LL  GA+
Sbjct: 88  HLYLYNATTLDVIKLLIK---AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD 144

Query: 338 VNVKDDENKTPLHIAIESQ--CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN---GYVA 392
           VN  D    TPL + ++S+    + + LL+  GADV  +D++ +  LH  +Q+       
Sbjct: 145 VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI 204

Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNY--LLEHGAQVDARTQLGKDPLYIA 450
           +  LIR G +  A +    TPLH      +        LL  G  ++AR + G+ PL+ A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
              +N     +L+   A++N+    G T L L V+  N   +
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  111 bits (279), Expect = 2e-26
 Identities = 72/266 (27%), Positives = 119/266 (44%), Gaps = 33/266 (12%)

Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
           V+ +      +   +        PL+L  + +  N  + K LL +GA++N     N TPL
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEAR--NIDVVKILLDNGADINSSTKNNSTPL 72

Query: 350 HI-----AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ---NGYVAIPNLIRHGA 401
           H         +   + V LL+++GA+VN  DN G  PL  A+    N Y  +  L+ +GA
Sbjct: 73  HYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA 132

Query: 402 NVNARNKYAKTPLHIAVEQK--NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           NVN +N   +  LH+ +E    ++  L  L++ G  ++A+ +                 V
Sbjct: 133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-----------------V 175

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
             LL +   +N  D +G T LH AV   N   ++ LL   A+ N         G TPLH+
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK----YGDTPLHI 231

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKN 545
           A+ +NN+ +   LL+  P +    + 
Sbjct: 232 AILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (258), Expect = 3e-26
 Identities = 51/130 (39%), Positives = 83/130 (63%), Gaps = 4/130 (3%)

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
           NAR++  +TPLH+A    ++  +  LLE+GA V+A+   G+ PL++A +  +L IV+ LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
           +  A+VN+ D+ G T LHLA +  N+ +++ LL + AD+NA+       G TPLHLA ++
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD----GRTPLHLAAKN 116

Query: 524 NNEAVINKLL 533
            +  V+  LL
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  110 bits (276), Expect = 9e-26
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 19/238 (7%)

Query: 328 FKTLLYHGANVNVKDDENKTPLHI---AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
            + LL  GA+VN + +  KTPLH+       +  D V LL++ GADVN  +  G  PLH+
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 385 AVQNGYVA--IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSA--LNYLLEHGAQVDART 440
            + N      I  LI+ GA+VNA++K  +TPLH+ +   N++   +  LL  GA V+A  
Sbjct: 90  YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD 149

Query: 441 QLGKDPLYIAVEMHN--LSIVEQLLKFKANVNSSDQFGRTVLH---LAVKIQNVAILECL 495
             G  PL + ++  N  + ++  L+   A+V + D   R++LH    + K +   I+  L
Sbjct: 150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA-RIVREL 208

Query: 496 LVNKADINAKIISGIWKGYTPLHLAV--ESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           +    D  A  + G     TPLH      S   +++  LL     ++ +++ G T LH
Sbjct: 209 IRAGCDPAATDMLG----NTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLH 262

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score =  111 bits (278), Expect = 1e-25
 Identities = 108/383 (28%), Positives = 171/383 (44%), Gaps = 48/383 (12%)

Query: 97  EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI 156
           E+L    A+VN K+    TP+H AA  GN KMV +L+ +                     
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY--------------------- 200

Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
               GAD+N+      +  + A + KN   I+  +             N+      LL  
Sbjct: 201 ----GADVNIIALDDLSVLECAVDSKNIDTIKAIIDN---------RSNINKNDLSLLKA 247

Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL-KIVEFLLDHGACVDSLQFI- 274
           +RN       L+ + G +V++ D    T L  A +   L ++V  LL+ GA V++     
Sbjct: 248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307

Query: 275 HSPLHLAIEKQHIA--IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL 332
            +PL+L  +  +    I  L++       ++N        PLH           +  TLL
Sbjct: 308 ETPLYLMAKNGYDTENIRTLIML----GADVNAADRLYITPLHQASTLDRNKDIVI-TLL 362

Query: 333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV--QNGY 390
             GANVN +D  +KTP+H A        ++ L+ +GAD+  +  +    LH A+   N Y
Sbjct: 363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY 422

Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQK-NMSALNYLLEHGAQVDARTQLGKDPLYI 449
           +++  LI  GANVN++NK   TPLH A ++   +  +  LL++GA V+A     + PL I
Sbjct: 423 MSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI 482

Query: 450 AVEMHNLSIVEQLLKFKANVNSS 472
           A+E H   IV  LL + A +  S
Sbjct: 483 ALEYH--GIVNILLHYGAELRDS 503

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  102 bits (257), Expect = 1e-23
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 31/233 (13%)

Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           K ++      +    +   PL++A E++  D V +L+ +GAD+N        PLH     
Sbjct: 19  KYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI 78

Query: 389 GYVAIPN------LIRHGANVNARNKYAKTPLHIAVEQK--NMSALNYLLEHGAQVDART 440
            Y           L+ +GANVNA +    TPL  A+ +K  + S + YLL++GA V+ + 
Sbjct: 79  KYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN 138

Query: 441 QLGKDPLYIAVE--MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
             G++ L++ +E    +L I++ L+    ++N+ ++                 +  LL  
Sbjct: 139 SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSY 181

Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
              IN K +     G+TPLH AV +NN   +  LLD   + ++ +K G+T LH
Sbjct: 182 GVPINIKDV----YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLH 230

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 96.3 bits (240), Expect = 1e-23
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 4/115 (3%)

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
           +AR + G+ PL++A    +L +V+ LL+  A+VN+ D  GRT LHLA K  ++ I++ LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
              AD+NA+       G TPLHLA  + N  V+  LL +  D++ +DK+G T LH
Sbjct: 61  EKGADVNARDK----DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 46/164 (28%)

Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILL 158
           N ++++G TPLH+AA  G+ ++V++L+++GA    K++ G   LH+A          +LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR 218
            KGAD+N  +  G T   +A                                       R
Sbjct: 61  EKGADVNARDKDGNTPLHLA--------------------------------------AR 82

Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLL 262
           NG+ + VKL+L+ GA+V+A+D+  +T L +A ++GHL++V+ LL
Sbjct: 83  NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 50/129 (38%), Positives = 81/129 (62%), Gaps = 4/129 (3%)

Query: 6   NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLL 64
           NA +++G T    A  +    + KLL E GA++N    +DG++ LH+AA   ++ +V+LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLL 59

Query: 65  LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
           LE   DVNA D  GNT LH  A     +   V++L  + A+VN ++K+G TPLH+AA+ G
Sbjct: 60  LEKGADVNARDKDGNTPLHLAAR--NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117

Query: 125 NYKMVRVLI 133
           + ++V++L+
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  102 bits (257), Expect = 2e-23
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 19/276 (6%)

Query: 205 NVKHGGQLL---LH-LVRNGHQN---AVKLILEKGANVHAKDQLCKTALDIAVEHGH-LK 256
           +V   G+     LH  +    +     V+L+LE GA+V+A ++   T L + + +   L 
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 257 IVEFLLDHGACVDSLQFIH-SPLH--LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP 313
           +++ L+  GA V++   +  +PLH  L+    +  +++LLLR+     ++N        P
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG---ADVNALDLYGMTP 155

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA--VSLLVKHGADV 371
           L ++++ ++ N  + + L+  GA+V   DD  ++ LH  ++S    A  V  L++ G D 
Sbjct: 156 LAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP 215

Query: 372 NVIDNQGQMPLHIAVQNGYVA---IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
              D  G  PLH            +  L+  G ++NARN+Y +TPLH A    N  A   
Sbjct: 216 AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR 275

Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           L+  GA ++A +  G  PL + V  +N   V   L 
Sbjct: 276 LIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score =  103 bits (258), Expect = 3e-23
 Identities = 128/450 (28%), Positives = 200/450 (44%), Gaps = 78/450 (17%)

Query: 2   DADVNATNK--EGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATK- 56
           D   +  N+  E + L ++ I   +  IA++L E GA++N  D +     + +H AA + 
Sbjct: 133 DIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIY---CITPIHYAAERG 189

Query: 57  NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTP 116
           N ++V LLL Y  DVN +     +VL      K  D   ++ +  NR+N+N    + D  
Sbjct: 190 NAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID--TIKAIIDNRSNIN----KNDLS 243

Query: 117 LHIAARTGNYKMVRVLIDHGAHT----ECKNHQGYNA-----LHVAVGILLRKGADINVE 167
           L  A R  + +   +L D G       +CKN   ++A     L   V  LL +GAD+N +
Sbjct: 244 LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK 303

Query: 168 NNFGKTA-FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLVRNGHQNAV 225
           N  G+T  + MA    +   I   +  G +V           H    L     + +++ V
Sbjct: 304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL-----DRNKDIV 358

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
             +LE GANV+A+D   KT +  A    ++ I+  LLD+GA +++L Q I + LH A+  
Sbjct: 359 ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG 418

Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
                                   TN                  KTL+  GANVN K+ +
Sbjct: 419 ------------------------TNP-------------YMSVKTLIDRGANVNSKNKD 441

Query: 345 NKTPLHIAIESQC-WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRH-GAN 402
             TPLH A +  C  D + +L+ +GADVN I+ Q Q PL IA+   Y  I N++ H GA 
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAE 499

Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +       K+         NM +  Y++ H
Sbjct: 500 LRDSRVLHKS------LNDNMFSFRYIIAH 523

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.8 bits (236), Expect = 3e-23
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 10/128 (7%)

Query: 72  NAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRV 131
           NA D  G T LH   +        V++L  N A+VN K+ +G TPLH+AA+ G+ ++V++
Sbjct: 1   NARDEDGRTPLH--LAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 132 LIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
           L++ GA    ++  G   LH+A          +LL+ GAD+N  +  G+T   +A +  +
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

Query: 184 FPAIELFL 191
              ++L L
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score =  101 bits (252), Expect = 9e-23
 Identities = 84/293 (28%), Positives = 137/293 (46%), Gaps = 42/293 (14%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLV----------------VQR 320
           PLH A+E +++ +V+ LL R     N+N     +  PLH++                 + 
Sbjct: 40  PLHQAVEARNLDVVKSLLTR---GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC 96

Query: 321 KSWNTTMFKTLLYHGANVNV-------KDDENKTPLHIAIESQCWDA------VSLLVKH 367
             + T +     ++  NV +       +    +T   + I+ +  D         LL+ +
Sbjct: 97  SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY 156

Query: 368 GADVNVID-NQGQMPLHIAVQN-GYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSA 425
           GAD+N+ D ++G   LH A +N        L+ +GANVN  +K   +PLH AV+  N   
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216

Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAV-EMHNLSIVEQLLKFKANVNS-SDQFGRTVLHLA 483
           ++ LLE+GA  DAR + G  PL+I+V    +  I++ LL+   +VN+ S   G T LH +
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Query: 484 VKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
           +K +    L+ LL   ADIN+          TPL  AV+      I ++L  N
Sbjct: 277 IKSERK--LKLLLEYGADINSL----NSYKLTPLSSAVKQYLCINIGRILISN 323

Length = 477

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 91.7 bits (228), Expect = 3e-22
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 40/158 (25%)

Query: 210 GQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
           G+  LHL   NGH   VKL+LE GA+V+AKD   +T L +A ++GHL+IV+ LL+ GA V
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
           ++  +  ++PLHLA    ++ +V+LLL+                                
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLK-------------------------------- 94

Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
                 HGA+VN +D + +TPLH+A ++   + V LL+
Sbjct: 95  ------HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 98.9 bits (246), Expect = 3e-22
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 21/305 (6%)

Query: 88  IKTRDPTAVEILKTNRAN-VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
           I + D  A+E +  N+ N +NI   E  TPL  A R+G+ K+V + I HGA     N + 
Sbjct: 9   IYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI 68

Query: 147 YNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
            + L  A+ I       + ++N    +   +    K+   I+  L  G++V       N+
Sbjct: 69  PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD--MIKTILDCGIDV-------NI 119

Query: 207 KHG--GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
           K       L + ++ G   ++K++ E GA+V+ +D      + IA++H    I++ LL+ 
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 265 GACVD-SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           GA  +       SPLH A E    A ++LL+   N+ +N    G T   PLH  +     
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT---PLHNAI---IH 233

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC-WDAVSLLVKHGADVNVIDNQGQMPL 382
           N +  + LL + A++N +D +  TPLH AI   C  D + +L+ H AD+++ DN+G+ P+
Sbjct: 234 NRSAIE-LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPI 292

Query: 383 HIAVQ 387
             A +
Sbjct: 293 DTAFK 297

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 75/309 (24%), Positives = 131/309 (42%), Gaps = 64/309 (20%)

Query: 20  IVSSQTPIAKLLAERGANINDPFPDDGK----SCLHIAAT-KNIRLVRLLLE--YNVDVN 72
           IV +++ I K+   +   + D   D         L++A   +NI +V++LL+   +++ +
Sbjct: 5   IVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSS 64

Query: 73  AVDNLGNTVLHTVA-SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART--GNYKMV 129
             +N       +      T     V++L    ANVN  +  G TPL  A      +Y +V
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV 124

Query: 130 RVLIDHGAHTECKNHQGYNALHVAVG----------ILLRKGADINVENNFGKTAFQMAY 179
             L+D+GA+   KN  G N LH+ +           +L+ KG DIN +N           
Sbjct: 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR---------- 174

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVK--HGGQLLLHLVRNGHQNAVKLILEKGANVHA 237
                  +   L YGV +       N+K  +G   L + V N +   VK +L+ GAN + 
Sbjct: 175 -------VNYLLSYGVPI-------NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Query: 238 KDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRN 297
            ++   T L IA+ + + +I + LL++G  +                    I++ LL   
Sbjct: 221 VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK------------------TIIETLLYFK 262

Query: 298 NNNININTK 306
           + ++N  TK
Sbjct: 263 DKDLNTITK 271

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 98.2 bits (245), Expect = 7e-22
 Identities = 82/357 (22%), Positives = 133/357 (37%), Gaps = 76/357 (21%)

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHT-VASIKTRDPTAVEILKTNRANVNIKNKEGDTP 116
           +  VR LL    DVN     G T LH  +     +    V +L    A+VN   + G TP
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 117 LHIAARTGN-YKMVRVLIDHGAHTECKNHQGYNALHV----------AVGILLRKGADIN 165
           LH+         ++++LI  GA    K+  G   LHV           + +LLRKGAD+N
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKY-GVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
             + +G T             + + LK    NVE                          
Sbjct: 147 ALDLYGMTP------------LAVLLKSRNANVE-------------------------L 169

Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHL-------KIVEFLLDHGACVDSLQ-FIHS 276
           ++L+++ GA+V+A D   ++ L       HL       +IV  L+  G    +     ++
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHH-----HLQSFKPRARIVRELIRAGCDPAATDMLGNT 224

Query: 277 PLHLAIEK---QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
           PLH        +   ++ LL+      I+IN +    + PLH        N    + L+ 
Sbjct: 225 PLHSMATGSSCKRSLVLPLLI----AGISINARNRYGQTPLHYAA--VFNNPRACRRLIA 278

Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
            GA++N    +  TPL + + +    AV   +        +       L+ A   G 
Sbjct: 279 LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAAT----LNTASVAGG 331

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 98.6 bits (245), Expect = 1e-21
 Identities = 82/274 (29%), Positives = 142/274 (51%), Gaps = 17/274 (6%)

Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
           I++  + I ++LL       ++N K      P+H   +R   N  M   LL +GA+VN+ 
Sbjct: 153 IQQDELLIAEMLLEGG---ADVNAKDIYCITPIHYAAERG--NAKMVNLLLSYGADVNII 207

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRH-G 400
             ++ + L  A++S+  D +  ++ + +++N  D    + L  A++N  +    L+   G
Sbjct: 208 ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND----LSLLKAIRNEDLETSLLLYDAG 263

Query: 401 ANVNARNKYAKTPLHIAVEQKNMSAL-NYLLEHGAQVDARTQLGKDPLYI-AVEMHNLSI 458
            +VN+ +    TPLH A +  ++S L   LLE GA V+A+   G+ PLY+ A   ++   
Sbjct: 264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTEN 323

Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKI-QNVAILECLLVNKADINAKIISGIWKGYTPL 517
           +  L+   A+VN++D+   T LH A  + +N  I+  LL   A++NA+     +   TP+
Sbjct: 324 IRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD----YCDKTPI 379

Query: 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           H A   NN  +IN LLDY  D++   +   TALH
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALH 413

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 96.6 bits (240), Expect = 2e-21
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 30/238 (12%)

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ---------- 387
           +N+  DE  TPL  AI S     V L +KHGAD+N I+ +   PL  A++          
Sbjct: 28  INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLL 87

Query: 388 --NGY----VAIPNL--------IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
             NG     + IP +        +  G +VN ++   KT LH A+++ ++ ++  L E+G
Sbjct: 88  IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147

Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           A V+     G  P++IA++ +   I++ LL+  A  N  D  G + LH A +  + A ++
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK 207

Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            L+ +   I  K       G+TPLH A+  N  A+  +LL  N  ++ +D +G+T LH
Sbjct: 208 LLIDHGNHIMNKCK----NGFTPLHNAIIHNRSAI--ELLINNASINDQDIDGSTPLH 259

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 92.3 bits (229), Expect = 8e-20
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 24  QTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVL 82
           +  I KLL   GA+IN      G + LH A   K+ RL  LLL Y  +VN  D   N+ L
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 83  HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA-ARTGNYKMVRVLIDHGAHTEC 141
           H   ++K  +   V IL  N A+ + ++K G+TPLHI+     +Y ++++L++HG     
Sbjct: 206 H--HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 142 KNH-QGYNALHVAV------GILLRKGADINVENNFGKTAFQMA 178
           K++  G  ALH ++       +LL  GADIN  N++  T    A
Sbjct: 264 KSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 90.3 bits (224), Expect = 3e-19
 Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 41/272 (15%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK------ 366
           PLH  V+ +  N  + K+LL  G NVN  D  + TPLHI  +      +  +++      
Sbjct: 40  PLHQAVEAR--NLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 367 ------------HGADVNVI---------DNQGQMPLHIAVQNGYVAIPN-----LIRHG 400
                       +  +V +          + Q    ++I  ++    I       L+ +G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 401 ANVNARNKYA-KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           A++N ++++   T LH A E K+      LL +GA V+   +    PL+ AV+ +N  IV
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAV-KIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
             LL+  A+ ++ D+ G T LH++V   ++  IL+ LL +  D+NAK  S I  G T LH
Sbjct: 218 HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK--SYI-LGLTALH 274

Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            +++S  E  +  LL+Y  D++  +    T L
Sbjct: 275 SSIKS--ERKLKLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 90.1 bits (223), Expect = 6e-19
 Identities = 85/305 (27%), Positives = 144/305 (47%), Gaps = 21/305 (6%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRL 60
           + ADVN    + +++ + A+ S      K + +  +NIN     +  S L     +++  
Sbjct: 200 YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN----KNDLSLLKAIRNEDLET 255

Query: 61  VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
             LL +    VN++D+  NT LH  +   +      ++L+   A+VN KN +G+TPL++ 
Sbjct: 256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLM 314

Query: 121 ARTG-NYKMVRVLIDHGAHTECKNHQGYNALHVA---------VGILLRKGADINVENNF 170
           A+ G + + +R LI  GA     +      LH A         V  LL  GA++N  +  
Sbjct: 315 AKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC 374

Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
            KT    A    N   I   L YG ++E      + K G  L   L       +VK +++
Sbjct: 375 DKTPIHYAAVRNNVVIINTLLDYGADIEAL----SQKIGTALHFALCGTNPYMSVKTLID 430

Query: 231 KGANVHAKDQLCKTALDIAVEHG-HLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAI 289
           +GANV++K++   T L  A +    L ++E LLD+GA V+++  I +   L I  ++  I
Sbjct: 431 RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN-IQNQYPLLIALEYHGI 489

Query: 290 VQLLL 294
           V +LL
Sbjct: 490 VNILL 494

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 225 VKLILEKGANVHAKDQ-LCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAI 282
            KL+L  GA+++ KD+    TAL  A E+   ++ E LL +GA V+      +SPLH A+
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
           +  +  IV +LL    N  + + +      PLH+ V     +  + K LL HG +VN K 
Sbjct: 210 KHYNKPIVHILLE---NGASTDARDKCGNTPLHISVGY-CKDYDILKLLLEHGVDVNAKS 265

Query: 343 D-ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
                T LH +I+S+    + LL+++GAD+N +++    PL  AV+   
Sbjct: 266 YILGLTALHSSIKSE--RKLKLLLEYGADINSLNSYKLTPLSSAVKQYL 312

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 382 LHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
           LH+A +NG +  +  L+  GA+VN  +    T LH+A    N+  +  LLEHGA V+A+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           + G   L++A    NL IV+ LL+  A++N  D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           LH+A +  N+  +  LLE GA V+         L++A    NL IV+ LL+  A+VN+ D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           + G T LHLA +  N+ I++ LL + ADIN K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 13/185 (7%)

Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDSL--QFIHSPLHLAIEKQHIAIVQLLLRRN 297
            + K + D  +E    +I + LL +GA ++       ++ LH A E +   + +LLL   
Sbjct: 135 YIDKKSKDDIIE---AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG 191

Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES-Q 356
               N+N    TN +PLH  V  K +N  +   LL +GA+ + +D    TPLHI++   +
Sbjct: 192 ---ANVNIPDKTNNSPLHHAV--KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK 246

Query: 357 CWDAVSLLVKHGADVNVIDN-QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLH 415
            +D + LL++HG DVN      G   LH ++++    +  L+ +GA++N+ N Y  TPL 
Sbjct: 247 DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK-LKLLLEYGADINSLNSYKLTPLS 305

Query: 416 IAVEQ 420
            AV+Q
Sbjct: 306 SAVKQ 310

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 39/130 (30%)

Query: 246 LDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININT 305
           L +A ++G+L++V+ LL+ GA V+      + LHLA    ++ IV+LLL           
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD-TDTALHLAARNGNLEIVKLLLE---------- 49

Query: 306 KGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
                                       HGA+VN KD +  T LH+A  +   + V LL+
Sbjct: 50  ----------------------------HGADVNAKDKDGNTALHLAARNGNLEIVKLLL 81

Query: 366 KHGADVNVID 375
           +HGAD+N+ D
Sbjct: 82  EHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           LHL  +  +    + K LL  GA+VN+ D    T LH+A  +   + V LL++HGADVN 
Sbjct: 1   LHLAAKNGNLE--LVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 374 IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN 407
            D  G   LH+A +NG + I   L+ HGA++N ++
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
           L++A +  NL +V+ LL+  A+VN  D    T LHLA +  N+ I++ LL + AD+NAK 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
             G     T LHLA  + N  ++  LL++  D+++KD
Sbjct: 59  KDG----NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 79.7 bits (197), Expect = 6e-16
 Identities = 62/232 (26%), Positives = 93/232 (40%), Gaps = 33/232 (14%)

Query: 154 VGILLRKGADINVENNFGKTAF-----QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKH 208
           V ILL  GADIN       T                  ++L L+YG NV       +   
Sbjct: 51  VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP----DNNG 106

Query: 209 GGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH--LKIVEFLLDHG 265
              LL  + +     + V+ +L+ GANV+ K+   +  L + +E     LKI++ L+D G
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166

Query: 266 ACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT 325
             ++           A  +     V  LL   +  + IN K      PLH  V   +   
Sbjct: 167 VDIN-----------AKNR-----VNYLL---SYGVPINIKDVYGFTPLHYAVYNNNPEF 207

Query: 326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ 377
              K LL  GAN N+ +    TPLHIAI +   +   LL+ +G  +  I   
Sbjct: 208 --VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 79.3 bits (195), Expect = 8e-16
 Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGANVNARNKYA 410
           AI     D    L+  G + N     G  P+ +A++     AI  L++HGA  + +    
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQV-DARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN- 468
           ++ LH AVE+ ++ A+  LL+ G    D   + G  PL++A  +  L I++ L+   A+ 
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 469 -VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
            + ++D+F  + LHLAV + ++  +E L+ +KA ++ +   G     TPL +A+   + A
Sbjct: 129 DIPNTDKF--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCG----CTPLIIAMAKGDIA 182

Query: 528 VINKLLDYNPDLDVKDKNGNTAL 550
           +   LLD   ++D   KNG  A 
Sbjct: 183 ICKMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 5/95 (5%)

Query: 50  LHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNI 108
           LH+AA   N+ LV+LLLE   DVN  D   +T LH   + +  +   V++L  + A+VN 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALH--LAARNGNLEIVKLLLEHGADVNA 56

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
           K+K+G+T LH+AAR GN ++V++L++HGA    K+
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 6/95 (6%)

Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ 272
           L    +NG+   VKL+LEKGA+V+  D    TAL +A  +G+L+IV+ LL+HGA V++  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 273 FI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTK 306
              ++ LHLA    ++ IV+LLL    +  +IN K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL---EHGADINLK 90

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
              + + LL  G N N +  +  +P+ +A++ +  +A+ LL+KHGA  +V     +  LH
Sbjct: 14  ELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELH 73

Query: 384 IAVQNGYV-AIPNLIRHGANVN-ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
            AV+ G V A+  L+  G   +    K   TPLH+A   K +  +  L+  GA  D    
Sbjct: 74  DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT 133

Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
               PL++AV M ++  +E L+  KA ++  D  G T L +A+   ++AI + LL + A+
Sbjct: 134 DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193

Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
           I+    +G       L  A+E+N   ++   +    D ++
Sbjct: 194 IDYFGKNG---CVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 18/195 (9%)

Query: 1   FDADVNAT---NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN 57
             ADVN      K  + L+          I +LL E GA++N P    G + LH+     
Sbjct: 36  AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTPLHLYLYNA 94

Query: 58  --IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDT 115
             + +++LL++   DVNA D +G T LH   S    +P  + +L    A+VN  +  G T
Sbjct: 95  TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT 154

Query: 116 PLHIAARTGN--YKMVRVLIDHGAHTECKNHQGYNALHV----------AVGILLRKGAD 163
           PL +  ++ N   +++R+LID GA     + +  + LH            V  L+R G D
Sbjct: 155 PLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD 214

Query: 164 INVENNFGKTAFQMA 178
               +  G T     
Sbjct: 215 PAATDMLGNTPLHSM 229

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 11/197 (5%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
             L+L +     A +  LL +   + ++  +    + PLH        +  + K LL  G
Sbjct: 39  LNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHS--AASKGDDKIVKLLLASG 96

Query: 336 ANVNVKDDENKTPLHIAI-----ESQCWDAVSLLVKHGA---DVNVIDNQGQMPLHIAVQ 387
           A+VN KD +  TPLH+A           +   LL++ GA     N+ D  G  PLH A  
Sbjct: 97  ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156

Query: 388 NGYVAI-PNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
           NG   I   L+  GA+ N+RN Y  T L  A +   +  +  LL+ G  +       +  
Sbjct: 157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGV 216

Query: 447 LYIAVEMHNLSIVEQLL 463
               V   N+  +  L+
Sbjct: 217 ANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 74.1 bits (182), Expect = 5e-14
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 15/150 (10%)

Query: 59  RLVRLLLEYNVDVNAVD-NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
            + +LLL Y  D+N  D + GNT LH     K +  T  E+L +  ANVNI +K  ++PL
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT--ELLLSYGANVNIPDKTNNSPL 205

Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG---------ILLRKGADINVEN 168
           H A +  N  +V +L+++GA T+ ++  G   LH++VG         +LL  G D+N ++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 169 NF-GKTAFQMAYEMKNFPAIELFLKYGVNV 197
              G TA   +  +K+   ++L L+YG ++
Sbjct: 266 YILGLTALHSS--IKSERKLKLLLEYGADI 293

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLH--LAVKIQNVA-ILECLLVNKADINAKIISGIWK 512
           +  V +LL   A+VN   ++G+T LH  L    + V  I+  LL   AD+NA    G   
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCG--- 83

Query: 513 GYTPLHLAVESNNEA-VINKLLDYNPDLDVKDKNGNTALH 551
            +TPLHL + +     VI  L+    D++ KDK G T LH
Sbjct: 84  -FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLH 122

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.9 bits (164), Expect = 8e-14
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 88  IKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGY 147
            K  +   V++L    A+VN+ +   DT LH+AAR GN ++V++L++HGA    K+  G 
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN 62

Query: 148 NALHVAVG--------ILLRKGADINVEN 168
            ALH+A          +LL  GADIN+++
Sbjct: 63  TALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 73.1 bits (179), Expect = 8e-14
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 9/195 (4%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQLLLRRNN-NNI 301
           + + +A++    + ++ L+ HGA  D     I S LH A+E+  +  V+ LL      + 
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                G T   PLHL          + K L+  GA+ ++ + +  +PLH+A+       +
Sbjct: 97  VFYKDGMT---PLHLAT--ILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151

Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK-TPLHIAVE 419
            LL+ H A +++ D  G  PL IA+  G +AI   L+  GAN++   K      L  A+E
Sbjct: 152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIE 211

Query: 420 QKNMSALNYLLEHGA 434
              +  +   ++ GA
Sbjct: 212 NNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 33/275 (12%)

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK---TNRANVNIKNKEGD 114
             +V+L +    +VN +DN  +T L T+ S        ++I+K    N A++N KN +G+
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 115 TPLHIAARTG---NYKMVRVLIDHGAHTECKNHQGYNALHV-----------AVGILLRK 160
           TPL+     G   N +++  +I++GA T   +  G+  L V            + +LL K
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIEL-FLKYGVNVEQCVCHENVKHGGQLLLHLV-- 217
           G DIN  NN  K      Y   N   I+   LK  V+    +  EN  H  + + +L   
Sbjct: 171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSL 230

Query: 218 ----RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA---CVDS 270
               +   +N +  I     +++  D+L    L  +V H + KI E+LL  G     +  
Sbjct: 231 LYDNKRFKKNILDFIF-SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE 289

Query: 271 LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININT 305
           L   ++ L  A E +   I   +L   N   N NT
Sbjct: 290 LG--NTCLFTAFENESKFIFNSIL---NKKPNKNT 319

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 71.1 bits (174), Expect = 7e-13
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
           L+K   D ++ D++G+ PLHIA   GY   +  L++H  NV+ R+    T L  A+  K+
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH 603

Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
                 L    +  D       D L  A + ++L+ +++LLK   NV+S D  G T L +
Sbjct: 604 HKIFRILYHFASISDPHA--AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV 661

Query: 483 AVKIQNVAILECLLVNKADINA 504
           A+   +V ++  L++N AD++ 
Sbjct: 662 AMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 7/90 (7%)

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239
           +  N   ++L L+ G +V       N+      L    RNG+   VKL+LE GA+V+AKD
Sbjct: 6   KNGNLELVKLLLEKGADV-------NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
           +   TAL +A  +G+L+IV+ LL+HGA ++
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 33/177 (18%)

Query: 337 NVNVKDDENKTPL-HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
           N+N  D   ++ L   AIE++  +   LL+       V    G   LH        A+  
Sbjct: 44  NINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV----GDTLLHAISLEYVDAVEA 99

Query: 396 LIRHG------------ANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDAR-- 439
           ++ H             AN    +++    T LH+A  ++N   +  LLE GA V AR  
Sbjct: 100 ILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159

Query: 440 ------TQL------GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
                 +Q       G+ PL  A  + + SIV  L +  A++ ++D  G T+LHL V
Sbjct: 160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 35/260 (13%)

Query: 318 VQRKSWNTTMFKTLLYHGANVNVKDDENKTPL-----HIAIESQCWDAVSLLVKHGADVN 372
           +QR S +T + K  +  GANVN  D+E  TPL     +I       D V +L+++GAD+N
Sbjct: 44  LQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN 103

Query: 373 VIDNQGQMPLHIAVQNGYVA----IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALN- 427
             ++ G+ PL+  + NGY+     +  +I +GA+    +K   T L + ++  +   +  
Sbjct: 104 KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEI 163

Query: 428 --YLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKAN----VNSSDQFGRTVL 480
              LLE G  ++    +   D L+   + +   I   +LK   +    +N  ++  +   
Sbjct: 164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF 223

Query: 481 HLAVKIQNVAILECLLVNKADINAKIISGIWK----------GYTPLHLAVESNNEAVIN 530
                   +  L  LL +       I+  I+           G+ PL+ +V  NN  +  
Sbjct: 224 --------MEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFE 275

Query: 531 KLLDYNPDLDVKDKNGNTAL 550
            LL    D+++  + GNT L
Sbjct: 276 YLLQLGGDINIITELGNTCL 295

Length = 489

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 31/170 (18%)

Query: 3   ADVNATNKEGITLFQQAIVSSQ--TPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRL 60
           A+VN  N +G  L    + S++    I KLL ++G +IN             A  +    
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-------------AKNR---- 174

Query: 61  VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
           V  LL Y V +N  D  G T LH   ++   +P  V+ L    AN N+ NK GDTPLHIA
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHY--AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA 232

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNF 170
               N ++ ++L+++G           +   +   +L  K  D+N     
Sbjct: 233 ILNNNKEIFKLLLNNGP----------SIKTIIETLLYFKDKDLNTITKI 272

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
           N  + + LL    + ++ D + +TPLHIA      D V +L+KH  +V++ D  G   L 
Sbjct: 537 NAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALW 596

Query: 384 IAVQNGYVAIPNLIRHGANVNARNKYAKTP-LHIAVEQKNMSALNYLLEHGAQVDARTQL 442
            A+   +  I  ++ H A  +  + +A    L  A ++ +++A+  LL+ G  VD+    
Sbjct: 597 NAISAKHHKIFRILYHFA--SISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQ 654

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANV---NSSDQFGRTVL 480
           G   L +A+   ++ +V  L+   A+V   N+ D F  T L
Sbjct: 655 GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 34/218 (15%)

Query: 5   VNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN---DPFPDDGKSCLHIAATKNIRL- 60
           +N +  E  T    AI S    I +L  + GA+IN      P    + + I A   I+L 
Sbjct: 28  INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLL 87

Query: 61  -------------------VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKT 101
                              ++ +L+  +DVN  D    T LH   +IK  D  ++++L  
Sbjct: 88  IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY--AIKKGDLESIKMLFE 145

Query: 102 NRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------- 153
             A+VNI++  G  P+HIA +   + ++++L++ GA+   K++ G + LH A        
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYAC 205

Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFL 191
           + +L+  G  I  +   G T    A  + N  AIEL +
Sbjct: 206 IKLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAIELLI 242

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 16/207 (7%)

Query: 349 LHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNAR 406
           L + I S   +A+  ++K+  + +N+  ++   PL  A+++G   I  L I+HGA++N  
Sbjct: 5   LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI 64

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
           N     PL  A++      +  L+++G           D   + +      +++ +L   
Sbjct: 65  NTKIPHPLLTAIKIGAHDIIKLLIDNGV----------DTSILPIPCIEKDMIKTILDCG 114

Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
            +VN  D   +T LH A+K  ++  ++ L    AD+N +  +G +    P+H+A++ N  
Sbjct: 115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY----PIHIAIKHNFF 170

Query: 527 AVINKLLDYNPDLDVKDKNGNTALHPS 553
            +I  LL+     +VKD NG + LH +
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNA 197

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 375 DNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
                + L +        +   +    ++ AR+   + PLH A  + +   +  LL  GA
Sbjct: 38  KLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGA 97

Query: 435 QVDARTQLGKDPLYIAV-----EMHNLSIVEQLLKFKA---NVNSSDQFGRTVLHLAVKI 486
            V+A+   G  PL++A         N+ + + LL+  A     N  D+ G T LH A   
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN 545
            +  I+E LL   AD N++   G     T L  A ++    ++  LLD    L +   N
Sbjct: 158 GDADIVELLLEAGADPNSRNSYG----VTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 61/275 (22%), Positives = 125/275 (45%), Gaps = 30/275 (10%)

Query: 289 IVQLLLRRNNNNININTKGPTNKAPL-HLVVQRKSWNTTM--FKTLLYHGANVNVKDDEN 345
           IV+L +   N   N+N        PL  ++   K +   +   K L+ +GA++N K+ + 
Sbjct: 53  IVKLFI---NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG 109

Query: 346 KTPLHIAIESQCWDA---VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA----IPNLIR 398
           +TPL+  + +   +    +  ++++GAD  ++D  G   L + +Q+ +      I  L+ 
Sbjct: 110 ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169

Query: 399 HGANVNA-RNKYAKTPLHI----AVEQKNMSALNYLLEHGAQVDARTQLGK-------DP 446
            G ++N   NK     LH      +++ +   L   +++G  ++   +  K       + 
Sbjct: 170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNS 229

Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
           L    +    +I++ +  +  ++N  D+ G   L+ +V   N  I E LL    DIN  I
Sbjct: 230 LLYDNKRFKKNILDFIFSY-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN--I 286

Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
           I+ +  G T L  A E+ ++ + N +L+  P+ + 
Sbjct: 287 ITEL--GNTCLFTAFENESKFIFNSILNKKPNKNT 319

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 4   DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
           DVN  + E  T    AI        K+L E GA++N    D+G   +HIA   N   +++
Sbjct: 116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIK 174

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
           LLLE     N  DN G + LH   + +  D   +++L  +  ++  K K G TPLH A  
Sbjct: 175 LLLEKGAYANVKDNNGESPLHN--AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI- 231

Query: 123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVA---------VGILLRKGADINVENNFGKT 173
             N   + +LI++ A    ++  G   LH A         + ILL   ADI++++N G+ 
Sbjct: 232 IHNRSAIELLINN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290

Query: 174 AFQMAYEMKN 183
               A++  N
Sbjct: 291 PIDTAFKYIN 300

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.9 bits (152), Expect = 4e-11
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 6   NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLL 64
           N ++K+     + A++ + +    LL             DG+  LH AA   + ++V+LL
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 65  LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK------TNRANVNIKNKEGDTPLH 118
           L    DVNA D  G+T LH  A         +E+ K       +    N+++++G+TPLH
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
            AA  G+  +V +L++ GA    +N  G  AL  A
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187

Length = 235

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 69/263 (26%), Positives = 128/263 (48%), Gaps = 26/263 (9%)

Query: 256 KIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIA------IVQLLLRRNNNNININTKGPT 309
           KIV+ L+D+GA V+   +I +PL   +  + I       IV+LLL+      +IN K   
Sbjct: 51  KIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLK---FGADINLKTFN 107

Query: 310 NKAPLHLVVQRKSWNTT-MFKTLLYHGANVN-VKDDENKTPLHIAIESQCW--DAVSLLV 365
             +P+   +   + N   M + LL  G NVN VK+      LH+ +ES     D + +L+
Sbjct: 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL 167

Query: 366 KHGADVNVIDNQGQM-PLHIAVQN-----GYVAIPNLIRHGANVNARNKYAKTPL----- 414
             G ++    +   + P++I ++N         I  LI+ G N+   N  +++ L     
Sbjct: 168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD 227

Query: 415 -HIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
            +  + +K    LN++L++  +++ + + G +PL I+ ++ N      LLK   ++ +  
Sbjct: 228 NNKILSKKEFKVLNFILKY-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS 286

Query: 474 QFGRTVLHLAVKIQNVAILECLL 496
           + G TVL  A+K  N+ +L  +L
Sbjct: 287 KDGDTVLTYAIKHGNIDMLNRIL 309

Length = 494

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)

Query: 16  FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLEYNVDVNAV 74
              A  +    + KLL E+GA++N     D  + LH+AA   N+ +V+LLLE+  DVNA 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN 110
           D  GNT LH   + +  +   V++L  + A++N+K+
Sbjct: 58  DKDGNTALH--LAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 27/272 (9%)

Query: 255 LKIVEFLLDHGACVDSLQFIHS-PL-----HLAIEKQHIAIVQLLLRRNNNNININTKGP 308
             IV+  ++ GA V+ L   +S PL     ++   K  + IV++L+    N  +IN K  
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILI---ENGADINKKNS 107

Query: 309 TNKAPLHLVVQRKSWNTTMFKT-LLYHGANVNVKDDENKTPLHIAIESQCW---DAVSLL 364
             + PL+ ++     N       ++ +GA+  + D +  T L + ++S      + + LL
Sbjct: 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167

Query: 365 VKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPN-----LIRHGANVNARNKYAKTPL---- 414
           ++ G D+N  +N+     LH   +     I        + +G  +N  NK  K       
Sbjct: 168 LEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYL 227

Query: 415 -HIAVEQKNMSA--LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             +  + K      L+++  +   ++   +LG +PLY +V  +N  I E LL+   ++N 
Sbjct: 228 NSLLYDNKRFKKNILDFIFSY-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI 286

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
             + G T L  A + ++  I   +L  K + N
Sbjct: 287 ITELGNTCLFTAFENESKFIFNSILNKKPNKN 318

Length = 489

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.8 bits (149), Expect = 9e-11
 Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 12/207 (5%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
               L I K  + ++ + L    +    N      K  L+L +      +     L    
Sbjct: 5   LSALLLINKCFLDLLLVALLLLLSLDLSNP--SDKKLNLYLELALLPAASLSELLLKLIV 62

Query: 336 -ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG----- 389
             ++  +D + + PLH A        V LL+  GADVN  D  G  PLH+A  NG     
Sbjct: 63  DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEG 122

Query: 390 -YVAIPNLIRHGA---NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
                  L+  GA     N R++   TPLH A    +   +  LLE GA  ++R   G  
Sbjct: 123 NIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVT 182

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSS 472
            L  A +   + +V+ LL    +++  
Sbjct: 183 ALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 20/214 (9%)

Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARN 407
           PLH A+E++  D V  L+  G +VN  D++   PLHI  +      PN +     + + N
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-----PNKLGMKEMIRSIN 94

Query: 408 K----YAKTPLHIAVEQKNMSALNYLLEH---GAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           K    Y    +  A   +N+     +L +     Q      + K      +E     I +
Sbjct: 95  KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEA---EITK 151

Query: 461 QLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
            LL + A++N  D+  G T LH A + ++  + E LL   A++N    +      +PLH 
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN----NSPLHH 207

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
           AV+  N+ +++ LL+     D +DK GNT LH S
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 480 LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL 539
           LHLA K  N+ +++ LL   AD+N           T LHLA  + N  ++  LL++  D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG------DTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 540 DVKDKNGNTALH 551
           + KDK+GNTALH
Sbjct: 55  NAKDKDGNTALH 66

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 21/228 (9%)

Query: 19  AIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNV--DVNAVD 75
           AI+  +  IA+ L + G N N    D G S + +A   ++   ++LL+++    DV   D
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYD-GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD 67

Query: 76  NLGNTVLHTVASIKTRDPTAVE-ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
               + LH   +++  D  AVE +L   +   ++  K+G TPLH+A       ++++LI 
Sbjct: 68  I--ESELHD--AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA 123

Query: 135 HGAHTECKNHQGYNALHVAV--------GILLRKGADINVENNFGKTAFQMAYEMKNFPA 186
            GA  +  N   ++ LH+AV         +L+   A +++E+  G T   +A    +   
Sbjct: 124 RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAI 183

Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
            ++ L  G N++    +  V      L + + N   + V+L +++GA+
Sbjct: 184 CKMLLDSGANIDYFGKNGCVA----ALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY-- 428
              D  G++PLH A   G   I   L+  GA+VNA++    TPLH+A    N    N   
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 429 ---LLEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
              LLE GA +D      +D   PL+ A    +  IVE LL+  A+ NS + +G T L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 483 AVKIQNVAILECLL 496
           A K   + +++ LL
Sbjct: 187 AAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 48/131 (36%)

Query: 117 LHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVEN 168
           LH+AA+ GN ++V++L++ GA  +        ALH+A          +LL  GAD+N ++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA--DVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
             G TA  +A                                       RNG+   VKL+
Sbjct: 59  KDGNTALHLA--------------------------------------ARNGNLEIVKLL 80

Query: 229 LEKGANVHAKD 239
           LE GA+++ KD
Sbjct: 81  LEHGADINLKD 91

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)

Query: 66  EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN 125
             + D N   NL      TVAS  T +   +E L   + + +I + +G TPLHIAA  G 
Sbjct: 518 GEHDDPNMASNL-----LTVAS--TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKG- 569

Query: 126 YKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFP 185
                       + +C            V +LL+   ++++ +  G TA   A   K+  
Sbjct: 570 ------------YEDC------------VLVLLKHACNVHIRDANGNTALWNAISAKHHK 605

Query: 186 AIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTA 245
              +       +       +    G LL    +     A+K +L++G NV ++D    TA
Sbjct: 606 IFRI-------LYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658

Query: 246 LDIAVEHGHLKIVEFLLDHGACVD 269
           L +A+   H+ +V  L+ +GA VD
Sbjct: 659 LQVAMAEDHVDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.2 bits (148), Expect = 6e-10
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 16  FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLLLEYNVDVNAV 74
              A+        + L + G   +D F  DG + LH+A   K + +++LL+    D +  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
           +    + LH   ++   D   +E+L  ++A ++I++  G TPL IA   G+  + ++L+D
Sbjct: 132 NTDKFSPLHL--AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD 189

Query: 135 HGAHTECKNHQGYNALHVA---------VGILLRKGADINV 166
            GA+ +     G  A             V + +++GAD N+
Sbjct: 190 SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.8 bits (136), Expect = 4e-09
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 22/177 (12%)

Query: 98  ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL 157
           +      ++  ++ +G  PLH AA  G+ K+V++L+  GA    K+  G   LH+A    
Sbjct: 58  LKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA--- 114

Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
                   +  N             N    +L L+ G +++  V +   + G   L    
Sbjct: 115 --------LNGNP---------PEGNIEVAKLLLEAGADLD--VNNLRDEDGNTPLHWAA 155

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI 274
            NG  + V+L+LE GA+ ++++    TALD A ++G +++V+ LLD G  +  L+F 
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 65/289 (22%), Positives = 125/289 (43%), Gaps = 39/289 (13%)

Query: 16  FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIA--ATKNIRLVRLLLEYNVDVNA 73
             QA+ +    + K L  RG N+N P      + LHI       + +  ++   N     
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRSINKC--- 96

Query: 74  VDNLGNTVLHTVASIKTRDPTAVEILKTNRAN-------VNIKNKEGDTPLHIAARTGNY 126
             ++  T++    +   R+    +I+ TNR         V I  K  D  +         
Sbjct: 97  --SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDII-------EA 147

Query: 127 KMVRVLIDHGAHTECKN-HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQM 177
           ++ ++L+ +GA    K+ H+G  ALH A          +LL  GA++N+ +    +    
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 178 AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHA 237
           A +  N P + + L+ G + +      +      L + +      + +KL+LE G +V+A
Sbjct: 208 AVKHYNKPIVHILLENGASTD----ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 238 KDQ-LCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEK 284
           K   L  TAL  +++    + ++ LL++GA ++SL     +PL  A+++
Sbjct: 264 KSYILGLTALHSSIKSE--RKLKLLLEYGADINSLNSYKLTPLSSAVKQ 310

Length = 477

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 51/245 (20%), Positives = 83/245 (33%), Gaps = 56/245 (22%)

Query: 267 CVDSLQFIHSPL-HLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK---- 321
           C D L    S L   AIE +++ + +LLL       N++ +G      LH +        
Sbjct: 47  CPDRLG--RSALFVAAIENENLELTELLL-------NLSCRGAVGDTLLHAISLEYVDAV 97

Query: 322 ----SWNTTMF-KTLLYHGANVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVI 374
                     F K+     AN     +     T LH+A   Q ++ V LL++ GA V   
Sbjct: 98  EAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR 157

Query: 375 DN--------------QGQMPLHIAV---QNGYVAIPNLIRHGANVNARNKYAKTPLHIA 417
                            G+ PL+ A        VA+  L    A++   +    T LH+ 
Sbjct: 158 ACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVAL--LSEDPADILTADSLGNTLLHLL 215

Query: 418 VEQKNMSALN---------YLLEHGAQVDARTQL-------GKDPLYIAVEMHNLSIVEQ 461
           V +    A           + L    ++    +L       G  PL +A +   + +   
Sbjct: 216 VMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL 275

Query: 462 LLKFK 466
            L  K
Sbjct: 276 KLAIK 280

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 21/225 (9%)

Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGG-QLLLH 215
           LL  G + N E   G +  ++A + ++  AI+L +K+G          +VK+   +  LH
Sbjct: 21  LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA-------IPDVKYPDIESELH 73

Query: 216 -LVRNGHQNAVKLILEKGANVHAKDQLCK---TALDIAVEHGHLKIVEFLLDHGACVD-S 270
             V  G   AV+ +L+      A D   K   T L +A     L I++ L+  GA  D  
Sbjct: 74  DAVEEGDVKAVEELLD--LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 271 LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
                SPLHLA+    I  ++LL+    +   ++ +      PL + + +   +  + K 
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLID---HKACLDIEDCCGCTPLIIAMAKG--DIAICKM 186

Query: 331 LLYHGANVN-VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI 374
           LL  GAN++    +     L  AIE+   D V L +K GAD N++
Sbjct: 187 LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 14/187 (7%)

Query: 27  IAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVA 86
           +  LL + G   +DP      + L +A+T N  L+  LL+  +D +  D+ G T LH  A
Sbjct: 509 VGDLLGDNGGEHDDPNMA--SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAA 566

Query: 87  SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
           S    D   V +L  +  NV+I++  G+T L  A    ++K+ R+L  H A      H  
Sbjct: 567 SKGYED--CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY-HFASIS-DPHAA 622

Query: 147 YNALHVA-----VGI---LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVE 198
            + L  A     +     LL++G +++ E++ G TA Q+A    +   + L +  G +V+
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682

Query: 199 QCVCHEN 205
           +    ++
Sbjct: 683 KANTDDD 689

Length = 823

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           LH     K  +    + LL+ G + N  DD+   PLHIA +      V++L+ HGAD N 
Sbjct: 41  LHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA 100

Query: 374 IDNQGQMPLHIAVQNGYVAIPN---LIRHGANV-NARNKYAKTPLHIAVEQKNMSALNYL 429
            D Q + PL+         I     L+++GA + N+ ++    PL +A    +      +
Sbjct: 101 CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKI 159

Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHN--LSIVEQLLKFKANVNSSDQFGRTVLHLAVK-- 485
           +  G +     + GK+ ++  +   N   S +  ++K   + +  D  G T LH+     
Sbjct: 160 MSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT 219

Query: 486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA-VINKLL 533
           ++NV I+  LL+   D+N +       G +PL L +++ + A +INKLL
Sbjct: 220 VKNVDIIN-LLLPSTDVNKQNKF----GDSPLTLLIKTLSPAHLINKLL 263

Length = 446

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 98  ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
           +L+    ++N  +  G+TPLH+AA+ G  ++V+ L+  G     ++  G  AL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 331 LLYHG-ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
           LL HG  ++N  D    TPLH+A +    + V  L+K G D+N+ D+ G   L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
           A+    +     LL+ G   +     G  P+ +A++  +   ++ L+K  A  +      
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
            + LH AV+  +V  +E LL      +         G TPLHLA       ++  L+   
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYK---DGMTPLHLATILKKLDIMKLLIARG 125

Query: 537 PDLDVKDKNGNTALH 551
            D D+ + +  + LH
Sbjct: 126 ADPDIPNTDKFSPLH 140

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLL 262
            L     +G    VK +LEKG +++  D+   TAL IA E+G+L++++ LL
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 274 IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKS---WNTTMFKT 330
              PLH A  K    IV+LLL    +  ++N K      PLHL     +    N  + K 
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLA---SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 331 LLYHGA---NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
           LL  GA     N++D++  TPLH A  +   D V LL++ GAD N  ++ G   L  A +
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK 189

Query: 388 NGYVA-IPNLIRHGANVNARNK 408
           NG +  +  L+  G +++    
Sbjct: 190 NGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV-----KIQNVAI 491
            AR   G+ PL+ A    +  IV+ LL   A+VN+ D  G T LHLA         N+ +
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            + LL   AD++   +     G TPLH A  + +  ++  LL+   D + ++  G TAL 
Sbjct: 127 AKLLLEAGADLDVNNLRD-EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185

Query: 552 PS 553
           P+
Sbjct: 186 PA 187

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 3  ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
          ADVN  + +  T    A  +    I KLL E GA++N     DG + LH+AA   N+ +V
Sbjct: 21 ADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD-KDGNTALHLAARNGNLEIV 77

Query: 62 RLLLEYNVDVNAVD 75
          +LLLE+  D+N  D
Sbjct: 78 KLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 77/307 (25%), Positives = 139/307 (45%), Gaps = 34/307 (11%)

Query: 186 AIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ-NAVKLILEKGANVHAK----DQ 240
           A+E  L+ G +V     +E  +    LLL+L R   +   VKL+++ GA+V+ K      
Sbjct: 18  ALEFLLRTGFDV-----NEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETP 72

Query: 241 LCKTALDIAV-EHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLL--LR 295
           LC    +  +  +   KIV+ LL  GA ++ L+  +  SP+   I   +I    +L  L 
Sbjct: 73  LCAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLL 131

Query: 296 RNNNNIN--INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDD-ENKTPLHIA 352
               N+N   N++G      LH+ ++  S    + K LL  G N+  K      TP++I 
Sbjct: 132 SKGINVNDVKNSRGYN---LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY 188

Query: 353 IESQCWDAVSL-----LVKHGADVNVIDNQGQMPL------HIAVQNGYVAIPNLIRHGA 401
           + +   D +S+     L+K G ++   +N  +  L      +  +      + N I    
Sbjct: 189 LRNDI-DVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYI 247

Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
            +N ++K    PL I+ +  N  A NYLL+ G  +   ++ G   L  A++  N+ ++ +
Sbjct: 248 KINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNR 307

Query: 462 LLKFKAN 468
           +L+ K  
Sbjct: 308 ILQLKPG 314

Length = 494

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
           T LH A  S   + V  L++ G D+N  D  G   LHIA +NG + +
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)

Query: 27  IAKLLAERGANINDP-------FPDDGKSCLHIAATKNI----RLVRLLLEYNVDVNAVD 75
           +  LLA + A I+D        +   GK C+HI +  +       ++LL+E+  D+N  +
Sbjct: 30  VTDLLAFKNA-ISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE 88

Query: 76  NL-GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
            + GNT LH     +  +  A  +      N+ I N    TP ++A    + KM+ +L  
Sbjct: 89  RVFGNTPLHIAVYTQNYE-LATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRA 147

Query: 135 HGAHTECKN 143
            GA  +CK 
Sbjct: 148 KGA--QCKV 154

Length = 154

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 359 DAVS--LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLH 415
           DAV   +L+  GAD N  D  G+ PLHIA  NG+V +   L+  GA+    +K  KTPL 
Sbjct: 94  DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE 153

Query: 416 IAVEQKNMSALNYLLEH 432
           +A E      +  L  H
Sbjct: 154 LAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
           T LH A     +  + YLLE G  ++   + G   L+IA E  NL +++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 53/241 (21%), Positives = 106/241 (43%), Gaps = 28/241 (11%)

Query: 301 ININTKG-PTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH--IAIESQC 357
           +N+N     T    LH  +     +  + + L  +G NVN++++   TPLH  +   + C
Sbjct: 167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVC 226

Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP---- 413
              +  +++ G D+++    G  P+   + N     P +          NK    P    
Sbjct: 227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH 286

Query: 414 LHIAVEQK-NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS--IVEQLLKFKANVN 470
            +I + +  ++S +   L+ G ++  +   G+  L+  +  HN+S  I++ L ++  ++N
Sbjct: 287 SYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN 346

Query: 471 SSDQFGRTVLHLAVKIQ--------------NVAILECLLVNKADINAKIISGIWKGYTP 516
             D  G TVLH  + +                + +++CL+   ADI A  ++ +  GYTP
Sbjct: 347 EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA--VNCL--GYTP 402

Query: 517 L 517
           L
Sbjct: 403 L 403

Length = 764

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
            L+ A     L +V+ LL+   ++N +D+ G T LH+A +  N+ +L+ LL
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
           S +    + LL  GA+ N +D + +TPLHIA  +     V +L++ GAD  ++D  G+ P
Sbjct: 92  SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151

Query: 382 LHIAVQNGYVAIPNLI-RH 399
           L +A +NG+  +  L+ RH
Sbjct: 152 LELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 11/163 (6%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGA--NINDPFPDDGKSCLHIAAT-KN 57
           + ADVN  +  G      AI  +   I KLL E+GA  N+ D   ++G+S LH AA   +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD---NNGESPLHNAAEYGD 202

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
              ++LL+++   +      G T LH  A I  R  +A+E+L  N + +N ++ +G TPL
Sbjct: 203 YACIKLLIDHGNHIMNKCKNGFTPLHN-AIIHNR--SAIELLINNAS-INDQDIDGSTPL 258

Query: 118 HIAARTG-NYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR 159
           H A     +  ++ +L+ H A    K+++G N +  A   + +
Sbjct: 259 HHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINK 301

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
           G T LH  A+I  R      +L+    ++N  +++G+T LHIAA  GN +++++L+
Sbjct: 1   GRTALH-KAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 25/33 (75%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           +G+TPLH+AAR G+ ++V++L++ GA    ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 46  GKSCLH---IAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVAS----IKTRDPT---- 94
           G++CLH   +    +  +++LL EY  D+N  DN+GNTVLHT  S    +   DP     
Sbjct: 317 GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDND 376

Query: 95  ----AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
                ++ L +  A++   N  G TPL     T    M   +ID
Sbjct: 377 IRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIID 420

Length = 764

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK-DDENKTPLHIAI---ESQCW 358
           +N      + P+   +++   N  + K L+ +GA+VN K  D N + LH  +   ++   
Sbjct: 44  VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP 103

Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI---PNLIRHGANVNARNKYAKTPLH 415
           + + +L+  G+ +   D  G+  LH+ + N  V I     LI  G +   ++      L+
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163

Query: 416 IAV----EQKNMSALNYLLEHGAQVDARTQLGKDPLYI 449
             +    ++K     ++L   G  ++   + G +   +
Sbjct: 164 SYILFHSDKK---IFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 364 LVKHG-ADVNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIA 417
           L++HG  D+N  D  G  PLH+A + G +  +  L++ G ++N R+    T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
           LL    +D+NA D  GNT LH   + K      V+ L     ++N+++ +G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHL--AAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 46/160 (28%)

Query: 11  EGITLFQQAIVSSQTPIAKLLAERGANIN-----DPF-PDDGKSCLH--------IAATK 56
            GIT    A       I KLL ERGA++      D F    G    +         A   
Sbjct: 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186

Query: 57  NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASI-----------------------KTRDP 93
           +  +V LL E   D+   D+LGNT+LH +                          K RD 
Sbjct: 187 SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS 246

Query: 94  TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
             +E+         I N +G TPL +AA+ G   + R+ +
Sbjct: 247 KELEV---------ILNHQGLTPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQ-FIHSPLHLAIEKQHIAIVQLLL 294
           TAL  A   G L++V++LL+ G  ++      ++ LH+A E  ++ +++LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           L  L  +G     +++L  GA+ + +D   +T L IA  +GH+++V  LL+ GA    L 
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGP 308
           +   +PL LA E     +VQLL R +  +  +     
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK 182

Length = 664

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 56/347 (16%)

Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHL--A 281
           V+ +L +G + +  D      L IA +  + +IV  LL HGA  ++  +   +PL+    
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114

Query: 282 IEKQHIAIVQLLLR---RNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANV 338
            + + I  + LL++   + NN+++    GP        ++     +  +FK ++  G   
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGP--------LLACTDPSERVFKKIMSIGFEA 166

Query: 339 NVKDDENKTPLHIAIESQCWDA--VSLLVKHGADVNVIDNQGQMPLHI----AVQNGYVA 392
            + D   K  +H  + S    A  +S ++K G   +  D+ G  PLHI     V+N  V 
Sbjct: 167 RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN--VD 224

Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVE--------QKNMSALNYLLEHGAQV-------- 436
           I NL+    +VN +NK+  +PL + ++         K +S  N + +    +        
Sbjct: 225 IINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDD 284

Query: 437 ------DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVA 490
                 D   Q       +AVE+ ++  V+ LL        +D      ++ AV  +   
Sbjct: 285 VLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL-------DNDIICEDAMYYAVLSEYET 337

Query: 491 ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           +++ LL N   +++ +      G+T +   V  NN  +++KL+ +NP
Sbjct: 338 MVDYLLFNHFSVDSVV-----NGHTCMSECVRLNNPVILSKLMLHNP 379

Length = 446

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 26/82 (31%), Positives = 39/82 (47%)

Query: 383 HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
            +A     V    L+  GA+ N R+   +TPLHIA    ++  +  LLE GA      + 
Sbjct: 88  QLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKD 147

Query: 443 GKDPLYIAVEMHNLSIVEQLLK 464
           GK PL +A E     +V+ L +
Sbjct: 148 GKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
            E+H+L++ +  L         D    + L       N A+LE LL  KA ++  I  G 
Sbjct: 502 KELHDLNVGD--LLGDNGGEHDDPNMASNLLTVASTGNAALLEELL--KAKLDPDI--GD 555

Query: 511 WKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            KG TPLH+A     E  +  LL +  ++ ++D NGNTAL
Sbjct: 556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 46/174 (26%), Positives = 65/174 (37%), Gaps = 45/174 (25%)

Query: 163 DINVENNFGKTA-FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
           +IN  +  G++A F  A E +N    EL L                  G  LLH +   +
Sbjct: 44  NINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV----------GDTLLHAISLEY 93

Query: 222 QNAVKLIL--------EKGANVHAKDQLCK-------TALDIAVEHGHLKIVEFLLDHGA 266
            +AV+ IL        + G    A DQ          TAL +A    + +IV+ LL+ GA
Sbjct: 94  VDAVEAILLHLLAAFRKSGPLELANDQ-YTSEFTPGITALHLAAHRQNYEIVKLLLERGA 152

Query: 267 CV---------------DSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININT 305
            V               DS     SPL+ A      +IV LL     +  +I T
Sbjct: 153 SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE---DPADILT 203

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           G T LH AA +G  ++V+ L++ G      +  G  ALH+A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAA 42

Length = 54

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 23/119 (19%)

Query: 339 NVKDDENKTPLHIAIE-----SQCWDAVS------------LLVKHGADVNVIDNQ-GQM 380
           N   DEN+   ++ +E      QC   VS            LL++ GAD+N  +   G  
Sbjct: 38  NAISDENR---YLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94

Query: 381 PLHIAV--QNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD 437
           PLHIAV  QN  +A     + G N+   N   KTP ++A E+ +   +N L   GAQ  
Sbjct: 95  PLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153

Length = 154

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 210 GQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
           G+  LH+   NGH   V+++LE GA+    D+  KT L++A E+G  ++V+ L  H  C 
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCH 174

Query: 269 DSL 271
             L
Sbjct: 175 FEL 177

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 396 LIRHG-ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
           L+ HG  ++NA +    TPLH+A +   +  + +LL+ G  ++ R   G   L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           G T LH A  S    ++  LL+   D++  D++GNTALH
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALH 39

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 51  HIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN 110
            +AA+ +    R+LL    D N  D  G T LH +A         V +L    A+  + +
Sbjct: 88  QLAASGDAVGARILLTGGADPNCRDYDGRTPLH-IACANGH-VQVVRVLLEFGADPTLLD 145

Query: 111 KEGDTPLHIAARTGNYKMVRVLIDH 135
           K+G TPL +A   G  ++V++L  H
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 53/170 (31%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           +PLH+A  K +   V +LL+                                      H 
Sbjct: 560 TPLHIAASKGYEDCVLVLLK--------------------------------------HA 581

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSL-------LVKHGADVNVIDNQGQMPLHIAVQN 388
            NV+++D    T L        W+A+S        ++ H A ++     G +    A +N
Sbjct: 582 CNVHIRDANGNTAL--------WNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRN 633

Query: 389 GYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
              A+  L++ G NV++ +    T L +A+ + ++  +  L+ +GA VD 
Sbjct: 634 DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRL 60
            ADVNA +K+G T    A  +    + KLL + GA++N     DG++ LH+AA   ++ +
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD-KDGRTPLHLAAKNGHLEV 121

Query: 61  VRLLL 65
           V+LLL
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 33/146 (22%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLV 61
            ADVNA + +G T    A ++   P                              NI + 
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPE----------------------------GNIEVA 127

Query: 62  RLLLEYNV---DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
           +LLLE        N  D  GNT LH  A     D   VE+L    A+ N +N  G T L 
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD--IVELLLEAGADPNSRNSYGVTALD 185

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNH 144
            AA+ G  ++V++L+D G H      
Sbjct: 186 PAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 511 WKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
             G TPLHLA +     ++  LL    DL+++D +G TAL 
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 462 LLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
           L+++ A++N  ++ FG T LH+AV  QN  +    L N+  +N +I++  +K  TP ++A
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELAT-WLCNQPGVNMEILNYAFK--TPYYVA 133

Query: 521 VESNNEAVINKL 532
            E ++  ++N L
Sbjct: 134 CERHDAKMMNIL 145

Length = 154

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 375 DNQGQMPLHIAVQNGYVAIPN----LIRHGANVNARN-KYAKTPLHIAVEQKNMSALNYL 429
           +  G+  +HI               L+  GA++N +   +  TPLHIAV  +N     +L
Sbjct: 52  NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111

Query: 430 LEH-GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
               G  ++      K P Y+A E H+  ++  L  
Sbjct: 112 CNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRA 147

Length = 154

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDN 376
           TPLH+A  +   + V LL++ GADVN  D 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
            G TPLHLA  + +  V+  LL+   D++ +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 26/123 (21%)

Query: 75  DNLGNTVLHTVASIKTRDPT-AVEILKTNRANVNIKN-KEGDTPLHIAARTGNYKMVRVL 132
           D+ G    H VA     +    +E+L    A++N +    G+T LHIAA T NY++   L
Sbjct: 54  DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWL 113

Query: 133 IDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
                   C+                + G ++   N   +TA+ +AY+M++   +E+   
Sbjct: 114 --------CR----------------QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA 149

Query: 193 YGV 195
            G 
Sbjct: 150 NGA 152

Length = 166

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 10  KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLLLEYN 68
           K+G+T    A +  +  I KLL  RGA+ + P   D  S LH+A    +I+ + LL+++ 
Sbjct: 100 KDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDHK 158

Query: 69  VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGD-TPLHIAARTGNYK 127
             ++  D  G T L  + ++   D    ++L  + AN++   K G    L  A       
Sbjct: 159 ACLDIEDCCGCTPL--IIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID 216

Query: 128 MVRVLIDHGA 137
           +VR+ I  GA
Sbjct: 217 IVRLFIKRGA 226

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 40/195 (20%)

Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGANVNARNKYAKTPLHI--A 417
           V  L+  G   N  D+ G  PLHIA + N    +  L+ HGA+ NA +K  KTPL+    
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114

Query: 418 VEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
            + + +  +N L+++GA+++    + G  PL                   A  + S++  
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL------------------ACTDPSERVF 156

Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
           + ++ +  +                  A+I+    K +   HL  ++   + I+ ++   
Sbjct: 157 KKIMSIGFE------------------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG 198

Query: 537 PDLDVKDKNGNTALH 551
                 D +GNT LH
Sbjct: 199 ISPSKPDHDGNTPLH 213

Length = 446

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 55  TKNIRLVRLLLEYNVDVNAVDNLGNT-VLHTVASIKTRDPTAVEILKTNRANVNIKNKEG 113
           +KN+ + R +L+      A++  GN  +LH    IK  D   VE L     + N  + +G
Sbjct: 19  SKNLDVFRNMLQ------AIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDG 72

Query: 114 DTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGYNALHVA---------VGILLRKGAD 163
           + PLHIA++  N ++V +L+ HGA    C         +++         + +L++ GA 
Sbjct: 73  NYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK 132

Query: 164 IN 165
           IN
Sbjct: 133 IN 134

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 381 PLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL 430
            LH A  +G +  +  L+  G ++N  ++   T LHIA E  N+  L  LL
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVD 269
           T L +A  +GHL++V+ LL+ GA V+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 42/162 (25%)

Query: 27  IAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVA 86
           I K L E GA++N    D+  S LH             L +N +V               
Sbjct: 68  ILKFLIENGADVNFKTRDNNLSALH-----------HYLSFNKNVE-------------- 102

Query: 87  SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM--VRVLIDHGAHTECKNH 144
                 P  ++IL  + +++  ++++G   LH+     N ++  +++LID G     K+ 
Sbjct: 103 ------PEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156

Query: 145 QGYNALHV---------AVGILLRKGADINVENNFGKTAFQM 177
              N L+              L   G DIN  N  G   + +
Sbjct: 157 DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 44  DDGKSCLHIAATKN-----IRLVRLLLEYNVDVNAVDNL-GNTVLHTVASIKTRDPTAVE 97
           D G+ C+HIAA K+       ++  L+E   D+NA + L G+T LH  A    RD    E
Sbjct: 58  DAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAH--RRDHDLAE 115

Query: 98  ILKTNRANVNIK--NKEGDTPLHIAARTGNYKMVRVL 132
            L   +  +++   N +  +P  +A    +  M+++L
Sbjct: 116 WL-CCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL 151

Length = 169

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 48 SCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVAS 87
          + LH AA    + LV+ LLE  VD+N  D  GNT LH  A 
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           LL  GA  + R   G+ PL+IA    ++ +V  LL+F A+    D+ G+T L LA +   
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Query: 489 VAILECLL 496
             +++ L 
Sbjct: 161 REVVQLLS 168

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDART 440
           TPLH+A    ++  +  LLE GA V+AR 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 21/26 (80%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGA 137
           +G TPLH+AA  GN ++V++L+D GA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 92  DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
           D     IL T  A+ N ++ +G TPLHIA   G+ ++VRVL++ GA     +  G   L 
Sbjct: 94  DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE 153

Query: 152 VAVGILLRKGADINVENNFGKTA 174
           +A             EN F +  
Sbjct: 154 LA------------EENGFREVV 164

Length = 664

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 33/134 (24%)

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDP-TAVEILKTNRANVNIKN-KEGDTPLHIA 120
           L+LEYN         G   +H V++    DP   +++L    A++N K    G+TPLHIA
Sbjct: 47  LVLEYNRH-------GKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIA 99

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYE 180
             T NY++   L        C                 + G ++ + N   KT + +A E
Sbjct: 100 VYTQNYELATWL--------CN----------------QPGVNMEILNYAFKTPYYVACE 135

Query: 181 MKNFPAIELFLKYG 194
             +   + +    G
Sbjct: 136 RHDAKMMNILRAKG 149

Length = 154

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENN 169
            +AA +G+    R+L+  GA   C+++ G   LH+A        V +LL  GAD  + + 
Sbjct: 88  QLAA-SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHEN 205
            GKT  ++A E      ++L  ++        CH  
Sbjct: 147 DGKTPLELAEENGFREVVQLLSRH------SQCHFE 176

Length = 664

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 382 LHIAVQNGYVAIPNLI-RHGANVNARNKYAK----TPLHIAVEQKNMSALNYLLEHGAQV 436
           L+ +++  Y  I + I + GA+  A    ++     PL  A++  N  A   L+ +GA V
Sbjct: 37  LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96

Query: 437 DARTQLGK-DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           +   +  K  PLYI+V    L  +E LL + A++N       T + LA+ I N
Sbjct: 97  NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN 149

Length = 300

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 15/27 (55%), Positives = 24/27 (88%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAH 138
           +G+TPLH+AAR GN ++V++L++HGA 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 62/287 (21%), Positives = 98/287 (34%), Gaps = 45/287 (15%)

Query: 38  INDPFPDDGKSCLHIAATKNIRLVRLLLE--YNVDVNAVDNLGNTVLHTVASIKTRDPTA 95
              P  D+ K+ L  A   ++  V   LE    +++N  D LG + L   A I+  +   
Sbjct: 10  EESPLSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA-IENENLEL 68

Query: 96  VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
            E+L             GDT LH A        V  ++ H         +    L +A  
Sbjct: 69  TELLLNLSCRG----AVGDTLLH-AISLEYVDAVEAILLH----LLAAFRKSGPLELAND 119

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVE-QCVCHENVKHGGQLLL 214
                      E   G TA  +A   +N+  ++L L+ G +V  +      VK  G    
Sbjct: 120 QYTS-------EFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF 172

Query: 215 HLVRN--------GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIV-------- 258
           +   +        G  + V L+ E  A++   D L  T L + V     K          
Sbjct: 173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQM 232

Query: 259 -EFLLDHGA-CVDSLQFIH-------SPLHLAIEKQHIAIVQLLLRR 296
             F L       DS +          +PL LA ++  I + +L L  
Sbjct: 233 YNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 59/198 (29%)

Query: 15  LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAV 74
           LF  AI +    + +LL              G + LH  +          LEY      V
Sbjct: 56  LFVAAIENENLELTELLLN-----LSCRGAVGDTLLHAIS----------LEY------V 94

Query: 75  DNLGNTVLHTVASIKTRDPT--AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
           D +   +LH +A+ +   P   A +   T+     I      T LH+AA   NY++V++L
Sbjct: 95  DAVEAILLHLLAAFRKSGPLELANDQ-YTSEFTPGI------TALHLAAHRQNYEIVKLL 147

Query: 133 IDHGAHT-------ECKNHQGYNALHVA---------------VGILLRKGADINVENNF 170
           ++ GA              QG ++ +                 V +L    ADI      
Sbjct: 148 LERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL----- 202

Query: 171 GKTAFQMAYEMKNFPAIE 188
             TA  +   + +   +E
Sbjct: 203 --TADSLGNTLLHLLVME 218

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 14 TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLL 65
          T   +A +S +  + K L E+G +IN    +DG + LHIAA   N+ +++LLL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 97/469 (20%), Positives = 170/469 (36%), Gaps = 105/469 (22%)

Query: 57  NIRLVRL-LLEYNVDVNAVD------NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK 109
           N R + L L++Y VDV  V+        G  +LH        D   +E L  N  NVN++
Sbjct: 149 NTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ 208

Query: 110 NKEGDTPLHIAARTGNY--KMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVE 167
           N    TPLH    TGN    +++ +I+ G   + K   G + +   +  +     +IN E
Sbjct: 209 NNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINID----NINPE 264

Query: 168 NNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKL 227
                       ++KN P I                          + L RN   + V  
Sbjct: 265 ITNIYIESLDGNKVKNIPMIL----------------------HSYITLARNIDISVVYS 302

Query: 228 ILEKGANVHAKDQLCKTALD--IAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
            L+ G  +H KD   +T L   I   +    I++ L ++G  ++      ++ LH  +  
Sbjct: 303 FLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSM 362

Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
             +++V +L    +N+I ++                      + + L+  GA++   +  
Sbjct: 363 --LSVVNILDPETDNDIRLD----------------------VIQCLISLGADITAVNCL 398

Query: 345 NKTPL------------HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
             TPL            +  I+    D V  +VKH    +++      P  I        
Sbjct: 399 GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYN 458

Query: 393 IP----------------NLIRHGANVNARNK-----YAKTPLHIAVEQKN-----MSAL 426
           IP                + + H A +   N         TPLH+++         M + 
Sbjct: 459 IPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSF 518

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLS-----IVEQLLKFKANVN 470
            YLL     ++  T+ G  PL + +  + LS     IV+ +L  + NV+
Sbjct: 519 VYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD 567

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 45 DGKSCLHIAA-TKNIRLVRLLLEYNVDVNAVDN 76
          DG + LH+AA   ++ +V+LLLE   DVNA D 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 272 QFIHSPLHLAIEKQHIA--IVQLLLRRNNNNININTKGPTNKAPLHLVVQ-RKSWNTTMF 328
               +P+   +EK  +   I++ L+  N  ++N  T+   N + LH  +   K+    + 
Sbjct: 49  DLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRD-NNLSALHHYLSFNKNVEPEIL 106

Query: 329 KTLLYHGANVNVKDDENKTPLHIAIE--SQCWDAVSLLVKHGADVNVIDNQGQMPLH--I 384
           K L+  G+++  +D++ K  LH+ +   +   + + LL+  G      D      L+  I
Sbjct: 107 KILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI 166

Query: 385 AVQNGYVAIPNLIRHGANVNARNKYAKTPLHI 416
              +       L   G ++N  NK       +
Sbjct: 167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 403 VNARNKYAKTPLHIAVEQKNMSA--LNYLLEHGAQVDARTQ-LGKDPL--YIAVEMH-NL 456
           VN  N   +TP+   +E+  ++   L +L+E+GA V+ +T+      L  Y++   +   
Sbjct: 44  VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP 103

Query: 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI 491
            I++ L+   +++   D+ G+ +LH+ +   NV I
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRI 138

Length = 209

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           LS +   L +  ++N  D+ G T+LH AV+    +++  LL + +D+N +  +    GYT
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNN----GYT 487

Query: 516 PLHLAV-ESNNEAVINKLLDYNPDLD 540
            + +A+ ES N  ++  LL + P LD
Sbjct: 488 CIAIAINESRNIELLKMLLCHKPTLD 513

Length = 661

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 429 LLEHGAQVDARTQL-GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
           LLEHG      T   G  PL++A +   L +V+ LLK   ++N  D  G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
           L     ++N++D  G T LHLA K   + +++ LL    D+N +       G T L LA
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD----GLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
           GRT LH A     + +++ LL    DIN     G     T LH+A E+ N  V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDG----NTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
            G TPLHLA E+ N  V+  LLD   D++ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           +  TPLH+A  +   + V LL++HGAD+N 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 53/282 (18%), Positives = 110/282 (39%), Gaps = 58/282 (20%)

Query: 299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC- 357
             + ++ K    +  LH  + R + +T + K L  +G ++N  D+   T LH  +     
Sbjct: 306 PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSV 365

Query: 358 -------------WDAVSLLVKHGADVNVIDNQGQMPL--HIAVQNGYV----------- 391
                         D +  L+  GAD+  ++  G  PL  +I     Y+           
Sbjct: 366 VNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD 425

Query: 392 AIPNLIRHGANVNARNKYAKTP--LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI 449
            + N+++H    +   +   TP  +H  + + N+    Y  E+      +          
Sbjct: 426 KVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIH-------- 477

Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILEC-----LLVNKADINA 504
             ++++ +I+E     + N    +  G T LH+++     A +       LL  + +IN 
Sbjct: 478 --DVYHCAIIE-----RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI 530

Query: 505 KIISGIWKGYTPLHLAVESNNEA-----VINKLLDYNPDLDV 541
              +G+    TPL L + +N  +     ++  +LD  P++D+
Sbjct: 531 PTKNGV----TPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI 568

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 377 QGQMPLHIAVQNGYVAIPN-LIRHGANVNARNK 408
            G  PLH+A +NG++ +   L+  GA+VNAR+K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 445 DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH--LAVKIQNVAILECLLVNKADI 502
           +PL+  VE  ++  V++ +KF   VN  +    T +   L     NV IL+ L+ N AD+
Sbjct: 23  NPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV 79

Query: 503 NAKIISGIWKGYTPLH--LAVESN-NEAVINKLLDYNPDLDVKDKNGNTALH 551
           N K         + LH  L+   N    ++  L+D    +  +D++G   LH
Sbjct: 80  NFKTRD---NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLH 128

Length = 209

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 29  KLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLLL-EYNVDVNAVDNLGNTVLHTVA 86
           +LL   GA+IN      G + LHIAA TKN  L   L  +  V++ A++    T  H   
Sbjct: 77  ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHI-- 134

Query: 87  SIKTRDPTAVEILKTNRA----NVNIKNKEGD 114
           + K RD   +EIL+ N A     ++I   +  
Sbjct: 135 AYKMRDRRMMEILRANGAVCDDPLSIGLSDET 166

Length = 166

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIA-ATKNIRL 60
              +N  +  G T    A+ ++     K L + GAN N      G + LHIA    N  +
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEI 240

Query: 61  VRLLLEYNVDVNAVDN----LGNTVLHTVASIK 89
            +LLL     +  +        +  L+T+  IK
Sbjct: 241 FKLLLNNGPSIKTIIETLLYFKDKDLNTITKIK 273

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
            +  I++N        PLHL  +       + + LL  G ++N++D +  T L +A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYG--ALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 27/208 (12%)

Query: 364 LVKHGADVNVID------NQGQMPLHIAVQNGYVAIPNL---IRHGANVNARNKYAKTPL 414
           L+K+  DV +++        G   LH  + N YV I  L     +G NVN +N +  TPL
Sbjct: 157 LIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPL 216

Query: 415 HIAVEQKNMSA--LNYLLEHGAQVDARTQLGKDPL--YIAVEMHNLSIVEQLLKFKANVN 470
           H  +   N+ A  +  ++E G  +D +   G  P+  YI       +I  ++        
Sbjct: 217 HTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINID---NINPEITNIYIESL 273

Query: 471 SSDQFGRT--VLHLAVKI-QNVAI--LECLLVNKADINAKIISGIWKGYTPLHLAVESNN 525
             ++      +LH  + + +N+ I  +   L     ++ K  +G     T LH  +  +N
Sbjct: 274 DGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG----RTCLHQYILRHN 329

Query: 526 --EAVINKLLDYNPDLDVKDKNGNTALH 551
               +I  L +Y  DL+  D  GNT LH
Sbjct: 330 ISTDIIKLLHEYGNDLNEPDNIGNTVLH 357

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAK 505
           G T LHLA +  ++ +++ LL   AD+NA+
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	553
KOG4177|consensus	1143		100.0
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
KOG0509|consensus	600		99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4369|consensus	2131		99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369|consensus	2131		99.96
KOG0502|consensus	296		99.95
KOG0502|consensus	296		99.94
KOG0507|consensus	854		99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0507|consensus	854		99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0514|consensus	452		99.91
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0505|consensus	527		99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0505|consensus	527		99.88
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0514|consensus	452		99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
KOG0512|consensus	228		99.84
KOG0512|consensus	228		99.83
KOG0195|consensus	448		99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0195|consensus	448		99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG3676|consensus	782		99.73
KOG3676|consensus	782		99.71
KOG4214|consensus	117		99.7
KOG4214|consensus	117		99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG0515|consensus	752		99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG0515|consensus	752		99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
KOG1710|consensus	396		99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
KOG1710|consensus	396		99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PF13606	30	Ank_3: Ankyrin repeat	98.96
PF13606	30	Ank_3: Ankyrin repeat	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.87
KOG0783|consensus	1267		98.86
KOG0818|consensus	669		98.83
KOG0782|consensus	1004		98.82
KOG0782|consensus	1004		98.81
KOG0818|consensus	669		98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.77
KOG0783|consensus	1267		98.74
KOG0506|consensus	622		98.73
KOG0506|consensus	622		98.72
KOG2384|consensus	223		98.69
KOG3609|consensus	822		98.63
KOG0705|consensus	749		98.51
KOG0705|consensus	749		98.49
KOG3609|consensus	822		98.43
KOG2384|consensus	223		98.37
KOG0522|consensus	560		98.26
KOG0511|consensus	516		98.25
KOG0520|consensus	975		98.24
KOG0520|consensus	975		98.21
KOG0522|consensus	560		98.2
KOG0511|consensus	516		98.18
KOG0521|consensus	785		97.98
KOG0521|consensus	785		97.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.7
KOG2505|consensus	591		97.43
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.06
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.01
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.72
KOG2505|consensus	591		96.7
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.35
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.85
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.5
PLN03077	857	Protein ECB2; Provisional	93.17
PLN03218	1060	maturation of RBCL 1; Provisional	91.89
PLN03077	857	Protein ECB2; Provisional	91.35
PLN03218	1060	maturation of RBCL 1; Provisional	90.76

>KOG4177|consensus

Probab=100.00  E-value=2.5e-65  Score=500.94  Aligned_cols=532  Identities=33%  Similarity=0.486  Sum_probs=484.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      .+...+.|.||+|.|+-.|+.++++.|+++|+.++.. ..+|.+|||.|+++|+ ++++.|+..|+.++.++..+.||||
T Consensus        47 ~~~~sk~~~~pl~~aa~~~~~~v~~~ll~~~a~v~~~-~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh  125 (1143)
T KOG4177|consen   47 ADVDSKSGFTPLHIAAHYGNENVAELLLNRGAIVNAT-ARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLH  125 (1143)
T ss_pred             cchhcccccCHHHHHhhhhhhhhhhhhhccccccCcc-cccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchh
Confidence            3444558899999999999999999999999998887 8889999999999999 9999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHH-----------------------HHcCCHHHHHHHHhcCCCCC
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA-----------------------ARTGNYKMVRVLIDHGAHTE  140 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A-----------------------~~~g~~~iv~~Ll~~~~~~~  140 (553)
                      .|+..  ++.+++.+|+..+++++.+|..|.||+++|                       +.+++.+++++++...++++
T Consensus       126 ~aa~~--g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~  203 (1143)
T KOG4177|consen  126 CAARK--GHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPN  203 (1143)
T ss_pred             hhccc--ccHHHHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCcc
Confidence            99888  999999999999999999999998888665                       55778888888999999999


Q ss_pred             CCCCCCCcHHHHH--------HHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchh
Q psy11230        141 CKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL  212 (553)
Q Consensus       141 ~~~~~~~t~l~~~--------~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  212 (553)
                      ..+.++.||+|.+        +++++..|.++...+..+.+|++.|+..|+.+++.+++.+++.++..     .....++
T Consensus       204 a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~-----~vr~~tp  278 (1143)
T KOG4177|consen  204 ASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVS-----TVRGETP  278 (1143)
T ss_pred             ccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcc-----cccccCc
Confidence            9999999999999        45788999999999999999999999999999999999999988763     4567799


Q ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHH
Q psy11230        213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQ  291 (553)
Q Consensus       213 l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~  291 (553)
                      +|.|+..+..+++++|++.|+++..+.....+|++.|...|..++++++++.+.....-.. +.+|+++++..++.++..
T Consensus       279 lh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~  358 (1143)
T KOG4177|consen  279 LHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAG  358 (1143)
T ss_pred             chhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887766555 789999999999999888


Q ss_pred             HHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy11230        292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV  371 (553)
Q Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~  371 (553)
                      ++...   ..........+.+|++.++..+..  +.+++++..|.+++..+..|.||||.+...++..+++.++++|+++
T Consensus       359 ~l~~~---~~~~~~a~~k~~~pl~la~~~g~~--~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~  433 (1143)
T KOG4177|consen  359 ALLEH---GAQRRQAEEKGFTPLHLAVKSGRV--SVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP  433 (1143)
T ss_pred             Hhhcc---ccccCcccccCCcchhhhcccCch--hHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh
Confidence            88777   445556677899999999999877  9999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHcC-CchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHH
Q psy11230        372 NVIDNQGQMPLHIAVQNG-YVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI  449 (553)
Q Consensus       372 ~~~~~~~~~~l~~a~~~~-~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  449 (553)
                      +..+..|+|++|.|+..+ +.++. .++..|.+++.....|.||||+|+..|+.++++.|++.++..+.....+-+++|.
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhl  513 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHL  513 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhh
Confidence            999999999999999999 66666 6778999999999999999999999999999999999988888888889999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHH
Q psy11230        450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI  529 (553)
Q Consensus       450 A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  529 (553)
                      |...+....++.++++|++++.++..++||||.|+.+|++++||+|+++|+|++..+.    .|+||||.|+..|+.+|+
T Consensus       514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~----~G~TPLH~Aa~~G~~~i~  589 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK----LGYTPLHQAAQQGHNDIA  589 (1143)
T ss_pred             hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCC----CCCChhhHHHHcChHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987    899999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        530 NKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       530 ~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      ++|+++|+++|+.|.+|.||||+|
T Consensus       590 ~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  590 ELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             HHHHHcCCCCCcccccCcchhHHH
Confidence            999999999999999999999875

>KOG4177|consensus

Probab=100.00  E-value=7.5e-64  Score=490.65  Aligned_cols=537  Identities=34%  Similarity=0.481  Sum_probs=502.6

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCC
Q psy11230          1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGN   79 (553)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~   79 (553)
                      +||.++.++.+|.||||.|+..|+.++|+.|+..|+.++.. +.+|.||||.|+..|+ +++++|+.++++++.+|..|.
T Consensus        76 ~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~-~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~  154 (1143)
T KOG4177|consen   76 RGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDAR-DRDGLTPLHCAARKGHVQVIELLLQHGAPINIKTKNGL  154 (1143)
T ss_pred             cccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhc-ccCCCcchhhhcccccHHHHHHHHHccCCCcccccCCC
Confidence            68999999999999999999999999999999999999998 9999999999999999 999999999999999999999


Q ss_pred             cHHHHHHh---------------------hcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230         80 TVLHTVAS---------------------IKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH  138 (553)
Q Consensus        80 t~l~~a~~---------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  138 (553)
                      ||+|+|+.                     ...++.+++++|+...++.+..+..+.||+|.||.....+++++++.+|++
T Consensus       155 t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gad  234 (1143)
T KOG4177|consen  155 SPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGAD  234 (1143)
T ss_pred             CchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhhccccccceeeeeeeccCc
Confidence            99987642                     113667888889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHH--------HHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCc
Q psy11230        139 TECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGG  210 (553)
Q Consensus       139 ~~~~~~~~~t~l~~~--------~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  210 (553)
                      +...+..|.||+|.+        +.+++..+..++..+..+.||+|.|+..+..++.++|++.|+++...     .....
T Consensus       235 v~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~-----~~~~k  309 (1143)
T KOG4177|consen  235 VSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAK-----ARDDQ  309 (1143)
T ss_pred             CCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccc-----ccccc
Confidence            999999999999999        56899999999999999999999999999999999999999998763     45677


Q ss_pred             hhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc-ccCCHHHHHHHhCCHHH
Q psy11230        211 QLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ-FIHSPLHLAIEKQHIAI  289 (553)
Q Consensus       211 ~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~-~~~~~l~~a~~~~~~~~  289 (553)
                      ++++.+...|..++++.+++.+..++..+..+.+|+|+++..++.++..++...+....... .+.+|++.|+.++..+.
T Consensus       310 t~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~  389 (1143)
T KOG4177|consen  310 TPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSV  389 (1143)
T ss_pred             ChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhH
Confidence            89999999999999999999999999999999999999999999999999988877654443 37899999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCC
Q psy11230        290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ-CWDAVSLLVKHG  368 (553)
Q Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~v~~Ll~~~  368 (553)
                      ++.++..+.   ..+.....+.||+|.++.....  .+++.+++.|++++..+..|+|++|+|+..| ..+....+++.|
T Consensus       390 v~Lll~~ga---~~~~~gk~gvTplh~aa~~~~~--~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  390 VELLLEAGA---DPNSAGKNGVTPLHVAAHYGNP--RVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             HHhhhhccC---CcccCCCCCcceeeehhhccCc--ceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcC
Confidence            999999954   4888889999999999999877  9999999999999999999999999999999 889999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCchHHH-HHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHH
Q psy11230        369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL  447 (553)
Q Consensus       369 ~~~~~~~~~~~~~l~~a~~~~~~~~~~-ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  447 (553)
                      .+++...+.|.||||.|.+.|+.++.. +++.+...+...+.+-+++|.+...+...+++.++++|++++.++..|.|||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPL  544 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchH
Confidence            999999999999999999999999995 5566667777788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHH
Q psy11230        448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA  527 (553)
Q Consensus       448 ~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~  527 (553)
                      |.|+.+|+..+|++|+++|++++.+++.|+||||.|+..|+.+|+.+|+++|+++|..+.    .|.|||++|+..|+++
T Consensus       545 h~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~----~g~TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL----DGFTPLHIAVRLGYLS  620 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc----cCcchhHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999998    9999999999999999


Q ss_pred             HHHHHHhcCCC-----CCCCCCCCCCCCCC
Q psy11230        528 VINKLLDYNPD-----LDVKDKNGNTALHP  552 (553)
Q Consensus       528 ~v~~Ll~~g~~-----~~~~~~~~~t~l~~  552 (553)
                      ++++|+..|++     +...+..|.+|..+
T Consensus       621 ~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v  650 (1143)
T KOG4177|consen  621 VVKLLKVVTATPAATDPVKENRKGAVPEDV  650 (1143)
T ss_pred             hhhHHHhccCccccccchhhhhcccChhhH
Confidence            99999999999     88888889998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-57  Score=455.42  Aligned_cols=349  Identities=29%  Similarity=0.364  Sum_probs=284.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcC
Q psy11230        174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHG  253 (553)
Q Consensus       174 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~  253 (553)
                      +++.|+..|+.+++++|++.|++++..     ...+.+||+.|+..|+.++|++|+++|++++..+..|.+||+.|+..+
T Consensus       148 ~l~~~i~~~~~~i~k~Ll~~Gadvn~~-----d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~  222 (682)
T PHA02876        148 LIKERIQQDELLIAEMLLEGGADVNAK-----DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK  222 (682)
T ss_pred             HHHHHHHCCcHHHHHHHHhCCCCCCCC-----CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcC
Confidence            445555555555555555555555431     233455666666777777777777777777777777888888888888


Q ss_pred             CHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHh
Q psy11230        254 HLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY  333 (553)
Q Consensus       254 ~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  333 (553)
                      +.+++++|++.+.++..   ...++..|+..++.+.++++++.   ..+.+..+..|.||||+|+..+.. .+++++|++
T Consensus       223 ~~~ivk~Ll~~~~~~~~---~~~~L~~ai~~~~~~~~~~Ll~~---g~~vn~~d~~g~TpLh~Aa~~~~~-~~iv~lLl~  295 (682)
T PHA02876        223 NIDTIKAIIDNRSNINK---NDLSLLKAIRNEDLETSLLLYDA---GFSVNSIDDCKNTPLHHASQAPSL-SRLVPKLLE  295 (682)
T ss_pred             CHHHHHHHHhcCCCCCC---CcHHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhCCCH-HHHHHHHHH
Confidence            88888888887765533   34677888888888888888876   455666677888999999887653 368889999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC-CchHH-HHHHcCCCCCCCCCCC
Q psy11230        334 HGANVNVKDDENKTPLHIAIESQ-CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-YVAIP-NLIRHGANVNARNKYA  410 (553)
Q Consensus       334 ~~~~~~~~~~~~~t~l~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~-~ll~~~~~~~~~~~~~  410 (553)
                      .|++++..+..|.||||+|+..| ..++++.|+..|++++..+..|.||||+|+..+ ..++. .++..|++++.++..|
T Consensus       296 ~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G  375 (682)
T PHA02876        296 RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCD  375 (682)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCC
Confidence            99999999999999999999998 589999999999999999999999999998854 45555 6778999999999999


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCC-HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC-C
Q psy11230        411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN-LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ-N  488 (553)
Q Consensus       411 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~-~  488 (553)
                      +||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|+++|++++.++..|+||||+|+..+ +
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999987665 56789999999999999999999999999876 6


Q ss_pred             HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                      .+++++|+++|++++..+.    .|.|||++|+.++  .+++.|+++|+++.
T Consensus       456 ~~iv~lLl~~Gad~n~~d~----~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        456 LDVIEMLLDNGADVNAINI----QNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            8999999999999999887    8999999999876  57999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-56  Score=446.00  Aligned_cols=331  Identities=32%  Similarity=0.421  Sum_probs=303.4

Q ss_pred             chhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHH
Q psy11230        210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIA  288 (553)
Q Consensus       210 ~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~  288 (553)
                      .++++.++..|+.+++++|++.|++++.++..|.||||+|+..|+.++|++|+++|+++..... +.+|++.|+..++.+
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~  225 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID  225 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHH
Confidence            4678888899999999999999999999999999999999999999999999999998876654 789999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHhC
Q psy11230        289 IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCW-DAVSLLVKH  367 (553)
Q Consensus       289 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~v~~Ll~~  367 (553)
                      +++++++....   .    ..+.++++.++..+..  +.+++|++.|++++..+..|.||||+|+..++. +++++|++.
T Consensus       226 ivk~Ll~~~~~---~----~~~~~~L~~ai~~~~~--~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~  296 (682)
T PHA02876        226 TIKAIIDNRSN---I----NKNDLSLLKAIRNEDL--ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER  296 (682)
T ss_pred             HHHHHHhcCCC---C----CCCcHHHHHHHHcCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC
Confidence            99999987432   1    2345688888877655  999999999999999999999999999999986 699999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCC-chHH-HHHHcCCCCCCCCCCCChHHHHHHhc-CCHHHHHHHHhCCCCccccccCCC
Q psy11230        368 GADVNVIDNQGQMPLHIAVQNGY-VAIP-NLIRHGANVNARNKYAKTPLHIAVEQ-KNMSALNYLLEHGAQVDARTQLGK  444 (553)
Q Consensus       368 ~~~~~~~~~~~~~~l~~a~~~~~-~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~~~  444 (553)
                      |++++..+..|.||||.|+..|. .++. .++..|++++..+..|.||||+|+.. +..+++++|++.|++++.++..|.
T Consensus       297 gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~  376 (682)
T PHA02876        297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK  376 (682)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCC
Confidence            99999999999999999999984 5555 78899999999999999999999985 578999999999999999999999


Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC-HHHHHHHHhccCCcccccccccCCCCcHHHHHHhh
Q psy11230        445 DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN-VAILECLLVNKADINAKIISGIWKGYTPLHLAVES  523 (553)
Q Consensus       445 t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~  523 (553)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++..+.    .|.||||+|+..
T Consensus       377 TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~----~G~TpLh~Aa~~  452 (682)
T PHA02876        377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK----DLSTPLHYACKK  452 (682)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC----CCChHHHHHHHh
Confidence            99999999999999999999999999999999999999997665 5679999999999999988    899999999998


Q ss_pred             C-CHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        524 N-NEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       524 ~-~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      | +.+++++|+++|++++.+|..|.|||++|
T Consensus       453 ~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        453 NCKLDVIEMLLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            7 78999999999999999999999999864

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-53  Score=415.62  Aligned_cols=450  Identities=16%  Similarity=0.173  Sum_probs=354.6

Q ss_pred             CCCccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-H----HHHHHHHcCCCCcc
Q psy11230          2 DADVNATNKEGITLFQQAIVS---SQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-R----LVRLLLEYNVDVNA   73 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~----~v~~Ll~~~~~~~~   73 (553)
                      |++++.+|++|.||||+|+..   |+.++|++|++.|++++.. +..|.||||+|+..|+ +    +++.|++.+...+.
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            678899999999999998666   8899999999999999987 9999999999999886 4    56788887544444


Q ss_pred             cCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCC---CCc
Q psy11230         74 VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA--ARTGNYKMVRVLIDHGAHTECKNHQ---GYN  148 (553)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~---~~t  148 (553)
                      .+.  .+++++|+..  ++.+++++|+++|++++.+|..|+||||+|  +.+|+.++|++|+++|++++.++..   |++
T Consensus       101 ~~~--~~~~~~a~~~--~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~  176 (661)
T PHA02917        101 NDF--NIFSYMKSKN--VDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYA  176 (661)
T ss_pred             CCc--chHHHHHhhc--CCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccc
Confidence            332  3667777776  899999999999999999999999999965  4578999999999999999865533   322


Q ss_pred             HHHHHHHHHHhCCCCccccCCCCCCHHHHHHH-----------cCCHHHHHHHHHcCCCccchhccccccCCchhhHHHH
Q psy11230        149 ALHVAVGILLRKGADINVENNFGKTAFQMAYE-----------MKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV  217 (553)
Q Consensus       149 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~-----------~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~  217 (553)
                      .              .+.....+.|||++|+.           .++.+++++|++.|++++.     ....+.+|||.|+
T Consensus       177 ~--------------~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~-----~d~~G~TpLh~A~  237 (661)
T PHA02917        177 Y--------------DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS-----IDKNYCTALQYYI  237 (661)
T ss_pred             c--------------ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc-----CCCCCCcHHHHHH
Confidence            1              01223455688998875           4689999999999999875     2467789999999


Q ss_pred             HcCCH--HHHHHHHHcCCCCc----CCCCCCCcHHHHHHH-------c--CCHHHHHHHHhCCCCCCcccccCCHHHHHH
Q psy11230        218 RNGHQ--NAVKLILEKGANVH----AKDQLCKTALDIAVE-------H--GHLKIVEFLLDHGACVDSLQFIHSPLHLAI  282 (553)
Q Consensus       218 ~~g~~--~~v~~Ll~~~~~~~----~~~~~~~~~l~~A~~-------~--~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~  282 (553)
                      ..|+.  ++|+.|++ |++.+    ..+..+.+++++|+.       .  .+.++++.|++.|++.     ...+++++.
T Consensus       238 ~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~-----~~~~~~~~~  311 (661)
T PHA02917        238 KSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH-----GIMCSIVPL  311 (661)
T ss_pred             HcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC-----ceeEeeecc
Confidence            98885  79999975 77654    355667788888884       1  1789999999999853     346778888


Q ss_pred             HhCCHHHHHHHHHhcCCCCCccccCCCCCchHHH---HHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q psy11230        283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHL---VVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD  359 (553)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  359 (553)
                      ..+..+++++++...           .+.++++.   ++..+..+.+++++|++.|++++..+..|.++.    ...+.+
T Consensus       312 ~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~  376 (661)
T PHA02917        312 WRNDKETISLILKTM-----------NSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSY  376 (661)
T ss_pred             cccchHHHHHHHHHh-----------chHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHH
Confidence            889999999888531           12224343   333554456799999999999999888888753    366788


Q ss_pred             HHHHHHh-CCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccc
Q psy11230        360 AVSLLVK-HGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA  438 (553)
Q Consensus       360 ~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~  438 (553)
                      ++++|+. .|++++..+..|+||||.|++++...+..+.       .....|...  .+...+..+++++|+++|++++.
T Consensus       377 ~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~v~~Ll~~GAdIN~  447 (661)
T PHA02917        377 TMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYT-------YTYKKGLCD--MSYACPILSTINICLPYLKDINM  447 (661)
T ss_pred             HHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhh-------hhhhhccch--hhhhhhhHHHHHHHHHCCCCCCC
Confidence            8888887 5888777777899999999877665443220       011112222  22333478999999999999999


Q ss_pred             cccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH-hCCHHHHHHHHhccCCcccc
Q psy11230        439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK-IQNVAILECLLVNKADINAK  505 (553)
Q Consensus       439 ~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~-~~~~~~~~~Ll~~g~~~~~~  505 (553)
                      ++..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+. .++.+++++|+++|++++..
T Consensus       448 kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        448 IDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence            99999999999999999999999999999999999999999999996 68899999999999998854

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-53  Score=415.22  Aligned_cols=449  Identities=19%  Similarity=0.210  Sum_probs=330.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCC----hHHH
Q psy11230         25 TPIAKLLAERGANINDPFPDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD----PTAV   96 (553)
Q Consensus        25 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~----~~~~   96 (553)
                      ++.||.|+..|..++.+ +.+|+||||+|+..   |+ ++|++|++.|++++..+..|+||||+|+..  ++    .+++
T Consensus        12 ~~~~~~l~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~--g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLRDRDPNDTR-NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS--RHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHhccCccccc-CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc--CChhHHHHHH
Confidence            57899999999988877 99999999998655   77 999999999999999999999999999998  76    4567


Q ss_pred             HHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHH
Q psy11230         97 EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQ  176 (553)
Q Consensus        97 ~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~  176 (553)
                      ++|++.+...+..+  ..+++++|+.+|+.++|++|+++|++++..+..|+|||+.+                       
T Consensus        89 ~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~-----------------------  143 (661)
T PHA02917         89 MALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENY-----------------------  143 (661)
T ss_pred             HHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHH-----------------------
Confidence            88988654455443  23778889999999999999999999987777776665432                       


Q ss_pred             HHHHcCCHHHHHHHHHcCCCccchhcc---------ccccCCchhhHHHHH-----------cCCHHHHHHHHHcCCCCc
Q psy11230        177 MAYEMKNFPAIELFLKYGVNVEQCVCH---------ENVKHGGQLLLHLVR-----------NGHQNAVKLILEKGANVH  236 (553)
Q Consensus       177 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~---------~~~~~~~~~l~~a~~-----------~g~~~~v~~Ll~~~~~~~  236 (553)
                      .|...|+.+++++|+++|++++.....         .......++|+.|+.           .++.+++++|++.|++++
T Consensus       144 ~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn  223 (661)
T PHA02917        144 VMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS  223 (661)
T ss_pred             HHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc
Confidence            345689999999999999998642110         112233599999985           468999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCH--HHHHHHHhCCCCCCccc-----ccCCHHHHHHHh---------CCHHHHHHHHHhcCCC
Q psy11230        237 AKDQLCKTALDIAVEHGHL--KIVEFLLDHGACVDSLQ-----FIHSPLHLAIEK---------QHIAIVQLLLRRNNNN  300 (553)
Q Consensus       237 ~~~~~~~~~l~~A~~~~~~--e~v~~Ll~~~~~~~~~~-----~~~~~l~~a~~~---------~~~~~~~~l~~~~~~~  300 (553)
                      .++..|.||||+|+..|+.  |+|++|++ |++.....     .+.+++++|+.-         .+.+++++|++.+.  
T Consensus       224 ~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga--  300 (661)
T PHA02917        224 SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGK--  300 (661)
T ss_pred             cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCC--
Confidence            9999999999999999985  79999975 77654211     234566666631         15677777777642  


Q ss_pred             CCccccCCCCCchHHHHHhccccChHHHHHHHh-CCCCCCCCCCCCCCHHHH---HHHcCC--HHHHHHHHhCCCCcccc
Q psy11230        301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY-HGANVNVKDDENKTPLHI---AIESQC--WDAVSLLVKHGADVNVI  374 (553)
Q Consensus       301 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~---a~~~~~--~~~v~~Ll~~~~~~~~~  374 (553)
                             ..+.++++++...+..  +++.+++. .+.+         ++++.   ++..|.  .+++++|++.|++++.+
T Consensus       301 -------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~  362 (661)
T PHA02917        301 -------PHGIMCSIVPLWRNDK--ETISLILKTMNSD---------VLQHILIEYMTFGDIDIPLVECMLEYGAVVNKE  362 (661)
T ss_pred             -------CCceeEeeecccccch--HHHHHHHHHhchH---------HHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCC
Confidence                   1344556666655544  66666653 2222         23333   333554  44777777777777777


Q ss_pred             CCCCCcHHHHHHHcCCchHHHHHH-cCCCCCCCCCCCChHHHHHHhcCC--HHHHHHHHhCCCCccccccCCCCHHHHHH
Q psy11230        375 DNQGQMPLHIAVQNGYVAIPNLIR-HGANVNARNKYAKTPLHIAVEQKN--MSALNYLLEHGAQVDARTQLGKDPLYIAV  451 (553)
Q Consensus       375 ~~~~~~~l~~a~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~  451 (553)
                      +..|+++.   ...+...+..|+. .|++++..+..|+||||.|++.+.  .+...+...+          |...  .+.
T Consensus       363 ~~~g~~~~---~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~----------~~~~--~~~  427 (661)
T PHA02917        363 AIHGYFRN---INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK----------GLCD--MSY  427 (661)
T ss_pred             Cccccchh---hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh----------ccch--hhh
Confidence            66666643   1222223334444 466666556667777777765443  2322222111          1111  122


Q ss_pred             HhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHh-hCCHHHHH
Q psy11230        452 EMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVE-SNNEAVIN  530 (553)
Q Consensus       452 ~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~-~~~~~~v~  530 (553)
                      ..+..+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+.    .|.||||+|+. .++.++++
T Consensus       428 ~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~----~G~T~L~~A~~~~~~~~iv~  503 (661)
T PHA02917        428 ACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSN----NGYTCIAIAINESRNIELLK  503 (661)
T ss_pred             hhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC----CCCCHHHHHHHhCCCHHHHH
Confidence            23367899999999999999999999999999999999999999999999999988    89999999996 68999999


Q ss_pred             HHHhcCCCCCC
Q psy11230        531 KLLDYNPDLDV  541 (553)
Q Consensus       531 ~Ll~~g~~~~~  541 (553)
                      +|+++|++++.
T Consensus       504 ~LL~~ga~i~~  514 (661)
T PHA02917        504 MLLCHKPTLDC  514 (661)
T ss_pred             HHHHcCCChhH
Confidence            99999998763

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-51  Score=390.21  Aligned_cols=438  Identities=14%  Similarity=0.201  Sum_probs=258.8

Q ss_pred             CCcc-ccCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcC--H-HHHHHHHHcCC--CCcc
Q psy11230          3 ADVN-ATNKEGITLFQQAIVSS---QTPIAKLLAERGANINDPFPDDGKSCLHIAATKN--I-RLVRLLLEYNV--DVNA   73 (553)
Q Consensus         3 ~~~~-~~~~~g~~~l~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~--~-~~v~~Ll~~~~--~~~~   73 (553)
                      +++| .+|..|.||||+|+..|   +.++|++|++.|++++.+ +..|.||||+|+..+  + ++|++|++.|+  +++.
T Consensus        31 ~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         31 HNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCR-NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             cchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc-CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            3566 77777888888888776   478888888888888777 777888888777755  5 78888888754  3466


Q ss_pred             cCCCCCcHHHHHHhhcCCChHHHHHHhh-CCCCccCCCC-----CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230         74 VDNLGNTVLHTVASIKTRDPTAVEILKT-NRANVNIKNK-----EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGY  147 (553)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~~~~Ll~-~~~~~~~~~~-----~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  147 (553)
                      .+..+.+||+.+++...++.+++++|++ .+++++....     .|.+|+++|..+++.++|++|+++|++++.-...+.
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            6667778888777765677788888885 5566665532     567888888888888888888888777642211000


Q ss_pred             cHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHH
Q psy11230        148 NALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKL  227 (553)
Q Consensus       148 t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~  227 (553)
                                       +..+....+.|++......                                ....++.|++++
T Consensus       190 -----------------~~~~~~c~~~l~~~il~~~--------------------------------~~~~n~~eiv~l  220 (672)
T PHA02730        190 -----------------MYDSDRCKNSLHYYILSHR--------------------------------ESESLSKDVIKC  220 (672)
T ss_pred             -----------------cccCCccchhHHHHHHhhh--------------------------------hhhccCHHHHHH
Confidence                             0000111122222222110                                124578999999


Q ss_pred             HHHcCCCCcCCCCCCCcHHHH--HHHcCCHHHHHHHHhCCCCCCcccccCCH---------HHHHHH----hCCHHHHHH
Q psy11230        228 ILEKGANVHAKDQLCKTALDI--AVEHGHLKIVEFLLDHGACVDSLQFIHSP---------LHLAIE----KQHIAIVQL  292 (553)
Q Consensus       228 Ll~~~~~~~~~~~~~~~~l~~--A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~---------l~~a~~----~~~~~~~~~  292 (553)
                      |+++|++++.++..|+||||+  +...++.|++++|++...+........++         |..-.+    .-+.++|+.
T Consensus       221 LIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  300 (672)
T PHA02730        221 LIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNL  300 (672)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHH
Confidence            999999999999999999995  55567799999999833222111111111         111111    113455666


Q ss_pred             HHHhcCCCCC----ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHH
Q psy11230        293 LLRRNNNNIN----INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLV  365 (553)
Q Consensus       293 l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll  365 (553)
                      |++.......    +...+..+.+            ..++..+++.--..+  ..--+..|+.-...+   +.+++++|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~n------------~~~~~~i~~~~~~~~--~~~~q~~l~~Y~~~~~~v~ieIvelLI  366 (672)
T PHA02730        301 LIEGRHTLIDVMRSITSYDSREYN------------HYIIDNILKRFRQQD--ESIVQAMLINYLHYGDMVSIPILRCML  366 (672)
T ss_pred             HhhccCcchhhhhccccccccccc------------hhHHHHHHHhhhccc--hhHHHHHHHHHHhcCCcCcHHHHHHHH
Confidence            6664322100    0011112211            011111111100000  000011344444433   466666666


Q ss_pred             hCCCCccccCCCCCcHHHHHHHcCC----chHH-HHHHcCC--CCCCCCCCCChHHHH---HHhcC---------CHHHH
Q psy11230        366 KHGADVNVIDNQGQMPLHIAVQNGY----VAIP-NLIRHGA--NVNARNKYAKTPLHI---AVEQK---------NMSAL  426 (553)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~-~ll~~~~--~~~~~~~~~~~~l~~---a~~~~---------~~~~~  426 (553)
                      ++|++++.. ..|.||||+|+..+.    .+++ .|+.+|+  +++..+..|.||||.   |...+         ..+++
T Consensus       367 s~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv  445 (672)
T PHA02730        367 DNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF  445 (672)
T ss_pred             HCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence            666666654 556666666655543    3444 4445554  455566666666652   22121         23457


Q ss_pred             HHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHh--CCHHHHHHHHhccCCcc
Q psy11230        427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKI--QNVAILECLLVNKADIN  503 (553)
Q Consensus       427 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~-~~~t~l~~A~~~--~~~~~~~~Ll~~g~~~~  503 (553)
                      ++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++..+. .|.||+++|+..  ++.+++++|+++|++++
T Consensus       446 k~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        446 DILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            777777777777777777777777777777777777777777777765 467777777653  56777777777776665


Q ss_pred             cc
Q psy11230        504 AK  505 (553)
Q Consensus       504 ~~  505 (553)
                      ..
T Consensus       526 ~I  527 (672)
T PHA02730        526 TM  527 (672)
T ss_pred             HH
Confidence            43

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-49  Score=373.87  Aligned_cols=336  Identities=23%  Similarity=0.365  Sum_probs=191.8

Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHH
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL  158 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~  158 (553)
                      .++||.++...+.+.+++++|++.|++++.+|.+|+||||+|+..|+.++|++|+++|++++.++..|.||||       
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh-------  110 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY-------  110 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH-------
Confidence            4555555444334455555555555555555555555555555555555555555555555544444433332       


Q ss_pred             hCCCCccccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCc
Q psy11230        159 RKGADINVENNFGKTAFQMAYEMK--NFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH  236 (553)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~  236 (553)
                                        +|+..+  ..+++++|+++|++++..    ....+.++++ |+..|+.++++.|++.|++++
T Consensus       111 ------------------~A~~~~~~~~e~v~lLl~~Gadin~~----~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~  167 (446)
T PHA02946        111 ------------------YLSGTDDEVIERINLLVQYGAKINNS----VDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR  167 (446)
T ss_pred             ------------------HHHHcCCchHHHHHHHHHcCCCcccc----cCCCCCcHHH-HHHCCChHHHHHHHhcccccc
Confidence                              222221  233344444444333210    0122333342 445577777777777777777


Q ss_pred             CCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchH
Q psy11230        237 AKDQLCKTALDIAVEHGH--LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL  314 (553)
Q Consensus       237 ~~~~~~~~~l~~A~~~~~--~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  314 (553)
                      .++..|+||||+|+..++  .+++++|++.|+                                   +++..+..|.|||
T Consensus       168 ~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga-----------------------------------din~~d~~G~TpL  212 (446)
T PHA02946        168 IVDKFGKNHIHRHLMSDNPKASTISWMMKLGI-----------------------------------SPSKPDHDGNTPL  212 (446)
T ss_pred             ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCC-----------------------------------CCcccCCCCCCHH
Confidence            777777777777765443  355555555433                                   3345566667777


Q ss_pred             HHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchH
Q psy11230        315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC-WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI  393 (553)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  393 (553)
                      |+|+..+..+.+++++|+. |++++..|..|.||||+|+..++ .+++++|+++|...+     ++ .++.++..+..++
T Consensus       213 H~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~-~~~~a~~~~~~~~  285 (446)
T PHA02946        213 HIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQ-TVNICIFYDRDDV  285 (446)
T ss_pred             HHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----Cc-HHHHHHHcCchHH
Confidence            7776665444566666663 66677667677777777776666 366666666665433     22 3566666666555


Q ss_pred             HHHH-HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCC
Q psy11230        394 PNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSS  472 (553)
Q Consensus       394 ~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~  472 (553)
                      .+++ .+|.      ..|+||||+|+.+|+.+++++|+++|.       .|+||||+|+..++.+++++|+++|++++..
T Consensus       286 ~e~l~~~g~------~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~  352 (446)
T PHA02946        286 LEIINDKGK------QYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV  352 (446)
T ss_pred             HHHHHHcCc------ccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc
Confidence            5433 2221      235566666666666666666666553       3466666666666666666666666666654


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccC
Q psy11230        473 DQFGRTVLHLAVKIQNVAILECLLVNKA  500 (553)
Q Consensus       473 ~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  500 (553)
                       ..|.||+++|+..++.++++.|+.+.+
T Consensus       353 -~~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        353 -VNGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             -cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence             456666666666666666666666543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-49  Score=375.02  Aligned_cols=425  Identities=19%  Similarity=0.235  Sum_probs=278.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcC---H-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHh
Q psy11230         25 TPIAKLLAERGANINDPFPDDGKSCLHIAATKN---I-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK  100 (553)
Q Consensus        25 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~---~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll  100 (553)
                      .+.+|+.++..++++...+.+|+||||+|+..|   + ++|++|+++|++++.+|..|+||||+|+....++.+++++|+
T Consensus        20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll   99 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLI   99 (672)
T ss_pred             HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence            345666666655665222666777777777664   4 777777777777777777777777777665223667777777


Q ss_pred             hCCCCc--cCCCCCCCcHHHHHHH--cCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHHHHhCCCCcccc-CCCCCCH
Q psy11230        101 TNRANV--NIKNKEGDTPLHIAAR--TGNYKMVRVLID-HGAHTECKNHQGYNALHVAVGILLRKGADINVE-NNFGKTA  174 (553)
Q Consensus       101 ~~~~~~--~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~-~~~~~~~  174 (553)
                      +.|+++  +..+..+.+||+.++.  +++.++|++|++ .+++++....                     .. ...|.+|
T Consensus       100 ~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~---------------------~~~~~~~~~~  158 (672)
T PHA02730        100 SSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTN---------------------YYIHCLGLVD  158 (672)
T ss_pred             hcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhh---------------------hhccccchhh
Confidence            765443  4455556677776666  667777777774 4455542210                     00 1145566


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHHHHHHH--
Q psy11230        175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD-QLCKTALDIAVE--  251 (553)
Q Consensus       175 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~A~~--  251 (553)
                      ++++...++.+++++|+++|+++.....                               .....+ ....+.|++++.  
T Consensus       159 ~yl~~~~~~~eIvklLi~~g~~v~g~~~-------------------------------~~~~~~~~~c~~~l~~~il~~  207 (672)
T PHA02730        159 IYVTTPNPRPEVLLWLLKSECYSTGYVF-------------------------------RSCMYDSDRCKNSLHYYILSH  207 (672)
T ss_pred             hhHhcCCCchHHHHHHHHcCCccccccc-------------------------------ccccccCCccchhHHHHHHhh
Confidence            6666666666666666666555421000                               001111 122233443332  


Q ss_pred             ----cCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHH
Q psy11230        252 ----HGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM  327 (553)
Q Consensus       252 ----~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  327 (553)
                          +++.|++++|+++|+                                   +++.++..|.||||++......+.++
T Consensus       208 ~~~~~n~~eiv~lLIs~Ga-----------------------------------dIN~kd~~G~TpLh~~~~~~~~~~ei  252 (672)
T PHA02730        208 RESESLSKDVIKCLIDNNV-----------------------------------SIHGRDEGGSLPIQYYWSCSTIDIEI  252 (672)
T ss_pred             hhhhccCHHHHHHHHHCCC-----------------------------------CCCCCCCCCCCHHHHHHHcCcccHHH
Confidence                334555555555554                                   44556778888888644444434699


Q ss_pred             HHHHHhCCCCCCCCCCCCC----CHHHHHHH--------cCCHHHHHHHHhCCCCc-------cccCCCCCc--------
Q psy11230        328 FKTLLYHGANVNVKDDENK----TPLHIAIE--------SQCWDAVSLLVKHGADV-------NVIDNQGQM--------  380 (553)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~----t~l~~a~~--------~~~~~~v~~Ll~~~~~~-------~~~~~~~~~--------  380 (553)
                      +++|++...+....+....    ..|+--..        .-+.++|+.|++.+...       -..+..|.+        
T Consensus       253 v~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~  332 (672)
T PHA02730        253 VKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNIL  332 (672)
T ss_pred             HHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHH
Confidence            9999985444333322111    11111111        11356788888754331       123444543        


Q ss_pred             -------------HHHHHHHcC---CchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHhCCC--Ccc
Q psy11230        381 -------------PLHIAVQNG---YVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKN----MSALNYLLEHGA--QVD  437 (553)
Q Consensus       381 -------------~l~~a~~~~---~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~g~--~~~  437 (553)
                                   .|+.-.+.+   +.+++ .|+.+|++++.. ..|.||||+|+..++    .+++++|+++|+  +++
T Consensus       333 ~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN  411 (672)
T PHA02730        333 KRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN  411 (672)
T ss_pred             HhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc
Confidence                         566666655   35566 688999999986 789999999998875    899999999997  688


Q ss_pred             ccccCCCCHHHH---HHHhC---------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230        438 ARTQLGKDPLYI---AVEMH---------NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK  505 (553)
Q Consensus       438 ~~~~~~~t~l~~---A~~~~---------~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  505 (553)
                      .++..|.||||.   |...+         ..+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..
T Consensus       412 ~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~  491 (672)
T PHA02730        412 HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTT  491 (672)
T ss_pred             ccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence            899999999984   33232         235799999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCcHHHHHHhh--CCHHHHHHHHhcCCCCC
Q psy11230        506 IISGIWKGYTPLHLAVES--NNEAVINKLLDYNPDLD  540 (553)
Q Consensus       506 ~~~~~~~~~t~l~~A~~~--~~~~~v~~Ll~~g~~~~  540 (553)
                      +..   .|.||||+|+.+  ++.+++++|+++||+++
T Consensus       492 d~~---~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        492 SRS---IINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCc---CCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            752   489999999985  79999999999999753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-48  Score=368.24  Aligned_cols=359  Identities=19%  Similarity=0.245  Sum_probs=297.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHh--cCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCC
Q psy11230         15 LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT--KNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTR   91 (553)
Q Consensus        15 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~--~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (553)
                      ++..++..++.+.++.+++...      +..+.++||.++.  ... ++|++|++.|++++.+|..|+||||+|+..  +
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~--g   83 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIE------PSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI--N   83 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccC------CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc--C
Confidence            4677888899999999987532      2234678888764  334 899999999999999999999999999998  9


Q ss_pred             ChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230         92 DPTAVEILKTNRANVNIKNKEGDTPLHIAARTG--NYKMVRVLIDHGAHTEC-KNHQGYNALHVAVGILLRKGADINVEN  168 (553)
Q Consensus        92 ~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~-~~~~~~t~l~~~~~~l~~~~~~~~~~~  168 (553)
                      +.+++++|+++|++++.+|..|+||||+|+..+  ..+++++|+++|++++. .+.                        
T Consensus        84 ~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~------------------------  139 (446)
T PHA02946         84 NNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE------------------------  139 (446)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC------------------------
Confidence            999999999999999999999999999998876  47899999999988763 343                        


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHH--cCCHHHHHHHHHcCCCCcCCCCCCCcHH
Q psy11230        169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR--NGHQNAVKLILEKGANVHAKDQLCKTAL  246 (553)
Q Consensus       169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~l  246 (553)
                       .|.|||+ |+..|+.+++++|++.|++++.     ....+.++++.|+.  .++.+++++|++.|++++.++..|.|||
T Consensus       140 -~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~-----~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpL  212 (446)
T PHA02946        140 -EGCGPLL-ACTDPSERVFKKIMSIGFEARI-----VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPL  212 (446)
T ss_pred             -CCCcHHH-HHHCCChHHHHHHHhccccccc-----cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence             4455664 5567888999999999887764     24567788888875  4457999999999999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccC
Q psy11230        247 DIAVEHG--HLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN  324 (553)
Q Consensus       247 ~~A~~~~--~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  324 (553)
                      |+|+..+  +.+++++|++ ++                                   +++..+..|.||||+|+..++. 
T Consensus       213 H~Aa~~~~~~~~iv~lLl~-ga-----------------------------------din~~d~~G~TpLh~A~~~~~~-  255 (446)
T PHA02946        213 HIVCSKTVKNVDIINLLLP-ST-----------------------------------DVNKQNKFGDSPLTLLIKTLSP-  255 (446)
T ss_pred             HHHHHcCCCcHHHHHHHHc-CC-----------------------------------CCCCCCCCCCCHHHHHHHhCCh-
Confidence            9999886  7788888774 33                                   3456788999999999988652 


Q ss_pred             hHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCC
Q psy11230        325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANV  403 (553)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~  403 (553)
                      .+++++|+++|..++     ++ .++.++..+..++++.+.++|.+      .|.||||+|+.+|+.+++ .|+.++   
T Consensus       256 ~~~~~~Ll~~g~~~~-----~~-~~~~a~~~~~~~~~e~l~~~g~~------~~~TpLh~Aa~~g~~eivk~Ll~~~---  320 (446)
T PHA02946        256 AHLINKLLSTSNVIT-----DQ-TVNICIFYDRDDVLEIINDKGKQ------YDSTDFKMAVEVGSIRCVKYLLDND---  320 (446)
T ss_pred             HHHHHHHHhCCCCCC-----Cc-HHHHHHHcCchHHHHHHHHcCcc------cCCCHHHHHHHcCCHHHHHHHHHCC---
Confidence            378899999986654     22 48999999999999999988753      468999999999999999 455654   


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCC
Q psy11230        404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV  469 (553)
Q Consensus       404 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~  469 (553)
                          ..++||||+|+..++.+++++|+.+|++++.. ..|.|||++|+..++.++++.|+.+.++.
T Consensus       321 ----~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~  381 (446)
T PHA02946        321 ----IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS  381 (446)
T ss_pred             ----CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence                25789999999999999999999999999985 58999999999999999999999965443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4e-48  Score=373.82  Aligned_cols=406  Identities=19%  Similarity=0.218  Sum_probs=263.6

Q ss_pred             hcCH-HHHHHHHHcC-CCCccc-CCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCC--HHHH
Q psy11230         55 TKNI-RLVRLLLEYN-VDVNAV-DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN--YKMV  129 (553)
Q Consensus        55 ~~~~-~~v~~Ll~~~-~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~--~~iv  129 (553)
                      +.+. ++|++|++.| ++++.. +..|.||||+|+....++.+++++|++.|++++.+|..|.||||+|+..|+  .++|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            3455 9999999999 999998 889999999887654468899999999999999999999999999999995  5999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCC
Q psy11230        130 RVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHG  209 (553)
Q Consensus       130 ~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~  209 (553)
                      ++|+++|++++.++..|.||||+++                      .++..++.++++.|++.+.....       ...
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai----------------------~~a~n~~~EIvkiLie~~d~n~~-------~~~  281 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYI----------------------INIDNINPEITNIYIESLDGNKV-------KNI  281 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHH----------------------HhhhccCHHHHHHHHHhcccccc-------ccc
Confidence            9999999999988888877776552                      13457789999999876432211       111


Q ss_pred             chh---hHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHH
Q psy11230        210 GQL---LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVE--HGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIE  283 (553)
Q Consensus       210 ~~~---l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~--~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~  283 (553)
                      ...   +..|+..|+.+++++|++.|++++.++..|+||||+|+.  .++.+++++|+++|+++..... +.+||+.|+.
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            122   345789999999999999999999999999999999864  4689999999999998876554 6788877654


Q ss_pred             hCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHH----HHHcCCHH
Q psy11230        284 KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI----AIESQCWD  359 (553)
Q Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~----a~~~~~~~  359 (553)
                      ...  ++..+             +..         .....+.+++++|+++|++++..+..|.||||.    |...+..+
T Consensus       362 ~la--v~~~l-------------d~~---------~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~d  417 (764)
T PHA02716        362 MLS--VVNIL-------------DPE---------TDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYD  417 (764)
T ss_pred             hhh--hhccc-------------ccc---------ccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHH
Confidence            211  00000             000         001124599999999999999999999999984    22356789


Q ss_pred             HHHHHHhCCCCccccCC--------CCCc--HHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q psy11230        360 AVSLLVKHGADVNVIDN--------QGQM--PLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL  429 (553)
Q Consensus       360 ~v~~Ll~~~~~~~~~~~--------~~~~--~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  429 (553)
                      ++++|++.++.....++        .+.+  ++|.++..+..++..+.......              ......+++..+
T Consensus       418 IvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~  483 (764)
T PHA02716        418 IIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY--------------DSTKIHDVYHCA  483 (764)
T ss_pred             HHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc--------------cccccchhhHHH
Confidence            99999998765432221        2222  24444444333222111000000              000111222233


Q ss_pred             HhCCCCccccccCCCCHHHHHHHhCCH-----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH-----HHHHHHHhcc
Q psy11230        430 LEHGAQVDARTQLGKDPLYIAVEMHNL-----SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNV-----AILECLLVNK  499 (553)
Q Consensus       430 l~~g~~~~~~~~~~~t~l~~A~~~~~~-----~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~-----~~~~~Ll~~g  499 (553)
                      +..+.+++..+..|+||||+|+..|+.     |++++|+++|++++.++.+|+||||+|+++|+.     ++++.|+++|
T Consensus       484 ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        484 IIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             HHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence            333344444455555555555554443     233555555555555555555555555555543     5555555555


Q ss_pred             CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q psy11230        500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP  537 (553)
Q Consensus       500 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  537 (553)
                      ++++..          .|+.|..+++.+++.+|.++|+
T Consensus       564 a~~~~~----------~l~~~~~~~~~~~~~ll~~~~~  591 (764)
T PHA02716        564 PNVDIV----------IIFLDKCYANGKFPSLLLSEDD  591 (764)
T ss_pred             CCcchH----------HHHHHhhhhhhHHHHHHHHcch
Confidence            544432          3455555555555555554443

>KOG0510|consensus

Probab=100.00  E-value=3.1e-48  Score=357.57  Aligned_cols=370  Identities=26%  Similarity=0.382  Sum_probs=280.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCC
Q psy11230         26 PIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN  105 (553)
Q Consensus        26 ~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~  105 (553)
                      |.++.+++..+....+ +..|++++|.|+..+.-     ++.-+.....|..++||||+|+..  ...+.+++|+++|++
T Consensus        42 D~~tli~~kns~~~~~-~~~gd~~~~~~~~~~y~-----~~~~~~~~a~D~~~n~~l~~a~~~--~~~~~i~~Lls~gad  113 (929)
T KOG0510|consen   42 DRHTLILEKNSSTPGK-RAFGDTELHHASARNYI-----LSKLAISYAKDSADNTPLHAAVEY--NQGDKIQVLLSYGAD  113 (929)
T ss_pred             HHHHHHHHhccccchh-hhhchhHHHHHHhhcch-----hhhhhhhhhhhcccCchhHHHhhc--chHHHHHHHHhcCCC
Confidence            5666666666666555 66677777777766642     222233445566677777777776  667777777777777


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHH
Q psy11230        106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFP  185 (553)
Q Consensus       106 ~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~  185 (553)
                      .+.++..+.+|+|+|+..|+.+..+.|+++|++++..+..+.|                         |||         
T Consensus       114 ~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~T-------------------------pLh---------  159 (929)
T KOG0510|consen  114 TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFT-------------------------PLH---------  159 (929)
T ss_pred             CChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCc-------------------------hhh---------
Confidence            7777777777777777777777777777776666544444333                         233         


Q ss_pred             HHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy11230        186 AIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG  265 (553)
Q Consensus       186 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~  265 (553)
                                                   .|+..++.|..+.|++.|+++...+.+|..|+|.|+..|..|+.+.++.+.
T Consensus       160 -----------------------------~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~  210 (929)
T KOG0510|consen  160 -----------------------------LAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEH  210 (929)
T ss_pred             -----------------------------HHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccc
Confidence                                         334444555556666666677777777788888888888888777776521


Q ss_pred             CCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCC
Q psy11230        266 ACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN  345 (553)
Q Consensus       266 ~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  345 (553)
                      +                                                                 .+++..++..+..+
T Consensus       211 g-----------------------------------------------------------------~~r~~~in~~~n~~  225 (929)
T KOG0510|consen  211 G-----------------------------------------------------------------YERQTHINFDNNEK  225 (929)
T ss_pred             c-----------------------------------------------------------------chhhcccccccCCC
Confidence            1                                                                 01234567778889


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy11230        346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSA  425 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  425 (553)
                      .+|||.|+..|+++.++.+++.|........+            ...-.+.     -++..|.+|.||||+|++.|+.+.
T Consensus       226 ~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~------------~~~q~ke-----lv~~~d~dg~tpLH~a~r~G~~~s  288 (929)
T KOG0510|consen  226 ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD------------AMQQEKE-----LVNDEDNDGCTPLHYAARQGGPES  288 (929)
T ss_pred             CcchhhhhhcCCHHHHHHHHhCccccchhhhH------------HHHHHHH-----HhhcccccCCchHHHHHHcCChhH
Confidence            99999999999999999999987765432111            1111111     146678899999999999999999


Q ss_pred             HHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh-cCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcc
Q psy11230        426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKA-NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN  503 (553)
Q Consensus       426 ~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~g~-~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  503 (553)
                      ++.|+..|++++.++.++.||||.|+.+|+...++.|++ .|. .++..|-.|.||||+|+++|+.++++.|++.|+...
T Consensus       289 vd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  289 VDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             HHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            999999999999999999999999999999999999999 443 467788899999999999999999999999999888


Q ss_pred             c---ccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy11230        504 A---KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP  552 (553)
Q Consensus       504 ~---~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  552 (553)
                      .   .+.    .|.||||.|+.+|+..+|++|+.+|++++.+|+.|+|+|++
T Consensus       369 ~~~e~D~----dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  369 NMSEADS----DGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ccccccc----CCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            4   333    89999999999999999999999999999999999999984

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3e-46  Score=360.88  Aligned_cols=417  Identities=18%  Similarity=0.201  Sum_probs=302.8

Q ss_pred             CCCCcHHHHH-----HHcCCHHHHHHHHHcC-CCCCCCCCCCCccHHHHHHhc--CH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230         10 KEGITLFQQA-----IVSSQTPIAKLLAERG-ANINDPFPDDGKSCLHIAATK--NI-RLVRLLLEYNVDVNAVDNLGNT   80 (553)
Q Consensus        10 ~~g~~~l~~A-----~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~l~~A~~~--~~-~~v~~Ll~~~~~~~~~~~~~~t   80 (553)
                      ..+.++++..     ...++.++|++|++.| ++++...+..|.||||+|+..  ++ +++++|++.|++++.++..|.|
T Consensus       135 ~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~T  214 (764)
T PHA02716        135 NGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLIT  214 (764)
T ss_pred             cccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3345555544     3468899999999999 999887678899999998754  45 9999999999999999999999


Q ss_pred             HHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH---HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHH
Q psy11230         81 VLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA---RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL  157 (553)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l  157 (553)
                      |||+|+.....+.+++++|+++|++++.++..|+||||+|+   .+++.++++.|++.+..-.    ...+|.       
T Consensus       215 PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~----~~~~~~-------  283 (764)
T PHA02716        215 PLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK----VKNIPM-------  283 (764)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc----cccchh-------
Confidence            99999998222459999999999999999999999999985   5789999999998643211    011111       


Q ss_pred             HhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHH--cCCHHHHHHHHHcCCCC
Q psy11230        158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR--NGHQNAVKLILEKGANV  235 (553)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~--~g~~~~v~~Ll~~~~~~  235 (553)
                                   ....+..|+..|+.+++++|++.|++++.     ....+.+|||.|+.  .++.+++++|++.|+++
T Consensus       284 -------------~L~~~i~AA~~g~leiVklLLe~GAdIN~-----kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        284 -------------ILHSYITLARNIDISVVYSFLQPGVKLHY-----KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             -------------hhHHHHHHHHcCCHHHHHHHHhCCCceec-----cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC
Confidence                         01123457889999999999999998764     24567899998873  56899999999999999


Q ss_pred             cCCCCCCCcHHHHHHH--------------cCCHHHHHHHHhCCCCCCcccc-cCCHHHH----HHHhCCHHHHHHHHHh
Q psy11230        236 HAKDQLCKTALDIAVE--------------HGHLKIVEFLLDHGACVDSLQF-IHSPLHL----AIEKQHIAIVQLLLRR  296 (553)
Q Consensus       236 ~~~~~~~~~~l~~A~~--------------~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~----a~~~~~~~~~~~l~~~  296 (553)
                      +.++..|+||||+|+.              .++.+++++|+++|+++..... +.+||+.    |...++.+++++|++.
T Consensus       346 N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        346 NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence            9999999999999875              2577888888888877766554 6777762    2234567777777764


Q ss_pred             cCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC
Q psy11230        297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN  376 (553)
Q Consensus       297 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~  376 (553)
                      +....   ...                  +..+.++..      .+ .....+|.++..++.+...++.+...-..    
T Consensus       426 ~~~~~---~~~------------------~~~q~ll~~------~d-~~~~~lhh~~a~~~~~~~~~~~~~~~~~~----  473 (764)
T PHA02716        426 KVLNM---VKH------------------RILQDLLIR------VD-DTPCIIHHIIAKYNIPTDLYTDEYEPYDS----  473 (764)
T ss_pred             cchhh---hhh------------------hhhhhhhhc------cC-cchhhHHHHHHhcCcchhhhhhhhhhccc----
Confidence            21000   000                  111111111      11 11223566666666655444433211100    


Q ss_pred             CCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCH-----HHHHHHHhCCCCccccccCCCCHHHHH
Q psy11230        377 QGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNM-----SALNYLLEHGAQVDARTQLGKDPLYIA  450 (553)
Q Consensus       377 ~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~-----~~~~~Ll~~g~~~~~~~~~~~t~l~~A  450 (553)
                                 ....++. .++..+.+++..+..|+||||+|+..|+.     +++++|++.|++++.++..|+||||+|
T Consensus       474 -----------~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A  542 (764)
T PHA02716        474 -----------TKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLT  542 (764)
T ss_pred             -----------cccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHH
Confidence                       0111222 23345667788888899999999988775     556999999999999999999999999


Q ss_pred             HHhCCH-----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccc
Q psy11230        451 VEMHNL-----SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA  504 (553)
Q Consensus       451 ~~~~~~-----~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  504 (553)
                      +++|+.     ++|+.|+++|++++..      .+++|...++.+++.+|..+++.+..
T Consensus       543 ~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~~~~~  595 (764)
T PHA02716        543 MRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGKFPSLLLSEDDIIKP  595 (764)
T ss_pred             HHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhHHHHHHHHcchhHHH
Confidence            998876     8999999999888765      47888888888888888888775554

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-43  Score=339.40  Aligned_cols=359  Identities=23%  Similarity=0.338  Sum_probs=230.1

Q ss_pred             HHHHHhcCH-HHHHHHHHc-CCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHH
Q psy11230         50 LHIAATKNI-RLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK  127 (553)
Q Consensus        50 l~~A~~~~~-~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~  127 (553)
                      |..|+..|. +.++.|++. +..++..+..+.||||+|+..  |+.+++++|++.|++++..+..|.|||++|+..|+.+
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~--g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRS--GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            444555555 555555442 333444455555555555555  5555555555555555555555666666666666666


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhcccccc
Q psy11230        128 MVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK  207 (553)
Q Consensus       128 iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  207 (553)
                      ++++|+++|+++...                                   +                             
T Consensus        83 iv~~Ll~~g~~~~~~-----------------------------------~-----------------------------   98 (434)
T PHA02874         83 IIKLLIDNGVDTSIL-----------------------------------P-----------------------------   98 (434)
T ss_pred             HHHHHHHCCCCCCcc-----------------------------------h-----------------------------
Confidence            666666665543200                                   0                             


Q ss_pred             CCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCH
Q psy11230        208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHI  287 (553)
Q Consensus       208 ~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~  287 (553)
                               ......++++.|++.|++++.++..|.||||+|+..|+.+++++|+++|+++...                
T Consensus        99 ---------~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~----------------  153 (434)
T PHA02874         99 ---------IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE----------------  153 (434)
T ss_pred             ---------hccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc----------------
Confidence                     0011234445555555555555555555555555555555555555554443221                


Q ss_pred             HHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11230        288 AIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH  367 (553)
Q Consensus       288 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  367 (553)
                                         +..|.||||+|+..+..  +++++|++.|.+++..+..|.||||+|+..|+.+++++|++.
T Consensus       154 -------------------d~~g~tpLh~A~~~~~~--~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  212 (434)
T PHA02874        154 -------------------DDNGCYPIHIAIKHNFF--DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH  212 (434)
T ss_pred             -------------------CCCCCCHHHHHHHCCcH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence                               12223333333333222  344444444555566677889999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcC-CHHHHHHHHhCCCCccccccCCCCH
Q psy11230        368 GADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQK-NMSALNYLLEHGAQVDARTQLGKDP  446 (553)
Q Consensus       368 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~~~t~  446 (553)
                      |++++..+..|.||||.|+..+... ..++..+.+++.++..|+||||+|+..+ +.+++++|+++|++++.++..|.||
T Consensus       213 g~~i~~~~~~g~TpL~~A~~~~~~~-i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~Tp  291 (434)
T PHA02874        213 GNHIMNKCKNGFTPLHNAIIHNRSA-IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENP  291 (434)
T ss_pred             CCCCcCCCCCCCCHHHHHHHCChHH-HHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            9999999999999999999987654 4445578999999999999999999876 7899999999999999999999999


Q ss_pred             HHHHHHhC-CHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHH
Q psy11230        447 LYIAVEMH-NLSIVEQLLKFKANVNSSDQFG-RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAV  521 (553)
Q Consensus       447 l~~A~~~~-~~~~v~~L~~~g~~~~~~~~~~-~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~  521 (553)
                      |+.|++.+ ..++++.|++.+..++..+..+ .+++..+...++.++-+++.+...++.......-..+.+.+++..
T Consensus       292 L~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~~ei~~mk~~~~~~~~s~~~~~~  368 (434)
T PHA02874        292 IDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNEEIEDMKKTKCGCDKNIFDLCL  368 (434)
T ss_pred             HHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHHHHHHHHHHHhcceecccchHHHHHH
Confidence            99999987 7789999999988776555443 456777766666666666655443333322211112345656554

>KOG0510|consensus

Probab=100.00  E-value=4.7e-45  Score=336.67  Aligned_cols=356  Identities=24%  Similarity=0.328  Sum_probs=281.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      ++-++..|.|++|.|+..+..      +.+-...... +..|.+|||+|++.+. +.+++|++.|++++..+..+.+|+|
T Consensus        54 ~~~~~~~gd~~~~~~~~~~y~------~~~~~~~~a~-D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh  126 (929)
T KOG0510|consen   54 TPGKRAFGDTELHHASARNYI------LSKLAISYAK-DSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLH  126 (929)
T ss_pred             cchhhhhchhHHHHHHhhcch------hhhhhhhhhh-hcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchh
Confidence            456788999999999998866      2232333333 7789999999999999 9999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCC
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD  163 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~  163 (553)
                      +|+..  ++.++.+.|+++|+++|..|..+.||||.||..++.|..+.|++.|+++...+..|                 
T Consensus       127 ~A~~~--~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~-----------------  187 (929)
T KOG0510|consen  127 LAADS--GNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDG-----------------  187 (929)
T ss_pred             hcccc--chHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcC-----------------
Confidence            99998  99999999999999999999999999999999999999999999999886555444                 


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Q psy11230        164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK  243 (553)
Q Consensus       164 ~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~  243 (553)
                              ..|+|.|++.|..++++.+++...                                 .+++..++..+..+.
T Consensus       188 --------~~~iH~aa~s~s~e~mEi~l~~~g---------------------------------~~r~~~in~~~n~~~  226 (929)
T KOG0510|consen  188 --------NFPIHEAARSGSKECMEIFLPEHG---------------------------------YERQTHINFDNNEKA  226 (929)
T ss_pred             --------CchHHHHHHhcchhhhhhhhcccc---------------------------------chhhcccccccCCCC
Confidence                    445666667777766666655110                                 024566777888899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhcccc
Q psy11230        244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW  323 (553)
Q Consensus       244 ~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  323 (553)
                      +|||.|+..|+.++++.+++.|.........           ..                                    
T Consensus       227 ~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~-----------~~------------------------------------  259 (929)
T KOG0510|consen  227 TPLHLAVEGGDIEMLKMCLQNGKKIADVQLD-----------AM------------------------------------  259 (929)
T ss_pred             cchhhhhhcCCHHHHHHHHhCccccchhhhH-----------HH------------------------------------
Confidence            9999999999999999999987755332211           00                                    


Q ss_pred             ChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHH-c-C
Q psy11230        324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIR-H-G  400 (553)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~-~-~  400 (553)
                        .-.+.|      ++..|.+|.||||+|++.|+++.++.|+..|++++.++.++.||||.|+..|+...+ .|++ . .
T Consensus       260 --~q~kel------v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~  331 (929)
T KOG0510|consen  260 --QQEKEL------VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDT  331 (929)
T ss_pred             --HHHHHH------hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCc
Confidence              111111      234567778888888888888888888888888888888888888888888877766 5655 2 2


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcc---ccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230        401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD---ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR  477 (553)
Q Consensus       401 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~  477 (553)
                      ...+..|-.|+||||.|++.|+..+++.|++.|+...   ..|++|.||||.|+..|+..+|+.|+.+|+++..+++.|.
T Consensus       332 rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  332 RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGK  411 (929)
T ss_pred             cccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccc
Confidence            3356677778888888888888888888888888765   4588888888888888888888888888888888888888


Q ss_pred             cHHHH
Q psy11230        478 TVLHL  482 (553)
Q Consensus       478 t~l~~  482 (553)
                      +++++
T Consensus       412 SA~~~  416 (929)
T KOG0510|consen  412 SAFDT  416 (929)
T ss_pred             ccccc
Confidence            88875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-42  Score=332.57  Aligned_cols=314  Identities=30%  Similarity=0.450  Sum_probs=226.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCC
Q psy11230        175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH  254 (553)
Q Consensus       175 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~  254 (553)
                      +..|+..|+.+.++.|++.+.....    .....+.+||+.|+..|+.++|++|++.|++++..+..|.+||+.|+..|+
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n----~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCIN----ISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGA   80 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCC----CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            4455555555555555544332111    112334455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhC
Q psy11230        255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH  334 (553)
Q Consensus       255 ~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  334 (553)
                      .+++++|+++|++....                                             ...  ....++++.+++.
T Consensus        81 ~~iv~~Ll~~g~~~~~~---------------------------------------------~~~--~~~~~~i~~ll~~  113 (434)
T PHA02874         81 HDIIKLLIDNGVDTSIL---------------------------------------------PIP--CIEKDMIKTILDC  113 (434)
T ss_pred             HHHHHHHHHCCCCCCcc---------------------------------------------hhc--cCCHHHHHHHHHC
Confidence            55555555555433110                                             000  0123778888888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChH
Q psy11230        335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTP  413 (553)
Q Consensus       335 ~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~  413 (553)
                      |++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++ .|+++|++++..+..|.||
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tp  193 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP  193 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            888888888888888888888888888888888888888888888888888888888877 5667888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC-CHHHH
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ-NVAIL  492 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~-~~~~~  492 (553)
                      ||.|+..|+.+++++|+++|++++..+..|.||||.|+..+. +.+++|+ .|++++.++..|+||||+|+..+ +.+++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv  271 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDII  271 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHH
Confidence            888888888888888888888888888888888888888765 5666666 57888888888888888888765 78888


Q ss_pred             HHHHhccCCcccccccccCCCCcHHHHHHhhC-CHHHHHHHHhcCCCCCCCCCC
Q psy11230        493 ECLLVNKADINAKIISGIWKGYTPLHLAVESN-NEAVINKLLDYNPDLDVKDKN  545 (553)
Q Consensus       493 ~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~  545 (553)
                      ++|+++|++++..+.    .|.|||+.|++++ ..++++.|++.++.++..+..
T Consensus       272 ~~Ll~~gad~n~~d~----~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~  321 (434)
T PHA02874        272 DILLYHKADISIKDN----KGENPIDTAFKYINKDPVIKDIIANAVLIKEADKL  321 (434)
T ss_pred             HHHHHCcCCCCCCCC----CCCCHHHHHHHhCCccHHHHHHHHhcCchhhcccc
Confidence            888888888888877    7888888888887 677888888888765554443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=324.18  Aligned_cols=289  Identities=28%  Similarity=0.398  Sum_probs=232.2

Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhC-CHHHH
Q psy11230        216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHG---HLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQ-HIAIV  290 (553)
Q Consensus       216 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~---~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~-~~~~~  290 (553)
                      ++..++.+++++|++.|++++.++..|.||||+|+..+   +.+++++|++.|++++.... +.+|+++|+..+ ..+++
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            34566777888888888887777777788888888777   77888888888777766554 677777777777 47777


Q ss_pred             HHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhCC
Q psy11230        291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ--CWDAVSLLVKHG  368 (553)
Q Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~v~~Ll~~~  368 (553)
                      ++|++.   +.+++..+..|.||||+|+.....+.+++++|++.|++++..+..|.||||+|+..+  +.+++++|+++|
T Consensus       101 ~lLl~~---ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        101 KLLIKA---GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHHHHc---CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            777776   445666677788888888865555668888888888888888888888988888765  578888888888


Q ss_pred             CCccccCCCCCcHHHHHHHc--CCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCH--HHHHHHHhCCCCccccccCC
Q psy11230        369 ADVNVIDNQGQMPLHIAVQN--GYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNM--SALNYLLEHGAQVDARTQLG  443 (553)
Q Consensus       369 ~~~~~~~~~~~~~l~~a~~~--~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~g~~~~~~~~~~  443 (553)
                      ++++..+..|.||||.++..  +...+. .++..|++++.++..|+||||+|+..|+.  .+++.|++.|++++.++..|
T Consensus       178 ~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g  257 (471)
T PHA03095        178 ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYG  257 (471)
T ss_pred             CCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCC
Confidence            88888888888888888765  444555 67788888888888888888888888864  57888888888888888888


Q ss_pred             CCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccc
Q psy11230        444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKII  507 (553)
Q Consensus       444 ~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  507 (553)
                      +||||+|+..|+.+++++|+++|++++.++..|.|||++|+.+++.+++++|++++++++....
T Consensus       258 ~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        258 QTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHH
Confidence            8999999888888899999888888888888888999999888888999988888888765543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-41  Score=327.09  Aligned_cols=155  Identities=35%  Similarity=0.507  Sum_probs=127.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCC
Q psy11230        326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA  405 (553)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~  405 (553)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.                     
T Consensus       157 ~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~---------------------  215 (480)
T PHA03100        157 KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF---------------------  215 (480)
T ss_pred             HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH---------------------
Confidence            34444444444555556677888888888888888888888888888777777766666                     


Q ss_pred             CCCCCChHHHHHHhcCC--HHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230        406 RNKYAKTPLHIAVEQKN--MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA  483 (553)
Q Consensus       406 ~~~~~~~~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A  483 (553)
                           .||||.|+..++  .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|
T Consensus       216 -----~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        216 -----ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             -----HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence                 588999999888  8999999999999988888899999999999999999999999999998899999999999


Q ss_pred             HHhCCHHHHHHHHhccCCccccc
Q psy11230        484 VKIQNVAILECLLVNKADINAKI  506 (553)
Q Consensus       484 ~~~~~~~~~~~Ll~~g~~~~~~~  506 (553)
                      +..++.+++++|+++|++++...
T Consensus       291 ~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        291 ILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             HHhCCHHHHHHHHhcCCCHHHHH
Confidence            99999999999999998887643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-41  Score=327.99  Aligned_cols=292  Identities=29%  Similarity=0.395  Sum_probs=220.0

Q ss_pred             HHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc-CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcC-CHHH
Q psy11230         52 IAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK-TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG-NYKM  128 (553)
Q Consensus        52 ~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g-~~~i  128 (553)
                      .++..+. ++|++|++.|++++..+..|.||||+|+... .++.+++++|++.|++++.++..|+||||+|+..| +.++
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHH
Confidence            3445555 7888888888888888778888888887762 22778888888888888888888888888888888 4788


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccC
Q psy11230        129 VRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKH  208 (553)
Q Consensus       129 v~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~  208 (553)
                      +++|+++|++++.++..|.||||+|                         +..                           
T Consensus       100 v~lLl~~ga~in~~~~~g~tpLh~a-------------------------~~~---------------------------  127 (471)
T PHA03095        100 IKLLIKAGADVNAKDKVGRTPLHVY-------------------------LSG---------------------------  127 (471)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHH-------------------------hhC---------------------------
Confidence            8888877777776666665555443                         110                           


Q ss_pred             CchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHH
Q psy11230        209 GGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIA  288 (553)
Q Consensus       209 ~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~  288 (553)
                               ..++.+++++|++.|++++..+..|.||||+|+..+.                                  
T Consensus       128 ---------~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~----------------------------------  164 (471)
T PHA03095        128 ---------FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN----------------------------------  164 (471)
T ss_pred             ---------CcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----------------------------------
Confidence                     2357778888888888777777777777777766541                                  


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHh
Q psy11230        289 IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES--QCWDAVSLLVK  366 (553)
Q Consensus       289 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~v~~Ll~  366 (553)
                                                        .+.+++++|++.|.+++..+..|.||||+++..  ++.++++.|++
T Consensus       165 ----------------------------------~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~  210 (471)
T PHA03095        165 ----------------------------------ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR  210 (471)
T ss_pred             ----------------------------------CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence                                              112444555555555555667777888877764  66788888888


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCc---hHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCC
Q psy11230        367 HGADVNVIDNQGQMPLHIAVQNGYV---AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG  443 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  443 (553)
                      .|++++..+..|.||||+|+..+..   .+..++..|++++.++..|+||||+|+..|+.+++++|+++|++++..+..|
T Consensus       211 ~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        211 AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            8888888888888888888887764   2336778888888888889999999999999999999999999999889999


Q ss_pred             CCHHHHHHHhCCHHHHHHHHhcCCCCCCC
Q psy11230        444 KDPLYIAVEMHNLSIVEQLLKFKANVNSS  472 (553)
Q Consensus       444 ~t~l~~A~~~~~~~~v~~L~~~g~~~~~~  472 (553)
                      +|||++|+..|+.++++.|++++++++..
T Consensus       291 ~tpl~~A~~~~~~~~v~~LL~~~~~~~~~  319 (471)
T PHA03095        291 NTPLSLMVRNNNGRAVRAALAKNPSAETV  319 (471)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCHHHH
Confidence            99999999999999999999888877543

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.5e-40  Score=306.46  Aligned_cols=434  Identities=16%  Similarity=0.167  Sum_probs=265.5

Q ss_pred             CcHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHhh
Q psy11230         13 ITLFQQAIVSSQTP--IAKLLAERGANINDPFPDDGKSCLHIAATKNI--RLVRLLLEYNVDVNAVDNLGNTVLHTVASI   88 (553)
Q Consensus        13 ~~~l~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~--~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~   88 (553)
                      .+.|.-.|+.=+.+  -.+.|++.|+++..  ..++.|||+.-..+.+  .-++.++..+.+++..+-.+.+++|+-+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~   81 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLY--EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSD   81 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCccc--ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHh
Confidence            34455555555444  45889999999976  5777899999977666  566677777778999999999999988774


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHH-cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHH----Hh----
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR-TGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL----LR----  159 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l----~~----  159 (553)
                       .++.|++++|+++|++++.++..+.||+++|+. .++.|++++|++.||++...+..|.||+..-+...    .+    
T Consensus        82 -n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  160 (631)
T PHA02792         82 -NIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELD  160 (631)
T ss_pred             -cccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcc
Confidence             589999999999999999999999999999966 69999999999999999888899999886653110    00    


Q ss_pred             ---CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCc
Q psy11230        160 ---KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH  236 (553)
Q Consensus       160 ---~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~  236 (553)
                         ++..++..+..|.||||+|+..++.+        +                       ..-+.|+++.|+++|++++
T Consensus       161 ~~~~~~~i~~~~~~g~t~L~~~i~~~s~~--------~-----------------------~~~~~~v~k~Li~~g~~~~  209 (631)
T PHA02792        161 DYDYDYTTDYDDRMGKTVLYYYIITRSQD--------G-----------------------YATSLDVINYLISHEKEMR  209 (631)
T ss_pred             ccccccccccCCCCCCchHHHHHhhCCcc--------c-----------------------ccCCHHHHHHHHhCCCCcC
Confidence               11223344444444444444443000        0                       0005677777777777777


Q ss_pred             CCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcccccCCHHH-H-HHHh------CCHHHHHHHHHhcCCCCCcccc
Q psy11230        237 AKDQLCKTALDIAVEHG--HLKIVEFLLDHGACVDSLQFIHSPLH-L-AIEK------QHIAIVQLLLRRNNNNININTK  306 (553)
Q Consensus       237 ~~~~~~~~~l~~A~~~~--~~e~v~~Ll~~~~~~~~~~~~~~~l~-~-a~~~------~~~~~~~~l~~~~~~~~~~~~~  306 (553)
                      ..+..|.||||+|+...  +.|+++.|+...-..   ......|. + -...      =+..++..|++...+..     
T Consensus       210 ~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~---~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~-----  281 (631)
T PHA02792        210 YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG---NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFY-----  281 (631)
T ss_pred             ccCCCCChHHHHHHHcccchHHHHHHHHhccccc---cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccc-----
Confidence            77777777777777777  677777776631111   00011110 0 0001      11235555554422100     


Q ss_pred             CCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhCCCCccccCCCCCcHHHH
Q psy11230        307 GPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ--CWDAVSLLVKHGADVNVIDNQGQMPLHI  384 (553)
Q Consensus       307 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  384 (553)
                             ++.++.....+ +.+..+++...      .--+..||.-..++  +.+++++|++.|++...  .....+++.
T Consensus       282 -------i~~~~~~~~~~-~~~~~~~~~~~------~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~  345 (631)
T PHA02792        282 -------ILELCNSLRNN-IIISSILKRYT------DSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQ  345 (631)
T ss_pred             -------hhhhhhhhhhh-hHHHHHHHHHh------HHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHH
Confidence                   00011111111 11111111100      01122344444444  45666666666666531  123345556


Q ss_pred             HHHcCCchHH-HHHHcCCCCCCCCCCC--ChHHHHHHhcCCH---HHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHH
Q psy11230        385 AVQNGYVAIP-NLIRHGANVNARNKYA--KTPLHIAVEQKNM---SALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSI  458 (553)
Q Consensus       385 a~~~~~~~~~-~ll~~~~~~~~~~~~~--~~~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  458 (553)
                      |+..+..+++ .|+.+|++++.++..|  .||||.|+.....   +++++|+++|++++.++..|+||||+|+..++.++
T Consensus       346 Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~ei  425 (631)
T PHA02792        346 KFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSL  425 (631)
T ss_pred             HHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHH
Confidence            6666666655 4556666666665543  4666665554443   35666777777777777777777777777777777


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHH----------hCCHHHHHHHHhccCCccc
Q psy11230        459 VEQLLKFKANVNSSDQFGRTVLHLAVK----------IQNVAILECLLVNKADINA  504 (553)
Q Consensus       459 v~~L~~~g~~~~~~~~~~~t~l~~A~~----------~~~~~~~~~Ll~~g~~~~~  504 (553)
                      +++|+++|++++.++..|.|||++|+.          ....++++.|+++|+++..
T Consensus       426 velLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        426 VEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            777777777777777777777777764          1224567777777766553

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=323.67  Aligned_cols=286  Identities=33%  Similarity=0.456  Sum_probs=241.2

Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcC
Q psy11230        220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNN  298 (553)
Q Consensus       220 g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~  298 (553)
                      ...++++.+++.+...+..+..+.+|||.|+..++.+++++|+++|+++..... +.+|++.+....             
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~-------------   79 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIK-------------   79 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHH-------------
Confidence            344667777777666666677788888888888888888888888776654322 334444400000             


Q ss_pred             CCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCccccCC
Q psy11230        299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI--ESQCWDAVSLLVKHGADVNVIDN  376 (553)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~v~~Ll~~~~~~~~~~~  376 (553)
                                        |+..+..  +++++|++.|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+.
T Consensus        80 ------------------a~~~~~~--~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~  139 (480)
T PHA03100         80 ------------------YNLTDVK--EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS  139 (480)
T ss_pred             ------------------HHhhchH--HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC
Confidence                              4443332  6666666667777778888899999999  89999999999999999999999


Q ss_pred             CCCcHHHHHHHcC--CchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCC------CCHH
Q psy11230        377 QGQMPLHIAVQNG--YVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG------KDPL  447 (553)
Q Consensus       377 ~~~~~l~~a~~~~--~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~------~t~l  447 (553)
                      .|.||||.|+..+  ..+++ .++++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|      .||+
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL  219 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence            9999999999998  77777 6778899999999999999999999999999999999999999988888      8999


Q ss_pred             HHHHHhCC--HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230        448 YIAVEMHN--LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN  525 (553)
Q Consensus       448 ~~A~~~~~--~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~  525 (553)
                      |.|+..|+  .+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.||+++|+..++
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~----~g~tpl~~A~~~~~  295 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK----YGDTPLHIAILNNN  295 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHhCC
Confidence            99999999  9999999999999999999999999999999999999999999999999887    89999999999999


Q ss_pred             HHHHHHHHhcCCCCCCC
Q psy11230        526 EAVINKLLDYNPDLDVK  542 (553)
Q Consensus       526 ~~~v~~Ll~~g~~~~~~  542 (553)
                      .+++++|+++|++++..
T Consensus       296 ~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        296 KEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             HHHHHHHHhcCCCHHHH
Confidence            99999999999987753

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-39  Score=311.24  Aligned_cols=280  Identities=24%  Similarity=0.335  Sum_probs=197.0

Q ss_pred             HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcC------CHHHHHHH
Q psy11230         59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG------NYKMVRVL  132 (553)
Q Consensus        59 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g------~~~iv~~L  132 (553)
                      ++|++|+++|+++|.. ..|.||+|+++....++.+++++|+++|+++|.++ .+.||||.|+.++      +.++|++|
T Consensus        17 ~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~L   94 (494)
T PHA02989         17 NALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLL   94 (494)
T ss_pred             HHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHH
Confidence            7777777777777766 45677776655543346677777777777777665 4577777776543      46777777


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchh
Q psy11230        133 IDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL  212 (553)
Q Consensus       133 l~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  212 (553)
                      +++|++++.++..|.|||+.+                         +..                               
T Consensus        95 l~~Gadin~~d~~g~tpL~~a-------------------------~~~-------------------------------  118 (494)
T PHA02989         95 LKFGADINLKTFNGVSPIVCF-------------------------IYN-------------------------------  118 (494)
T ss_pred             HHCCCCCCCCCCCCCcHHHHH-------------------------HHh-------------------------------
Confidence            777777776666665555433                         111                               


Q ss_pred             hHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHH
Q psy11230        213 LLHLVRNGHQNAVKLILEKGANV-HAKDQLCKTALDIAVEH--GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAI  289 (553)
Q Consensus       213 l~~a~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~A~~~--~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~  289 (553)
                          ...|+.+++++|+++|+++ +.++..|+||||+|+..  ++.+++++|+++|+++...                  
T Consensus       119 ----~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~------------------  176 (494)
T PHA02989        119 ----SNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK------------------  176 (494)
T ss_pred             ----cccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc------------------
Confidence                1224567777777777777 67778888888887654  4677777777776654321                  


Q ss_pred             HHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHH
Q psy11230        290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES----QCWDAVSLLV  365 (553)
Q Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~----~~~~~v~~Ll  365 (553)
                                                                         .+..|.|||+.|+..    ++.+++++|+
T Consensus       177 ---------------------------------------------------~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll  205 (494)
T PHA02989        177 ---------------------------------------------------TSLYGLTPMNIYLRNDIDVISIKVIKYLI  205 (494)
T ss_pred             ---------------------------------------------------ccccCCChHHHHHhcccccccHHHHHHHH
Confidence                                                               223445555555443    3677777777


Q ss_pred             hCCCCccccCCCCCcHHHHHHHcC------CchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccc
Q psy11230        366 KHGADVNVIDNQGQMPLHIAVQNG------YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR  439 (553)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~a~~~~------~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  439 (553)
                      ++|++++..+..+.++++.++..+      ..++..++..+++++.++..|+||||+|+..|+.+++++|+++|++++.+
T Consensus       206 ~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        206 KKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             hCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc
Confidence            777777777766777777665433      34555667778888888888999999999889999999999999999888


Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHHhcCCCC
Q psy11230        440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANV  469 (553)
Q Consensus       440 ~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~  469 (553)
                      +..|+||||+|+..|+.+++++|++++++.
T Consensus       286 d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        286 SKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            888999999999999999999998876543

>KOG0508|consensus

Probab=100.00  E-value=1.8e-39  Score=281.13  Aligned_cols=212  Identities=26%  Similarity=0.340  Sum_probs=140.9

Q ss_pred             HHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCccHHHHHHhcCH-HHHHHHHHc-CCCCc--------ccCCCCCcHH
Q psy11230         18 QAIVSSQTPIAKLLAERGAN-----INDPFPDDGKSCLHIAATKNI-RLVRLLLEY-NVDVN--------AVDNLGNTVL   82 (553)
Q Consensus        18 ~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~-~~~~~--------~~~~~~~t~l   82 (553)
                      -|++.|++..++.|+-...+     .-.. ..+|.|||.+||++|| ++|++|+++ ++++.        .....|.+||
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGE-VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhcc-ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            45555666555555433221     1111 4566677777777777 777777773 33322        2234566666


Q ss_pred             HHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCC
Q psy11230         83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGA  162 (553)
Q Consensus        83 ~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~  162 (553)
                      -.|+..  |+.++|+.|++.|+++|.......|||--||..|++++|+||+++|++++..++.|.|.             
T Consensus        89 WaAsaA--GHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTc-------------  153 (615)
T KOG0508|consen   89 WAASAA--GHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTC-------------  153 (615)
T ss_pred             hHHhcc--CcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCee-------------
Confidence            444443  77777777777777777777767777777777777777777777777777777777553             


Q ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Q psy11230        163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLC  242 (553)
Q Consensus       163 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~  242 (553)
                                  |++|+..|+.+|+++|++.|++++..     ...+.++||.++.+|++|+++.|+++|+.++. +..|
T Consensus       154 ------------LmIa~ykGh~~I~qyLle~gADvn~k-----s~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~G  215 (615)
T KOG0508|consen  154 ------------LMIACYKGHVDIAQYLLEQGADVNAK-----SYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHG  215 (615)
T ss_pred             ------------EEeeeccCchHHHHHHHHhCCCcchh-----cccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCC
Confidence                        45667777777777777777776642     44566777777777777777777777776553 4447


Q ss_pred             CcHHHHHHHcCCHHHHHHHHh
Q psy11230        243 KTALDIAVEHGHLKIVEFLLD  263 (553)
Q Consensus       243 ~~~l~~A~~~~~~e~v~~Ll~  263 (553)
                      .|||..|...|+.++|++|++
T Consensus       216 mtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CchHHHHhhhcchHHHHHHhc
Confidence            788888888888888888875

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=307.79  Aligned_cols=283  Identities=23%  Similarity=0.383  Sum_probs=201.3

Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHh
Q psy11230        219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEH--GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRR  296 (553)
Q Consensus       219 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~--~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  296 (553)
                      ..+.+++++|+++|++++.. ..|.+|++.++..  ++.+++++|+++|++++....+.+|++.|+..+....       
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~-------   84 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITS-------   84 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcch-------
Confidence            46788999999999998887 5688888765543  3688999999999888765555667666554332100       


Q ss_pred             cCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCc-c
Q psy11230        297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES---QCWDAVSLLVKHGADV-N  372 (553)
Q Consensus       297 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~-~  372 (553)
                                               ....+++++|+++|++++..+..|.|||+.|+..   ++.+++++|+++|+++ +
T Consensus        85 -------------------------~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~  139 (494)
T PHA02989         85 -------------------------NKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVND  139 (494)
T ss_pred             -------------------------hhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccc
Confidence                                     0123677777777777777777777777766654   5677777777777777 6


Q ss_pred             ccCCCCCcHHHHHHHc--CCchHH-HHHHcCCCCCC-CCCCCChHHHHHHhcC----CHHHHHHHHhCCCCccccccCCC
Q psy11230        373 VIDNQGQMPLHIAVQN--GYVAIP-NLIRHGANVNA-RNKYAKTPLHIAVEQK----NMSALNYLLEHGAQVDARTQLGK  444 (553)
Q Consensus       373 ~~~~~~~~~l~~a~~~--~~~~~~-~ll~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~~~  444 (553)
                      ..+..|+||||+|+..  ++.+++ .|+++|++++. .+..|.|||+.|+..+    +.+++++|+++|++++..+..+.
T Consensus       140 ~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~  219 (494)
T PHA02989        140 VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE  219 (494)
T ss_pred             ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence            7777777777777654  345555 56677777776 4667777777776543    67777777777777777777777


Q ss_pred             CHHHHHHHh------CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHH
Q psy11230        445 DPLYIAVEM------HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH  518 (553)
Q Consensus       445 t~l~~A~~~------~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~  518 (553)
                      ++++.++..      +..+++++|.. |++++.+|..|+||||+|+..++.+++++|+++|+|++..+.    .|.||||
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~----~G~TpL~  294 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSK----DGDTVLT  294 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCC----CCCCHHH
Confidence            777766543      34566776654 577777777777777777777777777777777777777766    6777777


Q ss_pred             HHHhhCCHHHHHHHHhcCCCC
Q psy11230        519 LAVESNNEAVINKLLDYNPDL  539 (553)
Q Consensus       519 ~A~~~~~~~~v~~Ll~~g~~~  539 (553)
                      +|+..|+.++|++|++.++..
T Consensus       295 ~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        295 YAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHHHcCCHHHHHHHHhcCCCh
Confidence            777777777777777776643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-38  Score=305.30  Aligned_cols=285  Identities=28%  Similarity=0.352  Sum_probs=228.8

Q ss_pred             ccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhC
Q psy11230        206 VKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ  285 (553)
Q Consensus       206 ~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~  285 (553)
                      ...+.+|||.|+..|+.++|++|++.|++++.++..|+||||+|+..|+.+++++|++.+..... ....++++.|+..+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~l~~a~~~~  112 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV-FYTLVAIKDAFNNR  112 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc-ccchhhHHHHHHcC
Confidence            34566799999999999999999999999999999999999999999999999999998765544 44678999999999


Q ss_pred             CHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHH
Q psy11230        286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE-NKTPLHIAIESQCWDAVSLL  364 (553)
Q Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~v~~L  364 (553)
                      +.+++++|+.........     .....+.........+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus       113 ~~ei~~~Ll~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQT-----IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             CHHHHHHHHhCcccCccc-----CcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            999999999763211110     000011111111112236889999999999988888 89999999999999999999


Q ss_pred             HhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc-CCHHHHHHHHhCCCCcccccc-
Q psy11230        365 VKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ-KNMSALNYLLEHGAQVDARTQ-  441 (553)
Q Consensus       365 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~-  441 (553)
                      +++|++++..+..|.||||.|+..++.+++ .|++.|++++.++..|+||||+|+.. ++.+++++|+++|++++.++. 
T Consensus       188 l~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~  267 (477)
T PHA02878        188 LSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI  267 (477)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC
Confidence            999999888888888888888888888877 67788888888888888888888865 678888888888888888775 


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC-CHHHHHHHHhc
Q psy11230        442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ-NVAILECLLVN  498 (553)
Q Consensus       442 ~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~-~~~~~~~Ll~~  498 (553)
                      .|.||||.|  .++.+++++|+++|++++..+..|.|||++|+..+ ..++.++|+.+
T Consensus       268 ~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        268 LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            688888888  46778888888888888888888888888888754 46677777655

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=289.99  Aligned_cols=422  Identities=14%  Similarity=0.121  Sum_probs=308.1

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCCccHHHHHH-hcCH-HHHHHHHHcCCCCcccCCC
Q psy11230          1 FDADVNATNKEGITLFQQAIVSSQT-PIAKLLAERGANINDPFPDDGKSCLHIAA-TKNI-RLVRLLLEYNVDVNAVDNL   77 (553)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~-~~~~-~~v~~Ll~~~~~~~~~~~~   77 (553)
                      |||+.=. ..+|.|||+.-..+.+. .-++.++..|.+++.. +.+|.+++|+-+ .+|+ |+|++|+++|+++|..+..
T Consensus        27 ~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~  104 (631)
T PHA02792         27 SGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYK-NINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNG  104 (631)
T ss_pred             cCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcC-ccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCC
Confidence            4666655 46777999999887764 4566777888888877 999999998665 5556 9999999999999999999


Q ss_pred             CCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcC-CHHHHHHHH--hcCCCCCCCCCCCCcHHHHHH
Q psy11230         78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG-NYKMVRVLI--DHGAHTECKNHQGYNALHVAV  154 (553)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g-~~~iv~~Ll--~~~~~~~~~~~~~~t~l~~~~  154 (553)
                      +.||+|+|+. ..++.|++++|++.|++++..+..|.|||+.-+... ..+.-..+-  ++|..++..+..|.||||+++
T Consensus       105 ~~~~l~ya~~-~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i  183 (631)
T PHA02792        105 INIVEKYATT-SNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI  183 (631)
T ss_pred             CCcceeEeec-CCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHH
Confidence            9999999964 239999999999999999888999999998765533 112222221  235566788999999999995


Q ss_pred             HHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcC--CHHHHHHHHHcC
Q psy11230        155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG--HQNAVKLILEKG  232 (553)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g--~~~~v~~Ll~~~  232 (553)
                      ..-          ...+        ..-+.++++.|+++|+++...     ...+.++|+.|+...  +.|+++.|++..
T Consensus       184 ~~~----------s~~~--------~~~~~~v~k~Li~~g~~~~~~-----d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        184 ITR----------SQDG--------YATSLDVINYLISHEKEMRYY-----TYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             hhC----------Cccc--------ccCCHHHHHHHHhCCCCcCcc-----CCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence            211          0000        012578889999998887642     345888899998888  888999998852


Q ss_pred             CCCcCCCCCCCcHHHHHHH--c----C--CHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCcc
Q psy11230        233 ANVHAKDQLCKTALDIAVE--H----G--HLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININ  304 (553)
Q Consensus       233 ~~~~~~~~~~~~~l~~A~~--~----~--~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~  304 (553)
                      .+...    .+..|.--.+  .    .  ...+|..|++.+......       .........+.+..++.+..      
T Consensus       241 ~~~~~----~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~-------~~~~~~~~~~~~~~~~~~~~------  303 (631)
T PHA02792        241 YSGNE----LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYIL-------ELCNSLRNNIIISSILKRYT------  303 (631)
T ss_pred             ccccc----hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchh-------hhhhhhhhhhHHHHHHHHHh------
Confidence            22111    1223322221  1    1  344888888876532221       11111222233333322211      


Q ss_pred             ccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCC--CcHH
Q psy11230        305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG--QMPL  382 (553)
Q Consensus       305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~--~~~l  382 (553)
                         ..-+..|+.....+.-+.+++++|++.|++...  ......++.|+..++.+++++|+++|++++..+..|  .|||
T Consensus       304 ---~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpL  378 (631)
T PHA02792        304 ---DSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPL  378 (631)
T ss_pred             ---HHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHH
Confidence               112234555555555677999999999999762  235567889999999999999999999999988775  6999


Q ss_pred             HHHHHcCCchH---H-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHH--hC--
Q psy11230        383 HIAVQNGYVAI---P-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE--MH--  454 (553)
Q Consensus       383 ~~a~~~~~~~~---~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~--~~--  454 (553)
                      |.|+.....++   . .++.+|++++.++..|.||||+|+..++.+++++|+++|++++.++..|+|||++|+.  .+  
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~  458 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACI  458 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhccc
Confidence            99887766543   3 5678999999999999999999999999999999999999999999999999999986  22  


Q ss_pred             ------CHHHHHHHHhcCCCCC
Q psy11230        455 ------NLSIVEQLLKFKANVN  470 (553)
Q Consensus       455 ------~~~~v~~L~~~g~~~~  470 (553)
                            ..++++.|+++|++++
T Consensus       459 ~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        459 PEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHHHHHHHhcCCChh
Confidence                  2567999999998765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-38  Score=303.98  Aligned_cols=297  Identities=28%  Similarity=0.332  Sum_probs=249.2

Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchH
Q psy11230        236 HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL  314 (553)
Q Consensus       236 ~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  314 (553)
                      +..+..+.+|||.|+..|+.++|++|++.|++++.... +.+|||+|+..|+.+.+++|++......     ...+.+++
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~~l  105 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS-----VFYTLVAI  105 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc-----cccchhhH
Confidence            33455678999999999999999999999999887655 8999999999999999999998753221     14567899


Q ss_pred             HHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCccccCCC-CCcHHHHHHHcCCc
Q psy11230        315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES--QCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYV  391 (553)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~  391 (553)
                      +.++..+..  ++++.|+..+.+......  ...+......  ...+++++|+++|++++..+.. |.||||+|+.+++.
T Consensus       106 ~~a~~~~~~--ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~  181 (477)
T PHA02878        106 KDAFNNRNV--EIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ  181 (477)
T ss_pred             HHHHHcCCH--HHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH
Confidence            999988865  999999987644322110  0111111112  2346999999999999999998 99999999999999


Q ss_pred             hHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHh-CCHHHHHHHHhcCCCC
Q psy11230        392 AIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM-HNLSIVEQLLKFKANV  469 (553)
Q Consensus       392 ~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~-~~~~~v~~L~~~g~~~  469 (553)
                      +++ .|++.|++++..+..|.||||.|+..++.+++++|+++|++++.++..|+||||+|+.. ++.+++++|+++|+++
T Consensus       182 ~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        182 RLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            988 67799999999999999999999999999999999999999999999999999999975 7899999999999999


Q ss_pred             CCCCC-CCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC-CHHHHHHHHhc-----CCCCCCC
Q psy11230        470 NSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN-NEAVINKLLDY-----NPDLDVK  542 (553)
Q Consensus       470 ~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~-----g~~~~~~  542 (553)
                      +..+. .|.||||+|  .++.+++++|+++|+|++..+.    .|.||||.|+..+ ..+++++|+.+     +.+++.+
T Consensus       262 n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~----~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~  335 (477)
T PHA02878        262 NAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS----YKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIK  335 (477)
T ss_pred             CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCccc
Confidence            98875 799999999  5788999999999999999988    8999999999864 56778887765     4577777


Q ss_pred             CCCCC
Q psy11230        543 DKNGN  547 (553)
Q Consensus       543 ~~~~~  547 (553)
                      +..|.
T Consensus       336 ~~~g~  340 (477)
T PHA02878        336 NSEGF  340 (477)
T ss_pred             CcHHH
Confidence            77664

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-38  Score=273.75  Aligned_cols=234  Identities=18%  Similarity=0.242  Sum_probs=185.9

Q ss_pred             hCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11230        284 KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL  363 (553)
Q Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~  363 (553)
                      .++.+++++|++.+.     ...+..|.||||+|+..+..  ++++.|++.|++++..+  ++||||+|+..|+.+++++
T Consensus         9 ~~~~~~~~~Lis~~a-----~~~D~~G~TpLh~Aa~~g~~--eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDA-----FKADVHGHSALYYAIADNNV--RLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCC-----CCCCCCCCcHHHHHHHcCCH--HHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHH
Confidence            466788888888643     34677788888888887765  88888888888877654  5788888888888888888


Q ss_pred             HHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHHhCCCCccccc-
Q psy11230        364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYA-KTPLHIAVEQKNMSALNYLLEHGAQVDART-  440 (553)
Q Consensus       364 Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-  440 (553)
                      |++.|++++..+..|+||||+|+..++.+++ .|+..|++++..+..| .||||+|+..|+.+++++|++++.+.  .+ 
T Consensus        80 LL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~  157 (284)
T PHA02791         80 LLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDL  157 (284)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--ccc
Confidence            8888888888888888888888888888877 5667888888777776 47888888888888888888876543  22 


Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH-HHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHH
Q psy11230        441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTV-LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL  519 (553)
Q Consensus       441 ~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~  519 (553)
                      ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+.+|+.+++++|+++|++++..+.    . .++|  
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~----~-~~~l--  230 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL----E-NVLL--  230 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc----c-CccC--
Confidence            247888888888888888888888888888888888876 8888888888888888888888888765    2 2554  


Q ss_pred             HHhhCCHHHHHHHHhcCCCC
Q psy11230        520 AVESNNEAVINKLLDYNPDL  539 (553)
Q Consensus       520 A~~~~~~~~v~~Ll~~g~~~  539 (553)
                          ++.|++++||++.++.
T Consensus       231 ----~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        231 ----DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             ----CCHHHHHHHHHhhhhh
Confidence                7888888888887763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=271.49  Aligned_cols=233  Identities=20%  Similarity=0.282  Sum_probs=190.8

Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHh
Q psy11230         22 SSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK  100 (553)
Q Consensus        22 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll  100 (553)
                      .++.+++++|++.|++.  + +.+|.||||+|+..|+ +++++|++.|++++..+  ++||||+|+..  ++.+++++|+
T Consensus         9 ~~~~~~~~~Lis~~a~~--~-D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~--g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK--A-DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCCCCC--C-CCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC--CCHHHHHHHH
Confidence            36788999999988753  3 7789999999999998 99999999988887764  68999999888  8899999999


Q ss_pred             hCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHH
Q psy11230        101 TNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYE  180 (553)
Q Consensus       101 ~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~  180 (553)
                      +.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.                        .|||++|+.
T Consensus        82 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~------------------------~TpL~~Aa~  137 (284)
T PHA02791         82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW------------------------KTSFYHAVM  137 (284)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCC------------------------cHHHHHHHH
Confidence            99999998999999999999999999999999988887765544332                        367888888


Q ss_pred             cCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-HHHHHHcCCHHHHH
Q psy11230        181 MKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTA-LDIAVEHGHLKIVE  259 (553)
Q Consensus       181 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-l~~A~~~~~~e~v~  259 (553)
                      .|+.+++++|++.+.....      ...+.+|||.|+..|+.++++.|+++|++++.++..|.+| ||+|+..|+.++++
T Consensus       138 ~g~~eivk~LL~~~~~~~d------~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        138 LNDVSIVSYFLSEIPSTFD------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             cCCHHHHHHHHhcCCcccc------cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999999987654321      1235789999999999999999999999998888888876 89999999999999


Q ss_pred             HHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhc
Q psy11230        260 FLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRN  297 (553)
Q Consensus       260 ~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  297 (553)
                      +|+++|+++.......+++      ++.|++++|+++.
T Consensus       212 lLl~~Ga~in~~~~~~~~l------~~~e~~~~ll~~~  243 (284)
T PHA02791        212 ALFKYDINIYSVNLENVLL------DDAEIAKMIIEKH  243 (284)
T ss_pred             HHHHCCCCCccCcccCccC------CCHHHHHHHHHhh
Confidence            9999999887776654444      7788888888763

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-37  Score=296.26  Aligned_cols=283  Identities=22%  Similarity=0.300  Sum_probs=188.0

Q ss_pred             HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHc-----CCHHHHHHHH
Q psy11230         59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART-----GNYKMVRVLI  133 (553)
Q Consensus        59 ~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~-----g~~~iv~~Ll  133 (553)
                      +.|+.|++.+ +++.. ..+.|+++.+.....++.+++++|+++|++++.++..|.||||.|+.+     ++.+++++|+
T Consensus        19 ~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll   96 (489)
T PHA02798         19 STVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILI   96 (489)
T ss_pred             HHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH
Confidence            5666666543 22222 234455554444434556666666666666666666666666665543     4566666666


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhh
Q psy11230        134 DHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL  213 (553)
Q Consensus       134 ~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l  213 (553)
                      ++|++++.++..|.||||+|                         +..+.                              
T Consensus        97 ~~GadiN~~d~~G~TpLh~a-------------------------~~~~~------------------------------  121 (489)
T PHA02798         97 ENGADINKKNSDGETPLYCL-------------------------LSNGY------------------------------  121 (489)
T ss_pred             HCCCCCCCCCCCcCcHHHHH-------------------------HHcCC------------------------------
Confidence            66666655555444443332                         22211                              


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHH
Q psy11230        214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH---LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIV  290 (553)
Q Consensus       214 ~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~---~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~  290 (553)
                           .++.+++++|+++|++++.++..|.||||+|+..++   .+++++|+++|+++....                  
T Consensus       122 -----~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~------------------  178 (489)
T PHA02798        122 -----INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN------------------  178 (489)
T ss_pred             -----cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc------------------
Confidence                 124566777777777777777788888888888776   777777777666543211                  


Q ss_pred             HHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHh
Q psy11230        291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIE----SQCWDAVSLLVK  366 (553)
Q Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~v~~Ll~  366 (553)
                                                                         +..+.||||.++.    .++.+++++|++
T Consensus       179 ---------------------------------------------------~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        179 ---------------------------------------------------NKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             ---------------------------------------------------CcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence                                                               1233445554443    235667777777


Q ss_pred             CCCCccccCCCCCcHHH-------HHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccc
Q psy11230        367 HGADVNVIDNQGQMPLH-------IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR  439 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~l~-------~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  439 (553)
                      +|++++..+..+.++++       .+...+...++.++..+++++.++..|+||||+|+..++.+++++|+++|++++..
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            77777666666666654       12334455666777778899999999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCC
Q psy11230        440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSS  472 (553)
Q Consensus       440 ~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~  472 (553)
                      +..|+|||+.|+..++.++++.|++++++++..
T Consensus       288 d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        288 TELGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            999999999999999999999999999887644

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.8e-37  Score=292.20  Aligned_cols=235  Identities=26%  Similarity=0.304  Sum_probs=146.8

Q ss_pred             chHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCc
Q psy11230        312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV  391 (553)
Q Consensus       312 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  391 (553)
                      ++|+.|+..+..  +++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.+|||.|+..|+.
T Consensus         4 ~~L~~A~~~g~~--~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGEL--DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCH--HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            445555555543  555555555666666666666666666666666666666666666666556666666666666666


Q ss_pred             hHH-HHHHcCCCCC-CCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCC
Q psy11230        392 AIP-NLIRHGANVN-ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV  469 (553)
Q Consensus       392 ~~~-~ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~  469 (553)
                      +++ .++..|...+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            655 4445554432 23445666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCC---CCCC
Q psy11230        470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVK---DKNG  546 (553)
Q Consensus       470 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~  546 (553)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..   .+.||+|+|+..|+.++|++|+++|++++..   +.++
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~---~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~  238 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN---GCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEE  238 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC---CCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCc
Confidence            666666666666666666666666666666666665541   2245666666666666666666666666554   3445


Q ss_pred             CCCCC
Q psy11230        547 NTALH  551 (553)
Q Consensus       547 ~t~l~  551 (553)
                      .||++
T Consensus       239 ~t~l~  243 (413)
T PHA02875        239 CTILD  243 (413)
T ss_pred             hHHHH
Confidence            55554

>KOG4412|consensus

Probab=100.00  E-value=3.4e-37  Score=231.72  Aligned_cols=190  Identities=30%  Similarity=0.436  Sum_probs=109.4

Q ss_pred             HHHHHhCCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCchHH-HHHHc-CCC
Q psy11230        328 FKTLLYHGA-NVNVKDD-ENKTPLHIAIESQCWDAVSLLVK-HGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRH-GAN  402 (553)
Q Consensus       328 ~~~l~~~~~-~~~~~~~-~~~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~-~~~  402 (553)
                      ++.+++... .++.++. +++||||+|+..|+.+++++|++ .+..++.+|..|+||||.|+..|+.+++ .|+.+ |++
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad   98 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD   98 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC
Confidence            333443333 4444444 56666666666666666666663 3455555555566666666666655555 34433 555


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230        403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL  482 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~  482 (553)
                      +|.++..|+||||+|+.+|.++++++|+++|+.++.+|..|+||||-|+.-|+++++++|+..|+.+|..|+.|+||||.
T Consensus        99 vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~  178 (226)
T KOG4412|consen   99 VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH  178 (226)
T ss_pred             cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHh
Q psy11230        483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVE  522 (553)
Q Consensus       483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~  522 (553)
                      |...++.+...+|+++|++....+.    .| ||+..|+.
T Consensus       179 al~e~~~d~a~lLV~~gAd~~~edk----e~-t~~~~a~~  213 (226)
T KOG4412|consen  179 ALAEGHPDVAVLLVRAGADTDREDK----EG-TALRIACN  213 (226)
T ss_pred             HHhccCchHHHHHHHhccceeeccc----cC-chHHHHHH
Confidence            6555556666666666665555554    44 55555443

>KOG0508|consensus

Probab=100.00  E-value=1.6e-35  Score=256.62  Aligned_cols=155  Identities=26%  Similarity=0.371  Sum_probs=146.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhh
Q psy11230         10 KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASI   88 (553)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~   88 (553)
                      =.|-.||-.|+-.|++++||.|+++|+++|.. +....|||.-||.-|+ ++|++|+++|+|++..+..|.|.||+|+..
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK  160 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc
Confidence            35788999999999999999999999999987 7788899999999999 999999999999999999999999999998


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN  168 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~  168 (553)
                        |+.+|++||++.|+++|.++..|.|+||.|+++|+.|++++|+.+|+.+.                          ++
T Consensus       161 --Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~--------------------------~d  212 (615)
T KOG0508|consen  161 --GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID--------------------------VD  212 (615)
T ss_pred             --CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee--------------------------ec
Confidence              99999999999999999999999999999999999999999999998763                          45


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        169 NFGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       169 ~~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      ..|.|||..|...|+.+++++|++.
T Consensus       213 ~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  213 GHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             CCCCchHHHHhhhcchHHHHHHhcC
Confidence            6688999999999999999999973

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=278.71  Aligned_cols=227  Identities=24%  Similarity=0.263  Sum_probs=197.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      +..++|+.|+..|+.++|++|++.|++++.. +.+|.||||+|+..|+ +++++|+++|++++..+..+.||||+|+.. 
T Consensus         1 ~~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-   78 (413)
T PHA02875          1 MDQVALCDAILFGELDIARRLLDIGINPNFE-IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-   78 (413)
T ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-
Confidence            3578999999999999999999999999987 7799999999999999 999999999999999989999999999998 


Q ss_pred             CCChHHHHHHhhCCCCcc-CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230         90 TRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN  168 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~-~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~  168 (553)
                       |+.+++++|++.|...+ ..+.+|.||||+|+..|+.+++++|+++|++++.++.                        
T Consensus        79 -g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~------------------------  133 (413)
T PHA02875         79 -GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT------------------------  133 (413)
T ss_pred             -CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC------------------------
Confidence             99999999999998764 4567799999999999999999999999998875554                        


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC-cHHH
Q psy11230        169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK-TALD  247 (553)
Q Consensus       169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~l~  247 (553)
                       .|.||||+|+..|+.+++++|+++|++++.     ....+.+|++.|+..|+.+++++|++.|++++..+..|. +|++
T Consensus       134 -~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~-----~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~  207 (413)
T PHA02875        134 -DKFSPLHLAVMMGDIKGIELLIDHKACLDI-----EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALC  207 (413)
T ss_pred             -CCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHH
Confidence             456677888888999999999988887654     245577888888888888888888888888888777764 7788


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCc
Q psy11230        248 IAVEHGHLKIVEFLLDHGACVDS  270 (553)
Q Consensus       248 ~A~~~~~~e~v~~Ll~~~~~~~~  270 (553)
                      +|+..|+.+++++|+++|++++.
T Consensus       208 ~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        208 YAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHHcCCHHHHHHHHHCCcCcch
Confidence            88888888888888888887654

>KOG4412|consensus

Probab=100.00  E-value=3.3e-36  Score=226.46  Aligned_cols=201  Identities=30%  Similarity=0.375  Sum_probs=164.2

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCC-CccccCC-CCCcHHHHHHHcCCchHHHHH--HcCCCCCCCCCCCChHHHHHHhcCC
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHGA-DVNVIDN-QGQMPLHIAVQNGYVAIPNLI--RHGANVNARNKYAKTPLHIAVEQKN  422 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~-~~~~~l~~a~~~~~~~~~~ll--~~~~~~~~~~~~~~~~l~~a~~~~~  422 (553)
                      ++.+.++......-++.+++... +.+.++. +|+||||+||+.|+.++++++  +.+..++.+|..|+||||+|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            45555666666666666666544 4555544 888889988888888888544  4566777788888889998888888


Q ss_pred             HHHHHHHHhC-CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC
Q psy11230        423 MSALNYLLEH-GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD  501 (553)
Q Consensus       423 ~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  501 (553)
                      .++|+-|+.+ |++++..+..|.||||||+..|..||+++|+++|+.++.+|..|.||||.|+.-|+.+++++|+..|+.
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            8888888887 888888888888899998888888888888888888888888888899988888888888888888888


Q ss_pred             cccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy11230        502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP  552 (553)
Q Consensus       502 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  552 (553)
                      +|..+.    .|.||||.|.-.|+.+...+|+++||+.+..|++| ||+..
T Consensus       165 ~n~qDk----~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~  210 (226)
T KOG4412|consen  165 LNTQDK----YGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRI  210 (226)
T ss_pred             CCcccc----cCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHH
Confidence            888887    78889888888888888888888888888888888 87654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-35  Score=282.57  Aligned_cols=282  Identities=21%  Similarity=0.325  Sum_probs=201.9

Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHh
Q psy11230        220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVE--HGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRR  296 (553)
Q Consensus       220 g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~--~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~  296 (553)
                      =..+.|+.|++.+. ++.. ..+.++++.+..  .++.+++++|+++|++++.... +.+||+.++...           
T Consensus        16 ~~~~~v~~ll~~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~-----------   82 (489)
T PHA02798         16 VKLSTVKLLIKSCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNI-----------   82 (489)
T ss_pred             ccHHHHHHHHhcCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhH-----------
Confidence            35778888887653 3333 345566664443  3478888888888887765433 556665554320           


Q ss_pred             cCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCccc
Q psy11230        297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLVKHGADVNV  373 (553)
Q Consensus       297 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~~~~  373 (553)
                                            .......+++++|+++|++++..+..|.||||+|+..+   +.+++++|+++|++++.
T Consensus        83 ----------------------~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~  140 (489)
T PHA02798         83 ----------------------KDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL  140 (489)
T ss_pred             ----------------------HhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc
Confidence                                  00001237778888888888888888888888888765   67888888888888888


Q ss_pred             cCCCCCcHHHHHHHcCC---chHH-HHHHcCCCCCCCC-CCCChHHHHHHhc----CCHHHHHHHHhCCCCccccccCCC
Q psy11230        374 IDNQGQMPLHIAVQNGY---VAIP-NLIRHGANVNARN-KYAKTPLHIAVEQ----KNMSALNYLLEHGAQVDARTQLGK  444 (553)
Q Consensus       374 ~~~~~~~~l~~a~~~~~---~~~~-~ll~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~Ll~~g~~~~~~~~~~~  444 (553)
                      .+..|.||||+|+..++   .+++ .|++.|++++..+ ..|.||||.++..    ++.+++++|+++|++++..+..+.
T Consensus       141 ~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~  220 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHK  220 (489)
T ss_pred             cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcccc
Confidence            88888888888887776   5655 5667788877764 4577888877654    367888888888888877777777


Q ss_pred             CHHH-------HHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHH
Q psy11230        445 DPLY-------IAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPL  517 (553)
Q Consensus       445 t~l~-------~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l  517 (553)
                      ++++       ++...++.+++++|+. +++++.++..|.||||+|+..++.+++++|+++|+|++..+.    .|.|||
T Consensus       221 ~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~----~G~TpL  295 (489)
T PHA02798        221 KKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE----LGNTCL  295 (489)
T ss_pred             chHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCC----CCCcHH
Confidence            7765       2344566777777665 478888888888888888888888888888888888888777    788888


Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230        518 HLAVESNNEAVINKLLDYNPDLDV  541 (553)
Q Consensus       518 ~~A~~~~~~~~v~~Ll~~g~~~~~  541 (553)
                      +.|+++|+.++++.|+++|++++.
T Consensus       296 ~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        296 FTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             HHHHHcCcHHHHHHHHccCCCHHH
Confidence            888888888888888888887663

>KOG0509|consensus

Probab=100.00  E-value=2.7e-33  Score=253.97  Aligned_cols=205  Identities=32%  Similarity=0.393  Sum_probs=185.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCC-CCCChHHHHHHhcCC
Q psy11230        346 KTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARN-KYAKTPLHIAVEQKN  422 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~-~~~~~~l~~a~~~~~  422 (553)
                      ...+..|++.|.++.++.|++. |.+++..|++|.++||+|+.+++.++. .++++|+++|... .-+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            3457788889999999999988 899999999999999999999999888 7778999998887 667899999999999


Q ss_pred             HHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230        423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI  502 (553)
Q Consensus       423 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  502 (553)
                      ..++++|+++|++++.+|.+|.+|+|.|+..|++-+|-+|+.+|+++|.+|.+|+||||+|+.++....+..|+.-|+.+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       503 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      ...+..   .|+||||+|+..|+..++.+|++.|++.+.+|.+|+||+.+|
T Consensus       205 ~~~d~~---~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  205 LLTDDN---HGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             cccccc---cCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHH
Confidence            988743   899999999999999999988888899999999999998765

>KOG0509|consensus

Probab=99.97  E-value=4.2e-31  Score=239.90  Aligned_cols=208  Identities=32%  Similarity=0.444  Sum_probs=188.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccC-CCCCcHHHHHHhhc
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVD-NLGNTVLHTVASIK   89 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~   89 (553)
                      .+-+..|++.|.++.||.|+|. |.+++.+ +.+|-++||+||.+|. +++++|+++|+++|... ..+.||||||++. 
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-
Confidence            5678899999999999999998 9999998 8899999999999999 99999999999999998 6899999999999 


Q ss_pred             CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230         90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN  169 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~  169 (553)
                       |++.+|.+|+++|++++.+|.+|.||||.|+..|+.-+|-||+..|++++.+|.+|                       
T Consensus       123 -G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g-----------------------  178 (600)
T KOG0509|consen  123 -GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG-----------------------  178 (600)
T ss_pred             -CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC-----------------------
Confidence             99999999999999999999999999999999999999999999988777666555                       


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHH
Q psy11230        170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIA  249 (553)
Q Consensus       170 ~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A  249 (553)
                        +|||++|+..|....++.|+..++.+..    .+...+.+|||+|+..|+..+++.+++-|.+.+..+.+|.||+..|
T Consensus       179 --rTpLmwAaykg~~~~v~~LL~f~a~~~~----~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  179 --RTPLMWAAYKGFALFVRRLLKFGASLLL----TDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             --CCHHHHHHHhcccHHHHHHHHhcccccc----cccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHH
Confidence              5667888899988889999999988775    2257889999999999999999977777788999999999999999


Q ss_pred             HHc
Q psy11230        250 VEH  252 (553)
Q Consensus       250 ~~~  252 (553)
                      .+.
T Consensus       253 ~~~  255 (600)
T KOG0509|consen  253 QER  255 (600)
T ss_pred             HHh
Confidence            877

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=229.76  Aligned_cols=204  Identities=21%  Similarity=0.226  Sum_probs=102.5

Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------ccCCCCCcHHHHHHH--cCCchHH-HHH
Q psy11230        327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN------VIDNQGQMPLHIAVQ--NGYVAIP-NLI  397 (553)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~--~~~~~~~-~ll  397 (553)
                      ..++++.+|.+++....++     +|+..+..+++++|+++|++++      .++..++|+||.++.  .++.+++ .|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            3445555555555443333     4455555555555555555544      344445555555555  4444444 444


Q ss_pred             HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc------cCCCCHHHHHHHhCCHHHHHHHHhcCCCCCC
Q psy11230        398 RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART------QLGKDPLYIAVEMHNLSIVEQLLKFKANVNS  471 (553)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~------~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~  471 (553)
                      .+|++++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|.|...++.|++++|+++|++++.
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~  216 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ  216 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc
Confidence            555555442  22455555555555555555555554221111      1244455555555555555555555555555


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC--------HHHHHHHHhcCCCCCC
Q psy11230        472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN--------EAVINKLLDYNPDLDV  541 (553)
Q Consensus       472 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~--------~~~v~~Ll~~g~~~~~  541 (553)
                      ++..|.||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+        .+++++|+++|++++.
T Consensus       217 kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~----~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        217 LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS----NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            555555555555555555555555555555555544    45555555555552        3555555555555444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=214.69  Aligned_cols=172  Identities=19%  Similarity=0.282  Sum_probs=109.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcC-
Q psy11230        343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQK-  421 (553)
Q Consensus       343 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~-  421 (553)
                      ....+||+.|+..|+.+.|+.|++.                                   ++..+..|.||||+|+..+ 
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~-----------------------------------~n~~~~~g~TpLh~a~~~~~   63 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF-----------------------------------VNDCNDLYETPIFSCLEKDK   63 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh-----------------------------------hhccCccCCCHHHHHHHcCC
Confidence            4456666666666666666666643                                   2233445556666666533 


Q ss_pred             -CHHHHHHHHhCCCCccccc-cCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--hCCHHHHHH
Q psy11230        422 -NMSALNYLLEHGAQVDART-QLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK--IQNVAILEC  494 (553)
Q Consensus       422 -~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~--~~~~~~~~~  494 (553)
                       +.+++++|+++|++++.++ ..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+.  .++.+++++
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~  143 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKL  143 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHH
Confidence             5667777777777666665 3566777766543   35667777777777777666677777776654  345667777


Q ss_pred             HHhccCCcccccccccCCCCcHHHH-HHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        495 LLVNKADINAKIISGIWKGYTPLHL-AVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       495 Ll~~g~~~~~~~~~~~~~~~t~l~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+++|++++..+.    .|.||||. |+..++.+++++|+++|++++.+|..|+||||+|
T Consensus       144 Li~~gadin~~d~----~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        144 LIDSGVSFLNKDF----DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             HHHcCCCcccccC----CCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            7777777666655    66677764 4455666777777777777777777777776654

>KOG4369|consensus

Probab=99.96  E-value=2.8e-30  Score=245.78  Aligned_cols=322  Identities=24%  Similarity=0.268  Sum_probs=242.8

Q ss_pred             CCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCC-CCCCCcHHHHHHH
Q psy11230         45 DGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKEGDTPLHIAAR  122 (553)
Q Consensus        45 ~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~L~~A~~  122 (553)
                      +-+|+|-.||.+|| |+|++|+..|+++..+|..|.+||.+|+-.  |+..+|+.|+.+-++++.. |..+.|+|.+||.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata--gh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA--GHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc--CchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            45788999999999 999999999999999999999999999887  9999999999988888755 5568899999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhc
Q psy11230        123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVC  202 (553)
Q Consensus       123 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  202 (553)
                      .|+.++|++||..|++-..++...                         +||+..|...|.++++..|+..|..++.   
T Consensus       834 ggr~~vvelLl~~gankehrnvsD-------------------------ytPlsla~Sggy~~iI~~llS~GseInS---  885 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSD-------------------------YTPLSLARSGGYTKIIHALLSSGSEINS---  885 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhh-------------------------cCchhhhcCcchHHHHHHHhhccccccc---
Confidence            999999999999998876555433                         4566667777777777777766665543   


Q ss_pred             cccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHH
Q psy11230        203 HENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAI  282 (553)
Q Consensus       203 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~  282 (553)
                                                       ..-.+.|.+||+.|..+||.+.++.|++.|.+++..-          
T Consensus       886 ---------------------------------rtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqI----------  922 (2131)
T KOG4369|consen  886 ---------------------------------RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQI----------  922 (2131)
T ss_pred             ---------------------------------ccccccCcchhhhhhhccccHHHHHHhcccchhcccc----------
Confidence                                             1123456677888888877777777777766554311          


Q ss_pred             HhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy11230        283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS  362 (553)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~  362 (553)
                                                                                 ..+..|+|-+|+..|+.+++.
T Consensus       923 -----------------------------------------------------------eTNrnTaltla~fqgr~evv~  943 (2131)
T KOG4369|consen  923 -----------------------------------------------------------ETNRNTALTLALFQGRPEVVF  943 (2131)
T ss_pred             -----------------------------------------------------------ccccccceeeccccCcchHHH
Confidence                                                                       122345666666666666666


Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCC--CCCChHHHHHHhcCCHHHHHHHHhCCCCcccc
Q psy11230        363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARN--KYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR  439 (553)
Q Consensus       363 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~  439 (553)
                      +|+...+++..+.+.|.|||+-++..|+.++- .|+..|+|.+...  ....|+|.+++..|+...+..|+...+.++..
T Consensus       944 lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~ 1023 (2131)
T KOG4369|consen  944 LLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVP 1023 (2131)
T ss_pred             HHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecc
Confidence            66666666666666666777666666666666 4556666665432  22347788888888888888888877778888


Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q psy11230        440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN  498 (553)
Q Consensus       440 ~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  498 (553)
                      +..|+|+|+.|+..|.+..+++|++++++++..+....++++.|.+.|+++||+|+...
T Consensus      1024 NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1024 NKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             cCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            88888888888888888888888888888888777778888888888888888887633

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=205.82  Aligned_cols=184  Identities=20%  Similarity=0.226  Sum_probs=125.7

Q ss_pred             ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhCCCCccccC-CCCC
Q psy11230        303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ--CWDAVSLLVKHGADVNVID-NQGQ  379 (553)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~-~~~~  379 (553)
                      .+.....+.+||++|+..+..  +.++.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++..+ ..|.
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~--~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~   88 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDI--EGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNL   88 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcH--HHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCC
Confidence            344566789999999999876  999999875   5667888999999999855  8999999999999998775 3566


Q ss_pred             cHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHH--hCCHH
Q psy11230        380 MPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE--MHNLS  457 (553)
Q Consensus       380 ~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~--~~~~~  457 (553)
                      ||||+|+..+                             ..++.+++++|+++|++++.++..|.||||+|+.  .++.+
T Consensus        89 TpLh~a~~~~-----------------------------~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~  139 (209)
T PHA02859         89 SALHHYLSFN-----------------------------KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRIN  139 (209)
T ss_pred             CHHHHHHHhC-----------------------------ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHH
Confidence            6666654321                             0124566666666666666666666666666554  24566


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHH-HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230        458 IVEQLLKFKANVNSSDQFGRTVLHL-AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN  524 (553)
Q Consensus       458 ~v~~L~~~g~~~~~~~~~~~t~l~~-A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~  524 (553)
                      ++++|+++|++++.++..|.||||. |+..++.+++++|+++|++++..+.    .|.|||++|..++
T Consensus       140 iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~----~g~tpl~la~~~~  203 (209)
T PHA02859        140 VIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK----SGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHhhhh
Confidence            6666666666666666666666663 3445566666666666666666555    5666666666553

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.1e-28  Score=220.38  Aligned_cols=244  Identities=19%  Similarity=0.155  Sum_probs=158.3

Q ss_pred             HHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCC---ccccCCCCCchHHHHHhccccChHHHHHHHh
Q psy11230        257 IVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN---INTKGPTNKAPLHLVVQRKSWNTTMFKTLLY  333 (553)
Q Consensus       257 ~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  333 (553)
                      +.+|++.+|.+++......    +|+..+..|++++|++++....-   +-.++...+|+||.++..+..+.+++++|++
T Consensus        64 ~~~~~~~~~~~i~~~~~~~----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~  139 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD  139 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH
Confidence            3467777777665543322    66677777777777766433110   1134445566666666544445566666666


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChH
Q psy11230        334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP  413 (553)
Q Consensus       334 ~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~  413 (553)
                      +|++++..  .+.||+|.|+..++.+++++|+++|++...   .+.+++                       .+..+.++
T Consensus       140 ~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n---~~~~~l-----------------------~~~~~~t~  191 (437)
T PHA02795        140 HGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDEN---DVKLDL-----------------------YKIIQYTR  191 (437)
T ss_pred             CCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc---cccchh-----------------------hhhhccch
Confidence            66666542  235566666666666666666666553211   011111                       11235578


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC-----
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN-----  488 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~-----  488 (553)
                      +|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+     
T Consensus       192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            888888888888888888888888888888888888888888888888888888888888888888888888874     


Q ss_pred             ---HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230        489 ---VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV  541 (553)
Q Consensus       489 ---~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  541 (553)
                         .+++++|+++|++++....       +++..  ...+.++++.++++...++.
T Consensus       272 ~~~~eIvelLL~~gadI~~~~~-------~~~~~--~~~n~~~ik~lI~y~~~ldy  318 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCIKL-------AILNN--TIENHDVIKLCIKYFMMVDY  318 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCchhH-------Hhhhc--ccchHHHHHHHHHHHHhccc
Confidence               5888888888888776533       33221  12267788888877765443

>KOG4369|consensus

Probab=99.96  E-value=3.3e-29  Score=238.55  Aligned_cols=326  Identities=22%  Similarity=0.251  Sum_probs=296.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCccc-CCCCCcHHHH
Q psy11230          7 ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAV-DNLGNTVLHT   84 (553)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~-~~~~~t~l~~   84 (553)
                      ++..+-.|+|..||..|+.|+|+.|+.+|+++.+. +..|.+||.+|+..|| .+|+.|+.+.+++... |..+.|+|.+
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehr-dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHR-DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhccccccc-ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            34567789999999999999999999999999988 9999999999999999 9999999999998754 6789999999


Q ss_pred             HHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCc
Q psy11230         85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI  164 (553)
Q Consensus        85 a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~  164 (553)
                      |+..  |..++|++|+..|++-..++-...|||.+|...|..+|++.|+..|++++.+..                    
T Consensus       831 acsg--gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtg--------------------  888 (2131)
T KOG4369|consen  831 ACSG--GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTG--------------------  888 (2131)
T ss_pred             ecCC--CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccc--------------------
Confidence            9988  999999999999999999999999999999999999999999999998876542                    


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230        165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT  244 (553)
Q Consensus       165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  244 (553)
                         .+.|.+||+.|..+|+.+..+.|++.|.+++...    .....+.|-.|+-.|+.++|..||.+.+.+..+-..|.|
T Consensus       889 ---SklgisPLmlatmngh~~at~~ll~~gsdiNaqI----eTNrnTaltla~fqgr~evv~lLLa~~anvehRaktglt  961 (2131)
T KOG4369|consen  889 ---SKLGISPLMLATMNGHQAATLSLLQPGSDINAQI----ETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLT  961 (2131)
T ss_pred             ---cccCcchhhhhhhccccHHHHHHhcccchhcccc----ccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCc
Confidence               3467889999999999999999999999987644    556678899999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccc---cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhcc
Q psy11230        245 ALDIAVEHGHLKIVEFLLDHGACVDSLQF---IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK  321 (553)
Q Consensus       245 ~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~---~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (553)
                      ||+.++..|.+|+=++|+..|++++....   ..+.+..++..|+...++.|+..   ...+...+..|.|+|-.++..+
T Consensus       962 plme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg 1038 (2131)
T KOG4369|consen  962 PLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGG 1038 (2131)
T ss_pred             ccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCC
Confidence            99999999999999999999999876544   56889999999999999999987   6677788889999999999888


Q ss_pred             ccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11230        322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH  367 (553)
Q Consensus       322 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  367 (553)
                      ..  ..+.+|++++++++..|....++++.|.+.|++++|++.+..
T Consensus      1039 ~l--ss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1039 AL--SSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             cc--ccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            76  889999999999999999999999999999999999998764

>KOG0502|consensus

Probab=99.95  E-value=1.7e-28  Score=191.12  Aligned_cols=205  Identities=28%  Similarity=0.332  Sum_probs=192.4

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q psy11230        341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ  420 (553)
Q Consensus       341 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  420 (553)
                      .+..|+++++.+.-.++...+..++..|...+..+..+++|+.+++...+++...++.+ ..+|..|+.|.|||.+|+.+
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~-n~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN-NKVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh-ccccCccccCchHhHHHHhc
Confidence            55669999999999999999999999999999999999999999999988887755433 45788999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC
Q psy11230        421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA  500 (553)
Q Consensus       421 ~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  500 (553)
                      |++.+|++|++.|++++..-....++|..|...|..++|++|+..+.|+|..|-+|-|||.||++-++.+|++.|++.|+
T Consensus       171 G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             CchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy11230        501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH  551 (553)
Q Consensus       501 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  551 (553)
                      +++..+.    .|++++..|+..|+- +|+..+++.+....+|..-++|+|
T Consensus       251 d~t~e~d----sGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  251 DVTQEDD----SGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             Ccccccc----cCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999999    899999999999998 999999999999999999999987

>KOG0502|consensus

Probab=99.94  E-value=2.1e-27  Score=185.16  Aligned_cols=222  Identities=27%  Similarity=0.306  Sum_probs=181.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      ++..|.+.+-.|...|+.++++.++...++.....+.+|.++++.|+-.++ +.+..++..|...|..+-.+++|+++++
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHH
Confidence            456788888888889999988888876655433335568888998888888 8888899999888888888999999988


Q ss_pred             hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccc
Q psy11230         87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV  166 (553)
Q Consensus        87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~  166 (553)
                      ..  .+.+.+-.+.++  -+|..|..|.|||.||+..|+.++|++|++.|++++..                        
T Consensus       138 hq--l~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l------------------------  189 (296)
T KOG0502|consen  138 HQ--LHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL------------------------  189 (296)
T ss_pred             HH--HHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh------------------------
Confidence            87  677776666664  46778889999999999999999999999888877533                        


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHH
Q psy11230        167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTAL  246 (553)
Q Consensus       167 ~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l  246 (553)
                       .+...++|..|++.|..++++.|+..+.+++..     ...+++||.+|++.++.++++.|+..|++++..+..|.+++
T Consensus       190 -gk~resALsLAt~ggytdiV~lLL~r~vdVNvy-----DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~m  263 (296)
T KOG0502|consen  190 -GKYRESALSLATRGGYTDIVELLLTREVDVNVY-----DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIM  263 (296)
T ss_pred             -hhhhhhhHhHHhcCChHHHHHHHHhcCCCccee-----ccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHH
Confidence             234467888889999999999999988888752     55778899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhC
Q psy11230        247 DIAVEHGHLKIVEFLLDH  264 (553)
Q Consensus       247 ~~A~~~~~~e~v~~Ll~~  264 (553)
                      ..|+..|+. +|+..+++
T Consensus       264 dlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  264 DLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             HHHHHhhhH-HHHHHHHH
Confidence            999999887 66666654

>KOG0507|consensus

Probab=99.94  E-value=8.4e-27  Score=214.86  Aligned_cols=211  Identities=29%  Similarity=0.331  Sum_probs=193.5

Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHH
Q psy11230        337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLH  415 (553)
Q Consensus       337 ~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~  415 (553)
                      ..+..|.++.|.||.|+.+|+.+++++|+++.+-.+..+..|.+|||+|+.+|+.+++ .++..+..+|..+..|.+|||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLH  120 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccc
Confidence            4567788999999999999999999999999999999999999999999999999999 556777778889999999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHhC
Q psy11230        416 IAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN--------VNSSDQFGRTVLHLAVKIQ  487 (553)
Q Consensus       416 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~--------~~~~~~~~~t~l~~A~~~~  487 (553)
                      .|+++|+.+++.+|+++|+++-..+..+.|++..|++.|..++++.|++...+        -..++-.+.+|+|+|+++|
T Consensus       121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            99999999999999999999999999999999999999999999999987332        1234556789999999999


Q ss_pred             CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy11230        488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP  552 (553)
Q Consensus       488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  552 (553)
                      +.++++.|++.|.++|..+.    .| |+||-|+..|..++|.+|++.|.+..++|.+|.|+|++
T Consensus       201 h~~~~~~ll~ag~din~~t~----~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  201 HVECMQALLEAGFDINYTTE----DG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             hHHHHHHHHhcCCCcccccc----cc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHH
Confidence            99999999999999999987    44 99999999999999999999999999999999999864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.9e-25  Score=226.29  Aligned_cols=187  Identities=20%  Similarity=0.288  Sum_probs=155.0

Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCc
Q psy11230        358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV  436 (553)
Q Consensus       358 ~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~  436 (553)
                      .++...+.+.+..  ..+..+.++|+.|+..|+.++. .+++.|++++..|..|+||||+|+.+|+.+++++|+++|+++
T Consensus       507 l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi  584 (823)
T PLN03192        507 LNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV  584 (823)
T ss_pred             ccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            3344444444332  2233456889999999988877 777889999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcH
Q psy11230        437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTP  516 (553)
Q Consensus       437 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~  516 (553)
                      +.+|..|+||||+|+..|+.+++++|++.+...+.  ..+.++||.|+.+|+.+++++|+++|++++..+.    .|.||
T Consensus       585 n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~----~G~Tp  658 (823)
T PLN03192        585 HIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH----QGATA  658 (823)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC----CCCCH
Confidence            99999999999999999999999999987765543  3467899999999999999999999999998877    89999


Q ss_pred             HHHHHhhCCHHHHHHHHhcCCCCCCCCCCC-CCCCCC
Q psy11230        517 LHLAVESNNEAVINKLLDYNPDLDVKDKNG-NTALHP  552 (553)
Q Consensus       517 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~l~~  552 (553)
                      ||+|+..|+.+++++|+++|++++.+|..| .||+++
T Consensus       659 Lh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l  695 (823)
T PLN03192        659 LQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL  695 (823)
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999888 777654

>KOG0507|consensus

Probab=99.93  E-value=9.8e-26  Score=207.90  Aligned_cols=236  Identities=26%  Similarity=0.312  Sum_probs=209.8

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230          2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT   80 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t   80 (553)
                      ...+|.+|-+|.|+||.||.+|+.++++.|++..+-++.+ +..|.+|||+|+-.|+ +++++|+.++.-+|..+.+|.|
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~t  117 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENET  117 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcC
Confidence            3568999999999999999999999999999999999988 7999999999999999 9999999999889999999999


Q ss_pred             HHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhC
Q psy11230         81 VLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK  160 (553)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~  160 (553)
                      |||.|+..  ++.+++.+|+.+|+++-.++..+.|+|..|++.|+.++|+.|++....+..               +...
T Consensus       118 plhlaaqh--gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~---------------~~~~  180 (854)
T KOG0507|consen  118 PLHLAAQH--GHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQS---------------SLRV  180 (854)
T ss_pred             ccchhhhh--cchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhh---------------cccC
Confidence            99999998  999999999999999999999999999999999999999999987333221               1111


Q ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q psy11230        161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQ  240 (553)
Q Consensus       161 ~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~  240 (553)
                      +  -..++..+.+|+|.|+++|+.++++.|+..|.+++.      ....++++|.|+..|..++|.+|++.|.....++.
T Consensus       181 ~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~------~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~  252 (854)
T KOG0507|consen  181 G--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY------TTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQ  252 (854)
T ss_pred             C--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc------ccccchhhhhHhhcCcchhhhHHHhhccccccccc
Confidence            2  234556788999999999999999999999999987      77889999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHHh
Q psy11230        241 LCKTALDIAVEHG---HLKIVEFLLD  263 (553)
Q Consensus       241 ~~~~~l~~A~~~~---~~e~v~~Ll~  263 (553)
                      +|+|+|..-...-   ..|++-++..
T Consensus       253 ~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  253 HGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             cchHHHHHHHhcchhhhhhhhhhhhc
Confidence            9999998766543   4556655554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=177.20  Aligned_cols=143  Identities=22%  Similarity=0.332  Sum_probs=132.2

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-H---HHHHHHHcCCCCcc
Q psy11230          2 DADVNATNKEGITLFQQAIVSSQT----PIAKLLAERGANINDPFPDDGKSCLHIAATKNI-R---LVRLLLEYNVDVNA   73 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~---~v~~Ll~~~~~~~~   73 (553)
                      ++|++..++++.++||.||+.|+.    +++++|++.|..++.+ +..|+||||+|+..|. +   ++++|++.|++++.
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            688999999999999999999998    6777888999998877 8899999999999887 4   48999999999999


Q ss_pred             cC-CCCCcHHHHHHhhcCCChHHHHHHhh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230         74 VD-NLGNTVLHTVASIKTRDPTAVEILKT-NRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGY  147 (553)
Q Consensus        74 ~~-~~~~t~l~~a~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  147 (553)
                      ++ ..|+||||+|+..  ++.+++++|++ .|++++.++..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~--g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAAST--KNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHh--CCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            98 5899999999998  99999999995 8999999999999999999999999999999999999998887764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=9.9e-25  Score=222.55  Aligned_cols=222  Identities=23%  Similarity=0.261  Sum_probs=166.0

Q ss_pred             CchHHHHHhccccChHHHHHHHhC--CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q psy11230        311 KAPLHLVVQRKSWNTTMFKTLLYH--GANVNVKDDENKTPLH-IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ  387 (553)
Q Consensus       311 ~~~l~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~t~l~-~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  387 (553)
                      ...++.|+..+..  +.++.+++.  +.++|..|..|.|||| .|+..++.++++.|++.|.    .+..|.||||.|+.
T Consensus        18 ~~~~l~A~~~g~~--~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        18 EKAFLPAAERGDL--ASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHcCCH--HHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            3444555555543  555555555  6677777888888888 7778888888888888876    45678888888887


Q ss_pred             cCCchHHHHH---H-cCCC------C----CCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-------------
Q psy11230        388 NGYVAIPNLI---R-HGAN------V----NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-------------  440 (553)
Q Consensus       388 ~~~~~~~~ll---~-~~~~------~----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-------------  440 (553)
                      .+...+..++   . .+.+      .    ...+..|.||||+|+.+|+.+++++|+++|++++...             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            4433322222   2 1111      0    1123468999999999999999999999999998653             


Q ss_pred             -cCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC---------CHHHHHHHHhccCCcccc---cc
Q psy11230        441 -QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ---------NVAILECLLVNKADINAK---II  507 (553)
Q Consensus       441 -~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~---------~~~~~~~Ll~~g~~~~~~---~~  507 (553)
                       ..|++||+.|+..|+.+++++|+++|++++..|..|+||||+|+..+         ...+.+++++.+......   ..
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence             25889999999999999999999999999999999999999999986         334667777776554222   11


Q ss_pred             cccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        508 SGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       508 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      ..|..|.||||.|+..|+.+++++|++.+.+
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK  282 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHHHHHh
Confidence            1223899999999999999999999996544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=5e-24  Score=173.32  Aligned_cols=146  Identities=15%  Similarity=0.178  Sum_probs=131.4

Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCH----HHHHHHHhCCCCccccccCCCCHHHHHHHhCCHH---HHHHHHhcCCCCCC
Q psy11230        399 HGANVNARNKYAKTPLHIAVEQKNM----SALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS---IVEQLLKFKANVNS  471 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~---~v~~L~~~g~~~~~  471 (553)
                      ++++++..+..+.++||.|++.|+.    +++++|++.|..++..+..|+||||+|+..|+.+   ++++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4566666777888999999999998    6677888899999999999999999999998865   48999999999999


Q ss_pred             CC-CCCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy11230        472 SD-QFGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT  548 (553)
Q Consensus       472 ~~-~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  548 (553)
                      ++ ..|.||||+|+..++.+++++|++ .|++++..+.    .|.||||+|+..++.+++++|+++|++++.++..|.+
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~----~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY----QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            98 589999999999999999999995 7999998876    8999999999999999999999999999999998864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.9e-23  Score=212.63  Aligned_cols=180  Identities=26%  Similarity=0.375  Sum_probs=163.4

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc
Q psy11230        342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ  420 (553)
Q Consensus       342 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~  420 (553)
                      +....++|+.|+..|+.++++.|++.|++++..|..|+||||.|+..|+.+++ .|+++|++++.++..|+||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999988 67788999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC
Q psy11230        421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA  500 (553)
Q Consensus       421 ~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  500 (553)
                      |+.+++++|++.+...+.  ..+.++||.|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999999988766543  457799999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCC-CcHHHHHHhhCCHH
Q psy11230        501 DINAKIISGIWKG-YTPLHLAVESNNEA  527 (553)
Q Consensus       501 ~~~~~~~~~~~~~-~t~l~~A~~~~~~~  527 (553)
                      +++..+.    .| .||+..+......+
T Consensus       680 dv~~~~~----~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        680 DVDKANT----DDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCCCCCC----CCCCCHHHHHHHHHHhh
Confidence            9999877    55 88988776654333

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=3.3e-23  Score=211.47  Aligned_cols=191  Identities=24%  Similarity=0.279  Sum_probs=142.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCccHHH-HHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHH
Q psy11230          9 NKEGITLFQQAIVSSQTPIAKLLAER--GANINDPFPDDGKSCLH-IAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHT   84 (553)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~~l~-~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~   84 (553)
                      =..+..+|+.|+..|+.+.|+.+++.  +.+++.. +..|+|||| .|+.+++ +++++|++.|+    .+..|.||||.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHA   88 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHH
Confidence            35668999999999999999999998  8888877 889999999 8888888 99999999987    56789999999


Q ss_pred             HHhhcC-CChHHHHHHhhCCCC------c----cCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230         85 VASIKT-RDPTAVEILKTNRAN------V----NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA  153 (553)
Q Consensus        85 a~~~~~-~~~~~~~~Ll~~~~~------~----~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~  153 (553)
                      |+.... +...++.++...+..      +    ......|.||||+|+.+|+.++|++|+++|++++.++..... .   
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~-~---  164 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFF-V---  164 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh-h---
Confidence            987211 222334444443321      1    112356999999999999999999999999998744322100 0   


Q ss_pred             HHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCC
Q psy11230        154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA  233 (553)
Q Consensus       154 ~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~  233 (553)
                                                             .....+      ....+.++++.|+..|+.++++.|++.|+
T Consensus       165 ---------------------------------------~~~~~~------~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       165 ---------------------------------------KSQGVD------SFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             ---------------------------------------cCCCCC------cccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence                                                   000000      02245577777777788888888888888


Q ss_pred             CCcCCCCCCCcHHHHHHHcC
Q psy11230        234 NVHAKDQLCKTALDIAVEHG  253 (553)
Q Consensus       234 ~~~~~~~~~~~~l~~A~~~~  253 (553)
                      +++.++..|+||||+|+..+
T Consensus       200 din~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             chhhHhhhhhHHHHHHHhhh
Confidence            88888888999999998876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.91  E-value=6.9e-24  Score=178.70  Aligned_cols=161  Identities=25%  Similarity=0.350  Sum_probs=140.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCccHHHHHHhcC-----H-HHHHHHHHcCCCCcccC-C
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGA-NINDPFPDDGKSCLHIAATKN-----I-RLVRLLLEYNVDVNAVD-N   76 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~l~~A~~~~-----~-~~v~~Ll~~~~~~~~~~-~   76 (553)
                      ||.-|+||+|+||+|+.-+|.++|+.|++.|. +++.. +.-|.||+++|+..-     + ++|+.|..-| ++|.+- .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            78999999999999999999999999999765 77777 999999999998543     3 7888888765 666554 4


Q ss_pred             CCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHH
Q psy11230         77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI  156 (553)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~  156 (553)
                      .|.|+||+|+..  |..++|+.|+..|+++|.+|.+|.|+|++||+.||.|||++||..                     
T Consensus       339 ~gQTALMLAVSH--Gr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~---------------------  395 (452)
T KOG0514|consen  339 HGQTALMLAVSH--GRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV---------------------  395 (452)
T ss_pred             hcchhhhhhhhc--CcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc---------------------
Confidence            899999999998  999999999999999999999999999999999999999999974                     


Q ss_pred             HHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       157 l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                         ..++....|..|.|+|.+|...|+.||.-+|..+
T Consensus       396 ---p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  396 ---PSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ---CcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence               2345566777888899999999999998777654

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=166.30  Aligned_cols=132  Identities=27%  Similarity=0.421  Sum_probs=121.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCccHHHHHHhcCH-----HHHHHHHHcCCCCcc
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAE------RGANINDPFPDDGKSCLHIAATKNI-----RLVRLLLEYNVDVNA   73 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~~~~l~~A~~~~~-----~~v~~Ll~~~~~~~~   73 (553)
                      ++.+|..|.||||+|+..|+.++|+.|++      .|++++.. +..|.||||+|+..|+     +++++|++.|++++.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            67899999999999999999999999865      35778777 8889999999999985     789999999999999


Q ss_pred             cCC-CCCcHHHHHHhhcCCChHHHHHHhh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy11230         74 VDN-LGNTVLHTVASIKTRDPTAVEILKT-NRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT  139 (553)
Q Consensus        74 ~~~-~~~t~l~~a~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~  139 (553)
                      ++. .|+||||+|+..  ++.+++++|++ .|++++.++.+|+|||++|+..|+.+++++|+++++..
T Consensus        93 ~~~~~g~TpLh~A~~~--~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         93 QEMLEGDTALHLAAHR--RDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCcCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            985 899999999999  99999999997 69999999999999999999999999999999987653

>KOG0505|consensus

Probab=99.88  E-value=1.8e-22  Score=179.76  Aligned_cols=215  Identities=31%  Similarity=0.419  Sum_probs=143.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCC
Q psy11230        326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVN  404 (553)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~  404 (553)
                      +-+..|+..|+.++..+.+|.|++|-++...+.++|++|+++|++++..|..++||+|.|+..++..++ .++..|+++.
T Consensus        54 ~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~  133 (527)
T KOG0505|consen   54 EEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLL  133 (527)
T ss_pred             HHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhh
Confidence            455555555555555555555555555555555555555555555555555555555555555555555 4445555555


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHh-CCCCccccccC-CCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230        405 ARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQL-GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL  482 (553)
Q Consensus       405 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~-~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~  482 (553)
                      ..+..|..|...+..--..+++..-+. .|.+++.--.. -++-|        -++-+++. .|...+.++..|.|.||.
T Consensus       134 avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml--------~D~~q~l~-~G~~~d~~~~rG~T~lHv  204 (527)
T KOG0505|consen  134 AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTML--------DDARQWLN-AGAELDARHARGATALHV  204 (527)
T ss_pred             hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHH--------HHHHHHHh-ccccccccccccchHHHH
Confidence            555555555555554444444444433 23322110000 00000        12334444 788888888779999999


Q ss_pred             HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+.+|..+..++|+++|.+++..+.    +|.||||.|+.=|..+++++|+++|++++.++..|.|||.+|
T Consensus       205 Aaa~Gy~e~~~lLl~ag~~~~~~D~----dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  205 AAANGYTEVAALLLQAGYSVNIKDY----DGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             HHhhhHHHHHHHHHHhccCcccccc----cCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            9999999999999999999999987    899999999999999999999999999999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=7.7e-22  Score=172.24  Aligned_cols=127  Identities=24%  Similarity=0.249  Sum_probs=107.3

Q ss_pred             ccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCC---CCCCccHHHHHHhcCH-HHHHHHHHcCCCCccc-CCCC
Q psy11230          5 VNATNKEGITL-FQQAIVSSQTPIAKLLAERGANINDPF---PDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAV-DNLG   78 (553)
Q Consensus         5 ~~~~~~~g~~~-l~~A~~~g~~~~v~~Ll~~g~~~~~~~---~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~-~~~~   78 (553)
                      +-++|+.|.|+ |+.|+..|+.++|++|++.|++++.+.   +..|.||||+|+..++ +++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            34677777775 555556688999999999999988762   3579999999999998 9999999999999986 4579


Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI  133 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll  133 (553)
                      .||||+|+..  ++.+++++|+++|++++.++..|+||||+|+..++.+++..+.
T Consensus       105 ~TpLh~Aa~~--~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        105 ITPLYISVLH--GCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            9999999988  8999999999999999999999999999999988888876654

>KOG0505|consensus

Probab=99.88  E-value=3.2e-22  Score=178.21  Aligned_cols=224  Identities=28%  Similarity=0.353  Sum_probs=124.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChH
Q psy11230         16 FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPT   94 (553)
Q Consensus        16 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   94 (553)
                      |..||..|.++-|..|+..|++++.. +.+|.|+||-++.-.+ +||++|+++|+++|..|..+|||+|.|+..  ++..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc--g~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLC-NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC--GYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCcccc-CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc--ccHH
Confidence            44455555555555555555555544 5555555555555555 555555555555555555555555555554  5555


Q ss_pred             HHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCC
Q psy11230         95 AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKT  173 (553)
Q Consensus        95 ~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~  173 (553)
                      ++++|+.+|+++...+.+|..|+..|..--..++...-... |.+                                   
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-----------------------------------  165 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-----------------------------------  165 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-----------------------------------
Confidence            55555555555555555555555555444444433333221 111                                   


Q ss_pred             HHHHHHHcCC---HHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHH
Q psy11230        174 AFQMAYEMKN---FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAV  250 (553)
Q Consensus       174 ~l~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~  250 (553)
                       +..+-..-.   ..-+...+..|...+..     ...+.+.+|.|+..|..++.++|++.|.+++.+|.+|++|||.|+
T Consensus       166 -iea~R~~~e~~ml~D~~q~l~~G~~~d~~-----~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  166 -IEAARKAEEQTMLDDARQWLNAGAELDAR-----HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHhcccccccc-----ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence             111111111   11122223344443321     122566777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHH
Q psy11230        251 EHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIE  283 (553)
Q Consensus       251 ~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~  283 (553)
                      .+|+.++.+.|+++|++++.... +.+|+..|..
T Consensus       240 ~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  240 HWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            77777777777777777766554 5666666543

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=160.23  Aligned_cols=132  Identities=22%  Similarity=0.337  Sum_probs=116.6

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHh------CCCCccccccCCCCHHHHHHHhCC----HHHHHHHHhcCCCCCCC
Q psy11230        403 VNARNKYAKTPLHIAVEQKNMSALNYLLE------HGAQVDARTQLGKDPLYIAVEMHN----LSIVEQLLKFKANVNSS  472 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~------~g~~~~~~~~~~~t~l~~A~~~~~----~~~v~~L~~~g~~~~~~  472 (553)
                      ++.++..|.||||+|++.|+.+++++|+.      .|++++.++..|+||||+|+..|+    .+++++|+++|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34566788999999999999999998854      367888899999999999999998    58999999999999988


Q ss_pred             CC-CCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        473 DQ-FGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       473 ~~-~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      +. .|+||||+|+..++.+++++|++ .|++++..+.    .|.|||++|+..|+.+++++|++.++.
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~----~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA----DNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC----CCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            85 89999999999999999999997 5999988877    899999999999999999999998775

>KOG0514|consensus

Probab=99.87  E-value=7.9e-22  Score=166.39  Aligned_cols=160  Identities=28%  Similarity=0.414  Sum_probs=122.5

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHHcC-----CchHH-HHHHcCCCCCCC-CCC
Q psy11230        338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVNVIDNQGQMPLHIAVQNG-----YVAIP-NLIRHGANVNAR-NKY  409 (553)
Q Consensus       338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~-----~~~~~-~ll~~~~~~~~~-~~~  409 (553)
                      +|..|.+|.|+|||++..+++++|+.|++.| ++++..++-|+||++.++...     ...++ .|+.- .++|.+ ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhh
Confidence            5677899999999999999999999999884 788999999999999887432     22233 44443 355554 235


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCC
Q psy11230        410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAVKIQN  488 (553)
Q Consensus       410 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~~~~~t~l~~A~~~~~  488 (553)
                      |+|+|++|+.+|+.++|+.|+..|+|+|.+|.+|.|+|+.|++.||.||+++|+.. ++|+..+|.+|-|+|.+|...|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            77888888888888888888888888888888888888888888888888877765 66777777777788888877777


Q ss_pred             HHHHHHHHhc
Q psy11230        489 VAILECLLVN  498 (553)
Q Consensus       489 ~~~~~~Ll~~  498 (553)
                      .+|.-+|+.+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            7777777654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9.8e-22  Score=159.00  Aligned_cols=131  Identities=25%  Similarity=0.394  Sum_probs=112.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCCccHHHHHHhcCH----HHHHHHHHcCCCCcc
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGA--N-----INDPFPDDGKSCLHIAATKNI----RLVRLLLEYNVDVNA   73 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~--~-----~~~~~~~~~~~~l~~A~~~~~----~~v~~Ll~~~~~~~~   73 (553)
                      ++.+|.+|.||||+||..|+.  ++.+...+.  +     +... +..|.||||+|+..|.    +++++|++.|++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            578899999999999999984  344333222  2     1223 7789999999999986    468999999999999


Q ss_pred             cCC-CCCcHHHHHHhhcCCChHHHHHHhh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy11230         74 VDN-LGNTVLHTVASIKTRDPTAVEILKT-NRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTE  140 (553)
Q Consensus        74 ~~~-~~~t~l~~a~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~  140 (553)
                      ++. .|+||||+|+..  ++.+++++|++ .|++++.++..|+||||+|+..|+.+++++|+++|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~--~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYT--QNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHh--CCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            984 899999999998  99999999997 599999999999999999999999999999999998764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=156.78  Aligned_cols=132  Identities=21%  Similarity=0.235  Sum_probs=104.0

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhCCC-------CccccccCCCCHHHHHHHhCCH---HHHHHHHhcCCCCCCCC
Q psy11230        404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGA-------QVDARTQLGKDPLYIAVEMHNL---SIVEQLLKFKANVNSSD  473 (553)
Q Consensus       404 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~-------~~~~~~~~~~t~l~~A~~~~~~---~~v~~L~~~g~~~~~~~  473 (553)
                      +..+..|.||||+|++.|+.  ++++...+.       .+...+..|+||||+|+..|+.   +++++|+++|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            44566788888888888873  333322211       1234577889999999988876   46888999999998887


Q ss_pred             -CCCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230        474 -QFGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV  541 (553)
Q Consensus       474 -~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  541 (553)
                       ..|.||||+|+..++.+++++|++ .|++++..+.    .|.||||+|+..|+.+++++|+++|+++++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~----~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY----AFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence             489999999999999999999997 4888888777    889999999999999999999999988653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.6e-20  Score=161.85  Aligned_cols=154  Identities=23%  Similarity=0.225  Sum_probs=128.8

Q ss_pred             cccCCCCCc-HHHHHHHcCCchHH-HHHHcCCCCCCCC----CCCChHHHHHHhcCCHHHHHHHHhCCCCcccc-ccCCC
Q psy11230        372 NVIDNQGQM-PLHIAVQNGYVAIP-NLIRHGANVNARN----KYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGK  444 (553)
Q Consensus       372 ~~~~~~~~~-~l~~a~~~~~~~~~-~ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~~~  444 (553)
                      ..++..+++ +|+.|+..++.+++ .|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            345666665 56666777888888 6779999999874    58999999999999999999999999999986 45799


Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230        445 DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN  524 (553)
Q Consensus       445 t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~  524 (553)
                      ||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++..+.  |...+.       .+.+|++++   +
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~---~  173 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNEISN-------FYKHPKKIL---I  173 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCcccc-------cccChhhhh---c
Confidence            9999999999999999999999999999999999999999999888876664  333222       456788865   4


Q ss_pred             CHHHHHHHHhcCC
Q psy11230        525 NEAVINKLLDYNP  537 (553)
Q Consensus       525 ~~~~v~~Ll~~g~  537 (553)
                      +.+++++|+++++
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            7899999999988

>KOG0512|consensus

Probab=99.84  E-value=1.1e-20  Score=141.99  Aligned_cols=85  Identities=34%  Similarity=0.407  Sum_probs=44.2

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230        403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL  482 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~  482 (553)
                      +|.+|.+|.||||.|+.+|+++|++.|+..|++++.+...|+||||.|++.++.+++.+|+++|+|++.......||||+
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhl  169 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHL  169 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555554445555555


Q ss_pred             HHHhC
Q psy11230        483 AVKIQ  487 (553)
Q Consensus       483 A~~~~  487 (553)
                      |+...
T Consensus       170 aa~~r  174 (228)
T KOG0512|consen  170 AAGNR  174 (228)
T ss_pred             hhccc
Confidence            55443

>KOG0512|consensus

Probab=99.83  E-value=2.1e-19  Score=135.13  Aligned_cols=135  Identities=27%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCC
Q psy11230         14 TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD   92 (553)
Q Consensus        14 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (553)
                      ..+.+|+..|.+..|+.|++..++.-...+.+|.||||-|+++|+ ++|+.|+..|++.+.+...||||||-|+.-  .+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW--nN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW--NN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc--cc
Confidence            467889999999999999987776433348899999999999999 999999999999999999999999998877  99


Q ss_pred             hHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCH-HHHHHHHh-cCCCCCCCCCCCCcHH
Q psy11230         93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY-KMVRVLID-HGAHTECKNHQGYNAL  150 (553)
Q Consensus        93 ~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~-~iv~~Ll~-~~~~~~~~~~~~~t~l  150 (553)
                      .+++..|+++|+++|......+||||.||.+.+. ..+.+|+. .+..+...+..+.||+
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~  202 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF  202 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence            9999999999999999999899999999887754 44555543 3333433344443333

>KOG0195|consensus

Probab=99.81  E-value=1.6e-19  Score=147.67  Aligned_cols=115  Identities=35%  Similarity=0.422  Sum_probs=76.9

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHH
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVL   82 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l   82 (553)
                      |.|.-|.-|.+|||+||+.|+..+|+.|+.+|+.++.. +.-..||||+|+.-|| ++|..|++..+|+|..++.|+|||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            45666666666666666666666666666666666655 5555666666666666 666666666666666666666666


Q ss_pred             HHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230         83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA  121 (553)
Q Consensus        83 ~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~  121 (553)
                      |||+.-  |.-.+++=|+..|+.++..+.+|.|||..|-
T Consensus       105 hyacfw--gydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  105 HYACFW--GYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhh--cHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            666666  6666666666666666666666666666653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=6e-19  Score=128.00  Aligned_cols=89  Identities=38%  Similarity=0.532  Sum_probs=55.7

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCH
Q psy11230        447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE  526 (553)
Q Consensus       447 l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~  526 (553)
                      ||+|++.|+++++++|++.+.+++.    |.||||+|+.+|+.+++++|+++|++++..+.    .|.||||+|+.+|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDK----NGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST----TSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCC----CCCCHHHHHHHcCCH
Confidence            4566666666666666666655554    55666666666666666666666666666654    566666666666666


Q ss_pred             HHHHHHHhcCCCCCCCC
Q psy11230        527 AVINKLLDYNPDLDVKD  543 (553)
Q Consensus       527 ~~v~~Ll~~g~~~~~~~  543 (553)
                      +++++|+++|++++.+|
T Consensus        73 ~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHcCCCCCCcC
Confidence            66666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.5e-18  Score=125.97  Aligned_cols=88  Identities=42%  Similarity=0.610  Sum_probs=82.1

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE  493 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  493 (553)
                      ||+|++.|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.++..|+||||+|+.+++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7899999999999999999988876    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCcccc
Q psy11230        494 CLLVNKADINAK  505 (553)
Q Consensus       494 ~Ll~~g~~~~~~  505 (553)
                      +|+++|++++.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.78  E-value=2.5e-19  Score=146.53  Aligned_cols=131  Identities=30%  Similarity=0.347  Sum_probs=115.3

Q ss_pred             HHcCCHHHHHHHHH-cCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHH
Q psy11230         20 IVSSQTPIAKLLAE-RGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVE   97 (553)
Q Consensus        20 ~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~   97 (553)
                      |+.||.=.|+.-++ ..-+.+.- +..|.+|||+||+.|+ .+|+.|++.|+.+|..+.-..||||+|+..  |+.++|+
T Consensus         8 cregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah--ghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH--GHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc--ccHHHHH
Confidence            44455444444443 33344443 7789999999999999 999999999999999999999999999998  9999999


Q ss_pred             HHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230         98 ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA  153 (553)
Q Consensus        98 ~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~  153 (553)
                      .|+++.+++|..+..|.|||||||.-|...|++-|+..|+-++..+..|.||+..|
T Consensus        85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            99999999999999999999999999999999999999999999999999999887

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.7e-17  Score=130.54  Aligned_cols=125  Identities=40%  Similarity=0.623  Sum_probs=117.3

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHH
Q psy11230          6 NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHT   84 (553)
Q Consensus         6 ~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~   84 (553)
                      +.+|..|.|||+.|+..|+.+++++|++.|.+.+.. +..|.+|+++|+..+. +++++|++.++.++..+..+.||+|+
T Consensus         1 ~~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             CCcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            346789999999999999999999999999987666 8899999999999999 99999999999999989999999999


Q ss_pred             HHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11230         85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI  133 (553)
Q Consensus        85 a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll  133 (553)
                      |+..  ++.+++++|++.|.+++..+..+.||+++|...++.+++++|+
T Consensus        80 a~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHc--CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9998  9999999999999999999999999999999999999999984

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=2.9e-17  Score=129.30  Aligned_cols=124  Identities=40%  Similarity=0.598  Sum_probs=115.3

Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy11230        406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK  485 (553)
Q Consensus       406 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~  485 (553)
                      .+..|.|||+.|+..++.+++++|++.+.+.+..+..|.+|+++|+..++.+++++|++.|++++..+..+.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999888889999999999999999999999999999888888999999999999


Q ss_pred             hCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHH
Q psy11230        486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL  533 (553)
Q Consensus       486 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  533 (553)
                      .++.+++++|+++|.+.+..+.    .+.||++.|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDK----DGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCC----CCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999988888776    7899999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.73  E-value=8.6e-17  Score=151.54  Aligned_cols=178  Identities=27%  Similarity=0.330  Sum_probs=142.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC---------CCCCCCCCCCCccHHHHHHh---cCH-HHHHHHHHcCC----CCc-cc
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAERG---------ANINDPFPDDGKSCLHIAAT---KNI-RLVRLLLEYNV----DVN-AV   74 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~~~~~~l~~A~~---~~~-~~v~~Ll~~~~----~~~-~~   74 (553)
                      ..++..|...|.++....|...+         .+++.. ...|+|.||.|..   .++ ++++.|++.-.    ++- ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            36777788888888777777655         445444 6778899998875   345 88888887421    111 12


Q ss_pred             CCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCC-----------------------CCCCCcHHHHHHHcCCHHHHHH
Q psy11230         75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-----------------------NKEGDTPLHIAARTGNYKMVRV  131 (553)
Q Consensus        75 ~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~-----------------------~~~~~t~L~~A~~~g~~~iv~~  131 (553)
                      ...|.||||+|+..  .+.++|++|++.|+|++.+                       =..|..||.+||..++.|||++
T Consensus       181 eY~GqSaLHiAIv~--~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  181 EYYGQSALHIAIVN--RDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hhcCcchHHHHHHh--ccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            34788999999888  8889999999999887543                       1247789999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHH--------HHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        132 LIDHGAHTECKNHQGYNALHVAV--------GILLRKGAD--INVENNFGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       132 Ll~~~~~~~~~~~~~~t~l~~~~--------~~l~~~~~~--~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      |+++|||++.+|..|.|.||.++        +++++.+.+  ...++..|.|||..|+..|..++.+.+++.
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999999983        567888888  888999999999999999999999999988

>KOG3676|consensus

Probab=99.71  E-value=1.2e-16  Score=150.55  Aligned_cols=185  Identities=27%  Similarity=0.331  Sum_probs=134.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCC---------CCccccCCCCCcHHHHHHHcCCc---hHH-HHHHcC----CCCC-CCCC
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHG---------ADVNVIDNQGQMPLHIAVQNGYV---AIP-NLIRHG----ANVN-ARNK  408 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~---------~~~~~~~~~~~~~l~~a~~~~~~---~~~-~ll~~~----~~~~-~~~~  408 (553)
                      .++..+...+..+....++..+         .+.+.+...|.|.||.|.-+.+.   ++. .|++--    .++- ...-
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4455555555555554444333         33444445566777777654322   222 222110    0111 1123


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCcccc---------c--------------cCCCCHHHHHHHhCCHHHHHHHHhc
Q psy11230        409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDAR---------T--------------QLGKDPLYIAVEMHNLSIVEQLLKF  465 (553)
Q Consensus       409 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------~--------------~~~~t~l~~A~~~~~~~~v~~L~~~  465 (553)
                      .|+||||+|+.+.+.++|++|++.|+|++.+         |              ..|+.||-.|+-.++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            5889999999999999999999998887642         1              1367899999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC--cccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD--INAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       466 g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      |+|++..|..|+|.||..+..-..+|.++++++|++  ....+.    +|.|||..|++.|+.++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~----qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNN----QGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccccc----CCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999998  555555    899999999999999999999988

>KOG4214|consensus

Probab=99.70  E-value=9.9e-17  Score=106.83  Aligned_cols=104  Identities=25%  Similarity=0.307  Sum_probs=93.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      ..+.+++++|..+-|+-.+..|.+++-.- .|++|||+|+-.|.+++++||+..|++++.+|+.|.|||..|+..|+.+|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            34778999999999999999888887654 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCcHHHHH
Q psy11230        492 LECLLVNKADINAKIISGIWKGYTPLHLA  520 (553)
Q Consensus       492 ~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A  520 (553)
                      |++|+++|++.....+    +|.+.+..+
T Consensus        83 VklLL~~GAdrt~~~P----dG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAP----DGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCC----CchhHHhhc
Confidence            9999999999988877    776665543

>KOG4214|consensus

Probab=99.63  E-value=1.6e-15  Score=101.09  Aligned_cols=96  Identities=26%  Similarity=0.306  Sum_probs=45.4

Q ss_pred             HHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHH
Q psy11230         50 LHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM  128 (553)
Q Consensus        50 l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~i  128 (553)
                      +.|++++|. +-|+-.+..|.++|..- .|++|||+|+-+  |+.+++++|+..|++++.+|.+|-|||.-|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~--GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADY--GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhc--chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            344444444 44444444444444332 444455554444  44555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCCCCCCCCCCCc
Q psy11230        129 VRVLIDHGAHTECKNHQGYN  148 (553)
Q Consensus       129 v~~Ll~~~~~~~~~~~~~~t  148 (553)
                      |++|++.|++-..+...|.+
T Consensus        83 VklLL~~GAdrt~~~PdG~~  102 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTA  102 (117)
T ss_pred             HHHHHHcCcccceeCCCchh
Confidence            55555555544444444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=7.4e-14  Score=123.25  Aligned_cols=129  Identities=32%  Similarity=0.372  Sum_probs=110.8

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCC-----HHHHHHHHhcCC---CCCCCCCC
Q psy11230        404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN-----LSIVEQLLKFKA---NVNSSDQF  475 (553)
Q Consensus       404 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-----~~~v~~L~~~g~---~~~~~~~~  475 (553)
                      ...+..+.++++.++..+..+++++++..|++++..+..|.||+|+|+..++     .+++++|++.|+   ..+..+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3445557788899998898888889999998888888899999999999988     899999999988   55566888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       476 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      |+||||+|+..|+.+++++|++.|++++..+.    .|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNS----YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCccccc----CCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999998888866    7889999999999999999998854

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=6.2e-14  Score=123.77  Aligned_cols=129  Identities=35%  Similarity=0.449  Sum_probs=114.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH------HHHHHHHHcCC---CCcccC
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI------RLVRLLLEYNV---DVNAVD   75 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~------~~v~~Ll~~~~---~~~~~~   75 (553)
                      .+.++..+.++++.|+..+..++++++++.|++++.. +.+|.||+|+|+..++      ++++.|++.|+   ..+..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            3456677899999999999999999999999999666 9999999999998874      89999999999   566668


Q ss_pred             CCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy11230         76 NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG  136 (553)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  136 (553)
                      ..|+||||+|+..  ++.+++++|++.|++++.++..|.|++++|+..++.++++.+++.+
T Consensus       145 ~~g~tpl~~A~~~--~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALN--GDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHc--CchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999998  8889999999999999999999999999999999999999999875

>KOG0515|consensus

Probab=99.55  E-value=2.2e-14  Score=127.81  Aligned_cols=118  Identities=23%  Similarity=0.301  Sum_probs=101.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCC
Q psy11230         14 TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD   92 (553)
Q Consensus        14 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (553)
                      -+|.-|+..|-+|+|+..+..--|++.+ +..|-|+||.|+..|| +||++|++.|+++|..|+.||||||.||.+  ++
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC--Nn  628 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQP-NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC--NN  628 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCC-CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc--Cc
Confidence            3567788999999999999988899888 9999999999999999 999999999999999999999999999988  99


Q ss_pred             hHHHHHHhhCCCCccCCC-CCCCcHHHHH--HHcCCHHHHHHHHh
Q psy11230         93 PTAVEILKTNRANVNIKN-KEGDTPLHIA--ARTGNYKMVRVLID  134 (553)
Q Consensus        93 ~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A--~~~g~~~iv~~Ll~  134 (553)
                      ..+|+.|++.|+-+-... .++.|+..-+  -+.|..++.+||..
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999997765443 5577777665  34678899999864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=5.6e-15  Score=94.74  Aligned_cols=55  Identities=42%  Similarity=0.561  Sum_probs=28.3

Q ss_pred             HHhcc-CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        495 LLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       495 Ll~~g-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+++| .+++..+.    .|+||||+|+.+|+.++|++|++.|++++++|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~----~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK----YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T----TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC----CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56666 67777766    788888888888888888888888888888888888888876

>KOG0515|consensus

Probab=99.50  E-value=8.4e-14  Score=124.12  Aligned_cols=118  Identities=24%  Similarity=0.215  Sum_probs=108.5

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE  493 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~  493 (553)
                      |.-|+..|.+++|+-.+..-.|+...+..|-|+||-|+-.||.+||+||+++|+++|..|.+||||||+|+.++++-+.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            45688899999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCcccccccccCCCCcHHHHHHhh--CCHHHHHHHHh
Q psy11230        494 CLLVNKADINAKIISGIWKGYTPLHLAVES--NNEAVINKLLD  534 (553)
Q Consensus       494 ~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~--~~~~~v~~Ll~  534 (553)
                      .|+++|+-+-+.+.+   ++.|+..-+-+.  |+..+.+||..
T Consensus       634 qLVe~GaavfAsTlS---DmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLS---DMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecc---cccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999888876   788888776654  89999999974

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=8.7e-14  Score=89.01  Aligned_cols=54  Identities=37%  Similarity=0.616  Sum_probs=41.9

Q ss_pred             CCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11230         78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI  133 (553)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll  133 (553)
                      |+||||+|+..  |+.+++++|++.|.+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~--g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARS--GNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHT--T-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHh--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67888888887  8888888888888888888888888899888888888888885

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=3.1e-13  Score=134.72  Aligned_cols=103  Identities=25%  Similarity=0.290  Sum_probs=79.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      ..|+.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35777788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhc-------cCCcccccccccCCCCcHHH
Q psy11230        492 LECLLVN-------KADINAKIISGIWKGYTPLH  518 (553)
Q Consensus       492 ~~~Ll~~-------g~~~~~~~~~~~~~~~t~l~  518 (553)
                      +++|+++       |++++....    .|.+|+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~----~g~~~~~  193 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSF----TGKPPSL  193 (664)
T ss_pred             HHHHHhCCCcccccCCCCCcccc----CCCCccc
Confidence            8888877       666655544    5666655

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.9e-14  Score=89.99  Aligned_cols=50  Identities=48%  Similarity=0.634  Sum_probs=16.7

Q ss_pred             CCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHH
Q psy11230         69 VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA  120 (553)
Q Consensus        69 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A  120 (553)
                      ++++..|..|+||||+|++.  ++.+++++|++.|++++.+|.+|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~--g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARY--GHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHH--T-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHc--CcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44444444444444444444  444444444444444444444444444443

>KOG1710|consensus

Probab=99.46  E-value=6.1e-13  Score=109.46  Aligned_cols=118  Identities=27%  Similarity=0.236  Sum_probs=95.3

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCCH
Q psy11230        411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS-SDQFGRTVLHLAVKIQNV  489 (553)
Q Consensus       411 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~-~~~~~~t~l~~A~~~~~~  489 (553)
                      ..||..++..++.+.+.-|++---.++..|..|.++|..|+..|+.++++.|++.|+|+|. .+..++||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4678888888888888888776555777888888888888888888888888888888875 356678888888888888


Q ss_pred             HHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230        490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL  532 (553)
Q Consensus       490 ~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  532 (553)
                      ++-++|++.|+.+...+.    .|+|+-++|+.-|+.++|..+
T Consensus        93 dvcrllldaGa~~~~vNs----vgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNS----VGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hHHHHHHhccCccccccc----hhhhHHHHHHHhcchHHHHHH
Confidence            888888888888887766    788888888888888887765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.9e-13  Score=87.42  Aligned_cols=28  Identities=46%  Similarity=0.578  Sum_probs=9.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230        478 TVLHLAVKIQNVAILECLLVNKADINAK  505 (553)
Q Consensus       478 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  505 (553)
                      ||||+|+..|+.+++++|+++|.+++..
T Consensus         3 t~lh~A~~~g~~~~~~~Ll~~~~din~~   30 (54)
T PF13637_consen    3 TPLHWAARSGNLEIVKLLLEHGADINAQ   30 (54)
T ss_dssp             BHHHHHHHTT-HHHHHHHHHTTSGTT-B
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence            3333333333333333333333333333

...

>KOG1710|consensus

Probab=99.46  E-value=5.8e-13  Score=109.56  Aligned_cols=121  Identities=27%  Similarity=0.239  Sum_probs=111.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCccc-CCCCCcHHHHHHhh
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAV-DNLGNTVLHTVASI   88 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~-~~~~~t~l~~a~~~   88 (553)
                      .-.++|..|+-.|.++-...|+..--+++.. +.+|-++|..|+..|. ++|+.|++.|+|+|.. +..+.||||+||.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            3467999999999999999999876667777 9999999999999999 9999999999999865 46899999999999


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID  134 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  134 (553)
                        |+.+++++|++.|+.....+.-|+|+-.+|+.-|+.++|..+=.
T Consensus        90 --Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 --GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             --CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence              99999999999999999999999999999999999999988743

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=4.9e-13  Score=133.29  Aligned_cols=103  Identities=27%  Similarity=0.297  Sum_probs=96.3

Q ss_pred             HHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHH
Q psy11230         49 CLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK  127 (553)
Q Consensus        49 ~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~  127 (553)
                      .|+.|+..|+ +.++.|++.|++++..|..|+||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~--g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN--GHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            4888999999 999999999999999999999999999998  9999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-------CCCCCCCCCCCCcHHHHH
Q psy11230        128 MVRVLIDH-------GAHTECKNHQGYNALHVA  153 (553)
Q Consensus       128 iv~~Ll~~-------~~~~~~~~~~~~t~l~~~  153 (553)
                      ++++|+++       |++.+..+..|.+|+...
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999998       888888888888776544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.96  E-value=1.2e-09  Score=58.97  Aligned_cols=29  Identities=34%  Similarity=0.465  Sum_probs=25.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANIN   39 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~   39 (553)
                      +|+||||+||..|+.|+|++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58899999999999999999999998875

>PF13606 Ank_3: Ankyrin repeat

Probab=98.95  E-value=1.3e-09  Score=58.74  Aligned_cols=29  Identities=48%  Similarity=0.941  Sum_probs=23.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy11230        112 EGDTPLHIAARTGNYKMVRVLIDHGAHTE  140 (553)
Q Consensus       112 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~  140 (553)
                      +|+||||+||..|+.|+|++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888775

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.87  E-value=3.9e-09  Score=59.08  Aligned_cols=32  Identities=31%  Similarity=0.625  Sum_probs=26.4

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCC
Q psy11230        513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDK  544 (553)
Q Consensus       513 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  544 (553)
                      |.||||+|+.+|+.+++++|+++|++++.+|.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            67888888888888888888888888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.86  E-value=7.5e-10  Score=105.03  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=57.2

Q ss_pred             ccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCC
Q psy11230        436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY  514 (553)
Q Consensus       436 ~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  514 (553)
                      .+++|..|+|+||+|+..+..++++||+++|+++...| ..|+||||.|+.+|+++|+-+|+.+|+.....+.    .|.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk----egl  120 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK----EGL  120 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc----cCC
Confidence            45666677777777777777777777777777776665 3467777777777777777777777766666666    677


Q ss_pred             cHHHHHHh
Q psy11230        515 TPLHLAVE  522 (553)
Q Consensus       515 t~l~~A~~  522 (553)
                      .||++-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            77765544

>KOG0818|consensus

Probab=98.83  E-value=1.6e-08  Score=90.33  Aligned_cols=85  Identities=24%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             HHHHHHhcCH-HHHHHHHHcCCCCcccCC-CCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy11230         49 CLHIAATKNI-RLVRLLLEYNVDVNAVDN-LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY  126 (553)
Q Consensus        49 ~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~  126 (553)
                      -||-.++.|+ ++.-.|+..|+++|..+. .|.||||.|++.  |+..=+++|+-||++++..|..|+||+.+|-..||-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~--Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA--GQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc--cchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            3888889898 999999999999998875 899999999998  999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy11230        127 KMVRVLIDH  135 (553)
Q Consensus       127 ~iv~~Ll~~  135 (553)
                      ++.+.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            999998874

>KOG0782|consensus

Probab=98.82  E-value=1.8e-08  Score=91.57  Aligned_cols=119  Identities=22%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN--VNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~--~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      +..|+..+++--++-...+|.++-.++.+..+.||+|++.|+-|+|+||+++|+.  ++..+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4556666776666667778888888899999999999999999999999999985  56678889999999999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       492 ~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      .++|++.|+.....+.    .|.||-..|-+.|+.++..||-+.-
T Consensus       950 c~~lvdagasl~ktd~----kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDS----KGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHhcchhheeccc----CCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999988877    8999999999999999999997653

>KOG0782|consensus

Probab=98.81  E-value=1.7e-08  Score=91.77  Aligned_cols=117  Identities=23%  Similarity=0.304  Sum_probs=100.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCC--CcccCCCCCcHHHHHHhhcCCC
Q psy11230         16 FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVD--VNAVDNLGNTVLHTVASIKTRD   92 (553)
Q Consensus        16 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~   92 (553)
                      +..|+..+.+=-+.-....|.++... +.+..+.||+|++-|. ++|+|++++|..  ++..+..|.|+||.|+..  ++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~--~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ--RN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh--cc
Confidence            56677776654444455577777666 7788899999999999 999999999865  678889999999999998  99


Q ss_pred             hHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy11230         93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH  135 (553)
Q Consensus        93 ~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  135 (553)
                      ..++++|++.|+.+-.+|..|.||-..|-..|+.|+..||-.+
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999999998653

>KOG0818|consensus

Probab=98.78  E-value=3.1e-08  Score=88.57  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=85.9

Q ss_pred             cccCCCCCc------HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCC
Q psy11230          6 NATNKEGIT------LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLG   78 (553)
Q Consensus         6 ~~~~~~g~~------~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~   78 (553)
                      .-+|.+|.+      .||..++.|++++.-.|+..|+++|+.....|.||||.|++.|. --+++|.=+|+|+...|..|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            345666555      59999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhC
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTN  102 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~  102 (553)
                      .||+.+|-..  |+-++.+-|++.
T Consensus       201 mtP~~~AR~~--gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQG--GHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhc--CchHHHHHHHHH
Confidence            9999999988  898887777653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.77  E-value=1.3e-08  Score=56.96  Aligned_cols=32  Identities=41%  Similarity=0.843  Sum_probs=24.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy11230        112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKN  143 (553)
Q Consensus       112 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~  143 (553)
                      +|+||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            46788888888888888888888888776654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.74  E-value=5.6e-09  Score=99.32  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=70.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      +|.+|.-|+|+||.|+..|...++++|++.|++++.++...|.||||-|+..|+ |++-.|+.+|++....|+.|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            677888888888888888888888888888888888877788888888888888 8888888888888888888888887


Q ss_pred             HHHhh
Q psy11230         84 TVASI   88 (553)
Q Consensus        84 ~a~~~   88 (553)
                      ..++.
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            77664

>KOG0506|consensus

Probab=98.73  E-value=1.2e-08  Score=90.66  Aligned_cols=90  Identities=22%  Similarity=0.223  Sum_probs=83.2

Q ss_pred             CCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhh-CCCCccCCCCCCCcHHHHHHH
Q psy11230         45 DGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKT-NRANVNIKNKEGDTPLHIAAR  122 (553)
Q Consensus        45 ~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~A~~  122 (553)
                      ++...+++|++.|. ..++.+.-.|.|.+.+|...+|+||.||..  |+++++++|++ .+.+++.+|..|+|||.-|..
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE--G~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE--GHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc--CceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34567999999999 999999999999999999999999999998  99999999998 679999999999999999999


Q ss_pred             cCCHHHHHHHHhcC
Q psy11230        123 TGNYKMVRVLIDHG  136 (553)
Q Consensus       123 ~g~~~iv~~Ll~~~  136 (553)
                      .+|.+++++|-+.-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998753

>KOG0506|consensus

Probab=98.72  E-value=1.7e-08  Score=89.70  Aligned_cols=93  Identities=19%  Similarity=0.272  Sum_probs=80.2

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHh
Q psy11230        408 KYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAVKI  486 (553)
Q Consensus       408 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~~~~~t~l~~A~~~  486 (553)
                      .++...+++|++.|++..++-+.-.|.|++..|.+.+|+||.|+.-|+.++++||++. +.+++.+|+.|+|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3455778899999999999888888899999999999999999999999999999976 788888999999999999999


Q ss_pred             CCHHHHHHHHhccC
Q psy11230        487 QNVAILECLLVNKA  500 (553)
Q Consensus       487 ~~~~~~~~Ll~~g~  500 (553)
                      ++.+++++|-+...
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999998876643

>KOG2384|consensus

Probab=98.69  E-value=4.5e-08  Score=76.06  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCC
Q psy11230          1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERG-ANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDN   76 (553)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~   76 (553)
                      ++.+||.+|..|+|+|++|+..|+.+.|.||+++| +.+-.. +..|.+++.+|-+.|+ ++|+.|-+...+-...+.
T Consensus         1 se~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~-d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    1 SEGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVT-DESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccc-ccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            46799999999999999999999999999999999 666555 8999999999999999 999999997555444443

>KOG3609|consensus

Probab=98.63  E-value=1.7e-07  Score=90.49  Aligned_cols=117  Identities=28%  Similarity=0.355  Sum_probs=67.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHhC--C--CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy11230        412 TPLHIAVEQKNMSALNYLLEH--G--AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ  487 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~--g--~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~  487 (553)
                      .-+..|+++|+...|+..++.  .  .++|..|.-|+++|+.|+.+.+.|++++|+++....       ..+|.+|+..+
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence            335556666666666555542  1  334555555666666666666666666666554332       34566666666


Q ss_pred             CHHHHHHHHhccCCcc----------cccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC
Q psy11230        488 NVAILECLLVNKADIN----------AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL  539 (553)
Q Consensus       488 ~~~~~~~Ll~~g~~~~----------~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  539 (553)
                      ...+++.++.+.....          ....    .+.|||..|+..++++|+++|+++|+++
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft----~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFT----PDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCC----CCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            6666666665532221          1111    4557777777777777777777777753

>KOG0705|consensus

Probab=98.51  E-value=4.7e-07  Score=82.92  Aligned_cols=90  Identities=26%  Similarity=0.321  Sum_probs=74.8

Q ss_pred             HHHHHhcCH-HHHHHHHHcCCC--C--cccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcC
Q psy11230         50 LHIAATKNI-RLVRLLLEYNVD--V--NAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG  124 (553)
Q Consensus        50 l~~A~~~~~-~~v~~Ll~~~~~--~--~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g  124 (553)
                      |.-|....+ ..+-+|+.+|..  +  ...+..|+|+||+|++.  +++.+.++|+-+|+++-.+|..|+|+|.||-..|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~--gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK--GNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh--cchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            555666666 788888888754  2  23456789999999998  9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCC
Q psy11230        125 NYKMVRVLIDHGAHTEC  141 (553)
Q Consensus       125 ~~~iv~~Ll~~~~~~~~  141 (553)
                      ..+++..|+++|+..+.
T Consensus       706 sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDEC  722 (749)
T ss_pred             cHHHHHHHHHcCCCccc
Confidence            99999999999887654

>KOG0705|consensus

Probab=98.49  E-value=4.5e-07  Score=83.02  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCcc----ccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy11230        414 LHIAVEQKNMSALNYLLEHGAQVD----ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNV  489 (553)
Q Consensus       414 l~~a~~~~~~~~~~~Ll~~g~~~~----~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~  489 (553)
                      |..|+...++..+-+|+.+|....    ..+..|+|+||+|+..|++.+.++|+-+|+|+-.+|..|+|+|.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            445566666666677776664332    2233456777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhccCCcc
Q psy11230        490 AILECLLVNKADIN  503 (553)
Q Consensus       490 ~~~~~Ll~~g~~~~  503 (553)
                      +|+..|+.+|....
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            77777777765443

>KOG3609|consensus

Probab=98.43  E-value=1e-06  Score=85.28  Aligned_cols=123  Identities=25%  Similarity=0.290  Sum_probs=99.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHH
Q psy11230         10 KEGITLFQQAIVSSQTPIAKLLAERGA----NINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHT   84 (553)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~   84 (553)
                      ..+.-.+..|+..|+...|+..++...    +++.. +.-|++++++|..+.+ +++++|++.+...       ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcCcccc-------chHHHH
Confidence            345556889999999999999998433    34444 7789999999999999 9999999987655       456778


Q ss_pred             HHhhcCCChHHHHHHhhCCCCcc----------CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy11230         85 VASIKTRDPTAVEILKTNRANVN----------IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK  142 (553)
Q Consensus        85 a~~~~~~~~~~~~~Ll~~~~~~~----------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  142 (553)
                      |++.  +..++|++++.+.....          ..-.-+.|||..||..+++||++.|+++|+.+..+
T Consensus        95 aI~~--~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   95 AIAV--GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHH--HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            8888  99999999998765431          22344679999999999999999999999987654

>KOG2384|consensus

Probab=98.37  E-value=1.3e-06  Score=68.12  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCC-CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCC
Q psy11230        400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ  474 (553)
Q Consensus       400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~  474 (553)
                      +.++|.+|.+|+|+++.|+..|+.+.+.||+.+| +.+...+..|.+++.+|-+.|..++++.|.++..+-..++.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            4578999999999999999999999999999999 88999999999999999999999999999998665544443

>KOG0522|consensus

Probab=98.26  E-value=2.5e-06  Score=77.80  Aligned_cols=85  Identities=34%  Similarity=0.438  Sum_probs=58.9

Q ss_pred             HHHHHHhcCH--HHHHHHHH-cCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCC
Q psy11230         49 CLHIAATKNI--RLVRLLLE-YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN  125 (553)
Q Consensus        49 ~l~~A~~~~~--~~v~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~  125 (553)
                      ++|+++-...  .+.+.|.. ....++.+|..|+||||+|+..  |+.+.++.|+..|+++..+|..||+|||-|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L--g~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL--GHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh--cCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            4777766555  34443333 2445677777777777777777  77777777777777777777777777777777777


Q ss_pred             HHHHHHHHhc
Q psy11230        126 YKMVRVLIDH  135 (553)
Q Consensus       126 ~~iv~~Ll~~  135 (553)
                      .+++.-++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            7776666653

>KOG0511|consensus

Probab=98.25  E-value=2.7e-06  Score=73.87  Aligned_cols=70  Identities=24%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA  153 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~  153 (553)
                      |-.|++.  |+++.|++|++.|.++|.+|....+||.+|+..||.++|++|+++||-...-..+|..++.-|
T Consensus        40 lceacR~--GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   40 LCEACRA--GDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHhhc--ccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            3344444  667777777776666766666666777777777777777777777666655555555554444

>KOG0520|consensus

Probab=98.24  E-value=1.1e-06  Score=87.11  Aligned_cols=129  Identities=19%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCHHHHHHHH-HcCCCCcccCCCCCcH
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNIRLVRLLL-EYNVDVNAVDNLGNTV   81 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~~~v~~Ll-~~~~~~~~~~~~~~t~   81 (553)
                      .+..+.-.|.+.+|.++..+...+++.+++- |...... +.+|...+|+++..|.+.+-+|+ -.|..++.+|..|+||
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcc
Confidence            4556667788888888888888888888875 5554444 77777788886666664444444 4677788888888888


Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCcc------CCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVN------IKNKEGDTPLHIAARTGNYKMVRVLIDH  135 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  135 (553)
                      ||||+..  |+..++..|.+.|++..      .....|.|+-..|..+|+..+.-||-+.
T Consensus       645 L~wAa~~--G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFR--GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhc--CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888887  88888888887665543      2334577888888888888888887764

>KOG0520|consensus

Probab=98.21  E-value=2.8e-06  Score=84.29  Aligned_cols=129  Identities=25%  Similarity=0.241  Sum_probs=106.0

Q ss_pred             CCCCccHHHHHHhcCH-HHHHHHHHc-CCCCcccCCCCCcHHHHHHhhcCCChHHHHHH-hhCCCCccCCCCCCCcHHHH
Q psy11230         43 PDDGKSCLHIAATKNI-RLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHI  119 (553)
Q Consensus        43 ~~~~~~~l~~A~~~~~-~~v~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~L-l~~~~~~~~~~~~~~t~L~~  119 (553)
                      ...|.+-+|+++..++ .+++.+++- |......|..|...+|+|+.   +.++..-+| .-.|..++.+|..||||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~---lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA---LGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh---cCCceeEEEEeecccccccccCCCCcccch
Confidence            6679999999999999 999999996 77777778888889999776   455554444 45889999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       120 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      |+..|+..++.-|.+.|++....                   .++......|.|+-..|..+|+..+.-+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~-------------------tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAV-------------------TDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccc-------------------cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998876421                   22334456788999999999998888888766

>KOG0522|consensus

Probab=98.20  E-value=4.9e-06  Score=75.99  Aligned_cols=64  Identities=33%  Similarity=0.481  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q psy11230        401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK  464 (553)
Q Consensus       401 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~  464 (553)
                      ..++..|..|+||||+|+..|+.+.++.|+.+|+++..++..|+++||.|+..|+.+++..++.
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            3455556666666666666666666666666666666666666666666666666665555554

>KOG0511|consensus

Probab=98.18  E-value=8e-06  Score=71.07  Aligned_cols=117  Identities=21%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      --|..|++.|+++.|++|++.|+++|..|....+||.+|...||..+|++|+++|+=-+.-..+|.. -+|++.+.++  
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaLnd~I--  114 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGALNDRI--  114 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhhhHHH--
Confidence            3478899999999999999999999999999999999999999999999999999754332233433 3555544332  


Q ss_pred             HHHHHhcc----CCcccccccccCCCCcHHHHHHhhCCH-----HHHHHHHhcCCCCC
Q psy11230        492 LECLLVNK----ADINAKIISGIWKGYTPLHLAVESNNE-----AVINKLLDYNPDLD  540 (553)
Q Consensus       492 ~~~Ll~~g----~~~~~~~~~~~~~~~t~l~~A~~~~~~-----~~v~~Ll~~g~~~~  540 (553)
                      =+.|++..    .+...+         .+-|+-+...+.     .=+.++.+.|+.++
T Consensus       115 R~mllsydi~KA~d~~qP---------~aahi~s~l~dt~l~~~~di~f~~q~g~~f~  163 (516)
T KOG0511|consen  115 RRMLLSYDILKAFDARQP---------PAAHIQSSLRDTFLGCCHDIDFLQQEGANFD  163 (516)
T ss_pred             HHHHHHHHHHHHhhccCC---------cchHHHHHhhccccccccchHHHhhcccccc
Confidence            23333332    122222         223333333332     23678888888754

>KOG0521|consensus

Probab=97.98  E-value=7.6e-06  Score=81.93  Aligned_cols=90  Identities=36%  Similarity=0.331  Sum_probs=72.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHH
Q psy11230        442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAV  521 (553)
Q Consensus       442 ~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~  521 (553)
                      .|.|+||.|+..|..-++++|+++|+++|..+..|++|+|.+...|+...+..|+++|++++..+.    .|.+|+++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~----~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP----DGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc----cCcchhhHHh
Confidence            467888888888888888888888888888888888888888888888888888888888888877    7888888887


Q ss_pred             hhCCHHHHHHHHhc
Q psy11230        522 ESNNEAVINKLLDY  535 (553)
Q Consensus       522 ~~~~~~~v~~Ll~~  535 (553)
                      +..+.+++-+|.-.
T Consensus       731 ~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  731 EAANADIVLLLRLA  744 (785)
T ss_pred             hhccccHHHHHhhh
Confidence            77666666665543

>KOG0521|consensus

Probab=97.95  E-value=1e-05  Score=80.97  Aligned_cols=74  Identities=34%  Similarity=0.523  Sum_probs=44.4

Q ss_pred             CCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230         78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA  153 (553)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~  153 (553)
                      |.|+||.|+..  +..-++++|+++|+++|..+..|+||+|.+...|+...+..|+++|++.+..+..|.+|+.++
T Consensus       656 ~~s~lh~a~~~--~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  656 GCSLLHVAVGT--GDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             ccchhhhhhcc--chHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            45556665555  555556666666666666666666666666666666666666666666666666666666555

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.70  E-value=0.00023  Score=57.65  Aligned_cols=117  Identities=21%  Similarity=0.225  Sum_probs=82.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc----CCCCCCCCCCCCcHHHHHHHh--
Q psy11230        413 PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF----KANVNSSDQFGRTVLHLAVKI--  486 (553)
Q Consensus       413 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~----g~~~~~~~~~~~t~l~~A~~~--  486 (553)
                      .|.-|+...+++-+.-++....       ...++|.+|+.++..+++.+|+..    ..++-... .+.--+.|+...  
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~  227 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHS  227 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcC
Confidence            4667777777777777665321       124678888888888888888864    11211111 123345555543  


Q ss_pred             CCHHHHHHHHhcc-CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       487 ~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      .+..++++++++| +++|......+ .|.|.|+-|.++++-+++.+||++||-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~N-SGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVN-SGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccC-CcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4678999999998 68888766555 899999999999999999999999994

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=97.43  E-value=0.00025  Score=64.54  Aligned_cols=65  Identities=23%  Similarity=0.177  Sum_probs=43.1

Q ss_pred             HHHHHHHHhccCCcccccccc--cCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        489 VAILECLLVNKADINAKIISG--IWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       489 ~~~~~~Ll~~g~~~~~~~~~~--~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      .+.+++|.+++++.|......  ++-..|+||+|+..|.-.+|.+||+.|+||..+|..|.||+.++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            456667777766665433221  11244777777777777777777777777777777777777654

>smart00248 ANK ankyrin repeats

Probab=97.19  E-value=0.00076  Score=36.05  Aligned_cols=28  Identities=50%  Similarity=0.756  Sum_probs=19.3

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        513 GYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       513 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                      |.||+++|+..++.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4567777777777777777777766543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.06  E-value=0.0012  Score=35.25  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANI   38 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~   38 (553)
                      +|.|+|++|+..|+.+++++|++.|.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4678888888888888888888877754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.01  E-value=0.0092  Score=47.31  Aligned_cols=137  Identities=20%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHH
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL  426 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  426 (553)
                      -.+..|+..+.+.+++..-+...+.   -...++.+..||+..+.+++.++.....+...    .+.+..|....++++.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~----~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIYNP----EDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCCCc----hhhhhhhhhccchhHH
Confidence            3466677777777777666542211   12334556666666666666666443333211    2455666666665542


Q ss_pred             H----HHHhCCCCcccccc--CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy11230        427 N----YLLEHGAQVDARTQ--LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL  496 (553)
Q Consensus       427 ~----~Ll~~g~~~~~~~~--~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  496 (553)
                      .    +++++...-...+.  --..-|..|+..|-+..+.-.+++|-+++      .++|..|+.+++.+++.+++
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc------HHHHHHHHHhhHHHHHHHhh
Confidence            1    11122111100000  00123455555555555555555554443      14555555555555555554

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.72  E-value=0.017  Score=47.26  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccC----CCCCcHHHHHHhhc
Q psy11230         15 LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVD----NLGNTVLHTVASIK   89 (553)
Q Consensus        15 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~----~~~~t~l~~a~~~~   89 (553)
                      .|..|+..-|.+-+.-++..        ..+..+++.+|+..+. +++.+|++. ......|    +.+.--+.|+-+..
T Consensus       156 sledAV~AsN~~~i~~~Vtd--------KkdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD--------KKDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc--------hHHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhc
Confidence            36778888888887777653        2344678999998888 999999974 1111111    23444677777766


Q ss_pred             CCChHHHHHHhhCC-CCccC---CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy11230         90 TRDPTAVEILKTNR-ANVNI---KNKEGDTPLHIAARTGNYKMVRVLIDHGAHT  139 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~-~~~~~---~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~  139 (553)
                      +-+..+.++.++.| +++|.   +-..|.|-|.-|...++.+++..|+++||-.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            67889999999988 55553   3467999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=96.70  E-value=0.0029  Score=57.97  Aligned_cols=61  Identities=25%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             HHHHHHHHcCCCCcc------cCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230         59 RLVRLLLEYNVDVNA------VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA  121 (553)
Q Consensus        59 ~~v~~Ll~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~  121 (553)
                      +.+++|.+++++.|.      .+....|+||+|+..  +..++|.+||+.|+|+...|..|+||...+.
T Consensus       405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q--g~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ--GARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcCCcccccccccccccccchHHHHHHhc--chHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            666667666655432      234455666666665  6666666666666666666666666666655

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.35  E-value=0.022  Score=45.30  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHhC--CCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCC
Q psy11230        356 QCWDAVSLLVKH--GADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG  433 (553)
Q Consensus       356 ~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g  433 (553)
                      .++++++...+.  ++++       ...+..|+..+.+.+...........  -...++.+..||+..+.++|+|+-++ 
T Consensus        29 qdp~~FEkCH~l~~~c~~-------~CLl~HAVk~nmL~ILqkyke~L~~~--~~~~q~LFElAC~~qkydiV~WI~qn-   98 (192)
T PF03158_consen   29 QDPETFEKCHELNNSCDM-------WCLLYHAVKYNMLSILQKYKEDLENE--RYLNQELFELACEEQKYDIVKWIGQN-   98 (192)
T ss_pred             cCHHHHHHHHHhhccCCH-------HHHHHHHHHcCcHHHHHHHHHHhhcc--hhHHHHHHHHHHHHccccHHHHHhhc-
Confidence            445666655443  3333       23677888888888874443322211  12456889999999999999999543 


Q ss_pred             CCccccccCCCCHHHHHHHhCCHHHH----HHHHhcCCCCCCCCC--CCCcHHHHHHHhCCHHHHHHHHhccCCcccccc
Q psy11230        434 AQVDARTQLGKDPLYIAVEMHNLSIV----EQLLKFKANVNSSDQ--FGRTVLHLAVKIQNVAILECLLVNKADINAKII  507 (553)
Q Consensus       434 ~~~~~~~~~~~t~l~~A~~~~~~~~v----~~L~~~g~~~~~~~~--~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  507 (553)
                        ..  -.+-.+.+..|....++++.    ++++++..+-...+.  --..-|+.|+..|-...+.-.+.+|-+++.   
T Consensus        99 --L~--i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~---  171 (192)
T PF03158_consen   99 --LH--IYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI---  171 (192)
T ss_pred             --cC--CCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH---
Confidence              21  22235677888888888763    233333221111110  012456789999999999999999987654   


Q ss_pred             cccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230        508 SGIWKGYTPLHLAVESNNEAVINKLLD  534 (553)
Q Consensus       508 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~  534 (553)
                             ++|..|+.+++..|+.+++.
T Consensus       172 -------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 -------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -------HHHHHHHHhhHHHHHHHhhc
Confidence                   68999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.85  E-value=0.014  Score=40.02  Aligned_cols=47  Identities=17%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHc
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEY   67 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~   67 (553)
                      ..-+..|+.+||.|+++.+++.+ .++       ...+..|+...+ +++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34678999999999999999765 221       457999999999 999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.50  E-value=0.075  Score=36.41  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=10.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHc
Q psy11230        174 AFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       174 ~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      .+..|+.+|+.|+++.+++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~   28 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKK   28 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHH
Confidence            34455555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03077 Protein ECB2; Provisional

Probab=93.17  E-value=14  Score=39.70  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=49.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHH----HHHHHHcCCCCcCCCCCCCcHHHHHH
Q psy11230        175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA----VKLILEKGANVHAKDQLCKTALDIAV  250 (553)
Q Consensus       175 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~----v~~Ll~~~~~~~~~~~~~~~~l~~A~  250 (553)
                      +...+..|..+-...+.+.-...+       .......+...++.|..+-    ++.+.+.|..++...  ..+.|..++
T Consensus       330 i~~y~k~g~~~~A~~vf~~m~~~d-------~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--~~~ll~a~~  400 (857)
T PLN03077        330 IQMYLSLGSWGEAEKVFSRMETKD-------AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--IASVLSACA  400 (857)
T ss_pred             HHHHHhcCCHHHHHHHHhhCCCCC-------eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--HHHHHHHHh
Confidence            444455666666666655432211       1122233333346666543    333333555544332  123444455


Q ss_pred             HcCCHHHHHHH----HhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHh
Q psy11230        251 EHGHLKIVEFL----LDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRR  296 (553)
Q Consensus       251 ~~~~~e~v~~L----l~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  296 (553)
                      ..|..+....+    .+.|...... .....+..-+..|+.+-+..+++.
T Consensus       401 ~~g~~~~a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        401 CLGDLDVGVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             ccchHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCHHHHHHHHHh
Confidence            55655444333    3334322111 011233444566666666666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.89  E-value=9.4  Score=41.59  Aligned_cols=82  Identities=10%  Similarity=0.148  Sum_probs=36.4

Q ss_pred             hhHHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCcHHHHHHHcCCHHHH----HHHHhCCCCCCcccccCCHHHHHHH
Q psy11230        212 LLLHLVRNGHQNAVKLIL----EKGANVHAKDQLCKTALDIAVEHGHLKIV----EFLLDHGACVDSLQFIHSPLHLAIE  283 (553)
Q Consensus       212 ~l~~a~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~l~~A~~~~~~e~v----~~Ll~~~~~~~~~~~~~~~l~~a~~  283 (553)
                      .+...++.|.++....++    +.|..++...  ..+.+...++.|+.+-+    +.+.+.|..++... ....+...+.
T Consensus       478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT--ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT-YnsLI~a~~k  554 (1060)
T PLN03218        478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-FNALISACGQ  554 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence            344444666665443333    3444443321  12344555566665433    33333443322111 2233444556


Q ss_pred             hCCHHHHHHHHHh
Q psy11230        284 KQHIAIVQLLLRR  296 (553)
Q Consensus       284 ~~~~~~~~~l~~~  296 (553)
                      .|..+-+..+++.
T Consensus       555 ~G~~deA~~lf~e  567 (1060)
T PLN03218        555 SGAVDRAFDVLAE  567 (1060)
T ss_pred             CCCHHHHHHHHHH
Confidence            6666655555443

>PLN03077 Protein ECB2; Provisional

Probab=91.35  E-value=24  Score=38.08  Aligned_cols=21  Identities=14%  Similarity=0.362  Sum_probs=11.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhc
Q psy11230        115 TPLHIAARTGNYKMVRVLIDH  135 (553)
Q Consensus       115 t~L~~A~~~g~~~iv~~Ll~~  135 (553)
                      +.+...++.|+.+-+..+++.
T Consensus       227 ~Li~~y~k~g~~~~A~~lf~~  247 (857)
T PLN03077        227 ALITMYVKCGDVVSARLVFDR  247 (857)
T ss_pred             HHHHHHhcCCCHHHHHHHHhc
Confidence            344445556666655555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.76  E-value=15  Score=40.00  Aligned_cols=305  Identities=10%  Similarity=0.011  Sum_probs=134.6

Q ss_pred             HHHHHHcCCHHHHHH----HHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHH----HHHcCCCCcCCCCCCCcHH
Q psy11230        175 FQMAYEMKNFPAIEL----FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKL----ILEKGANVHAKDQLCKTAL  246 (553)
Q Consensus       175 l~~A~~~g~~~~~~~----Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~----Ll~~~~~~~~~~~~~~~~l  246 (553)
                      +...++.|..+-...    +.+.+..++.       ......+...++.|+.+....    +.+.|..++...  ..+.+
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~-------~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T--ynsLI  656 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTP-------EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF--FSALV  656 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Confidence            445566677554443    4444443321       122334444457787654444    444566555321  12445


Q ss_pred             HHHHHcCCHHH----HHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCC-CCCccccCCCCCchHHHH-Hhc
Q psy11230        247 DIAVEHGHLKI----VEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNN-NININTKGPTNKAPLHLV-VQR  320 (553)
Q Consensus       247 ~~A~~~~~~e~----v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~-~~~  320 (553)
                      ..++..|+.+-    ++.+.+.|..++... ....+...+..|..+-+..+++.... ...   .+....+.+..+ +..
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t-ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~---PdvvtyN~LI~gy~k~  732 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTVS-YSSLMGACSNAKNWKKALELYEDIKSIKLR---PTVSTMNALITALCEG  732 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHC
Confidence            56667777554    444444444332211 23445556677887776666654210 111   111112222222 233


Q ss_pred             cccC--hHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCccccCCCCCcHHHHHHHcCCchHH
Q psy11230        321 KSWN--TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL----VKHGADVNVIDNQGQMPLHIAVQNGYVAIP  394 (553)
Q Consensus       321 ~~~~--~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~L----l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  394 (553)
                      +...  .++++.+.+.|..++...  ..+.+...+..|..+.+..+    .+.|..++..   -++.+.-.|........
T Consensus       733 G~~eeAlelf~eM~~~Gi~Pd~~T--y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~---tynsLIglc~~~y~ka~  807 (1060)
T PLN03218        733 NQLPKALEVLSEMKRLGLCPNTIT--YSILLVASERKDDADVGLDLLSQAKEDGIKPNLV---MCRCITGLCLRRFEKAC  807 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHHHh
Confidence            3221  244455556666655322  12344455567776655444    4456655432   11222111111101100


Q ss_pred             HHHHcC--CC-CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh-cCCCCC
Q psy11230        395 NLIRHG--AN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKANVN  470 (553)
Q Consensus       395 ~ll~~~--~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~g~~~~  470 (553)
                      .+.+.-  .+ .+..+..+++..       .+.+++.+++.|..++....  .+.|......+..+..+.+++ .+....
T Consensus       808 ~l~~~v~~f~~g~~~~~n~w~~~-------Al~lf~eM~~~Gi~Pd~~T~--~~vL~cl~~~~~~~~~~~m~~~m~~~~~  878 (1060)
T PLN03218        808 ALGEPVVSFDSGRPQIENKWTSW-------ALMVYRETISAGTLPTMEVL--SQVLGCLQLPHDATLRNRLIENLGISAD  878 (1060)
T ss_pred             hhhhhhhhhhccccccccchHHH-------HHHHHHHHHHCCCCCCHHHH--HHHHHHhcccccHHHHHHHHHHhccCCC
Confidence            000000  00 011111111111       34566667777877654332  112211123444555665554 454444


Q ss_pred             CCCCCCCcHHHHHHHh---CCHHHHHHHHhccCCccccc
Q psy11230        471 SSDQFGRTVLHLAVKI---QNVAILECLLVNKADINAKI  506 (553)
Q Consensus       471 ~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~  506 (553)
                      ..+..-.+.|.-+...   .-..+++.....|.-++...
T Consensus       879 ~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~  917 (1060)
T PLN03218        879 SQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSF  917 (1060)
T ss_pred             CcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCccc
Confidence            4444445555544422   23567777788888777753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	553
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-35
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-31
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-29
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-26
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-24
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-23
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-23
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-23
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-19
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-23
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-23
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-19
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-23
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-23
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-22
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-22
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-15
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-22
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-17
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-22
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-22
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-22
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-17
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-21
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-18
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-17
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-20
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-20
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-16
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-19
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-19
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-18
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-17
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-15
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-16
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-15
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-16
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-16
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		8e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-15
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-15
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-15
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-14
1uoh_A	226	Human Gankyrin Length = 226		5e-15
1uoh_A	226	Human Gankyrin Length = 226		9e-12
1uoh_A	226	Human Gankyrin Length = 226		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-15
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		6e-15
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-15
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-15
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-09
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		9e-15
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-13
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-14
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-14
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-13
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-13
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		5e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-12
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-12
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		6e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-11
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-11
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-11
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-10
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-10
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-10
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-09
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-10
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		9e-07
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-08
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-08
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		5e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		6e-08
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		6e-08
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-08
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		5e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		7e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		8e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		8e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
2nyj_A	273	Crystal Structure Of The Ankyrin Repeat Domain Of T		2e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		6e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		9e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 211/464 (45%), Gaps = 73/464 (15%)
Query: 48  SCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV 106
           + LH+A+   ++ +V+ LL+     N  +    T LH  A  +       + L  N+A V
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQNKAKV 73
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
           N K K+  TPLH AAR G+  MV++L+++ A+       G+  LH+A     R+G    V
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA----REGHVETV 129
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
                K A Q     K F  + +  KY                          G     +
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKY--------------------------GKVRVAE 163
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQ 285
           L+LE+ A+ +A  +   T L +AV H +L IV+ LL  G    S  +  ++PLH+A ++ 
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 286 HIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
            + +                                       ++LL +G + N +  + 
Sbjct: 224 QVEVA--------------------------------------RSLLQYGGSANAESVQG 245
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
            TPLH+A +    + V+LL+   A+ N+ +  G  PLH+  Q G+V + + LI+HG  V+
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           A  +   TPLH+A    N+  + +LL+H A V+A+T+LG  PL+ A +  +  IV  LLK
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
             A+ N     G T L +A ++  +++ + L V   + +  ++S
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 186/411 (45%), Gaps = 47/411 (11%)
Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTA 174
           TPLH+A+  G+  +V            KN             LL++GA  NV N   +T 
Sbjct: 16  TPLHVASFMGHLPIV------------KN-------------LLQRGASPNVSNVKVETP 50
Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
             MA    +    +  L+    V      +      Q  LH   R GH N VKL+LE  A
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDD------QTPLHCAARIGHTNMVKLLLENNA 104
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLD---HGACVDSLQFIHSPLHLAIEKQHIAIV 290
           N +       T L IA   GH++ V  LL+     AC+    F  +PLH+A +   + + 
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF--TPLHVAAKYGKVRVA 162
Query: 291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
           +               G T   PLH+ V     N  + K LL  G + +       TPLH
Sbjct: 163 ELLLERDAHPNAAGKNGLT---PLHVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKY 409
           IA +    +    L+++G   N    QG  PLH+A Q G+   +  L+   AN N  NK 
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
             TPLH+  ++ ++   + L++HG  VDA T++G  PL++A    N+ +V+ LL+ +A+V
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
           N+  + G + LH A +  +  I+  LL N A  N ++ S    G TPL +A
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSS---DGTTPLAIA 384

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 18/381 (4%)
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEK 231
           T   +A  M + P ++  L+ G +        NVK   +  LH+  R GH    K +L+ 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVS----NVK--VETPLHMAARAGHTEVAKYLLQN 69
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIV 290
            A V+AK +  +T L  A   GH  +V+ LL++ A  + +    H+PLH+A  + H+  V
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129
Query: 291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
                          KG T   PLH  V  K     + + LL   A+ N       TPLH
Sbjct: 130 LALLEKEASQACMTKKGFT---PLH--VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKY 409
           +A+     D V LL+  G   +     G  PLHIA +   V +  +L+++G + NA +  
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
             TPLH+A ++ +   +  LL   A  +   + G  PL++  +  ++ + + L+K    V
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           +++ + G T LH+A    N+ +++ LL ++AD+NAK       GY+PLH A +  +  ++
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT----KLGYSPLHQAAQQGHTDIV 360
Query: 530 NKLLDYNPDLDVKDKNGNTAL 550
             LL      +    +G T L
Sbjct: 361 TLLLKNGASPNEVSSDGTTPL 381

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 36/339 (10%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXX 302
           T L +A   GHL IV+ LL  GA  + S   + +PLH+A    H  + +           
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN- 74
Query: 303 XXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
              K   ++ PLH     +  +T M K LL + AN N+      TPLHIA      + V 
Sbjct: 75  --AKAKDDQTPLHCAA--RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQK 421
            L++  A    +  +G  PLH+A + G V +  L+    A+ NA  K   TPLH+AV   
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
           N+  +  LL  G    +    G  PL+IA + + + +   LL++  + N+    G T LH
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 482 LAVKIQNVAILECLLVNKADINAKIISGIWK----------------------------- 512
           LA +  +  ++  LL  +A+ N    SG+                               
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           GYTPLH+A    N  ++  LL +  D++ K K G + LH
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           + L+ +GA+VN  DD+  TPLH+A      + V +L+KHGADVN  D  G  PLH+A  N
Sbjct: 31  RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
           G++ I   L+++GA+VNA++ Y  TPLH+A ++ ++  +  LL+HGA V+A+ + GK   
Sbjct: 91  GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
            I+++  N  + E L K 
Sbjct: 151 DISIDNGNEDLAEILQKL 168

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D+QG  PLH+A   G+  I   L++HGA+VNAR+    TPLH+A
Sbjct: 28  DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
            +  ++  +  LL++GA V+A+   G  PL++A +  +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    +   +  LL+HGA V+AR   G  PL++A +  +
Sbjct: 33  LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK+ A+VN+ D +G T LHLA    ++ I+E LL + AD+NA+       G T
Sbjct: 93  LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A  + +  IVE LLK  A+VN+ D  G T LHLA    +
Sbjct: 33  LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NA+   G+    TPLHLA +  +  ++  LL +  D++ +DK G T
Sbjct: 93  LEIVEVLLKYGADVNAQDAYGL----TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN +DN G  PLH+A  +G++ I   L++HGA+V+A + Y  TPLH+A
Sbjct: 28  DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A    G  PL++A +  +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  AMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAV 484
           T   +++
Sbjct: 148 TAFDISI 154

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           LI +GA+VNA +    TPLH+A    ++  +  LL+HGA VDA    G  PL++A    +
Sbjct: 33  LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK+ A+VN+ D  G T LHLA    ++ I+E LL   AD+NA+       G T
Sbjct: 93  LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+V+++D +G T LHLA    +
Sbjct: 33  LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NA  ++G     TPLHLA +  +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKYGADVNAFDMTG----STPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L+++GA+VNA + Y  TPLH+A
Sbjct: 28  DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
            +  ++  +  LL+HGA V+A+   G  PL++A    +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  ADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A   LG  PL++A +  +L IVE LLK+ A+VN+ D +G T LHLA    +
Sbjct: 33  LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL + AD+NAK     ++G+TPLHLA    +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKHGADVNAKD----YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D+ G+ PLH+A   G++ I   L++HGA+VNA +K   TPLH+A
Sbjct: 28  DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A    G  PL++A +  +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  ALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +   KTPLH+A  + ++  +  LL+HGA V+A  ++G  PL++A    +
Sbjct: 33  LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN++D +G T LHLA    ++ I+E LL   AD+NA+       G T
Sbjct: 93  LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    GK PL++A    +L IVE LLK  A+VN++D+ G T LHLA    +
Sbjct: 33  LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL N AD+NA    G    +TPLHLA ++ +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKNGADVNATDTYG----FTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L++ GA+VNA++K   TPLH+A
Sbjct: 16  DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + ++  +  LL+ GA V+A+ + G  PL++A    +L IVE LLK  A+VN+ D+FG+
Sbjct: 76  AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
           T   LA+   N  I E L
Sbjct: 136 TPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA++K   TPLH+A  + ++  +  LL+ GA V+A+ + G  PL++A    +
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D+ G T LHLA +  ++ I+E LL   AD+NA+       G T
Sbjct: 81  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----GKT 136
Query: 516 PLHLAVESNNEAV 528
           P  LA+++ NE +
Sbjct: 137 PFDLAIDNGNEDI 149

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
           V  L+   A+VN+ D+ G T LHLA +  ++ I+E LL   AD+NAK       GYTPLH
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLH 73
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           LA    +  ++  LL    D++ KDK+G T LH
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  DN G  PLH+A  NG++ I   L+++GA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL+HGA V+A    G  PL++A +  +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  AATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL++GA V+A    G  PL++A    +
Sbjct: 33  LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D  G T LHLA K  ++ I+E LL + AD+NA+       G T
Sbjct: 93  LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+VN+SD  G T LHLA    +
Sbjct: 33  LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL + AD+NA        G+TPLHLA +  +  ++  LL +  D++ +DK G T
Sbjct: 93  LEIVEVLLKHGADVNAYD----NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L++ GA+VNA++K   TPLH+A
Sbjct: 16  DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + ++  +  LL+ GA V+A+ + G  PL++A    +L IVE LLK  A+VN+ D+FG+
Sbjct: 76  AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
           T   LA++  +  I E L
Sbjct: 136 TPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA++K   TPLH+A  + ++  +  LL+ GA V+A+ + G  PL++A    +
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D+ G T LHLA +  ++ I+E LL   AD+NA+       G T
Sbjct: 81  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----GKT 136
Query: 516 PLHLAVESNNEAVINKL 532
           P  LA+   +E +   L
Sbjct: 137 PFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
           V  L+   A+VN+ D+ G T LHLA +  ++ I+E LL   AD+NAK       GYTPLH
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLH 73
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           LA    +  ++  LL    D++ KDK+G T LH
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L+++GA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
            ++ ++  +  LL++GA V+A   +G  PL++A +  +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  AKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA + Y  TPLH+A    ++  +  LL++GA V+A    G  PL++A +  +
Sbjct: 33  LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK+ A+VN+ D  G T LHLA    ++ I+E LL   AD+NA+       G T
Sbjct: 93  LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A  + +L IVE LLK  A+VN+ D  G T LHLA K  +
Sbjct: 33  LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NA    G     TPLHLA ++ +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKYGADVNADDTIG----STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GAD N  D+ G+ PLH+A   G++ I   L+R+GA+VNA +    TPLH+A
Sbjct: 16  DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A+   G  PLY+A    +L IVE LLK  A+VN+ D+FG+
Sbjct: 76  ASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++ I N  + E L
Sbjct: 136 TAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA  +A    G+ PL++A  + +L IVE LL+  A+VN+ D  G T LHLA  + +
Sbjct: 21  LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NAK  +GI    TPL+LA    +  ++  LL +  D++ +DK G T
Sbjct: 81  LEIVEVLLKYGADVNAKDATGI----TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Query: 549 ALHPS 553
           A   S
Sbjct: 137 AFDIS 141

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L++ GA+VNA++K   TPLH+A
Sbjct: 28  DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + ++  +  LL+ GA V+A+ + G  PL++A    +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA++K   TPLH+A  + ++  +  LL+ GA V+A+ + G  PL++A    +
Sbjct: 33  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D+ G T LHLA +  ++ I+E LL   AD+NA+       G T
Sbjct: 93  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A+ + G  PL++A    +L IVE LLK  A+VN+ D+ G T LHLA +  +
Sbjct: 33  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NAK       GYTPLHLA    +  ++  LL    D++ +DK G T
Sbjct: 93  LEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  DN G  PLH+A  +G++ I   L++HGA+V+A + +  TPLH+A
Sbjct: 28  DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A    G  PL++A +   L IVE LLK  A+VN+ D+FG+
Sbjct: 88  AYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL+HGA VDA    G  PL++A    +
Sbjct: 33  LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D  G T LHLA K   + I+E LL + AD+NA+       G T
Sbjct: 93  LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+V++SD FG T LHLA    +
Sbjct: 33  LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL N AD+NA    G+    TPLHLA +     ++  LL +  D++ +DK G T
Sbjct: 93  LEIVEVLLKNGADVNAMDSDGM----TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++ N    K LL +GA+VN  D + KTPLH+A E+   + V LL+  GAD N  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           + G+ PLH+A +NG+  +   L+  GA+ NA++   KTPLH+A E  +   +  LL  GA
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
             +     G+ PL +A E  N  +V+ L K
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           A +NG    + +L+ +GA+VNA +   KTPLH+A E  +   +  LL  GA  +A+   G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           K PL++A E  +  +V+ LL   A+ N+ D  G+T LHLA +  +  +++ LL   AD N
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
                    G TPL LA E  NE V+ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEVV-KLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           ++LGK  L  A E  N   V+ LL+  A+VN+SD  G+T LHLA +  +  +++ LL   
Sbjct: 2   SELGK-RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           AD NAK   G     TPLHLA E+ ++ V+  LL    D + KD +G T LH
Sbjct: 61  ADPNAKDSDG----KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A   G++ I   L++HGA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL+HGA V+A    G  PL++A  M +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL+HGA V+A   +G  PL++A  + +
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D +G T LHLA  + ++ I+E LL + AD+NA+       G T
Sbjct: 93  LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+VN+ D  G T LHLA  I +
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL + AD+NA      W G TPLHLA    +  ++  LL +  D++ +DK G T
Sbjct: 93  LEIVEVLLKHGADVNA---VDTW-GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A   G++ I   L++HGA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL+HGA V+A    G  PL++A  M +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL+HGA V+A    G  PL++A  + +
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D +G T LHLA  + ++ I+E LL + AD+NA+       G T
Sbjct: 93  LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+VN+ D  G T LHLA  I +
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL + AD+NA      W G TPLHLA    +  ++  LL +  D++ +DK G T
Sbjct: 93  LEIVEVLLKHGADVNA---VDTW-GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+ V NG++ I   L+++ A+VNA +K   TPLH+A
Sbjct: 28  DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + ++  +  LL++GA V+A    G  PL++A E  +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++ V   +L I+E LLK+ A+VN+SD+ G T LHLA    +
Sbjct: 33  LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL   AD+NA      ++GYTPLHLA E  +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKYGADVNAMD----YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++ N    K L+ +GA+VN  D + +TPLH A E+   + V LL+  GADVN  D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           + G+ PLH A +NG+  +   LI  GA+VNA++   +TPLH A E  +   +  L+  GA
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
            V+     G+ PL +A E  N  +V+ L K
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYA 410
           A E+   D V  L+++GADVN  D+ G+ PLH A +NG+  +  L I  GA+VNA++   
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           +TPLH A E  +   +  L+  GA V+A+   G+ PL+ A E  +  +V+ L+   A+VN
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 471 SSDQFGRTVLHLAVKIQNVAILECL 495
           +SD  GRT L LA +  N  +++ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           A +NG    + +LI +GA+VNA +   +TPLH A E  +   +  L+  GA V+A+   G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           + PL+ A E  +  +V+ L+   A+VN+ D  GRT LH A +  +  +++ L+   AD+N
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
                    G TPL LA E  NE V+ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEVV-KLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           ++LGK  L  A E  N   V+ L++  A+VN+SD  GRT LH A +  +  +++ L+   
Sbjct: 2   SELGK-RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           AD+NAK   G     TPLH A E+ ++ V+  L+    D++ KD +G T LH
Sbjct: 61  ADVNAKDSDG----RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++ N    K L+ +GA+VN  D + +TPLH A +    + V LL+  GADVN  D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           + G+ PLH A + G+  I   LI  GA+VNA++   +TPLH A ++ +   +  L+  GA
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
            V+     G+ PL +A E  N  IV+ L K
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           A +NG    + +LI +GA+VNA +   +TPLH A ++ +   +  L+  GA V+A+   G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           + PL+ A +  +  IV+ L+   A+VN+ D  GRT LH A K  +  I++ L+   AD+N
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
                    G TPL LA E  NE ++ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEIV-KLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           ++LGK  L  A E  N   V+ L++  A+VN+SD  GRT LH A K  +  I++ L+   
Sbjct: 2   SELGK-RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           AD+NAK   G     TPLH A +  ++ ++  L+    D++ KD +G T LH
Sbjct: 61  ADVNAKDSDG----RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH 108

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D+ G  PLH+A   G++ I   L+++GA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
            ++ ++  +  LL++GA V+A    G  PL++A  + +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL++GA V+A   LG  PL++A +  +
Sbjct: 33  LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L +VE LLK  A+VN++D  G T LHLA  I ++ I+E LL + AD+NA+       G T
Sbjct: 93  LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A   +G  PL++A    +L IVE LLK  A+VN+ D  G T LHLA    +
Sbjct: 33  LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + ++E LL N AD+NA        G+TPLHLA    +  ++  LL +  D++ +DK G T
Sbjct: 93  LEVVEVLLKNGADVNAND----HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A   G++ I   L+++GA+VNA++    TPLH+A
Sbjct: 28  DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + ++  +  LL++GA V+A    G  PL++A +  +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNAR+    TPLH+A    ++  +  LL++GA V+A+  LG  PL++A    +
Sbjct: 33  LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+SD  G T LHLA K  ++ I+E LL N AD+NA+       G T
Sbjct: 93  LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+AR   G  PL++A    +L IVE LLK  A+VN+ D  G T LHLA +  +
Sbjct: 33  LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL N AD+NA        G+TPLHLA +  +  ++  LL    D++ +DK G T
Sbjct: 93  LEIVEVLLKNGADVNASDS----HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A   G++ I   L+++GA+VNA +    TPLH+A
Sbjct: 28  DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A+   G  PL++A    +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88  AHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A   +G  PL++A    +L IVE LLK  A+VN+ D  G T LHLA    +
Sbjct: 33  LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL N AD+NAK  +GI    TPLHLA    +  ++  LL Y  D++ +DK G T
Sbjct: 93  LEIVEVLLKNGADVNAKDDNGI----TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
           + PLHL    ++ +  + K LL  GA+VN KD   +TPLH+A  +   + V LL++ GAD
Sbjct: 3   RTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
           VN  D  G+ PLH+A +NG++ +   L+  GA+VNA++K  +TPLH+A    ++  +  L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 430 LEHGA 434
           LE GA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVN 404
           +TPLH+A  +   + V LL++ GADVN  D  G+ PLH+A +NG++ +  L+   GA+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           A++K  +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 465 FKA 467
             A
Sbjct: 123 AGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 378 GQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
           G+ PLH+A +NG++ +  L+   GA+VNA++K  +TPLH+A    ++  +  LLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
           +A+ + G+ PL++A    +L +V+ LL+  A+VN+ D+ GRT LHLA +  ++ +++ LL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
            +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+  A+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           N+ D+ GRT LHLA +  ++ +++ LL   AD+NAK  +    G TPLHLA  + +  V+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVV 117
Query: 530 NKLLD 534
             LL+
Sbjct: 118 KLLLE 122

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           + L+ +GA+VN  DD   TPLH+A  +   + V +L+K+GADVN  D+ G  PLH+A  +
Sbjct: 23  RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
           G++ I   L++HGA+VNA ++   TPLH+A     +  +  LL+HGA V+A+  LG    
Sbjct: 83  GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Query: 448 YIAVEMHNLSIVEQL 462
            I++      + E L
Sbjct: 143 DISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 69/115 (60%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A     +  +  LL++GA V+A    G  PL++A    +
Sbjct: 25  LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
           L IVE LLK  A+VN+ D+ G T LHLA     + I+E LL + AD+NA+   G+
Sbjct: 85  LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGL 139

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A     L IVE LLK  A+VN+SD  G T LHLA    +
Sbjct: 25  LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL + AD+NA   +G    +TPLHLA  S    ++  LL +  D++ +D  G T
Sbjct: 85  LEIVEVLLKHGADVNAYDRAG----WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLT 140
Query: 549 ALHPS 553
           A   S
Sbjct: 141 AFDIS 145

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++ N    K LL +GA+ N  D + +TPLH A E+   + V LL+  GAD N  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           + G+ PLH A +NG+  I   L+  GA+ NA++   +TPLH A E  +   +  LL  GA
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
             +     G+ PL +A E  N  IV+ L K
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           A +NG    + +L+ +GA+ NA +   +TPLH A E  +   +  LL  GA  +A+   G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           + PL+ A E  +  IV+ LL   A+ N+ D  GRT LH A +  +  I++ LL   AD N
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
                    G TPL LA E  NE ++ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEIV-KLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           ++LGK  L  A E  N   V+ LL+  A+ N+SD  GRT LH A +  +  I++ LL   
Sbjct: 2   SELGKR-LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           AD NAK   G     TPLH A E+ ++ ++  LL    D + KD +G T LH
Sbjct: 61  ADPNAKDSDG----RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 108

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A  NG++ I   L+++GA+VNA +    TPL +A
Sbjct: 28  DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
               ++  +  LL++GA V+A    G  PL++A    +L IVE LLK  A+VN+ D+FG+
Sbjct: 88  ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A    ++  +  LL++GA V+A    G  PL +A    +
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN++D  G T LHLA    ++ I+E LL N AD+NA+       G T
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
              +++++ NE
Sbjct: 149 AFDISIDNGNE 159

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A    +L IVE LLK  A+VN+ D  G T L LA    +
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + I+E LL N AD+NA  +    +G+TPLHLA    +  ++  LL    D++ +DK G T
Sbjct: 93  LEIVEVLLKNGADVNANDM----EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
Query: 549 ALHPS 553
           A   S
Sbjct: 149 AFDIS 153

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 8/217 (3%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV-AIPN 395
           N  ++    ++PLH A E+   D   +LV+ GA+++      + PL  A +N ++ A+  
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ--LGKDPLYIAVEM 453
           LI+ GA V+ ++    T LH+A ++ +   + YLL +G Q+D   Q   G  P+  A E 
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEY 121
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
            ++ +V+ LL   +++N  D      LH A     V I E LL  K D++A  I     G
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI----HG 177
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            +PLH+A   N    +   L  + D+ +K+K G T L
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
           N    ++  ++PLH A E  ++   + L++ GA +D  ++  + PL  A E ++L  V+ 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN-KADINAKIISGIWKGYTPLHLA 520
           L+K  A V+  D  G T LHLA K  +  +++ LL N + D+N +       G+TP+  A
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----GWTPMIWA 118
Query: 521 VESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            E  +  ++  LL    D++++D   N  LH
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLH 149

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN +D+ G  PLH+A + G++ I   L++HGA+VNAR+ + +TPLH+A
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
               ++  +  LLE+GA V+A+ + GK    I+++  N  + E L K 
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 66/100 (66%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A ++ ++  +  LL+HGA V+AR   G+ PL++A  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LL++ A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A +  +L IVE LLK  A+VN+ D +GRT LHLA  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL   AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN +D+ G  PLH+A + G++ I   L++HGA+VNA + + +TPLH+A
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
               ++  +  LLE+GA V+A+ + GK    I+++  N  + E L K 
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 65/100 (65%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A ++ ++  +  LL+HGA V+A    G+ PL++A  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LL++ A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A +  +L IVE LLK  A+VN+SD +GRT LHLA  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL   AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++      + L+ +GA+VN  D +  TPLH+A +    + V +L+KHGADVN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
           N G  PLH+A   G++ I   L++HGA+VNA++K+ KT   I+++  N
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA ++   TPLH+A +  ++  +  LL+HGA V+A    G  PL++A    +
Sbjct: 33  LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LLK  A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A  + G  PL++A +  +L IVE LLK  A+VN+ D  G T LHLA    +
Sbjct: 33  LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL + AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN +D+ G  PLH+A + G++ I   L++HGA+VNA + + +TPLH+A
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
               ++  +  LLE+GA V+A+ + GK    I+++  N  + E L K 
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 65/100 (65%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +    TPLH+A ++ ++  +  LL+HGA V+A    G+ PL++A  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LL++ A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A    G  PL++A +  +L IVE LLK  A+VN+SD +GRT LHLA  + +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL   AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 121/262 (46%), Gaps = 40/262 (15%)
Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASI-KTRDPTAVEILKTNRANVNIKNKEGDTPL 117
           +L+ LL   NV+ +A D   +T LH  A   + R    V++L  + A+V+ K+K G  PL
Sbjct: 39  KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR---IVQLLLQHGADVHAKDKGGLVPL 95
Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENN 169
           H A   G+Y++  +L+ HGA     +   +  LH A          +LL  GAD  + N 
Sbjct: 96  HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Query: 170 FGKTAFQMA----------YEMKNFPAIE-------------LFLKYGVNVEQCVCHENV 206
            GK+A  MA          YE K    ++             L L+  +N +Q   HE  
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETA 214
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
            H     LH  R   +   +L+L KGANV+ K++   T L +A E  H  ++E L  HGA
Sbjct: 215 LHCAVASLHPKR---KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 267 CVDSLQFI-HSPLHLAIEKQHI 287
            +++L  +  + LH A    H+
Sbjct: 272 KMNALDSLGQTALHRAALAGHL 293

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 109/242 (45%), Gaps = 33/242 (13%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
           N +  D    TPLH+A        V LL++HGADV+  D  G +PLH A   G+  +   
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-----------VDA------ 438
           L++HGA VNA + +  TPLH A  +  +   + LL HGA            VD       
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169
Query: 439 RTQLGKD----PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV-----KIQNV 489
           R +L  +     L  A    +L+ V++ L  +       Q   T LH AV     K + V
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
           A  E LL   A++N K    +    TPLH+A E  +  V+  L  +   ++  D  G TA
Sbjct: 230 A--ELLLRKGANVNEKNKDFM----TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 550 LH 551
           LH
Sbjct: 284 LH 285

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN +D  G  PLH+A Q G++ I   L+++GA+VNA + +  TPLH+A
Sbjct: 28  DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
             + ++  +  LL+HGA V+A+ + GK    I+++  N  + E L K 
Sbjct: 88  AIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA ++   TPLH+A +  ++  +  LL++GA V+A    G  PL++A    +
Sbjct: 33  LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LLK  A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A  + G  PL++A ++ +L IVE LLK+ A+VN+ D FG T LHLA    +
Sbjct: 33  LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL + AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
           D +++T LH A  +   + V  L++ G  VN  D+ G  PLHIA   G   I   L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A+VNA N+   TPLH A  +        LLE GA  DA+       ++ A    NL +V 
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
            LL +KA+ N  D  G T LHLA   + V   + L+   A I
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
           D   +  LH A   G+  I   L++ G  VN ++    +PLHIA        +  LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           A V+A  Q G  PL+ A   +   I   LL+  AN ++ D +  T +H A    N+ ++ 
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            LL  KA  N +      +G TPLHLA +         L+     + +++K   T L 
Sbjct: 157 ILLFYKASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E++L  K+    +DQ  RT LH A    +  I+E LL     +N K  +G    ++PLH+
Sbjct: 24  ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A  +  + ++  LL     ++  ++NG T LH
Sbjct: 80  AASAGRDEIVKALLVKGAHVNAVNQNGCTPLH 111

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
           D +++T LH A  +   + V  L++ G  VN  D+ G  PLHIA   G   I   L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A+VNA N+   TPLH A  +        LLE GA  DA+       ++ A    NL +V 
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
            LL +KA+ N  D  G T LHLA   + V   + L+   A I
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
           D   +  LH A   G+  I   L++ G  VN ++    +PLHIA        +  LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           A V+A  Q G  PL+ A   +   I   LL+  AN ++ D +  T +H A    N+ ++ 
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            LL  KA  N +      +G TPLHLA +         L+     + +++K   T L 
Sbjct: 157 ILLFYKASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E++L  K+    +DQ  RT LH A    +  I+E LL     +N K  +G    ++PLH+
Sbjct: 24  ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A  +  + ++  LL     ++  ++NG T LH
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLH 111

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 356 QCWDAVSLLVK---HGADVNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAK 411
           +C  A   L K    G  VNV    G  PLH+A  +G    IP L++HGAN  ARN    
Sbjct: 61  KCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA 120
Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
            PLH+A +Q +   +  LL+  A+ + +   G  PL  A    +  +V  LL+  A++N+
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           S+  G T LH AV  ++V ++E LL++ A + 
Sbjct: 181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Query: 379 QMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
           Q P     Q     +P     G  VN  ++   +PLH+A        +  LL+HGA   A
Sbjct: 58  QCPKCAPAQKRLAKVPA---SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA 114
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           R      PL++A +  +  +V+ LL   A  N  D  G T L  A    +  ++  LL +
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            A INA       KG T LH AV   +  V+  LL +   + V +K   TA+
Sbjct: 175 GASINA----SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYH--GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
           PLH+ V + +         L+   G  +++ ++  +TPLH+A+ +     V LLV  GA 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 371 VNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGA----NVNARNKYAKTPLHIAVEQKNMSA 425
              +D  GQ   H+A +      +  L+   A    ++ ARN    T LH+AV  +    
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 426 LNYLLEHGAQVDA-RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
           +  LLE GA +DA   + G+ PL  AVE ++LS+V+ LL+  ANVN+    G + LH A 
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 485 KIQNVAILECLLVNKADINAK 505
               + ++  L+ + AD + K
Sbjct: 192 GRGLLPLVRTLVRSGADSSLK 212

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLV----KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI 397
           D++  TPLHIA+      AV  LV    + G ++++ +N  Q PLH+AV      +P+++
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV---ITTLPSVV 62
Query: 398 R----HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA----QVDARTQLGKDPLYI 449
           R     GA+  A +++ +T  H+A E ++ + L  LL+  A     ++AR   G   L++
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 450 AVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
           AV       V+ LL+  A++++ D + GR+ L  AV+  ++++++ LL + A++NA+   
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ--- 179
Query: 509 GIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            ++ G + LH A       ++  L+    D  +K+ + +T L
Sbjct: 180 -MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
           D +++T LH A  +   + V  L++ G  VN  D+ G  PLHIA   G   I   L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A VNA N+   TPLH A  +        LLE GA  DA+       ++ A    NL ++ 
Sbjct: 97  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
            LL +KA+ N  D  G T LHLA   + V   + L+   A I
Sbjct: 157 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
           D   +  LH A   G+  I   L++ G  VN ++    +PLHIA        +  LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           AQV+A  Q G  PL+ A   +   I   LL+  AN ++ D +  T +H A    N+ ++ 
Sbjct: 97  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            LL  KA  N +      +G TPLHLA +         L+     + +++K   T L 
Sbjct: 157 ILLYYKASTNIQDT----EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 210

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E +L  K+    +DQ  RT LH A    +  I+E LL     +N K  +G    ++PLH+
Sbjct: 24  ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A  +  + ++  LL     ++  ++NG T LH
Sbjct: 80  AASAGRDEIVKALLGKGAQVNAVNQNGCTPLH 111

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
           D +++T LH A  +   + V  L++ G  VN  D+ G  PLHIA   G   I   L+  G
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A VNA N+   TPLH A  +        LLE GA  DA+       ++ A    NL ++ 
Sbjct: 98  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
            LL +KA+ N  D  G T LHLA   + V   + L+   A I
Sbjct: 158 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
           D   +  LH A   G+  I   L++ G  VN ++    +PLHIA        +  LL  G
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           AQV+A  Q G  PL+ A   +   I   LL+  AN ++ D +  T +H A    N+ ++ 
Sbjct: 98  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            LL  KA  N +      +G TPLHLA +         L+     + +++K   T L 
Sbjct: 158 ILLYYKASTNIQDT----EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 211

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E +L  K+    +DQ  RT LH A    +  I+E LL     +N K  +G    ++PLH+
Sbjct: 25  ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 80
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A  +  + ++  LL     ++  ++NG T LH
Sbjct: 81  AASAGRDEIVKALLGKGAQVNAVNQNGCTPLH 112

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 127/314 (40%), Gaps = 63/314 (20%)
Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGD-TPLHIAARTGNYKMVRVLIDHGAHTECKN 143
           + +++  D   V+ L    ANVN + +EG  TPLH A +     +V +L+ HGA    + 
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69
Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
             G     +A        + + L KGAD+N  + +G TAF  A       A++   K G 
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 196 NV----EQCVCHENVKHGGQL-LLHLVRNGHQNAVKLIL-EKGANVHAKDQLCKTAL--- 246
           NV    +     E ++ GG   L+     GH   +K++L E GA+V+A D + + AL   
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
Query: 247 -----DIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXX 301
                D  VE     I   LLDHGA V+                                
Sbjct: 190 LLSSDDSDVE----AITHLLLDHGADVN-------------------------------- 213
Query: 302 XXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
               +G   K PL L V++K       + L      +N  D + KT L +A+E +     
Sbjct: 214 ---VRGERGKTPLILAVEKKHLGLVQ-RLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 362 SLLVKHGADVNVID 375
            LL K GA  +  D
Sbjct: 270 ELLCKRGASTDCGD 283

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 47/250 (18%)
Query: 315 HLVVQR-KSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADVN 372
           HL+++  ++ +  + + LL  GANVN +++E   TPLH A++    D V LL++HGAD  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 373 VIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           +    G  P  +A   G V +  L +  GA+VN  + Y  T    A     + AL +L +
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 432 HGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVL 480
            GA V+ R +  +D           L  A E  ++ +++ LL +  A+VN+ D  GR   
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN-- 184
Query: 481 HLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540
                    A++  LL +                       +S+ EA+ + LLD+  D++
Sbjct: 185 ---------ALIHALLSSD----------------------DSDVEAITHLLLDHGADVN 213
Query: 541 VKDKNGNTAL 550
           V+ + G T L
Sbjct: 214 VRGERGKTPL 223

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
           L+   ++      + L+ +GA+VN +D    TPLH+A  +   + V +L+K+GADVN ID
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
             G+ PLH+    G++ I   L++HGA+VNA++K+ KT   I+++  N
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA +K   TPLH+A    ++  +  LL++GA V+A   +G+ PL++     +
Sbjct: 33  LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LLK  A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A  ++G  PL++A    +L IVE LLK  A+VN+ D  G T LHL     +
Sbjct: 33  LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL + AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GA     D  G  PLH+A Q G+ +    L+R G + +AR K  +TPLH+A
Sbjct: 16  DEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA 74
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             + + + +  LL+HGA V+A+  L    L+ A E ++  +VE L+K+ A+V++  +F +
Sbjct: 75  ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK 134
Query: 478 TVLHLAVKIQNVAILECL 495
           T   +++   N  + E L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           +PLH+A +  + S    LL  G   DART++ + PL++A    + +IVE LLK  A+VN+
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            D    T LH A +  +  ++E L+   AD++ +
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
           LG  PL++A +  + S  E LL+   + ++  +  RT LH+A    +  I+E LL + AD
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
           +NAK +  +    T LH A E N++ V+  L+ Y  D+  + K   TA   S
Sbjct: 93  VNAKDMLKM----TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 127/314 (40%), Gaps = 63/314 (20%)
Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGD-TPLHIAARTGNYKMVRVLIDHGAHTECKN 143
           + +++  D   V+ L    ANVN + +EG  TPLH A +     +V +L+ HGA    + 
Sbjct: 30  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 89
Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
             G     +A        + + L KGAD+N  + +G TAF  A       A++   K G 
Sbjct: 90  KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Query: 196 NV----EQCVCHENVKHGGQL-LLHLVRNGHQNAVKLIL-EKGANVHAKDQLCKTAL--- 246
           NV    +     E ++ GG   L+     GH   +K++L E GA+V+A D + + AL   
Sbjct: 150 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209
Query: 247 -----DIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXX 301
                D  VE     I   LLDHGA V+                                
Sbjct: 210 LLSSDDSDVE----AITHLLLDHGADVN-------------------------------- 233
Query: 302 XXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
               +G   K PL L V++K       + L      +N  D + KT L +A+E +     
Sbjct: 234 ---VRGERGKTPLILAVEKKHLGLVQ-RLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 362 SLLVKHGADVNVID 375
            LL K GA  +  D
Sbjct: 290 ELLCKRGASTDCGD 303

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 54/266 (20%)
Query: 306 KGPTNKAPL-------HLVVQR-KSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQ 356
           +GPT+ +         HL+++  ++ +  + + LL  GANVN +++E   TPLH A++  
Sbjct: 11  EGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS 70
Query: 357 CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLH 415
             D V LL++HGAD  +    G  P  +A   G V +  L +  GA+VN  + Y  T   
Sbjct: 71  REDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 130
Query: 416 IAVEQKNMSALNYLLEHGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-K 464
            A     + AL +L + GA V+ R +  +D           L  A E  ++ +++ LL +
Sbjct: 131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
             A+VN+ D  GR            A++  LL +                       +S+
Sbjct: 191 MGADVNACDNMGRN-----------ALIHALLSSD----------------------DSD 217
Query: 525 NEAVINKLLDYNPDLDVKDKNGNTAL 550
            EA+ + LLD+  D++V+ + G T L
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPL 243

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 15/232 (6%)
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
           S +T     LL  GA++N  + +  T LH A      D V  LV++GA++N  DN+G +P
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 382 LHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL-NYLLEHGAQVD-A 438
           LH A   GY+ I   LI  GA+V A N    TPL IA E+     L N +   G  ++ A
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           R +  +  L  A +  N   +  +   K+        G T LH+A       +L+ L+  
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKS--------GGTALHVAAAKGYTEVLKLLIQA 221
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
           + D+N K     + G+TPLH A     E     L++   D++  +K G TA 
Sbjct: 222 RYDVNIK----DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVN 404
           +TPLH+A  +   + V LL++ GADVN  D  G+ PLH+A +NG++ +  L+   GA+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           A++K  +TPLH+A    ++  +  LLE GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 378 GQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
           G+ PLH+A +NG++ +  L+   GA+VNA++K  +TPLH+A    ++  +  LLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467
           +A+ + G+ PL++A    +L +V+ LL+  A
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
            +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+  A+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLL 496
           N+ D+ GRT LHLA +  ++ +++ LL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G+ PL++A    +L +V+ LL+  A+VN+ D+ GRT LHLA +  ++ +++ LL   AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
           NAK  +    G TPLHLA  + +  V+  LL+
Sbjct: 62  NAKDKN----GRTPLHLAARNGHLEVVKLLLE 89

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           + L+ +GA+VN KD+   TPL++A      + V +L+K+GADVN +D  G  PLH+A   
Sbjct: 31  RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
           G++ I   L++HGA+VNA++K+ KT   I++   N
Sbjct: 91  GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 64/100 (64%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+VNA+++Y  TPL++A    ++  +  LL++GA V+A   +G  PL++A  + +
Sbjct: 33  LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L I E LLK  A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A+ + G  PLY+A    +L IVE LLK  A+VN+ D  G T LHLA  I +
Sbjct: 33  LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I E LL + AD+NA+       G T   +++ + NE
Sbjct: 93  LEIAEVLLKHGADVNAQ----DKFGKTAFDISIGNGNE 126

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 7/193 (3%)
Query: 354 ESQCWDAVSLLVKHGADVN-VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
           E      +S L+  GA++N  +D  G+  LH+A +         L+  GA+ N+++   +
Sbjct: 26  EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 412 TPLHIAVEQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           TPLH AV    M     LL + A  ++AR   G  PL +A  +    +VE L+   A++N
Sbjct: 86  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
           ++D  G+T LH A  + N   +  LL++ A+ +A+      K  TPL LA    +     
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD----KDETPLFLAAREGSYEASK 201
Query: 531 KLLDYNPDLDVKD 543
            LLD   + ++ D
Sbjct: 202 ALLDNFANREITD 214

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 419 EQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
           E      ++ LL  GA+++A   + G+  L++A         ++LL   A+ NS D  GR
Sbjct: 26  EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 478 TVLHLAVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
           T LH AV    + + + LL N+A ++NA++      G TPL LA     E ++  L+  +
Sbjct: 86  TPLHAAVAADAMGVFQILLRNRATNLNARM----HDGTTPLILAARLAIEGMVEDLITAD 141
Query: 537 PDLDVKDKNGNTALH 551
            D++  D +G TALH
Sbjct: 142 ADINAADNSGKTALH 156

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
           L+  G  VN+I      PLH A   G+++ +  L++HGA VN       TPL  A    +
Sbjct: 78  LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
              +N LL+HGA V   + L   P++ A    ++  V  L+ +  N++       T L+L
Sbjct: 138 WDCVNLLLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLAVESNNEAVINKLLDYNPDLDV 541
           A + Q  A ++ LL + AD+N        KG  +PLH  V + +E +   L+D+  D   
Sbjct: 197 ACENQQRACVKKLLESGADVNQG------KGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Query: 542 KDKNG 546
           K+  G
Sbjct: 251 KNAEG 255

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
           L+  G  VN+I      PLH A   G+++ +  L++HGA VN       TPL  A    +
Sbjct: 22  LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
              +N LL+HGA V   + L   P++ A    ++  V  L+ +  N++       T L+L
Sbjct: 82  WDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLAVESNNEAVINKLLDYNPDLDV 541
           A + Q  A ++ LL + AD+N        KG  +PLH    + +E +   L+D+  D   
Sbjct: 141 ACENQQRACVKKLLESGADVNQG------KGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 542 KDKNG 546
           K+  G
Sbjct: 195 KNAEG 199

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L  +GADVN  D  G  PLH+A   G++ I   L+++GA+VNA     +TPLH+A
Sbjct: 28  DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
               ++  +  LL+HGA V+A+ + GK    I+++  N  + E L K 
Sbjct: 88  AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 61/100 (61%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L  +GA+VNA + +  TPLH+A    ++  +  LL++GA V+A    G+ PL++A    +
Sbjct: 33  LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           L IVE LLK  A+VN+ D+FG+T   +++   N  + E L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L  +GA V+A    G  PL++A  + +L IVE LLK  A+VN++   GRT LHLA    +
Sbjct: 33  LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           + I+E LL + AD+NA+       G T   +++++ NE
Sbjct: 93  LEIVEVLLKHGADVNAQDKF----GKTAFDISIDNGNE 126

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           A+VN++D +G T LHLA  + ++ I+E LL N AD+NA   +G     TPLHLA  +++ 
Sbjct: 38  ADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG----RTPLHLAAWADHL 93
Query: 527 AVINKLLDYNPDLDVKDKNGNTALHPS 553
            ++  LL +  D++ +DK G TA   S
Sbjct: 94  EIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
           +T +   LL  GA+ NV+D    +P+H A  +   D + +LV+HGADVNV D  G +P+H
Sbjct: 53  STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 384 IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +AVQ G+ A+ + +   ++++ R+    TPL +A+++     ++ L  H
Sbjct: 113 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           + ++  G+  L + +         L++ GA+ N ++    +P+H A     +  L  L+E
Sbjct: 36  DALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
           HGA V+     G  P+++AV+  + ++V   L  +++++  D  G T L LA++
Sbjct: 96  HGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQ 148

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L R   + +A N++ KT L + +      AL  LL+ GA  + +   G  P++ A     
Sbjct: 28  LHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGF 86
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L  ++ L++  A+VN  D  G   +HLAV+  + A++   L  ++D++ +      +G T
Sbjct: 87  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDA----RGLT 141
Query: 516 PLHLAVESNNEAVINKL 532
           PL LA++   + +++ L
Sbjct: 142 PLELALQRGAQDLVDIL 158

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
           +T +   LL  GA+ NV+D    +P+H A  +   D + +LV+HGADVNV D  G +P+H
Sbjct: 47  STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 384 IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +AVQ G+ A+ + +   ++++ R+    TPL +A+++     ++ L  H
Sbjct: 107 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L R   + +A N++ KT L + +      AL  LL+ GA  + +   G  P++ A     
Sbjct: 22  LHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L  ++ L++  A+VN  D  G   +HLAV+  + A++   L  ++D++ +      +G T
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDA----RGLT 135
Query: 516 PLHLAVESNNEAVINKL 532
           PL LA++   + +++ L
Sbjct: 136 PLELALQRGAQDLVDIL 152

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 63/102 (61%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           LL  GA+ NV+D    +P+H A  +   D + +LV+HGADVN +D+ G +P+H+A++ G+
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
            ++ + +   ++++ R+    TPL +A ++   + ++ L  H
Sbjct: 122 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           + ++  G+  L + +         L++ GA+ N ++    +P+H A     +  L  L+E
Sbjct: 38  DALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
           HGA V+A    G  P+++A+   + S+V   L  +++++  D  G T L LA
Sbjct: 98  HGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHRDASGLTPLELA 148

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L R   + +A N++ KT L + +      AL  LL+ GA  + +   G  P++ A     
Sbjct: 30  LHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGF 88
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L  ++ L++  A+VN+ D  G   +HLA++  + +++   L  ++D++ +  SG+    T
Sbjct: 89  LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL----T 143
Query: 516 PLHLAVESNNEAVINKL 532
           PL LA +   + +++ L
Sbjct: 144 PLELARQRGAQNLMDIL 160

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 63/102 (61%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           LL  GA+ NV+D    +P+H A  +   D + +LV+HGADVN +D+ G +P+H+A++ G+
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
            ++ + +   ++++ R+    TPL +A ++   + ++ L  H
Sbjct: 120 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           + ++  G+  L + +         L++ GA+ N ++    +P+H A     +  L  L+E
Sbjct: 36  DALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
           HGA V+A    G  P+++A+   + S+V   L  +++++  D  G T L LA
Sbjct: 96  HGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHRDASGLTPLELA 146

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L R   + +A N++ KT L + +      AL  LL+ GA  + +   G  P++ A     
Sbjct: 28  LHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGF 86
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L  ++ L++  A+VN+ D  G   +HLA++  + +++   L  ++D++ +  SG+    T
Sbjct: 87  LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL----T 141
Query: 516 PLHLAVESNNEAVINKL 532
           PL LA +   + +++ L
Sbjct: 142 PLELARQRGAQNLMDIL 158

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 39/238 (16%)
Query: 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHI 287
           ++E G +V   D+   T L  A  +  + +V++ +  GA VD L                
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL---------------- 71
Query: 288 AIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKT 347
                              G  N  PLH   ++   + +M   L+ +GA+ ++ D E  +
Sbjct: 72  ------------------GGDLNSTPLHWATRQG--HLSMVVQLMKYGADPSLIDGEGCS 111
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN--LIRHGANVNA 405
            +H+A +      V+ L+  G DV+++D  G  PL  A    +   P   L+    +VN 
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 406 RNKYAK-TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
            +KY K T LH AV   N + ++ LLE GA VDA+   G+  L +A +  N+ ++  L
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 39/209 (18%)
Query: 327 MFKTLLYHGANVN-VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
           + K  +  GA V+ +  D N TPLH A        V  L+K+GAD ++ID +G   +H+A
Sbjct: 57  LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 386 VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
            Q G+ +I                                + YL+  G  VD   Q G  
Sbjct: 117 AQFGHTSI--------------------------------VAYLIAKGQDVDMMDQNGMT 144
Query: 446 PL-YIAVEMHNLSIVEQLLKFKANVNSSDQFGR-TVLHLAVKIQNVAILECLLVNKADIN 503
           PL + A   H++     LL F  +VN  D++ + T LH AV   N  ++  LL   A+++
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKL 532
           A+ I    KG + L LA +  N  +IN L
Sbjct: 205 AQNI----KGESALDLAKQRKNVWMINHL 229

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 39/213 (18%)
Query: 374 IDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           ID+     +  A Q G Y     L+  G +V   +K   T LH A     +  + Y +  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 433 GAQVDARTQLGKD----PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           GA VD   QLG D    PL+ A    +LS+V QL+K+ A+ +  D  G + +HLA +  +
Sbjct: 65  GAIVD---QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 489 VAILECLLVNKADINAKIISG----IWKGY---------------------------TPL 517
            +I+  L+    D++    +G    +W  Y                           T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
           H AV + N  VI+ LL+   ++D ++  G +AL
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 335 GANVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQM 380
           G +VNV+  +  TPL IA              E      +S  +  GA + N  D  G+ 
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 381 PLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDA 438
            LH+A +     A   L+   A+ N ++   +TPLH AV          L+ + A  +DA
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           R   G  PL +A  +    ++E L+   A+VN+ D  G++ LH A  + NV     LL N
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
            A+ + +      +  TPL LA    +      LLD+  + D+ D
Sbjct: 181 GANKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 221

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 400 GANVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKD 445
           G +VN R     TPL IA              E+   + ++  +  GA +  +T + G+ 
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINA 504
            L++A         ++LL+  A+ N  D  GRT LH AV      + + L+ N+A D++A
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 505 KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           ++      G TPL LA     E ++  L++ + D++  D  G +ALH
Sbjct: 121 RM----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
           +VN +D E +  TPLH A        V  L++HGADV+  D  G +PLH A   G+  + 
Sbjct: 34  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
             L++HGA VN  + +  TPLH A  +        LL+HGA    + + G  PL
Sbjct: 94  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           +VN R+   +  TPLH A     +S + YLL+HGA V A+ + G  PL+ A    +  + 
Sbjct: 34  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E L+K  A VN +D +  T LH A       I + LL + AD   K       G TPL L
Sbjct: 94  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 149
Query: 520 AVESNNE 526
             + + +
Sbjct: 150 VKDGDTD 156

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           PL+ A   + +S+VE LL+  A+V++ D+ G   LH A    +  + E L+ + A +N  
Sbjct: 47  PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 104
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            ++ +WK +TPLH A       +   LL +  D   K+++GNT L
Sbjct: 105 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
           +VN +D E +  TPLH A        V  L++HGADV+  D  G +PLH A   G+  + 
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
             L++HGA VN  + +  TPLH A  +        LL+HGA    + + G  PL
Sbjct: 92  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           +VN R+   +  TPLH A     +S + YLL+HGA V A+ + G  PL+ A    +  + 
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E L+K  A VN +D +  T LH A       I + LL + AD   K       G TPL L
Sbjct: 92  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 147
Query: 520 AVESNNE 526
             + + +
Sbjct: 148 VKDGDTD 154

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           PL+ A   + +S+VE LL+  A+V++ D+ G   LH A    +  + E L+ + A +N  
Sbjct: 45  PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 102
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            ++ +WK +TPLH A       +   LL +  D   K+++GNT L
Sbjct: 103 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
           +VN +D E +  TPLH A        V  L++HGADV+  D  G +PLH A   G+  + 
Sbjct: 36  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
             L++HGA VN  + +  TPLH A  +        LL+HGA    + + G  PL
Sbjct: 96  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           +VN R+   +  TPLH A     +S + YLL+HGA V A+ + G  PL+ A    +  + 
Sbjct: 36  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E L+K  A VN +D +  T LH A       I + LL + AD   K       G TPL L
Sbjct: 96  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 151
Query: 520 AVESNNE 526
             + + +
Sbjct: 152 VKDGDTD 158

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           PL+ A   + +S+VE LL+  A+V++ D+ G   LH A    +  + E L+ + A +N  
Sbjct: 49  PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 106
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
            ++ +WK +TPLH A       +   LL +  D   K+++GNT L
Sbjct: 107 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 337 NVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
           +VNV+  +  TPL IA              E      +S  +  GA + N  D  G+  L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 383 HIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDART 440
           H+A +     A   L+   A+ N ++   +TPLH AV          L+ + A  +DAR 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
             G  PL +A  +    ++E L+   A+VN+ D  G++ LH A  + NV     LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
           + + +      +  TPL LA    +      LLD+  + D+ D
Sbjct: 182 NKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 402 NVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKDPL 447
           +VN R     TPL IA              E+   + ++  +  GA +  +T + G+  L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKI 506
           ++A         ++LL+  A+ N  D  GRT LH AV      + + L+ N+A D++A++
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                 G TPL LA     E ++  L++ + D++  D  G +ALH
Sbjct: 122 ----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 35/210 (16%)
Query: 314 LHLVV--QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
           LHL +  + K+    + + +    A +N +++  +TPLH+A+ +   +    L+  G D 
Sbjct: 9   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP-LHIAVEQKNMSALNYLL 430
            + D +G  PLH+A + G +A         +V    +   TP LH  ++  N +      
Sbjct: 69  ELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATNYN------ 113
Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNV 489
                       G   L++A     L IVE L+   A+VN+ +   GRT LHLAV +QN 
Sbjct: 114 ------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHL 519
            ++  LL   AD+N       ++GY+P  L
Sbjct: 162 DLVSLLLKCGADVNRV----TYQGYSPYQL 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A +N +N   +TPLH+AV          LL  G   + R   G  PL++A E   L+ V 
Sbjct: 33  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 461 QLLK------FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
            L +        + + +++  G T LHLA     + I+E L+   AD+NA+       G 
Sbjct: 93  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGR 149
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLD 540
           T LHLAV+  N  +++ LL    D++
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGADVN 175

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 35/211 (16%)
Query: 314 LHLVV--QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
           LHL +  + K+    + + +    A +N +++  +TPLH+A+ +   +    L+  G D 
Sbjct: 12  LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP-LHIAVEQKNMSALNYLL 430
            + D +G  PLH+A + G +A         +V    +   TP LH  ++  N +      
Sbjct: 72  ELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATNYN------ 116
Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNV 489
                       G   L++A     L IVE L+   A+VN+ +   GRT LHLAV +QN 
Sbjct: 117 ------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLA 520
            ++  LL   AD+N       ++GY+P  L 
Sbjct: 165 DLVSLLLKCGADVNRV----TYQGYSPYQLT 191

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A +N +N   +TPLH+AV          LL  G   + R   G  PL++A E   L+ V 
Sbjct: 36  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 461 QLLK------FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
            L +        + + +++  G T LHLA     + I+E L+   AD+NA+       G 
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGR 152
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLD 540
           T LHLAV+  N  +++ LL    D++
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVN 178

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 20/223 (8%)
Query: 337 NVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
           +VNV+  +  TPL IA              E      +S  +  GA + N  D  G   L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 383 HIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDART 440
           H+A       A   L+   A+ N ++   +TPLH AV          L+ + A  +DAR 
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
             G  PL +A  +    ++E L+   A+VN+ D  G++ LH A  + NV     LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
           + + +      +  TPL LA    +      LLD+  + D+ D
Sbjct: 182 NKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 402 NVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKDPL 447
           +VN R     TPL IA              E+   + ++  +  GA +  +T + G   L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKI 506
           ++A         ++LL+  A+ N  D  GRT LH AV      + + L+ N+A D++A++
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                 G TPL LA     E ++  L++ + D++  D  G +ALH
Sbjct: 122 ----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNA 405
           TPLH A ++   + V  L+  GADVN     G  PLH+A +NG+  I   L+  GA+VNA
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
           R+K   TP H+A +  +   +  L   GA V+AR+
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 377 QGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
            G  PLH A +NG+   +  L+  GA+VNAR+K   TPLH+A +  +   +  LL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           V+AR++ G  P ++A +  +  IV+ L    A+VN+
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
           +K   TPLH A +  +   +  LL  GA V+AR++ G  PL++A +  +  IV+ LL   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           A+VN+  + G T  HLA K  +  I++ L    AD+NA+
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           ++ G  PL+ A +  +   V++LL   A+VN+  + G T LHLA K  +  I++ LL   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
           AD+NA+       G TP HLA ++ +  ++ KLLD
Sbjct: 66  ADVNARSKD----GNTPEHLAKKNGHHEIV-KLLD 95

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 7/186 (3%)
Query: 361 VSLLVKHGADV-NVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
           +S  +  GA + N  D  G+  LH+A +     A   L+   A+ N ++   +TPLH AV
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 419 EQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
                     L+ + A  +DAR   G  PL +A  +    ++E L+   A+VN+ D  G+
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           + LH A  + NV     LL N A+ + +      +  TPL LA    +      LLD+  
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNN----REETPLFLAAREGSYETAKVLLDHFA 182
Query: 538 DLDVKD 543
           + D+ D
Sbjct: 183 NRDITD 188

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           + G+  L++A         ++LL+  A+ N  D  GRT LH AV      + + L+ N+A
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 501 -DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            D++A++      G TPL LA     E ++  L++ + D++  D  G +ALH
Sbjct: 83  TDLDARM----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
           D  G   LH   S +  + T+  + K    N++   +  G TP HIA   GN ++V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
           D     +     +QG   LH+AVG         L+  GA + +++ F +     A  + +
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
              IEL    G    +   +   K G   L H +  GH +A  L++EK GA     D   
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
             A D+A+
Sbjct: 209 AKAEDVAL 216

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
           KD + + PLH ++  Q  +  S L+    +VN+    D+ G  P HIA   G + +   +
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
                  ++N       T LH+AV +K      +L+E+GA V  + +  + PL+ A  + 
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
           +L ++E L    K+ VN  D+ G T L  A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
           D  G   LH   S +  + T+  + K    N++   +  G TP HIA   GN ++V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
           D     +     +QG   LH+AVG         L+  GA + +++ F +     A  + +
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
              IEL    G    +   +   K G   L H +  GH +A  L++EK GA     D   
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
             A D+A+
Sbjct: 209 AKAEDVAL 216

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
           KD + + PLH ++  Q  +  S L+    +VN+    D+ G  P HIA   G + +   +
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
                  ++N       T LH+AV +K      +L+E+GA V  + +  + PL+ A  + 
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
           +L ++E L    K+ VN  D+ G T L  A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
           D  G   LH   S +  + T+  + K    N++   +  G TP HIA   GN ++V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
           D     +     +QG   LH+AVG         L+  GA + +++ F +     A  + +
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
              IEL    G    +   +   K G   L H +  GH +A  L++EK GA     D   
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
             A D+A+
Sbjct: 209 AKAEDVAL 216

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
           KD + + PLH ++  Q  +  S L+    +VN+    D+ G  P HIA   G + +   +
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
                  ++N       T LH+AV +K      +L+E+GA V  + +  + PL+ A  + 
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
           +L ++E L    K+ VN  D+ G T L  A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Query: 361 VSLLVKHGADV-NVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
           +S  +  GA + N  D  G+  LH+A +     A   L+   A+   ++   +TPLH AV
Sbjct: 4   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 419 EQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
                     LL + A  +DAR   G  PL +A  +    ++E L+   A+VN+ D  G+
Sbjct: 64  SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           + LH A  + NV     LL N A+ + +      K  TPL LA    +      LLD+  
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNN----KEETPLFLAAREGSYETAKVLLDHFA 179
Query: 538 DLDVKD 543
           + D+ D
Sbjct: 180 NRDITD 185

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 424 SALNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
           S ++  +  GA +  +T + G+  L++A         ++LL+  A+    D  GRT LH 
Sbjct: 2   SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 483 AVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
           AV      + + LL N+A D++A++      G TPL LA     E ++  L++ + D++ 
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARM----HDGTTPLILAARLALEGMLEDLINSHADVNA 117
Query: 542 KDKNGNTALH 551
            D  G +ALH
Sbjct: 118 VDDLGKSALH 127

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 411 KTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
           ++PL +A ++ ++ AL+ LL+  G +V  R  +G+  L+IA    NL     L++    +
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 470 ----NSSDQF-GRTVLHLAVKIQNVAILECLLVNKADINAKIISG---------IWKGYT 515
                +S+ + G+T LH+AV  QNV ++  LL   A ++A+             I+ G  
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           PL  A    +E ++  L+++  D+  +D  GNT LH
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
           N R+ Y +TPL +A      +A++ L+E+  +++ +   G   L  AV+ + L I E+LL
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
              +NVN+ D  G+T L  ++      +   LL + A++N + +    +G TPL +A + 
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL----EGETPLIVASKY 144
Query: 524 NNEAVINKLLDYNPDLDVKDKNGNTA 549
               ++ KLL+   D+  +D  G TA
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTA 170

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 91  RDPTAV-EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN------ 143
           RD   V EIL+     V+  + EG+TPL+IA    + ++ + LID GA    +N      
Sbjct: 16  RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75
Query: 144 --HQGYNALHVAVGILLRKGA-DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQC 200
             + G       +  +L+    D+N  N +G  A   A E  +   ++L L+ G    + 
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG---RED 132
Query: 201 VCHENVKHGGQLLLHLV--RNG---HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL 255
           +  +N   G   L+  V  R G   +Q+ VKL++E GA+   KD   +TA+D A + G+ 
Sbjct: 133 IDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 256 KIVEFL 261
           +I + L
Sbjct: 192 EISKIL 197

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP-LHIAVQNGYVAIPNL 396
           V+  D E  TPL+IA+ +   +    L+  GAD+N+ ++    P L+   Q     +  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 397 IRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMH 454
           ++H   ++N  N+Y    L  A E+ ++  +  LLE G + +D +   G   L  AV + 
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 455 N-----LSIVEQLLKFKANVNSSDQFGRTVLHLA 483
                   IV+ L++  A+ +  D  GRT +  A
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
           V+ +D +G  PL+IAV N  + I   LI  GA++N +N  + +P   A  Q     L Y+
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 430 LEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKANVNSSDQFGRTVLHLAVKIQ 487
           L+H    ++   + G + L  A E  ++  V+ LL+  + +++  + FG T L  AV   
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV--- 148
Query: 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
                                G+ +G   L+       + ++  L++   D  +KD +G 
Sbjct: 149 ---------------------GLREG-NQLY-------QDIVKLLMENGADQSIKDNSGR 179
Query: 548 TAL 550
           TA+
Sbjct: 180 TAM 182

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 25/97 (25%)
Query: 96  VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
           V IL  N A+VN K+K+G TPLH+AAR G+ ++V V                        
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV------------------------ 53
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
            LL+ GAD+N ++ FGKTAF ++ +  N    E+  K
Sbjct: 54  -LLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADVN  D  G  PLH+A + G++ I   L++ GA+VNA++K+ KT   I+
Sbjct: 16  DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Query: 418 VEQKN 422
           ++  N
Sbjct: 76  IDNGN 80

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V+A+ + G  PL++A    +L IVE LLK  A+VN+ D+FG+T   +++   N
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 489 VAILECL 495
             + E L
Sbjct: 81  EDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 475 FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
            G+ +L  A   Q+  +   L+ N AD+NAK       GYTPLHLA    +  ++  LL 
Sbjct: 2   LGKKLLEAARAGQDDEV-RILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLK 56
Query: 535 YNPDLDVKDKNGNTALHPS 553
              D++ +DK G TA   S
Sbjct: 57  AGADVNAQDKFGKTAFDIS 75

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
           K  N  + + LL  GAN ++KD      +H A  +   D +  L++  ADVN+ DN+G +
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           PLH+A + G++ +   L++H A NV  RN    T   +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
           +PLH   +     + + + L+  GA +NV +  + TPLH+A      D V  L+++ AD+
Sbjct: 36  SPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 372 NVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIA 417
           N ++  G +PLH A   G   +  +L+ +GA V+  NKY + P+  A
Sbjct: 94  NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PN 395
           ++N  DD   +PLH A        V +L+  GA +NV++     PLH+A  +G+  I   
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+++ A++NA N++   PLH A           L+ +GA V    + G+ P+  A     
Sbjct: 86  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 145
Query: 456 LSIVEQLLKFKANVN 470
             + E+  K   N+N
Sbjct: 146 ELLRERAEKMGQNLN 160

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
           ++N  + +  +PLH A  +   + +  L+  GA+++   +    PL++A    +  IV++
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           LL++KA++N+ ++ G   LH A       + E L+ N A
Sbjct: 86  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
           ++N  D  G + LH A +    A++E L++  A IN           TPLHLA    +  
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRD 81
Query: 528 VINKLLDYNPDLDVKDKNGNTALH 551
           ++ KLL Y  D++  +++GN  LH
Sbjct: 82  IVQKLLQYKADINAVNEHGNVPLH 105

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
           +PLH   +     + + + L+  GA +NV +  + TPLH+A      D V  L+++ AD+
Sbjct: 41  SPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 372 NVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIA 417
           N ++  G +PLH A   G   +  +L+ +GA V+  NKY + P+  A
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PN 395
           ++N  DD   +PLH A        V +L+  GA +NV++     PLH+A  +G+  I   
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+++ A++NA N++   PLH A           L+ +GA V    + G+ P+  A     
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
Query: 456 LSIVEQLLKFKANVN 470
             + E+  K   N+N
Sbjct: 151 ELLRERAEKMGQNLN 165

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
           D+N  D+ G  PLH A + G  A+   LI  GA +N  N+   TPLH+A    +   +  
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           LL++ A ++A  + G  PL+ A       + E L+   A V+  +++G   +  A     
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA----- 145
Query: 489 VAILECLLVNKADINAKIISGI------WKGYT 515
            A L  LL  +A+   + ++ I      WKG T
Sbjct: 146 KAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
           ++N  D  G + LH A +    A++E L++  A IN           TPLHLA    +  
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRD 86
Query: 528 VINKLLDYNPDLDVKDKNGNTALH 551
           ++ KLL Y  D++  +++GN  LH
Sbjct: 87  IVQKLLQYKADINAVNEHGNVPLH 110

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
           K  N  + + LL  GAN ++KD      +H A  +   D +  L+++ ADVN+ DN+G +
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           PLH+A + G++ +   L++H A NV  RN    T   +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
           K  N  + + LL  GAN ++KD      +H A  +   D +  L++  ADVN+ DN+G +
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           PLH+A + G++ +   L++H A NV  RN    T   +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
           K  N  + + LL  GAN ++KD      +H A  +   D +  L++  ADVN+ DN+G +
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           PLH+A + G++ +   L++H A NV  RN    T   +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
           + HGADVN + N GQ    PL      N  +A   L+++GANVN  +   + PLH A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
            +       L+ GA + AR   G+DPL IA+E  N  IV   +L K +    +  Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           L HGA V+     G+D   PL  A   ++L   E LL+  ANVN +D  GR  LH A  +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
            +   L CL + + AD+ A+      +G  PL +A+E+ N  ++  L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
           + HGADVN + N GQ    PL      N  +A   L+++GANVN  +   + PLH A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
            +       L+ GA + AR   G+DPL IA+E  N  IV   +L K +    +  Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           L HGA V+     G+D   PL  A   ++L   E LL+  ANVN +D  GR  LH A  +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
            +   L CL + + AD+ A+      +G  PL +A+E+ N  ++  L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 45  DGKSCLHIAATKNIR-LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           DG + L +AA   +  ++  L+  + DVNAVD+LG + LH  A++      A  +L  N 
Sbjct: 14  DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN--VDAAVVLLKNG 71
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           AN +++N + +TPL +AAR G+Y+  +VL+DH A+ +  +H
Sbjct: 72  ANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDH 112

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH-IAVQNGYVAIPNLIRHGAN 402
           +  TPL +A        +  L+   ADVN +D+ G+  LH  A  N   A   L+++GAN
Sbjct: 14  DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
            + +N   +TPL +A  + +      LL+H A  D    + + P  IA E  +  IV  L
Sbjct: 74  KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
           + HGADVN + N GQ    PL      N  +A   L+++GANVN  +   + PLH A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
            +       L+ GA + AR   G+DPL IA+E  N  IV   +L K +    +  Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           L HGA V+     G+D   PL  A   ++L   E LL+  ANVN +D  GR  LH A  +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
            +   L CL + + AD+ A+      +G  PL +A+E+ N  ++  L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
           K  N  + + LL  GAN ++KD      +H A  +   D +  L++  ADVN+ DN+G +
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           PLH+A + G++ +   L++H A NV  RN    T   +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 208 HGGQLLLHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           H G+ LLH+    G   +V+ +L+ G++ + KD    T L  A  HGHLK+VE LL H A
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 267 CVDSLQFIH-SPLHLAIEKQHIAIVQ 291
            V++  + + SPLH A +  H+ IV+
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVK 93

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           LL +G++ NVKD    TPLH A        V LL++H A VN    Q   PLH A +NG+
Sbjct: 29  LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGH 88
Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           V I   L+ +GA+ NA N +   P+    + ++M +L  L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDY-TDDESMKSLLLLPE 129

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
           N   +T LHIA  + ++ ++ YLL++G+  + +   G  PL+ A    +L +VE LL+ K
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
           A VN++     + LH A K  +V I++ LL   A  NA  I G+
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADV   D  G  PLH+A +NG++ +   L+  GA+VNA++K+ KT   I+
Sbjct: 20  DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Query: 418 VEQKN 422
           ++  N
Sbjct: 80  IDNGN 84

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+V A++K   TPLH+A    ++  +  LLE GA V+A+ + GK    I+++  N
Sbjct: 25  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 456 LSIVEQL 462
             + E L
Sbjct: 85  EDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V A+ + G  PL++A    +L +V+ LL+  A+VN+ D+FG+T   +++   N
Sbjct: 25  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 489 VAILECL 495
             + E L
Sbjct: 85  EDLAEIL 91

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V +L+ +GADV   D  G  PLH+A +NG++ +   L+  GA+V A++K+ KT   I+
Sbjct: 38  DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 418 VEQKN 422
           ++  N
Sbjct: 98  IDNGN 102

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +GA+V A++K   TPLH+A    ++  +  LLE GA V A+ + GK    I+++  N
Sbjct: 43  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 456 LSIVEQL 462
             + E L
Sbjct: 103 EDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+ +GA V A+ + G  PL++A    +L +V+ LL+  A+V + D+FG+T   +++   N
Sbjct: 43  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 489 VAILECL 495
             + E L
Sbjct: 103 EDLAEIL 109

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 16/192 (8%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           K  +  GA+VN  D +  TPL +A+ ++    V+ L K GAD  + +   +  LH A  N
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 389 ----GYVAIPNLIRHGANVNARNKYAKTPLHIAVE---QKNMSALNYLLEHGAQV----- 436
                 V   N  +   ++   ++   T L I      +  +++   L+E GA+V     
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 437 ---DARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAIL 492
              D+    G+  L+ A ++ N  IV+ L+  K +N +  D+ G+T + LA +   + ++
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 493 ECLLVNKADINA 504
             L+   A + A
Sbjct: 330 XYLIQQGASVEA 341

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 31  LAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89
           +AE+  +I++P        LH AA + N+  +R  L+  V VN +D  G+T L+      
Sbjct: 66  VAEQAESIDNP--------LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 90  TRDPTAVEILKTN-RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
            +D   VE L T     +N +NK GDT LH AA  G   +V++L+  GA T+ +N
Sbjct: 118 HKD--IVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTECKNHQGYNALHVAVGILLRKGADI 164
           VNI +  G+T LH +    N+ +V+ L+D G    + +N  GY+ + +     L+   DI
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
                  +T  Q+ + + N  A                       GQ  L L V +G  +
Sbjct: 164 -------ETVLQL-FRLGNINA------------------KASQAGQTALMLAVSHGRVD 197
Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
            VK +L   A+V+ +D    TAL  A EHGH +I   LL   +C  SL
Sbjct: 198 VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILE 493
           Q++A    G  PL++AV   +  +V  L    A++N  +   GRT LHLAV+ Q  ++LE
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
            LL   AD  A+    ++ G TPL  A+   N  ++ +LL
Sbjct: 210 LLLKAGADPTAR----MYGGRTPLGSALLRPN-PILARLL 244

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILE 493
           Q++A    G  PL++AV   +  +V  L    A++N  +   GRT LHLAV+ Q  ++LE
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
            LL   AD  A+    ++ G TPL  A+   N  ++ +LL
Sbjct: 210 LLLKAGADPTAR----MYGGRTPLGSALLRPN-PILARLL 244

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 397 IRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           +R G N VN  ++   TPL  A     +  + +LLE GA      +  +  L +A     
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
             IV  LL+   ++N  D  G T L  AV+  +V  +E LL   AD+  +  S    GYT
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS----GYT 137
Query: 516 PLHLAV 521
           P+ LAV
Sbjct: 138 PMDLAV 143

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
           +N  D+E  TPL  A        V  L+++GAD  ++    +  L +A   GY  I   L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
           +  G +VN  +    TPL  AV   ++  +  LLE GA     T  G + + +AV +   
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 457 SIVE----QLLKFKANV 469
           S+ +     LLK   N+
Sbjct: 149 SVQQVIESHLLKLLQNI 165

>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1 Length = 273

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 397 IRHGANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDA--------RTQ----- 441
           ++   N +  + Y K  T LHIA+E++N + +  L+E+GA V A        +T+     
Sbjct: 86  LKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 442 -LGKDPLYIAVEMHNLSIVEQLLKFK---ANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497
             G+ PL +A   + L+IV+ LL+     A++++ D  G TVLH  V++ +  +     V
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 498 NKADINAKIISGI-------------WKGYTPLHLAVESNNEAVINKLL 533
             +  N  +I G               KG TPL LA  S    V+  +L
Sbjct: 206 T-SXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
           +N  D+E  TPL  A        V  L+++GAD  ++    +  L +A   GY  I   L
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
           +  G +VN  +    TPL  AV   ++  +  LLE GA     T  G + + +AV +   
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 457 SIVE----QLLKFKANV 469
           S+ +     LLK   N+
Sbjct: 165 SVQQVIESHLLKLLQNI 181

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 397 IRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           +R G N VN  ++   TPL  A     +  + +LLE GA      +  +  L +A     
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
             IV  LL+   ++N  D  G T L  AV   +V  +E LL   AD+  +  S    GYT
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADS----GYT 137
Query: 516 PLHLAV 521
           P+ LAV
Sbjct: 138 PMDLAV 143

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 334 HGANVNVKDDENKTPLHIAIESQC---WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           HG  V      N  PL + ++S     +D V  ++    D ++ +++G   LH AV  G+
Sbjct: 27  HGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82
Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
             I   L++ G NVNA +    TPLH A    N+    +L+E GA V A T
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
           +N  D+E  TPL  A        V  L+++GAD  ++    +  L +A   GY  I   L
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
           +  G +VN  +    TPL  AV   ++  +  LLE GA     T  G + + +AV +   
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 457 SI 458
           S+
Sbjct: 147 SV 148

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V   V  G DVN     G+ PLH A   G + I   L+  GA++NA +K+  TPL  A
Sbjct: 16  DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           V + ++S +  LL  GA    +T  G D L  A+E  +   ++ LL+
Sbjct: 76  VYEGHVSCVKLLLSKGAD---KTVKGPDGL-TALEATDNQAIKALLQ 118

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
           D V   V  G DVN     G+ PLH A   G + I   L+  GA++NA +K+  TPL  A
Sbjct: 21  DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           V + ++S +  LL  GA    +T  G D L  A E  +   ++ LL+
Sbjct: 81  VYEGHVSCVKLLLSKGAD---KTVKGPDGL-TAFEATDNQAIKALLQ 123

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 348 PLHIAIESQC---WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
           PL + ++S     +D V  ++    D ++ +++G   LH AV  G+  I   L++ G NV
Sbjct: 37  PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
           NA +    TPLH A    N+    +L+E GA V A T
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           P + A    +   + QLL+ + +V++ D+ GRT L     + +   +  L    AD++ +
Sbjct: 48  PWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            + G   G T LH+A       V+  L++   D++V+D+ G TAL 
Sbjct: 107 DMRG---GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	553
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-114
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-113
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-64
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-85
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-69
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-67
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-78
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-75
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-74
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-70
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-68
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-65
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-56
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-56
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-64
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-60
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-60
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-55
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-41
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-63
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-61
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-59
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-55
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-61
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-59
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-57
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-55
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-47
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-63
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-59
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-59
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-56
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-63
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-63
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-60
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-53
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-51
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-58
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-58
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-55
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-51
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-58
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-55
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-55
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-53
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-48
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-58
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-55
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-51
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-49
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-57
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-56
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-53
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-49
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-45
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-56
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-56
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-55
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-50
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-56
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-56
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-52
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-51
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-54
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-53
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-49
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-49
2rfa_A	232	Transient receptor potential cation channel subfa	3e-44
2rfa_A	232	Transient receptor potential cation channel subfa	2e-36
2rfa_A	232	Transient receptor potential cation channel subfa	3e-35
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	3e-26
2rfa_A	232	Transient receptor potential cation channel subfa	1e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-49
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-43
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-47
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-42
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-46
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-45
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-38
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-37
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-36
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-44
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-43
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-40
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-42
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-39
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-37
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-42
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-41
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-41
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-39
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-39
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-37
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-35
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-38
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-36
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-37
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-31
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	7e-35
2pnn_A	273	Transient receptor potential cation channel subfa	1e-32
2pnn_A	273	Transient receptor potential cation channel subfa	7e-32
2pnn_A	273	Transient receptor potential cation channel subfa	2e-30
2pnn_A	273	Transient receptor potential cation channel subfa	9e-28
2pnn_A	273	Transient receptor potential cation channel subfa	3e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-34
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-29
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-34
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-31
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-29
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-30
2etb_A	256	Transient receptor potential cation channel subfam	2e-30
2etb_A	256	Transient receptor potential cation channel subfam	4e-30
2etb_A	256	Transient receptor potential cation channel subfam	1e-29
2etb_A	256	Transient receptor potential cation channel subfam	4e-27
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	2e-19
2etb_A	256	Transient receptor potential cation channel subfam	3e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  346 bits (890), Expect = e-114
 Identities = 125/461 (27%), Positives = 198/461 (42%), Gaps = 60/461 (13%)

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
            +     + G TPLH+A+  G+  +V+ L+  GA     N +    LH+A          
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
            LL+  A +N +    +T    A                                     
Sbjct: 65  YLLQNKAKVNAKAKDDQTPLHCA------------------------------------- 87

Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFI 274
             R GH N VKL+LE  AN +       T L IA   GH++ V  LL+  A    + +  
Sbjct: 88  -ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146

Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
            +PLH+A +   + + +LLL     + + N  G     PLH+ V   + +    K LL  
Sbjct: 147 FTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLDIV--KLLLPR 201

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
           G + +       TPLHIA +    +    L+++G   N    QG  PLH+A Q G+  + 
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261

Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
             L+   AN N  NK   TPLH+  ++ ++   + L++HG  VDA T++G  PL++A   
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321

Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
            N+ +V+ LL+ +A+VN+  + G + LH A +  +  I+  LL N A  N         G
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS----DG 377

Query: 514 YTPLHLAVESNNEAVINKL---LDYNPDLDVKDKNGNTALH 551
            TPL +A      +V + L    D    + V DK+  +   
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  344 bits (884), Expect = e-113
 Identities = 125/489 (25%), Positives = 205/489 (41%), Gaps = 69/489 (14%)

Query: 34  RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
            G +      + G + LH+A+    + +V+ LL+     N  +    T LH +A+     
Sbjct: 3   PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLH-MAARA-GH 59

Query: 93  PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
               + L  N+A VN K K+  TPLH AAR G+  MV++L+++ A+       G+  LH+
Sbjct: 60  TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119

Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHE 204
           A        V  LL K A        G T   +A                          
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVA-------------------------- 153

Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
                        + G     +L+LE+ A+ +A  +   T L +AV H +L IV+ LL  
Sbjct: 154 ------------AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201

Query: 265 GACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           G    S     ++PLH+A ++  + + + LL       + N +      PLHL  Q    
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLL---QYGGSANAESVQGVTPLHLAAQEG-- 256

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
           +  M   LL   AN N+ +    TPLH+  +        +L+KHG  V+     G  PLH
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316

Query: 384 IAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
           +A   G + +   L++H A+VNA+ K   +PLH A +Q +   +  LL++GA  +  +  
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376

Query: 443 GKDPLYIAVEMHNLSIVEQLLKF---KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
           G  PL IA  +  +S+ + L       + V  SD+   +             ++ +L   
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVS 427

Query: 500 ADINAKIIS 508
            D   ++IS
Sbjct: 428 EDEGEELIS 436

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  214 bits (548), Expect = 5e-64
 Identities = 75/350 (21%), Positives = 133/350 (38%), Gaps = 62/350 (17%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           A      K+G T    A    +  +A+LL ER A+ N     +G + LH+A   N + +V
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIV 195

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           +LLL      ++    G T LH +A+ + +       L     + N ++ +G TPLH+AA
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLH-IAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAA 253

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
           + G+ +MV +L+   A+    N  G   LH+           +L++ G  ++     G T
Sbjct: 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
              +A                                         G+   VK +L+  A
Sbjct: 314 PLHVA--------------------------------------SHYGNIKLVKFLLQHQA 335

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
           +V+AK +L  + L  A + GH  IV  LL +GA  + +     +PL +A    +I++  +
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395

Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
           L    +    +        +    V             +L    +   + 
Sbjct: 396 LKVVTDETSFVLVSDKHRMSFPETV-----------DEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  213 bits (546), Expect = 9e-64
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
            G +     +   TPLH+A        V  L++ GA  NV + + + PLH+A + G+  +
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
              L+++ A VNA+ K  +TPLH A    + + +  LLE+ A  +  T  G  PL+IA  
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK 512
             ++  V  LL+ +A+     + G T LH+A K   V + E LL   A  NA   +    
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---- 178

Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           G TPLH+AV  NN  ++  LL           NG T LH
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  268 bits (687), Expect = 2e-85
 Identities = 69/460 (15%), Positives = 131/460 (28%), Gaps = 109/460 (23%)

Query: 98  ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL 157
           +    + N    + E    +H+AAR G    VR LI+ G                     
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-------------------- 44

Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
                   ++N FG TA  +A                                       
Sbjct: 45  -----SPTIQNRFGCTALHLA--------------------------------------C 61

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP 277
           + G  +  K +   G          +  + +AV      +V  L++             P
Sbjct: 62  KFGCVDTAKYLASVGEVHSLWHG--QKPIHLAVMANKTDLVVALVEGAKERG-----QMP 114

Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
             L  E     + +         I  + K    +  LH  V        M K L+  GA+
Sbjct: 115 ESLLNECDEREVNE---------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLV-----KHGADVNVIDNQGQMPLHIAVQNGYVA 392
              KD  ++TPL  A+E +  +A+ L++     K    ++  + QG   LH A+   +  
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

Query: 393 IPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAV 451
           +    +  G +VN  +     PL+++V    +     LL+       +     +      
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN------ 279

Query: 452 EMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511
                            V          +  A       +L+ L     ++   + +G  
Sbjct: 280 --------------GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTG-- 323

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                     +    AV    L  +  +  + ++   +  
Sbjct: 324 --AGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  225 bits (575), Expect = 8e-69
 Identities = 54/434 (12%), Positives = 123/434 (28%), Gaps = 98/434 (22%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRL 60
             +   ++ E +     A    QT   + L E G +        G + LH+A     +  
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDT 68

Query: 61  VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
            + L       +     G   +H +A +  +    V  L      V    + G  P  + 
Sbjct: 69  AKYLASVGEVHSLWH--GQKPIH-LAVMANKTDL-VVAL------VEGAKERGQMPESLL 118

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA----------VGILLRKGADINVENNF 170
                 ++  +          K+ +G  ALH            + IL++ GA    ++  
Sbjct: 119 NECDEREVNEIGSH------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172

Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
            +T    A                                      +   ++ A+ L+++
Sbjct: 173 DETPLMRA--------------------------------------MEFRNREALDLMMD 194

Query: 231 KG-----ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
                    +   ++   + L  A+      +    ++ G  V+        PL+L++  
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254

Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
             + + + LL++ +  +                               ++G  V      
Sbjct: 255 AMVLLTKELLQKTDVFLIQACP-------------------------YHNGTTVLPDRVV 289

Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
               +  A +    + + LL +   +V    N G        +    A+    +   A V
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

Query: 404 NARNKYAKTPLHIA 417
             R++       ++
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  220 bits (564), Expect = 3e-67
 Identities = 57/344 (16%), Positives = 119/344 (34%), Gaps = 37/344 (10%)

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
            +      N    D      + +A   G    V  L++ G       +F  + LHLA + 
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
             +   + L    +     +      + P+HL V     +      L+            
Sbjct: 64  GCVDTAKYLA---SVGEVHSLWH--GQKPIHLAVMANKTDLV--VALVEGAKERG----- 111

Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN---LIRHGA 401
            + P  +  E    +            +V   +GQ  LH  V  G   +     L++ GA
Sbjct: 112 -QMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164

Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLE-----HGAQVDARTQLGKDPLYIAVEMHNL 456
           +  A++K  +TPL  A+E +N  AL+ +++        ++D   + G   L+ A+ ++  
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

Query: 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK---------II 507
            +  + ++   +VN  D      L+L+V+   V + + LL        +         ++
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

Query: 508 SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                    +  A + + + V+  L +   ++      G     
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  248 bits (637), Expect = 4e-78
 Identities = 97/410 (23%), Positives = 154/410 (37%), Gaps = 78/410 (19%)

Query: 27  IAKLLAERGANINDPFPDDGKSCLHIAATKN--IRLVRLLLEYNVDVNAVDNLGNTVLHT 84
            A  LA+  A       +  K  L  AA      +L+ LL   NV+ +A D   +T LH 
Sbjct: 6   SALDLADPSAKAVLT-GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH- 63

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           +A+   R    V++L  + A+V+ K+K G  PLH A   G+Y++  +L+ HGA     + 
Sbjct: 64  LAAGYNRVRI-VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

Query: 145 QGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
             +  LH A          +LL  GAD  + N  GK+A  MA   +    +    K    
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK---- 178

Query: 197 VEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH-- 254
                        G  LL   R      VK  L        + Q  +TAL  AV   H  
Sbjct: 179 -------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK 225

Query: 255 -LKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKA 312
             ++ E LL  GA V+   +   +PLH+A E+ H  ++++L +                 
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK----------------- 268

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
                                HGA +N  D   +T LH A  +       LL+ +G+D +
Sbjct: 269 ---------------------HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307

Query: 373 VIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
           +I  QG     +  +        ++     +   +      L  A +  +
Sbjct: 308 IISLQGFTAAQMGNEAVQQ----ILSESTPMRTSDVD--YRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  245 bits (627), Expect = 1e-76
 Identities = 79/446 (17%), Positives = 147/446 (32%), Gaps = 114/446 (25%)

Query: 94  TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK-MVRVLIDHGAHTECKNHQGYNALHV 152
           +A+++   + A   +  +     L  AAR+GN + ++ +L     +    + +    LH+
Sbjct: 6   SALDLADPS-AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 153 AVG--------ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHE 204
           A G        +LL+ GAD++ ++  G      A                          
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA-------------------------- 98

Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
                          GH    +L+L+ GA V+A D    T L  A     +++   LL H
Sbjct: 99  ------------CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 265 GACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           GA    +     S + +A   +    +                                 
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEF----------------------------- 177

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
                               +  + L  A E+     V   +             +  LH
Sbjct: 178 --------------------KGHSLLQAAREADL-AKVKKTLALEIINFKQPQSHETALH 216

Query: 384 IAVQNGYVAIPN----LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
            AV + +         L+R GANVN +NK   TPLH+A E+ +   +  L +HGA+++A 
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276

Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
             LG+  L+ A    +L     LL + ++ +     G T   +  +      ++ +L   
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSES 331

Query: 500 ADINAKIISGIWKGYTPLHLAVESNN 525
             +    +         L  A ++ +
Sbjct: 332 TPMRTSDVDY------RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  240 bits (616), Expect = 6e-75
 Identities = 80/379 (21%), Positives = 138/379 (36%), Gaps = 48/379 (12%)

Query: 124 GNY-KMVRVLIDHGAHTECKNHQGYNALHVA---------VGILLRKGADINVENNFGKT 173
           G + K    L D  A          + L  A         + +L     + +  +    T
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGHQNAVKLILEK 231
              +A        ++L L++G +V       + K  GG + LH     GH    +L+L+ 
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADV-------HAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
           GA V+A D    T L  A     +++   LL HGA    +     S + +A   +    +
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
               +                + L    +    +    K  L        +   ++T LH
Sbjct: 174 TYEFK--------------GHSLLQAAREA---DLAKVKKTLALEIINFKQPQSHETALH 216

Query: 351 IAIES---QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNAR 406
            A+ S   +      LL++ GA+VN  +     PLH+A +  +  +   L +HGA +NA 
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
           +   +T LH A    ++     LL +G+     +  G     +  E      V+Q+L   
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSES 331

Query: 467 ANVNSSDQFGRTVLHLAVK 485
             + +SD   R  L  A K
Sbjct: 332 TPMRTSDVDYR--LLEASK 348

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  238 bits (611), Expect = 3e-74
 Identities = 80/385 (20%), Positives = 142/385 (36%), Gaps = 48/385 (12%)

Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH-QNAVKL 227
            FGK+A                                ++    LL   R+G+ +  + L
Sbjct: 2   EFGKSA-------------LDLADPSAKAV-----LTGEYKKDELLEAARSGNEEKLMAL 43

Query: 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQH 286
           +     N HA D    T L +A  +  ++IV+ LL HGA V +  +    PLH A    H
Sbjct: 44  LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK 346
             + +LLL    +   +N        PLH    +          LL HGA+  + +   K
Sbjct: 104 YEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVC--SLLLSHGADPTLVNCHGK 158

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR 406
           + + +A   +  + ++   K  +            L  A +     +   +        +
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHS-----------LLQAAREADLAKVKKTLALEIINFKQ 207

Query: 407 NKYAKTPLHIAVE---QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
            +  +T LH AV     K       LL  GA V+ + +    PL++A E  +  ++E L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
           K  A +N+ D  G+T LH A    ++     LL   +D +   +    +G+T   +  E 
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL----QGFTAAQMGNE- 322

Query: 524 NNEAVINKLLDYNPDLDVKDKNGNT 548
                + ++L  +  +   D +   
Sbjct: 323 ----AVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  228 bits (583), Expect = 5e-70
 Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 25/332 (7%)

Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLK-IVEFLLDHGACVDSL-QFIHSPLHLAI 282
              + +  A      +  K  L  A   G+ + ++  L        +      +PLHLA 
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66

Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
               + IVQLLL    +  +++ K      PLH       +  T  + LL HGA VN  D
Sbjct: 67  GYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVT--ELLLKHGACVNAMD 121

Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGAN 402
               TPLH A      +  SLL+ HGAD  +++  G+  + +A              G  
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-- 179

Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE---MHNLSIV 459
                    + L  A E  +++ +   L        + Q  +  L+ AV         + 
Sbjct: 180 --------HSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E LL+  ANVN  ++   T LH+A +  +  ++E L  + A +NA        G T LH 
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS----LGQTALHR 286

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A  + +      LL Y  D  +    G TA  
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 6e-33
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 33/200 (16%)

Query: 3   ADVNATNKEGITLFQQAI-----------VSSQTP-----------IAKLLAERGANIND 40
           AD    N  G +    A                +            + K LA    N   
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207

Query: 41  PFPDDGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAV 96
           P     ++ LH A      K  ++  LLL    +VN  +    T LH VA+ +  +   +
Sbjct: 208 P--QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH-VAAERAHNDV-M 263

Query: 97  EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--- 153
           E+L  + A +N  +  G T LH AA  G+ +  R+L+ +G+     + QG+ A  +    
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323

Query: 154 VGILLRKGADINVENNFGKT 173
           V  +L +   +   +   + 
Sbjct: 324 VQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           A+VN  NK+ +T    A   +   + ++L + GA +N  D     G++ LH AA    ++
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD---SLGQTALHRAALAGHLQ 294

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
             RLLL Y  D + +   G T    + +       AV+ + +    +   +   D  L  
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQ-MGN------EAVQQILSESTPMRTSDV--DYRLLE 345

Query: 120 AARTGN 125
           A++ G+
Sbjct: 346 ASKAGD 351

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  224 bits (572), Expect = 3e-68
 Identities = 65/399 (16%), Positives = 127/399 (31%), Gaps = 67/399 (16%)

Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
            K    +      + +   A            L+               H          
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQ---------------HYSLYPNPQGY 69

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP 277
            NG+                 +      L      G   I E +      +   +   + 
Sbjct: 70  GNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTV 128

Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
           LH           + L+                                  K  +  GA+
Sbjct: 129 LHWIASNSSAEKSEDLI------------------------------VHEAKECIAAGAD 158

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
           VN  D +  TPL +A+ ++    V+ L+K GAD  + +   +  LH A  N    +   +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

Query: 397 IRH---GANVNARNKYAKTPLHIAVEQKN---MSALNYLLEHGAQVDARTQLGKD----- 445
           +       ++   ++   T L I    +    +++   L+E GA+VD      KD     
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278

Query: 446 ---PLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
               L+ A ++ N+ IV+ L+  K +N +  D+ G+T + LA +   + ++  L+   A 
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338

Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540
           + A         +T   LA  +N+  +++      P+ +
Sbjct: 339 VEAVDA----TDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  215 bits (551), Expect = 4e-65
 Identities = 62/358 (17%), Positives = 116/358 (32%), Gaps = 28/358 (7%)

Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR 159
           +      +         L  A+  G  K  R  + H +        G     +       
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFL-GDFNHT 82

Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
                                  ++   E   +  VN+         +H   +L  +  N
Sbjct: 83  NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID------PRHNRTVLHWIASN 135

Query: 220 GHQNAV--------KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
                         K  +  GA+V+A D    T L +AV     ++V +L+  GA     
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195

Query: 272 -QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT-TMFK 329
            +   S LH A   +   ++  +L       +I          L +V   +  +     K
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

Query: 330 TLLYHGANVNV--------KDDENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQM 380
            L+  GA V+         +  + +T LH A +      V  LV   G++ +  D  G+ 
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315

Query: 381 PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD 437
           P+ +A Q G + +   LI+ GA+V A +    T   +A    + + ++       + +
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  193 bits (492), Expect = 1e-56
 Identities = 55/342 (16%), Positives = 104/342 (30%), Gaps = 68/342 (19%)

Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAI 289
           EK    H      + +L  A   G++K     L H +          P        +  +
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY--------PNPQGYGNGNDFL 76

Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
                                                       +       + E+   L
Sbjct: 77  GDFNHT--------------------------------------NLQIPTEPEPESPIKL 98

Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI---------PNLIRHG 400
           H       +     + +   ++       +  LH    N                 I  G
Sbjct: 99  HTEAAG-SYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
           A+VNA +    TPL +AV  +    + YL++ GA      +  +  L+ A    +  ++ 
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

Query: 461 QLL---KFKANVNSSDQFGRTVLHLAVK---IQNVAILECLLVNKADINAKIISGIWK-- 512
            +L   K K ++   D+ G T L +         VA  + L+   A ++    +      
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 513 --GYTPLHLAVESNNEAVINKLLDYN-PDLDVKDKNGNTALH 551
             G T LH A + +N  ++  L+     + D +D++G T + 
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  191 bits (488), Expect = 5e-56
 Identities = 65/318 (20%), Positives = 123/318 (38%), Gaps = 27/318 (8%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLV 61
               N      +    Q   +    +            +P   +    LH  A  +  + 
Sbjct: 51  KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP-EPESPIKLHTEAAGSYAIT 109

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVAS------IKTRDPTAVEILKTNRANVNIKNKEGDT 115
             +   +V++    +   TVLH +AS       +       +      A+VN  + + +T
Sbjct: 110 EPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK---GADI 164
           PL +A      ++V  L+  GA     N    +ALH A        +  +L       DI
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

Query: 165 NVENNFGKTAFQMAYEMKNFPAI---ELFLKYG--VNVEQCVCHENVKHGGQLLLHL-VR 218
              +  G TA  +    +    +   +L ++ G  V+ +     ++ K+ G+  LH   +
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

Query: 219 NGHQNAVK-LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
             +   VK L+ EKG+N   +D+  KT + +A + G +++V +L+  GA V+++    H+
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348

Query: 277 PLHLAIEKQHIAIVQLLL 294
              LA    H  IV +  
Sbjct: 349 ARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (290), Expect = 3e-28
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 25/185 (13%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLL---AERGANINDPFPDDGKSCLHIAATKN-- 57
           AD    NK   +   QA  +    +   +    +   +I +    +G + L I A     
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGR 248

Query: 58  --IRLVRLLLEYNVDVN--------AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVN 107
             +   +LL+E    V+        +    G T LH  A+  +  P    ++    +N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKD 307

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLR 159
            ++++G TP+ +AA+ G  ++V  LI  GA  E  +   + A  +A        V I  R
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

Query: 160 KGADI 164
              + 
Sbjct: 368 CRPER 372

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  211 bits (541), Expect = 1e-64
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 13/283 (4%)

Query: 248 IAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKG 307
           +   H H      L+  G+ + S+      +  +          + L  N    +  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58

Query: 308 PTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
             + +P+H         +   + L+  G  VN+   ++ +PLH A        V +L+KH
Sbjct: 59  --DWSPMHEAAIHGHQLSL--RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
           GA VN +      PL  A  +G     N L++HGA+V   +    +P+H A  + ++  +
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECV 173

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           N L+ +G  +D +      PLY+A E    + V++LL+  A+VN   +   + LH  V+ 
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRT 232

Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
            +  +   L+   AD  AK       G  P+ L    +  A +
Sbjct: 233 ASEELACLLMDFGADTQAKNAE----GKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  200 bits (512), Expect = 1e-60
 Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 56/329 (17%)

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQ-----GYNALHVA--VGILLRKGADINVENNFG 171
           + +   ++     L+  G+H    + +     G          GI L     +  +    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP-LMGDAVSD 59

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
            +    A                                        +GHQ +++ ++ +
Sbjct: 60  WSPMHEA--------------------------------------AIHGHQLSLRNLISQ 81

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
           G  V+       + L  A   GHL  V+ LL HGA V+ +    H+PL  A        V
Sbjct: 82  GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 141

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
            LLL+ +  ++   +   +   P+H   +R         +L+ +G N++ K     TPL+
Sbjct: 142 NLLLQ-HGASVQPESDLAS---PIHEAARRGHVECV--NSLIAYGGNIDHKISHLGTPLY 195

Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
           +A E+Q    V  L++ GADVN        PLH  V+     +   L+  GA+  A+N  
Sbjct: 196 LACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254

Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
            K P+ +   +  ++ L +L   GA +  
Sbjct: 255 GKRPVELVPPESPLAQL-FLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  200 bits (511), Expect = 2e-60
 Identities = 67/364 (18%), Positives = 120/364 (32%), Gaps = 92/364 (25%)

Query: 52  IAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN 110
           + ++ +       L+     + ++D     +  +  +           ++     +    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGP----RDFPGIRLLSNPLMGDA 56

Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA 162
               +P+H AA  G+   +R LI  G           + LH A        V ILL+ GA
Sbjct: 57  VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ 222
            +N       T    A                                        +G  
Sbjct: 117 QVNGVTADWHTPLFNA--------------------------------------CVSGSW 138

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
           + V L+L+ GA+V  +  L  + +  A   GH++ V  L+ +G  +D     + +PL+LA
Sbjct: 139 DCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197

Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
            E Q  A V+ LL                                        GA+VN +
Sbjct: 198 CENQQRACVKKLLE--------------------------------------SGADVN-Q 218

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
                +PLH  + +   +   LL+  GAD    + +G+ P+ +      +A   L R GA
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGA 278

Query: 402 NVNA 405
           ++  
Sbjct: 279 SLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  186 bits (474), Expect = 5e-55
 Identities = 69/358 (19%), Positives = 113/358 (31%), Gaps = 98/358 (27%)

Query: 27  IAKLLAERGANIN----DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVL 82
            +  L  RG+++          DG           I     LL   +  +AV     + +
Sbjct: 10  HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI----RLLSNPLMGDAVS--DWSPM 63

Query: 83  HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK 142
           H  A+I     + +  L +    VNI   +  +PLH A   G+   V++L+ HGA     
Sbjct: 64  H-EAAIHGHQLS-LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 143 NHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
               +  L  A        V +LL+ GA +  E++   +    A                
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEA---------------- 164

Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
                                  R GH   V  ++  G N+  K     T L +A E+  
Sbjct: 165 ----------------------ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202

Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL 314
              V+ LL+ GA V+  +   SPLH  +      +  LL+                    
Sbjct: 203 RACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD------------------- 243

Query: 315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
                               GA+   K+ E K P+ +    +   A   L + GA + 
Sbjct: 244 -------------------FGADTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  150 bits (381), Expect = 1e-41
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 16/198 (8%)

Query: 359 DAVSLLVKHGADVNVIDNQ-----GQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP 413
              S LV  G+ +  +D +     G  P       G      L+ +    +A + +  +P
Sbjct: 9   HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR----LLSNPLMGDAVSDW--SP 62

Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           +H A    +  +L  L+  G  V+  T     PL+ A    +LS V+ LLK  A VN   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
               T L  A    +   +  LL + A +  +         +P+H A    +   +N L+
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-----DLASPIHEAARRGHVECVNSLI 177

Query: 534 DYNPDLDVKDKNGNTALH 551
            Y  ++D K  +  T L+
Sbjct: 178 AYGGNIDHKISHLGTPLY 195

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (336), Expect = 3e-35
 Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 15/206 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
             VN    + ++   +A +       K+L + GA +N     D  + L  A        V
Sbjct: 83  WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCV 141

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            LLL++   V    +   + +H  A+ +      V  L     N++ K     TPL++A 
Sbjct: 142 NLLLQHGASVQPESD-LASPIH-EAARRGHVEC-VNSLIAYGGNIDHKISHLGTPLYLAC 198

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
                  V+ L++ GA          + LH            +L+  GAD   +N  GK 
Sbjct: 199 ENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQ 199
             ++    ++  A     + G ++ +
Sbjct: 258 PVELVPP-ESPLAQLFLEREGASLPK 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  210 bits (536), Expect = 4e-64
 Identities = 81/346 (23%), Positives = 123/346 (35%), Gaps = 81/346 (23%)

Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVAVG--------ILLRK 160
             E +  L  A +  +  +V+ L++ GA+   +    G+  LH AV         +LLR 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
           GAD  +    G T F +A                                         G
Sbjct: 62  GADPVLRKKNGATPFLLA--------------------------------------AIAG 83

Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHL 280
               +KL L KGA+V+  D    TA   A  +G +K ++FL   GA V+           
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL---------- 133

Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH-GANVN 339
                          R     +           L    ++        K LL   GA+VN
Sbjct: 134 ---------------RRKTKEDQERLRKGGATALMDAAEKGHVEVL--KILLDEMGADVN 176

Query: 340 VKDDENKTPLHIAI----ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
             D+  +  L  A+    +S       LL+ HGADVNV   +G+ PL +AV+  ++ +  
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 396 --LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
             L +    +N  +   KT L +AVE K       L + GA  D  
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  201 bits (515), Expect = 6e-61
 Identities = 84/320 (26%), Positives = 128/320 (40%), Gaps = 61/320 (19%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDS--LQFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
              L  AV++  + +V+ LL+ GA V+    +   +PLH A++     IV+LLLR     
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR----- 60

Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
                                            HGA+  ++     TP  +A  +     
Sbjct: 61  ---------------------------------HGADPVLRKKNGATPFLLAAIAGSVKL 87

Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA--------- 410
           + L +  GADVN  D  G      A   G V     L + GANVN R K           
Sbjct: 88  LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147

Query: 411 -KTPLHIAVEQKNMSALNYLLEH-GAQVDARTQLGKDPLYIAVEM----HNLSIVEQLLK 464
             T L  A E+ ++  L  LL+  GA V+A   +G++ L  A+         +I   LL 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVES 523
             A+VN   + G+T L LAV+ +++ +++ LL  +  +IN         G T L LAVE 
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS----DGKTALLLAVEL 263

Query: 524 NNEAVINKLLDYNPDLDVKD 543
             + +   L       D  D
Sbjct: 264 KLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  198 bits (505), Expect = 2e-59
 Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 24/257 (9%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADV 371
            L   VQ +  +    + LL  GANVN +++E   TPLH A++    D V LL++HGAD 
Sbjct: 8   LLIKAVQNEDVDLV--QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL 430
            +    G  P  +A   G V +    +  GA+VN  + Y  T    A     + AL +L 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 431 EHGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTV 479
           + GA V+ R +  +D           L  A E  ++ +++ LL +  A+VN+ D  GR  
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 480 LHLAVKIQNV----AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD- 534
           L  A+   +     AI   LL + AD+N +      +G TPL LAVE  +  ++ +LL+ 
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGE----RGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 535 YNPDLDVKDKNGNTALH 551
            + +++  D +G TAL 
Sbjct: 242 EHIEINDTDSDGKTALL 258

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  192 bits (491), Expect = 2e-57
 Identities = 81/369 (21%), Positives = 140/369 (37%), Gaps = 95/369 (25%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN-LGNTVLHTVASIKTRDPTAVEILKTN 102
           +    L  A     + LV+ LLE   +VN  +   G T LH    +   D   VE+L  +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED--IVELLLRH 61

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGA 162
            A+  ++ K G TP  +AA  G+ K++++ +                           GA
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-------------------------GA 96

Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ 222
           D+N  + +G TAF  A                                         G  
Sbjct: 97  DVNECDFYGFTAFMEA--------------------------------------AVYGKV 118

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAI 282
            A+K + ++GANV+ + +               +  E L   G          + L  A 
Sbjct: 119 KALKFLYKRGANVNLRRK-------------TKEDQERLRKGG---------ATALMDAA 156

Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTT--MFKTLLYHGANVNV 340
           EK H+ ++++LL  +    ++N      +  L   +     +    +   LL HGA+VNV
Sbjct: 157 EKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 341 KDDENKTPLHIAIESQCWDAVS-LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
           + +  KTPL +A+E +    V  LL +   ++N  D+ G+  L +AV+     I   L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 399 HGANVNARN 407
            GA+ +  +
Sbjct: 275 RGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  185 bits (473), Expect = 8e-55
 Identities = 84/375 (22%), Positives = 129/375 (34%), Gaps = 99/375 (26%)

Query: 9   NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEY 67
             E   L  +A+ +    + + L E GAN+N    + G + LH A   +   +V LLL +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 68  NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
             D       G T    +A+I       +++  +  A+VN  +  G T    AA  G  K
Sbjct: 62  GADPVLRKKNGATPFL-LAAIAGSVKL-LKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 128 MVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAI 187
            ++ L   GA+   +                +   D       G TA   A         
Sbjct: 120 ALKFLYKRGANVNLRR---------------KTKEDQERLRKGGATALMDA--------- 155

Query: 188 ELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK-LILEKGANVHAKDQLCKTAL 246
                                           GH   +K L+ E GA+V+A D + + AL
Sbjct: 156 -----------------------------AEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 247 DIAVEHGHLK----IVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
             A+          I   LLDHGA V+   +   +PL LA+EK+H+ +VQ LL +     
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----- 241

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                               +N  D + KT L +A+E +     
Sbjct: 242 --------------------------------EHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 362 SLLVKHGADVNVIDN 376
            LL K GA  +  D 
Sbjct: 270 ELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  170 bits (434), Expect = 3e-49
 Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPN-LIRH 399
             E+   L  A++++  D V  L++ GA+VN  + + G  PLH AVQ     I   L+RH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           GA+   R K   TP  +A    ++  L   L  GA V+     G      A     +  +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 460 EQLLKFKANVNSSDQ----------FGRTVLHLAVKIQNVAILECLLVNK-ADINAKIIS 508
           + L K  ANVN   +           G T L  A +  +V +L+ LL    AD+NA    
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN- 180

Query: 509 GIWKGYTPLHLAVESNN----EAVINKLLDYNPDLDVKDKNGNTALH 551
               G   L  A+ S++    EA+ + LLD+  D++V+ + G T L 
Sbjct: 181 ---MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  164 bits (419), Expect = 5e-47
 Identities = 78/295 (26%), Positives = 116/295 (39%), Gaps = 71/295 (24%)

Query: 3   ADVNATNKE-GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
           A+VN   +E G T    A+  S+  I +LL   GA+         +G +   +AA    +
Sbjct: 29  ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGATPFLLAAIAGSV 85

Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK------- 111
           +L++L L    DVN  D  G T     A++  +    ++ L    ANVN++ K       
Sbjct: 86  KLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKA-LKFLYKRGANVNLRRKTKEDQER 143

Query: 112 ---EGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVA------------VG 155
               G T L  AA  G+ +++++L+D  GA     ++ G NAL  A              
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
           +LL  GAD+NV    GKT   +A                                     
Sbjct: 204 LLLDHGADVNVRGERGKTPLILA------------------------------------- 226

Query: 216 LVRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
            V   H   V+ +LE+    ++  D   KTAL +AVE    KI E L   GA  D
Sbjct: 227 -VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (313), Expect = 3e-32
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 24/190 (12%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN---------DPFPDDGKSCLHIA 53
           ADVN  +  G T F +A V  +    K L +RGAN+N         +     G + L  A
Sbjct: 96  ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 54  ATKN-IRLVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNI 108
           A K  + ++++LL E   DVNA DN+G   L   A + + D        +L  + A+VN+
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVA--------VGILLR 159
           + + G TPL +A    +  +V+ L++         +  G  AL +A          +L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 160 KGADINVENN 169
           +GA  +  + 
Sbjct: 275 RGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.7 bits (247), Expect = 3e-23
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATKN--- 57
             D     K G T    A       + K LL E GA++N    + G++ L  A   +   
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDS 196

Query: 58  --IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDT 115
               +  LLL++  DVN     G T L  +A  K        +L+     +N  + +G T
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKN 143
            L +A      K+  +L   GA T+C +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
           ADVN   + G T    A+      + + LL +    IN  D    DGK+ L +A      
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD---SDGKTALLLAVELKLK 266

Query: 59  RLVRLLLEYNVDVNAVDNL 77
           ++  LL +     +  D +
Sbjct: 267 KIAELLCKRGASTDCGDLV 285

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  208 bits (532), Expect = 1e-63
 Identities = 62/362 (17%), Positives = 112/362 (30%), Gaps = 85/362 (23%)

Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADIN 165
                ++GDT LH+A    +   +  L+   A                          ++
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSA----------------------GHEYLD 39

Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
           ++N+ G+TA  +A                                         G  + V
Sbjct: 40  LQNDLGQTALHLA--------------------------------------AILGEASTV 61

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ 285
           + +   GA V   ++   TAL +A           LL                       
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA------------- 108

Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
                           + +    T+ AP  +  Q    N             +  ++ + 
Sbjct: 109 ---------SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE-PRDEDWRLQLEAENYDG 158

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
            TPLH+A+  +  + V LL   GAD+N  +   G+ PLH+AV+    ++   L++ GA+ 
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
            AR    +TPL  A+ + N      L  HGA           P   +    +    ++  
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

Query: 464 KF 465
           ++
Sbjct: 279 EY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  197 bits (504), Expect = 2e-59
 Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 22/275 (8%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
            LHLA+  QH   +  LL  +  +  ++ +    +  LHL       +T   + L   GA
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV--EKLYAAGA 69

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP--------------L 382
            V V +    T LH+A   +      +L++         +   +                
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 383 HIAVQNGY-VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
             +  N      P        + A N    TPLH+AV  K+   +  L + GA ++    
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 442 -LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
             G+ PL++AVE    S++E LLK  A+  +    GRT L  A+   N  +   L  + A
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
                         +P   +   ++    ++  +Y
Sbjct: 250 PEPEDGG----DKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  196 bits (500), Expect = 8e-59
 Identities = 63/332 (18%), Positives = 103/332 (31%), Gaps = 77/332 (23%)

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN---VNIKNKEGDTPLHIAARTGNYK 127
              V   G+T LH +A I   +P  ++ L    A    ++++N  G T LH+AA  G   
Sbjct: 2   FGYVTEDGDTALH-LAVIHQHEPF-LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAY 179
            V  L   GA        G+ ALH+A          +LL+       + +          
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239
                                             +    N          +    + A++
Sbjct: 120 TPDTS------------------------HAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRN 297
               T L +AV H   ++V  L D GA ++  +     +PLHLA+E Q  ++++LLL+  
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-- 213

Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
                                                GA+   +    +TPL  A+    
Sbjct: 214 ------------------------------------AGADPTARMYGGRTPLGSALLRPN 237

Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
                LL  HGA           P   +  + 
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  189 bits (483), Expect = 2e-56
 Identities = 58/258 (22%), Positives = 96/258 (37%), Gaps = 25/258 (9%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGAN---VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
            LHL V  +         LL   A    +++++D  +T LH+A        V  L   GA
Sbjct: 12  ALHLAVIHQHEPFL--DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN-------------KYAKTPLH 415
            V V +  G   LH+A +         L++   +                    +  P  
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 416 IAVEQKNMS-ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ 474
           +  +    +       +   Q++A    G  PL++AV   +  +V  L    A++N  + 
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 475 -FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
             GRT LHLAV+ Q  ++LE LL   AD  A++      G TPL  A+   N  +   L 
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----GGRTPLGSALLRPNPILARLLR 245

Query: 534 DYNPDLDVKDKNGNTALH 551
            +         +  +   
Sbjct: 246 AHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  133 bits (337), Expect = 2e-35
 Identities = 41/286 (14%), Positives = 69/286 (24%), Gaps = 96/286 (33%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           A V    + G            T                        LH+A         
Sbjct: 69  AGVLVAERGG-----------HTA-----------------------LHLACRVRAHTCA 94

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA------------VEILKTNRANVNIK 109
            +LL+         +          +  T    A                +  R  +  +
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRK 160
           N +G TPLH+A    + +MVR+L D GA         G   LH+A        + +LL+ 
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRN 219
           GAD       G+T                                        L   +  
Sbjct: 215 GADPTARMYGGRTP---------------------------------------LGSALLR 235

Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
            +    +L+   GA          +    +         +   ++ 
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (292), Expect = 3e-29
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)

Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGA---QVDARTQLGKDPLYIAVEMHNLSIV 459
                +   T LH+AV  ++   L++LL   A    +D +  LG+  L++A  +   S V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI--------- 510
           E+L    A V  +++ G T LHLA +++       LL  +                    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 511 WKGYTPLHLAVESNNEAVINKLL-DYNPDLDVKDKNGNTALH 551
              + P  +  + N E        D+   L+ ++ +G+T LH
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 79.9 bits (198), Expect = 8e-17
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN---VNSSDQFGRTVLHLAVKIQNVAIL 492
               T+ G   L++AV   +   ++ LL F A    ++  +  G+T LHLA  +   + +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552
           E L    A +          G+T LHLA           LL   P       +       
Sbjct: 62  EKLYAAGAGVLVAER----GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  208 bits (533), Expect = 2e-63
 Identities = 64/315 (20%), Positives = 102/315 (32%), Gaps = 18/315 (5%)

Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLL 294
           +   D   K    +    G    +E  +             +    A        V  LL
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 295 RRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIE 354
                  +IN         LH        N  M K L+ +GAN+N  D+E   PLH A  
Sbjct: 61  ---ERGADINYANVDGLTALHQACIDD--NVDMVKFLVENGANINQPDNEGWIPLHAAAS 115

Query: 355 SQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI--RHGANVNARNKYAKT 412
               D    L+  GA V  ++++G  PL IA +     +      R G ++ A  K  + 
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 413 PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSS 472
            +     Q       +L           + G   L++A       +++ L++ + +VN  
Sbjct: 176 IMLRDARQ-------WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228

Query: 473 DQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
           D  G T LH A           L+ N  D+ A        G T   +A E     +    
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK----VGQTAFDVADEDILGYLEELQ 284

Query: 533 LDYNPDLDVKDKNGN 547
              N     K +  +
Sbjct: 285 KKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  208 bits (532), Expect = 3e-63
 Identities = 70/379 (18%), Positives = 117/379 (30%), Gaps = 93/379 (24%)

Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGILL 158
           + + + +      +    G+   +   +     T+ K   G   L          V  LL
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
            +GADIN  N  G TA                                       LH   
Sbjct: 61  ERGADINYANVDGLTA---------------------------------------LHQAC 81

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
            + + + VK ++E GAN++  D      L  A   G+L I E+L+  GA V ++     +
Sbjct: 82  IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
           PL +A E+    ++Q  + R   +I                                   
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIE---------------------------------- 167

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
                                 DA   L     +       G   LH+A   GY  +   
Sbjct: 168 ----------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           LI+   +VN ++    TPLH A       A   L+E+   ++A  ++G+    +A E   
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 456 LSIVEQLLKFKANVNSSDQ 474
             + E   K     +   +
Sbjct: 278 GYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  200 bits (510), Expect = 5e-60
 Identities = 61/345 (17%), Positives = 119/345 (34%), Gaps = 54/345 (15%)

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLVRNGHQ 222
           + + +   K   Q+   + +   +E  +              VK   G + L    +G  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT-------KVKFDDGAVFLAACSSGDT 53

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
             V  +LE+GA+++  +    TAL  A    ++ +V+FL+++GA ++        PLH A
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113

Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
               ++ I + L+                                        GA+V   
Sbjct: 114 ASCGYLDIAEYLIS--------------------------------------QGAHVGAV 135

Query: 342 DDENKTPLHIAIESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHG 400
           + E  TPL IA E    + +   V + G D+     + +  +    +        L    
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ------WLNSGH 189

Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
            N     K   T LH+A  +     L  L++    V+ +   G  PL+ A          
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            L++   ++ + ++ G+T   +A +     + E         + K
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  181 bits (462), Expect = 4e-53
 Identities = 55/345 (15%), Positives = 107/345 (31%), Gaps = 66/345 (19%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
             K    +         +   +          + G   L   A         V  L    
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA--ACSSGDTEE-VLRLLERG 63

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
           A++N  N +G T LH A    N  MV+ L+++GA+    +++G+  LH A          
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFL-KYGVNVEQCVCHENVKHGGQLLL 214
            L+ +GA +   N+ G T   +A E      ++  + + GV++E                
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------------R 170

Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-Q 272
               R   ++A + +     N     +   TAL +A   G+ ++++ L+     V+    
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 273 FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL 332
              +PLH A         ++L+                                      
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVE------------------------------------- 253

Query: 333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ 377
            +  ++   +   +T   +A E        L  K     +    +
Sbjct: 254 -NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  176 bits (448), Expect = 4e-51
 Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 20/253 (7%)

Query: 303 INTKGPTNKAPLHLVVQRKSWN--TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
           +       K    L    K W    T  +  +       VK D+       A  S   + 
Sbjct: 1   MKMADAKQKRNEQL----KRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEE 55

Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
           V  L++ GAD+N  +  G   LH A  +  V +   L+ +GAN+N  +     PLH A  
Sbjct: 56  VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115

Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRT 478
              +    YL+  GA V A    G  PL IA E     +++  + +   ++ ++ +    
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538
           ++    +       + L     +      SG     T LH+A       V+  L+    D
Sbjct: 176 IMLRDAR-------QWLNSGHINDVRHAKSG----GTALHVAAAKGYTEVLKLLIQARYD 224

Query: 539 LDVKDKNGNTALH 551
           +++KD +G T LH
Sbjct: 225 VNIKDYDGWTPLH 237

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  146 bits (371), Expect = 4e-40
 Identities = 56/276 (20%), Positives = 99/276 (35%), Gaps = 62/276 (22%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           AD+N  N +G+T   QA +     + K L E GANIN  D   ++G   LH AA+   + 
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD---NEGWIPLHAAASCGYLD 120

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +   L+     V AV++ G+T L         +   ++        VN +  + +     
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE--LLQNE------VNRQGVDIEAARKE 172

Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
             R       + L     +       G  ALHVA        + +L++   D+N+++  G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILE 230
            T                                        LH     G + A ++++E
Sbjct: 233 WTP---------------------------------------LHAAAHWGKEEACRILVE 253

Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
              ++ A +++ +TA D+A E     + E       
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  193 bits (494), Expect = 2e-58
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 8/241 (3%)

Query: 300 NININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
           ++N   +    ++PLH   +    +      L+  GAN++   ++ +TPL  A E+   +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDIC--HMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58

Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
           AV  L+K GA V+  D +G   LH+A + G+  +   L+ +G  +VN ++    TP+  A
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
            E K++  +  LL  G+ ++ R       L+ A     + I E LL  K ++++ +  G 
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           + LH+A +      +   L   +D+  K      +G TPL  A  ++      ++     
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNK----EGETPLQCASLNSQVWSALQMSKALQ 234

Query: 538 D 538
           D
Sbjct: 235 D 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  193 bits (494), Expect = 2e-58
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 6/218 (2%)

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
            N  ++    ++PLH A E+   D   +LV+ GA+++      + PL  A +N ++    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEM 453
            LI+ GA V+ ++    T LH+A ++ +   + YLL +G   V+ +   G  P+  A E 
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
            ++ +V+ LL   +++N  D      LH A     V I E LL  K D++A  I     G
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI----HG 177

Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            +PLH+A   N    +   L  + D+ +K+K G T L 
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  184 bits (471), Expect = 3e-55
 Identities = 64/272 (23%), Positives = 103/272 (37%), Gaps = 41/272 (15%)

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQ 291
            N   + Q  ++ L  A E GH+ I   L+  GA +D+  +   +PL  A E  H+  V+
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
            L++                                       GA V+ KD E  T LH+
Sbjct: 62  YLIK--------------------------------------AGALVDPKDAEGSTCLHL 83

Query: 352 AIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
           A +   ++ V  L+ +G  DVN  D+ G  P+  A +  +V +   L+  G+++N R+  
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
               LH A     +     LL     + A    G  PL+IA   +    V   L   ++V
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
              ++ G T L  A     V     +     D
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  173 bits (442), Expect = 7e-51
 Identities = 62/313 (19%), Positives = 105/313 (33%), Gaps = 88/313 (28%)

Query: 68  NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
           +++         + LH  A+          +L    AN++  +++  TPL  AA   + +
Sbjct: 1   HMNFKMEHQNKRSPLH-AAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58

Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA-DINVENNFGKTAFQMA 178
            V+ LI  GA  + K+ +G   LH+A        V  LL  G  D+N +++ G T    A
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 179 YEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAK 238
                                                     H + VKL+L KG++++ +
Sbjct: 119 --------------------------------------TEYKHVDLVKLLLSKGSDINIR 140

Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRN 297
           D      L  A   G + I E LL     + ++     SPLH+A  +     V L L   
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-- 198

Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
                                                 ++V +K+ E +TPL  A  +  
Sbjct: 199 ------------------------------------RDSDVTLKNKEGETPLQCASLNSQ 222

Query: 358 WDAVSLLVKHGAD 370
             +   + K   D
Sbjct: 223 VWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  163 bits (415), Expect = 5e-47
 Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 51/274 (18%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            +    ++   +    A  +    I  +L + GANI+    +D ++ L  AA  N +  V
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAV 60

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           + L++    V+  D  G+T LH +A+ K        +L   + +VN ++  G TP+  A 
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLH-LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
              +  +V++L+  G+    ++++    LH A          ILL    D++  N  G +
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
                                                   LH+  R    + V L L + 
Sbjct: 180 P---------------------------------------LHIAARENRYDCVVLFLSRD 200

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           ++V  K++  +T L  A  +  +     +     
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (361), Expect = 2e-39
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           A+++  +++  T   +A  ++     K L + GA ++     +G +CLH+AA K    +V
Sbjct: 35  ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVV 93

Query: 62  RLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
           + LL    +DVN  D+ G T +   A+        V++L +  +++NI++ E +  LH A
Sbjct: 94  QYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVDL-VKLLLSKGSDINIRDNEENICLHWA 151

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
           A +G   +  +L+         N  G + LH+A        V + L + +D+ ++N  G+
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211

Query: 173 TAFQMAYEMKNFPAIELFLKYGVN 196
           T  Q A       +     K   +
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQD 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  193 bits (492), Expect = 4e-58
 Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 18/252 (7%)

Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMF-----------KTLLYHGANV-NVKDDENKTP 348
           +++N +GP    PL +         T                +Y GA++ N  D   +T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 349 LHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNAR 406
           LH+A      DA   L++  AD N+ DN G+ PLH AV      +   LIR+ A +++AR
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
                TPL +A        L  L+   A V+A   LGK  L+ A  ++N+     LLK  
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
           AN +  +    T L LA +  +    + LL + A+ +            P  +A E  + 
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHH 236

Query: 527 AVINKLLDYNPD 538
            ++  L   +  
Sbjct: 237 DIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  186 bits (476), Expect = 1e-55
 Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 27/275 (9%)

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLL 293
           +V+ +     T L IA   G                         +   E+   A++   
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGL-------------------ETGNSEEEEDAPAVISDF 42

Query: 294 LRRNNNNINI-NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
           +       ++ N    T +  LHL  +    +    K LL   A+ N++D+  +TPLH A
Sbjct: 43  I---YQGASLHNQTDRTGETALHLAARYSRSDAA--KRLLEASADANIQDNMGRTPLHAA 97

Query: 353 IESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
           + +       +L+++ A D++   + G  PL +A +     +   LI   A+VNA +   
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           K+ LH A    N+ A   LL++GA  D +    + PL++A    +    + LL   AN +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            +D   R    +A +  +  I+  L +     +  
Sbjct: 218 ITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  186 bits (475), Expect = 2e-55
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 20/231 (8%)

Query: 337 NVNVKDDENKTPLHIA-------------IESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
           +VNV+  +  TPL IA              E      +S  +  GA + N  D  G+  L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDART 440
           H+A +         L+   A+ N ++   +TPLH AV          L+ + A  +DAR 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
             G  PL +A  +    ++E L+   A+VN+ D  G++ LH A  + NV     LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           + + +      +  TPL LA    +      LLD+  + D+ D        
Sbjct: 182 NKDMQNN----REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  181 bits (462), Expect = 1e-53
 Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 61/308 (19%)

Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI 164
           +VN++  +G TPL IA+ +G         +                   +   + +GA +
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAV------------ISDFIYQGASL 49

Query: 165 -NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
            N  +  G+TA                                       LHL  R    
Sbjct: 50  HNQTDRTGETA---------------------------------------LHLAARYSRS 70

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHL 280
           +A K +LE  A+ + +D + +T L  AV      + + L+ + A     +     +PL L
Sbjct: 71  DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130

Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV 340
           A       +++ L+   N++ ++N      K+ LH      + +      LL +GAN ++
Sbjct: 131 AARLAVEGMLEDLI---NSHADVNAVDDLGKSALHWAAAVNNVDAA--VVLLKNGANKDM 185

Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
           +++  +TPL +A     ++   +L+ H A+ ++ D+  ++P  IA +  +  I   L   
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

Query: 400 GANVNARN 407
             + +  +
Sbjct: 246 HHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  169 bits (430), Expect = 5e-49
 Identities = 69/287 (24%), Positives = 107/287 (37%), Gaps = 65/287 (22%)

Query: 4   DVNATNKEGIT-------------LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCL 50
           DVN    +G T                         +      +GA++++     G++ L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 51  HIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNI 108
           H+AA  +     + LLE + D N  DN+G T LH   S   +     +IL  NRA +++ 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG--VFQILIRNRATDLDA 119

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
           +  +G TPL +AAR     M+  LI+  A     +  G +ALH A          +LL+ 
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRN 219
           GA+ +++NN  +T                                        L L  R 
Sbjct: 180 GANKDMQNNREETP---------------------------------------LFLAARE 200

Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           G     K++L+  AN    D + +   DIA E  H  IV  L     
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  168 bits (427), Expect = 2e-48
 Identities = 68/327 (20%), Positives = 108/327 (33%), Gaps = 100/327 (30%)

Query: 69  VDVNAVDNLGNTVLHTVASIKTRDPTA------------VEILKTNRANV-NIKNKEGDT 115
           +DVN     G T L  +AS                    +       A++ N  ++ G+T
Sbjct: 1   MDVNVRGPDGFTPLM-IASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGA-DINV 166
            LH+AAR       + L++  A    +++ G   LH AV         IL+R  A D++ 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAV 225
             + G T                                        L L  R   +  +
Sbjct: 120 RMHDGTTP---------------------------------------LILAARLAVEGML 140

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ 285
           + ++   A+V+A D L K+AL  A    ++     LL +GA                   
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA------------------- 181

Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
                           N + +    + PL L  +  S+ T   K LL H AN ++ D  +
Sbjct: 182 ----------------NKDMQNNREETPLFLAAREGSYETA--KVLLDHFANRDITDHMD 223

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVN 372
           + P  IA E    D V LL       +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  124 bits (313), Expect = 2e-32
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           AD N  +  G T    A+ +    + ++L    A   D    DG + L +AA      ++
Sbjct: 81  ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             L+  + DVNAVD+LG + LH  A++   D  A  +L  N AN +++N   +TPL +AA
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVD--AAVVLLKNGANKDMQNNREETPLFLAA 198

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN 168
           R G+Y+  +VL+DH A+ +  +H       +A        V +L  +    +  +
Sbjct: 199 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  191 bits (489), Expect = 5e-58
 Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 14/226 (6%)

Query: 329 KTLLYHGANV-NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
              +Y GA++ N  D   +T LH+A      DA   L++  AD N+ DN G+ PLH AV 
Sbjct: 8   SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67

Query: 388 NGYVAIPN-LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
                +   LIR+ A +++AR     TPL +A        L  L+   A V+A   LGK 
Sbjct: 68  ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            L+ A  ++N+     LLK  AN +  +    T L LA +  +    + LL + A+ +  
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187

Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                     P  +A E  +  ++  L +YN          +  LH
Sbjct: 188 DH----MDRLPRDIAQERMHHDIVRLLDEYN-------LVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  185 bits (472), Expect = 2e-55
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 220 GHQNAVKLILEKGANVH-AKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSP 277
                +   + +GA++H   D+  +TAL +A  +      + LL+  A  +       +P
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
           LH A+      + Q+L+R  N   +++ +      PL L  +         + L+   A+
Sbjct: 62  LHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGML--EDLINSHAD 117

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
           VN  DD  K+ LH A      DA  +L+K+GA+ ++ +N+ + PL +A + G       L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
           + H AN +  +   + P  IA E+ +   +  L E+    
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  174 bits (444), Expect = 2e-51
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 42/258 (16%)

Query: 253 GHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN 310
               ++   +  GA + +       + LHLA         + LL                
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--------------- 46

Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA- 369
                                    A+ N++D+  +TPLH A+ +       +L+++ A 
Sbjct: 47  -----------------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83

Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
           D++   + G  PL +A +     +   LI   A+VNA +   K+ LH A    N+ A   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           LL++GA  D +    + PL++A    +    + LL   AN + +D   R    +A +  +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203

Query: 489 VAILECLLVNKADINAKI 506
             I+  L       + ++
Sbjct: 204 HDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  167 bits (427), Expect = 6e-49
 Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 52/251 (20%)

Query: 27  IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
           +      +GA++++     G++ LH+AA  +     + LLE + D N  DN+G T LH  
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 86  ASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
            S   +     +IL  NRA +++ +  +G TPL +AAR     M+  LI+  A     + 
Sbjct: 66  VSADAQG--VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123

Query: 145 QGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
            G +ALH A          +LL+ GA+ +++NN  +T                       
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP---------------------- 161

Query: 197 VEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL 255
                            L L  R G     K++L+  AN    D + +   DIA E  H 
Sbjct: 162 -----------------LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204

Query: 256 KIVEFLLDHGA 266
            IV  L ++  
Sbjct: 205 DIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (312), Expect = 1e-32
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           AD N  +  G T    A+ +    + ++L    A   D    DG + L +AA      ++
Sbjct: 49  ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             L+  + DVNAVD+LG + LH  A++   D  A  +L  N AN +++N   +TPL +AA
Sbjct: 109 EDLINSHADVNAVDDLGKSALHWAAAVNNVD--AAVVLLKNGANKDMQNNREETPLFLAA 166

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
           R G+Y+  +VL+DH A+ +  +H       +A        V +L       +
Sbjct: 167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  190 bits (485), Expect = 4e-57
 Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLV----KHGADVNVIDNQGQMPLHIAVQNGYVAI 393
               D++  TPLHIA+      AV  LV    + G ++++ +N  Q PLH+AV     ++
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ----VDARTQLGKDPLY 448
              L+  GA+  A +++ +T  H+A E ++ + L  LL+  A     ++AR   G   L+
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 449 IAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
           +AV       V+ LL+  A++++ D + GR+ L  AV+  ++++++ LL + A++NA++ 
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181

Query: 508 SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           SG     + LH A       ++  L+    D  +K+ + +T L 
Sbjct: 182 SG----SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  188 bits (480), Expect = 2e-56
 Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 44/265 (16%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
           PLH+A+ + ++  V  L+                                        G 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNL----------------------------------FQQGGR 37

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
            +++ ++  +TPLH+A+ +     V LLV  GA    +D  GQ   H+A ++        
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 396 LIRHGA----NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIA 450
           L+   A    ++ ARN    T LH+AV  +    +  LLE GA +DA   + G+ PL  A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157

Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
           VE ++LS+V+ LL+  ANVN+    G + LH A     + ++  L+ + AD + K     
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC--- 214

Query: 511 WKGYTPLHLAVESNNEAVINKLLDY 535
               TPL +A       ++      
Sbjct: 215 -HNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  179 bits (457), Expect = 5e-53
 Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 50/267 (18%)

Query: 214 LHL-VRNGHQNAVKLILE----KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
           LH+ V  G+  AV  ++      G  +   + L +T L +AV      +V  L+  GA  
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72

Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
            +L +   +  HLA E +    ++ LL                                 
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLD-------------------------------- 100

Query: 328 FKTLLYHGA----NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPL 382
                   A    ++  ++ +  T LH+A+ ++C + V LL++ GAD++ +D   G+ PL
Sbjct: 101 ------SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154

Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
             AV+N  +++   L++HGANVNA+     + LH A  +  +  +  L+  GA    +  
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214

Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKAN 468
               PL +A     + I+       A+
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  170 bits (433), Expect = 1e-49
 Identities = 73/316 (23%), Positives = 115/316 (36%), Gaps = 94/316 (29%)

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
               D  G+T LH +A ++   P     V + +     ++I N    TPLH+A  T    
Sbjct: 2   ATRADEDGDTPLH-IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA----DINVENNFGKTAF 175
           +VR+L+  GA     +  G  A H+A        +  LL   A    D+   N  G TA 
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV 235
            +A                                      V    Q  V+L+LE+GA++
Sbjct: 121 HVA--------------------------------------VNTECQETVQLLLERGADI 142

Query: 236 HAKD-QLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLL 293
            A D +  ++ L  AVE+  L +V+ LL HGA V++      S LH A  +  + +V+ L
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
           +R                                       GA+ ++K+  N TPL +A 
Sbjct: 203 VR--------------------------------------SGADSSLKNCHNDTPLMVAR 224

Query: 354 ESQCWDAVSLLVKHGA 369
             +  D +       A
Sbjct: 225 SRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  159 bits (405), Expect = 1e-45
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 65/283 (22%)

Query: 5   VNATNKEGITLFQQAIVSSQTPIAKLLAER----GANIN--DPFPDDGKSCLHIAATKN- 57
               +++G T    A+V    P    L       G  ++  +   +  ++ LH+A     
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN---NLRQTPLHLAVITTL 58

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA----NVNIKNKEG 113
             +VRLL+       A+D  G T  H +A         +  L  + A    ++  +N +G
Sbjct: 59  PSVVRLLVTAGASPMALDRHGQTAAH-LACEHRSPTC-LRALLDSAAPGTLDLEARNYDG 116

Query: 114 DTPLHIAARTGNYKMVRVLIDHGAHTECKNHQ-GYNALHVA--------VGILLRKGADI 164
            T LH+A  T   + V++L++ GA  +  + + G + L  A        V +LL+ GA++
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
           N +   G +A                                       LH     G   
Sbjct: 177 NAQMYSGSSA---------------------------------------LHSASGRGLLP 197

Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
            V+ ++  GA+   K+    T L +A     + I+       A
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  139 bits (354), Expect = 2e-38
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 21/210 (10%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
            +++  N    T    A++++   + +LL   GA+    D     G++  H+A       
Sbjct: 37  RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---RHGQTAAHLACEHRSPT 93

Query: 60  LVRLLLEY----NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGD 114
            +R LL+      +D+ A +  G T LH VA       T V++L    A+++  + K G 
Sbjct: 94  CLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQET-VQLLLERGADIDAVDIKSGR 151

Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINV 166
           +PL  A    +  MV++L+ HGA+   + + G +ALH A        V  L+R GAD ++
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
           +N    T   +A   +    +        +
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (287), Expect = 5e-29
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRL 60
             D+ A N +G+T    A+ +      +LL ERGA+I+      G+S L  A   N + +
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 61  VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
           V+LLL++  +VNA    G++ LH  AS +   P  V  L  + A+ ++KN   DTPL +A
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALH-SASGRGLLPL-VRTLVRSGADSSLKNCHNDTPLMVA 223

Query: 121 ARTGNYKMVRVLIDHGA 137
                  ++R      A
Sbjct: 224 RSRRVIDILRGKATRPA 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  189 bits (483), Expect = 7e-57
 Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
           ++   DD +   +  A +   ++    LV+ G DV   D +    LH A  N  + +   
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 396 LIRHGANVNAR-NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
            I  GA V+        TPLH A  Q ++S +  L+++GA        G   +++A +  
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120

Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAV-KIQNVAILECLLVNKADINAKIISGIWKG 513
           + SIV  L+    +V+  DQ G T L  A  +  +V     LL     +N       +  
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG---DKYHK 177

Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            T LH AV + N  VI+ LL+   ++D ++  G +AL 
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALD 215

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  188 bits (480), Expect = 2e-56
 Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 44/263 (16%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           +    + G     + ++E G +V   D+   T L  A  +  + +V++ +  GA VD L 
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 272 -QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
                +PLH A  + H+++V  L++                                   
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMK----------------------------------- 97

Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
              +GA+ ++ D E  + +H+A +      V+ L+  G DV+++D  G  PL  A    +
Sbjct: 98  ---YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 391 VAIP--NLIRHGANVNARNKYAK-TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
              P   L+    +VN  +KY K T LH AV   N + ++ LLE GA VDA+   G+  L
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 448 YIAVEMHNLSIVEQLLKFKANVN 470
            +A +  N+ ++  L + +    
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  186 bits (476), Expect = 9e-56
 Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 10/246 (4%)

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
           ++      +   +    Q   +     + L+  G +V   D EN T LH A  +   D V
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERC--RELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 362 SLLVKHGADVNVIDN-QGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
              +  GA V+ +       PLH A + G++++   L+++GA+ +  +    + +H+A +
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM-HNLSIVEQLLKFKANVNSSDQF-GR 477
             + S + YL+  G  VD   Q G  PL  A    H++     LL F  +VN  D++   
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178

Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           T LH AV   N  ++  LL   A+++A+ I    KG + L LA +  N  +IN L +   
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNI----KGESALDLAKQRKNVWMINHLQEARQ 234

Query: 538 DLDVKD 543
                +
Sbjct: 235 AKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  185 bits (473), Expect = 2e-55
 Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 43/277 (15%)

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
           ++   D      +  A ++G  +    L++ G  V    +   + LH A     I +V+ 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD-DENKTPLHI 351
            +                                        GA V+    D N TPLH 
Sbjct: 61  YIS--------------------------------------KGAIVDQLGGDLNSTPLHW 82

Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
           A        V  L+K+GAD ++ID +G   +H+A Q G+ +I   LI  G +V+  ++  
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 411 KTPLHIAVEQKN-MSALNYLLEHGAQVDARTQLGKD-PLYIAVEMHNLSIVEQLLKFKAN 468
            TPL  A  + + +     LL     V+   +  K+  L+ AV   N +++  LL+  AN
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           V++ +  G + L LA + +NV ++  L   +      
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  180 bits (460), Expect = 2e-53
 Identities = 61/316 (19%), Positives = 106/316 (33%), Gaps = 89/316 (28%)

Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGI 156
           ++   +      +  A + G Y+  R L++ G      + +    LH A        V  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 157 LLRKGADIN-VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
            + KGA ++ +  +   T    A                                     
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWA------------------------------------- 83

Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFI 274
             R GH + V  +++ GA+    D    + + +A + GH  IV +L+  G  VD + Q  
Sbjct: 84  -TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 275 HSPLHLAIEKQHIA-IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
            +PL  A  + H     +LLL                                       
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLT-------------------------------------- 164

Query: 334 HGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
              +VN+ D  +K T LH A+ +     +SLL++ GA+V+  + +G+  L +A Q   V 
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW 224

Query: 393 IPN-LIRHGANVNARN 407
           + N L          N
Sbjct: 225 MINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  172 bits (439), Expect = 2e-50
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 20/242 (8%)

Query: 37  NINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA 95
           ++     D     +  A         R L+E   DV   D    T+LH  A+I  R    
Sbjct: 1   HMTHI-DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLH-WAAINNRIDL- 57

Query: 96  VEILKTNRANVNIKNKE-GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153
           V+   +  A V+    +   TPLH A R G+  MV  L+ +GA     + +G + +H+A 
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117

Query: 154 -------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAI-ELFLKYGVNVEQCVCHEN 205
                  V  L+ KG D+++ +  G T    A    +      L L + V+V        
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN-----LG 172

Query: 206 VKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
            K+     LH  V  G+   + L+LE GANV A++   ++ALD+A +  ++ ++  L + 
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 265 GA 266
             
Sbjct: 233 RQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  143 bits (364), Expect = 9e-40
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            DV   +KE +TL   A ++++  + K    +GA ++    D   + LH A  +  + +V
Sbjct: 33  YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
             L++Y  D + +D  G + +H +A+        V  L     +V++ ++ G TPL  AA
Sbjct: 93  VQLMKYGADPSLIDGEGCSCIH-LAAQFGHTSI-VAYLIAKGQDVDMMDQNGMTPLMWAA 150

Query: 122 RTGNYK-MVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRKGADINVENNFG 171
              +     R+L+           +    ALH A        + +LL  GA+++ +N  G
Sbjct: 151 YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG 210

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVE 198
           ++A  +A + KN   I    +      
Sbjct: 211 ESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (271), Expect = 7e-27
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
           AD +  + EG +    A     T I   L  +G +++  D    +G + L  AA +   +
Sbjct: 100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD---QNGMTPLMWAAYRTHSV 156

Query: 61  --VRLLLEYNVDVNAVDNL-GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
              RLLL +NV VN  D    NT LH  A +   + T + +L    ANV+ +N +G++ L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALH-WAVLA-GNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 118 HIAARTGNYKMVRVLIDHGAHTECKN 143
            +A +  N  M+  L +        N
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKGYDN 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  190 bits (484), Expect = 2e-56
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 55/325 (16%)

Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF 273
           L  +       +K  L    +    D    +A   A+   ++++V  LL+ GA  +    
Sbjct: 4   LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-LE 61

Query: 274 IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
              PLH A   +   IV++LL                                       
Sbjct: 62  NEFPLHQAATLEDTKIVKILLF-------------------------------------- 83

Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM-PLHIAVQNGYVA 392
            G + +  DD+  T L+ A++S     V L VK    +      G     + AV    V+
Sbjct: 84  SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143

Query: 393 IPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP-LYIA 450
           I +  +    +         + +HI ++  ++  +  LL++    +    L   P + +A
Sbjct: 144 IVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202

Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
           ++  ++ +++ L K+  N+        +     V + +  I + ++    +  +   +  
Sbjct: 203 IDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK- 254

Query: 511 WKGYTPLHLAVESNNEAVINKLLDY 535
                 +    + +     NK L  
Sbjct: 255 ---DLDIVKNNKLDEIISKNKELRL 276

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  188 bits (479), Expect = 9e-56
 Identities = 41/275 (14%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 280 LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
             I       ++  L    ++ +         +  +  +   +       TLL  GA  N
Sbjct: 5   SRINTWKSKQLKSFL----SSKDTFKADVHGHSASYYAIADNNVRLV--CTLLNAGALKN 58

Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
           + +  N+ PLH A   +    V +L+  G D +  D++G   L+ AV +G +      ++
Sbjct: 59  LLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 399 HGANVNARNKY-AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457
               +    K   KT  + AV   ++S ++Y L                ++I ++  ++ 
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVD 175

Query: 458 IVEQLLKFKANVNSSDQFGRT-VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTP 516
           ++  LL +  + N+++       + LA+  +++ +L+ L     +I            + 
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-----------SA 224

Query: 517 LHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
               V  ++  +   +++ + +        +  + 
Sbjct: 225 NLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  178 bits (453), Expect = 6e-52
 Identities = 40/298 (13%), Positives = 90/298 (30%), Gaps = 29/298 (9%)

Query: 146 GYNALHVAVG-----ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQC 200
           G +   +               D    +  G +A   A    N   +   L  G      
Sbjct: 1   GMDLSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--- 57

Query: 201 VCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEF 260
               N+      L           VK++L  G +    D    TAL  AV+ G+++ V+ 
Sbjct: 58  ----NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113

Query: 261 LLDHGACVDSL--QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
            +     +         +  + A+    ++IV   L    +  ++     +    +H+ +
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLS---CIHITI 169

Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTP-LHIAIESQCWDAVSLLVKHGADVNVIDNQ 377
           +    +      LL +  + N  +     P + +AI+++  + +  L K+  ++      
Sbjct: 170 KNGHVDMM--ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS---- 223

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
                   V      I   +I       + +      +    +   + + N  L    
Sbjct: 224 ---ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  176 bits (450), Expect = 2e-51
 Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 63/335 (18%)

Query: 84  TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
            ++ I T     ++    +  +    +  G +  + A    N ++V  L++ GA      
Sbjct: 3   DLSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
                 LH A        V ILL  G D +  ++ G TA   A                 
Sbjct: 62  --NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA----------------- 102

Query: 196 NVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQL-CKTALDIAVEHGH 254
                                V +G+   VKL ++K   +    +   KT+   AV    
Sbjct: 103 ---------------------VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP- 313
           + IV + L        L  + S +H+ I+  H+ ++ LLL   +   + NT       P 
Sbjct: 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL---DYMTSTNTNNSLLFIPD 198

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           + L +  K       + L  +  N+        +     +     +   ++++   +   
Sbjct: 199 IKLAIDNKDIEML--QALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 374 IDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNK 408
                 + +    +   +   N       VN   K
Sbjct: 250 DSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  158 bits (403), Expect = 9e-45
 Identities = 47/312 (15%), Positives = 91/312 (29%), Gaps = 63/312 (20%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            D    +  G +    AI  +   +   L   GA  N     + +  LH AAT    ++V
Sbjct: 22  KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIV 78

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEG-DTPLHIA 120
           ++LL   +D +  D+ GNT L+  A       T V++       +    K G  T  + A
Sbjct: 79  KILLFSGLDDSQFDDKGNTALY-YAVDSGNMQT-VKLFVKKNWRLMFYGKTGWKTSFYHA 136

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
               +  +V   +     T        + +H+         + +LL      N  N+   
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195

Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
                                                    + L + N     ++ + + 
Sbjct: 196 IP--------------------------------------DIKLAIDNKDIEMLQALFKY 217

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIV 290
             N++       +A    V     +I + +++      S  +     +    +   I   
Sbjct: 218 DINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISK 270

Query: 291 QLLLRRNNNNIN 302
              LR    N  
Sbjct: 271 NKELRLMYVNCV 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  153 bits (390), Expect = 6e-43
 Identities = 45/355 (12%), Positives = 103/355 (29%), Gaps = 108/355 (30%)

Query: 12  GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYN 68
           G+ L    I + ++   K       +    D     G S  + A   N +RLV  LL   
Sbjct: 1   GMDL--SRINTWKSKQLKSFL-SSKDTFKAD---VHGHSASYYAIADNNVRLVCTLLNAG 54

Query: 69  VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM 128
              N ++N     LH  A+        V+IL  +  + +  + +G+T L+ A  +GN + 
Sbjct: 55  ALKNLLEN--EFPLH-QAATLEDTKI-VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110

Query: 129 VRVLIDHGAHTECKNHQGYN-ALHVA--------VGILLRKGADINVENNFGKTAFQMAY 179
           V++ +            G+  + + A        V   L +      +     +      
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSC----- 164

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAK 238
                                             +H+ ++NGH + + L+L+   + +  
Sbjct: 165 ----------------------------------IHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 239 DQLCKT-ALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRN 297
           + L     + +A+++  +++++ L  +         I+S     +      I ++++   
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDIN------IYSANLENVLLDDAEIAKMIIE-- 242

Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
                                                              +   
Sbjct: 243 ------------------------------------KHVEYKSDSYTKDLDIVKN 261

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  182 bits (465), Expect = 2e-54
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 14/224 (6%)

Query: 313 PLHLVVQRKSWNTTMF--KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
            LHL +  +    TM   + +    A +N +++  +TPLH+A+ +   +    L+  G D
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN------VNARNKYAKTPLHIAVEQKNM 423
             + D +G  PLH+A + G +A    L +          + A N    T LH+A     +
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 424 SALNYLLEHGAQVDARTQL-GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
             +  L+  GA V+A+    G+  L++AV++ N  +V  LLK  A+VN     G +   L
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
                +  I + L     +    +               ES   
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPE----SEDEESYDTESEFT 230

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  180 bits (459), Expect = 2e-53
 Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 16/223 (7%)

Query: 341 KDDENKTPLHIAIE----SQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
             ++  + LH+AI     +   + +  +    A +N  +N  Q PLH+AV      I   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA------QVDARTQLGKDPLYI 449
           L+  G +   R+    TPLH+A EQ  ++++  L +          + A    G   L++
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
           A     L IVE L+   A+VN+ +   GRT LHLAV +QN  ++  LL   AD+N     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 509 GIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           G    Y+P  L     +  +  +L     +             
Sbjct: 184 G----YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  169 bits (430), Expect = 3e-49
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)

Query: 210 GQLLLHL-VRNGHQNA----VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
           G   LHL + +  +      ++ +    A ++ ++ L +T L +AV     +I E LL  
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 265 GACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           G   +   F  ++PLHLA E+  +A V +L +                            
Sbjct: 68  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT------------------------ 103

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPL 382
                    +  + +   +    T LH+A        V LLV  GADVN  +   G+  L
Sbjct: 104 --------PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
           H+AV      + + L++ GA+VN       +P  +   + +      L +   +      
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 442 LGKDPLYIAVEMHNLSIVE 460
             +D      E       E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  159 bits (405), Expect = 1e-45
 Identities = 58/305 (19%), Positives = 101/305 (33%), Gaps = 98/305 (32%)

Query: 73  AVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
            +   G++ LH +A I          +  +K + A +N +N    TPLH+A  T   ++ 
Sbjct: 3   QLTEDGDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 130 RVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGAD------INVENNFGKTAF 175
             L+  G   E ++ +G   LH+A        VG+L +          +   N  G T  
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC- 120

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGAN 234
                                                 LHL   +G+   V+L++  GA+
Sbjct: 121 --------------------------------------LHLASIHGYLGIVELLVSLGAD 142

Query: 235 VHAKDQLC-KTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQL 292
           V+A++    +TAL +AV+  +  +V  LL  GA V+ + +  +SP  L   +    I Q 
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202

Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
           L +                                                E++      
Sbjct: 203 LGQ--------------------------------------LTLENLQMLPESEDEESYD 224

Query: 353 IESQC 357
            ES+ 
Sbjct: 225 TESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  136 bits (345), Expect = 3e-37
 Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 61/273 (22%)

Query: 7   ATNKEGITLFQQAIVSSQTP----IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
              ++G +    AI+  +      + + +    A +N    +  ++ LH+A   N   + 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIA 61

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN------VNIKNKEGDT 115
             LL    D    D  GNT LH +A  +    + V +L  +         +   N  G T
Sbjct: 62  EALLGAGCDPELRDFRGNTPLH-LACEQGCLAS-VGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRKGADINV 166
            LH+A+  G   +V +L+  GA    +    G  ALH+A        V +LL+ GAD+N 
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
               G + +Q+                                                +
Sbjct: 180 VTYQGYSPYQLT--------------------------------------WGRPSTRIQQ 201

Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
            + +            +       E    +  E
Sbjct: 202 QLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (314), Expect = 8e-33
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           A +N  N    T    A++++Q  IA+ L   G +    D     G + LH+A  +  + 
Sbjct: 36  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD---FRGNTPLHLACEQGCLA 92

Query: 60  LVRLLLEYNVD------VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKE 112
            V +L +          + A +  G+T LH +ASI       VE+L +  A+VN +    
Sbjct: 93  SVGVLTQSCTTPHLHSILKATNYNGHTCLH-LASIHGYLGI-VELLVSLGADVNAQEPCN 150

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADI 164
           G T LH+A    N  +V +L+  GA      +QGY+   +  G         L +   + 
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

Query: 165 NVENNFGKTAFQMAYE 180
                  +       E
Sbjct: 211 LQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN 57
           ADVN    +G + +Q       T I + L +         P + +          
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP-ESEDEESYDTESE 228

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  131 bits (331), Expect = 3e-35
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 34/204 (16%)

Query: 378 GQMPLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
            + PL +A +   V   +  L   G  V+ R    +T LHIA    N+ A   L+E   +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 436 V-----DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-------------QFGR 477
           +      +    G+  L+IAV   N+++V  LL   A+V++                +G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV----INKLL 533
             L  A  + +  I+  L+ + ADI A+       G T LH+ +   N+       N LL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDS----LGNTVLHILILQPNKTFACQMYNLLL 178

Query: 534 DYNPDLDVK------DKNGNTALH 551
            Y+    +K      +  G T   
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFK 202

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           + + PL +A + +++  + +LLKF+   V+     G T LH+A    N+     L+    
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 501 DINAKII-SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN-------------G 546
           ++  + + S +++G T LH+AV + N  ++  LL     +  +                G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 547 NTALH 551
              L 
Sbjct: 122 EHPLS 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  168 bits (427), Expect = 7e-49
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 13/220 (5%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
           PLH       +     + L    + +  KD + + PLH ++  Q  +  S L+    +VN
Sbjct: 5   PLHQACMENEFFKVQ-ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 373 V---IDNQGQMPLHIAVQNGYVAIPN-LIRH--GANVNARNKYAKTPLHIAVEQKNMSAL 426
           +    D+ G  P HIA   G + +   L       ++N       T LH+AV +K     
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVLHLAVK 485
            +L+E+GA V  + +  + PL+ A  + +L ++E L    K+ VN  D+ G T L  A+ 
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183

Query: 486 IQNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESN 524
             +      L+    A+ +        KG     +A+   
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDN----KGAKAEDVALNEQ 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  166 bits (423), Expect = 2e-48
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 13/216 (6%)

Query: 345 NKTPLHIAIES-QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN 402
           +  PLH A    + +    LL    + +   D  G++PLH +V      I + L+    N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 403 VNARN---KYAKTPLHIAVEQKNMSALNYLLEH--GAQVDARTQLGKDPLYIAVEMHNLS 457
           VN  +       TP HIA    N+  +  L +      ++  T  G   L++AV      
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL-VNKADINAKIISGIWKGYTP 516
           + + L++  A+V   D+F +  LH A  + ++ ++E L  + K+ +N +      +G+TP
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK----QGWTP 177

Query: 517 LHLAVESNNEAVINKLLD-YNPDLDVKDKNGNTALH 551
           L  A+   +      L++ Y  + D+ D  G  A  
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  166 bits (423), Expect = 3e-48
 Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 48/260 (18%)

Query: 214 LHL-VRNGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
           LH          V +L+  K + +  KDQ  +  L  +V     +I  FLL     V+  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

Query: 272 QFI----HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
            +      +P H+A    ++ +V+ L  R                               
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRP------------------------------ 95

Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
                    ++N   ++  T LH+A+  + ++    L+++GA V + D   Q+PLH A  
Sbjct: 96  ------LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

Query: 388 NGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGK 444
            G + +   L   G + VN ++K   TPL  A+ + +  A   L+E +GA+ D     G 
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209

Query: 445 DPLYIAVEMHNLSIVEQLLK 464
               +A+   N  + +  L 
Sbjct: 210 KAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  153 bits (390), Expect = 1e-43
 Identities = 50/306 (16%), Positives = 95/306 (31%), Gaps = 94/306 (30%)

Query: 77  LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
           + N  LH  A ++       E+L +  + +  K+++G  PLH +     +++   L+   
Sbjct: 1   MSNYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 137 A---HTECKNHQGYNALHVA--------VGILLRK--GADINVENNFGKTAFQMAYEMKN 183
                 +  +  G+   H+A        V  L  +    D+N   N G T   +A     
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----- 114

Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK 243
                                            V        + ++E GA+V  KD+  +
Sbjct: 115 ---------------------------------VGKKWFEVSQFLIENGASVRIKDKFNQ 141

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNI 301
             L  A   G LK++E L   G    + Q     +PL  A+ + H     LL+ +     
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----- 196

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                           +GA  ++ D++      +A+  Q     
Sbjct: 197 --------------------------------YGAEYDLVDNKGAKAEDVALNEQV---K 221

Query: 362 SLLVKH 367
              + +
Sbjct: 222 KFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (347), Expect = 2e-37
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 64/256 (25%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNA---VDNLGNT 80
           + +LL  + + +   D    DG+  LH + +     +   LL    +VN     D+ G T
Sbjct: 18  VQELLHSKPSLLLQKD---QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 74

Query: 81  VLHTVASIKTRDPTAVEIL--KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
             H   S+   +   V+ L  +  + ++N    +G T LH+A     +++ + LI++GA 
Sbjct: 75  PFHIACSVGNLE--VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132

Query: 139 TECKNHQGYNALHVA--------VGILLRKG-ADINVENNFGKTAFQMAYEMKNFPAIEL 189
              K+      LH A        + +L   G + +N ++  G T    A           
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA----------- 181

Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK-LILEKGANVHAKDQLCKTALDI 248
                                      +  GH +A   L+ + GA     D     A D+
Sbjct: 182 ---------------------------LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 249 AVEHGHLKIVEFLLDH 264
           A+   + ++ +F L++
Sbjct: 215 AL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.0 bits (227), Expect = 6e-21
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
            D+N    +G+T    A+      +++ L E GA++   D      +  LH AA+   ++
Sbjct: 98  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---KFNQIPLHRAASVGSLK 154

Query: 60  LVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
           L+ LL       VN  D  G T L   A  +     AV +++   A  ++ + +G     
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLF-HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213

Query: 119 IAARTGNYKMVRVLIDH 135
           +A    N ++ +  +++
Sbjct: 214 VAL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 90.2 bits (225), Expect = 9e-21
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 442 LGKDPLYIAVEM-HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           +   PL+ A        + E L    + +   DQ GR  LH +V  Q   I   LL    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLD--YNPDLDVKDKNGNTALH 551
           ++N         G+TP H+A    N  V+  L D    PDL+     G T LH
Sbjct: 61  NVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAER-GANIN--DPFPDDGKSCLHIAATKNI 58
            + VN  +K+G T    A+       A LL E+ GA  +  D   + G     +A  + +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD---NKGAKAEDVALNEQV 220

Query: 59  RLVRLLLE 66
              +  L 
Sbjct: 221 --KKFFLN 226

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  161 bits (410), Expect = 9e-47
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
           +K  E    L  A +        +L      V+ +D +G  PL+IAV N  + I   LI 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLS 457
            GA++N +N  + +P   A  Q     L Y+L+H    ++   + G + L  A E  ++ 
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 458 IVEQLLKF-KANVNSSDQFGRTVLHLAVKIQN-----VAILECLLVNKADINAKIISGIW 511
            V+ LL+  + +++  + FG T L  AV ++        I++ L+ N AD + K  S   
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS--- 177

Query: 512 KGYTPLHLAVESNNEAVINKLLDYN 536
            G T +  A +     +   L  YN
Sbjct: 178 -GRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  150 bits (381), Expect = 1e-42
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 46/232 (19%)

Query: 44  DDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
            +  + L  A  ++  ++  +L +    V+ VD  GNT L+ +A          + L   
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIEI-AKALIDR 61

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGYNALHVA-------- 153
            A++N++N   D+P   A   G  +++  ++ H        N  G NAL  A        
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121

Query: 154 VGILLRKG-ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
           V +LL  G  DI+ +N+FG TA   A  ++                              
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREG---------------------------- 153

Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
                   +Q+ VKL++E GA+   KD   +TA+D A + G+ +I + L  +
Sbjct: 154 -----NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  144 bits (366), Expect = 2e-40
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
            A L    QR +      + L      V+  D E  TPL+IA+ +   +    L+  GAD
Sbjct: 7   GALLEAANQRDTKKVK--EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64

Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNY 428
           +N+ ++    P   A   G   I   +++H   ++N  N+Y    L  A E+ ++  +  
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124

Query: 429 LLEHG-AQVDARTQLGKDPLYIAVEMHN-----LSIVEQLLKFKANVNSSDQFGRTVLHL 482
           LLE G   +D +   G   L  AV +         IV+ L++  A+ +  D  GRT +  
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

Query: 483 AVKIQNVAILECLL 496
           A +     I + L 
Sbjct: 185 ANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  143 bits (364), Expect = 3e-40
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 48/235 (20%)

Query: 208 HGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           +    LL    +   +   +++ +    V   D    T L+IAV +  ++I + L+D GA
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 267 CVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT 325
            ++       SP   A  +    I+  +L+                              
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLK------------------------------ 93

Query: 326 TMFKTLLYHGA-NVNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVNVIDNQGQMPLH 383
                   H   ++N  +      L  A E    D V LL++ G  D++  ++ G   L 
Sbjct: 94  --------HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145

Query: 384 IAV-----QNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
            AV        Y  I   L+ +GA+ + ++   +T +  A ++        L ++
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  135 bits (343), Expect = 3e-37
 Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 84/272 (30%)

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLR 159
           +K  E    L  A +    K+  +L D     +  + +G   L++A           L+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
           +GADIN++N+   + +  A                                         
Sbjct: 61  RGADINLQNSISDSPYLYA--------------------------------------GAQ 82

Query: 220 GHQNAVKLILEKGA-NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPL 278
           G    +  +L+    +++  ++    AL  A E GH+  V+ LL+ G             
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG------------- 129

Query: 279 HLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN---TTMFKTLLYHG 335
                                  +I+ +       L   V  +  N     + K L+ +G
Sbjct: 130 ---------------------REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
           A+ ++KD+  +T +  A +    +   +L ++
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  110 bits (277), Expect = 4e-28
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
           +       L  A ++        L +   QVD     G  PL IAV  +++ I + L+  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESN 524
            A++N  +    +    A       IL  +L +   D+N         G   L  A E  
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR----YGGNALIPAAEKG 117

Query: 525 NEAVINKLLDY-NPDLDVKDKNGNTALH 551
           +   +  LL+    D+D ++  G TAL 
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALI 145

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGA-NIN--DPFPDDGKSCLHIAATKN-I 58
           AD+N  N    + +  A    +T I   + +    ++N  +     G + L  AA K  I
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN---RYGGNALIPAAEKGHI 119

Query: 59  RLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPT---AVEILKTNRANVNIKNKEGD 114
             V+LLLE    D++  ++ G T L     ++  +      V++L  N A+ +IK+  G 
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR 179

Query: 115 TPLHIAARTGNYKMVRVLIDH 135
           T +  A + G  ++ ++L  +
Sbjct: 180 TAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 4e-21
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
               L  A +     + E L      V+  D  G T L++AV   ++ I + L+   ADI
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN-PDLDVKDKNGNTALHP 552
           N +         +P   A       ++  +L +  PDL+  ++ G  AL P
Sbjct: 66  NLQNS----ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTP-----IAKLLAERGANIN--DPFPDDGKSCLHIAA 54
             D++  N  G T   +A+   +       I KLL E GA+ +  D   + G++ +  A 
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD---NSGRTAMDYAN 186

Query: 55  TKN-IRLVRLLLEYN 68
            K    + ++L +YN
Sbjct: 187 QKGYTEISKILAQYN 201

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  161 bits (409), Expect = 2e-46
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405
           +  +  A+ +        L     D+  I +            G       +     V  
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT----GLIPSNYVAE 68

Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-K 464
           + +    PLH A ++ N+S L   L++   V+   + G   LY A    +  IVE L  +
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
               +N  ++ G T LH A       I++ LL   A  + + I    +      +A  + 
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI----EKKLAFDMATNAA 184

Query: 525 NEAVINKLLDYNPDLDVKDKNGNTALH 551
             +++ K    +    + +        
Sbjct: 185 CASLLKKKQGTDAVRTLSNAEDYLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  153 bits (388), Expect = 2e-43
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 12/211 (5%)

Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
              +  A+          L        +I      +              T+  +T L  
Sbjct: 13  QVKVFRALYTFEPRTPDELY---IEEGDIIYITDMSDTNWW-------KGTSKGRTGLIP 62

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
              V  + +    PLH A +      +   + +   VN +D  G   L+ A   G+  I 
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 395 N-LIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
             L       +N +NK   T LH A  +     +  LL  GA+ D R    K    +A  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
               S++++     A    S+         +
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (379), Expect = 4e-42
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 13/217 (5%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEKQHIAIVQLLLRRNNNNI 301
           +  +  A+     +  + L      +  +  +  +       K    ++         + 
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--------SN 64

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
            +  +  +   PLH   +R + +    +  L +   VN  D    T L+ A      D V
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWL--RECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 362 SLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
            +L      ++N  +  G   LH A   GY  I   L+  GA  + RN   K    +A  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
               S L       A               +   H+ 
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (379), Expect = 5e-42
 Identities = 38/290 (13%), Positives = 68/290 (23%), Gaps = 81/290 (27%)

Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG---ILLRKGAD 163
               K G   +  A  T   +    L                            L     
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQN 223
           +  +          A                                       + G+ +
Sbjct: 66  VAEQAESIDNPLHEA--------------------------------------AKRGNLS 87

Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH-GACVDSL-QFIHSPLHLA 281
            ++  L+    V+  D+   TAL  A   GH  IVE L       ++   +   + LH A
Sbjct: 88  WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
             K +  IVQLLL                                        GA  +++
Sbjct: 148 AWKGYADIVQLLLA--------------------------------------KGARTDLR 169

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV 391
           + E K    +A  + C   +       A   + + +  +    +    + 
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  142 bits (360), Expect = 2e-39
 Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 13/210 (6%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
            +   +      T     L     ++    D + T                 +     V 
Sbjct: 15  KVFRALYTFEPRTPDE--LYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA 67

Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
                   PLH A + G ++     + +   VN  +K   T L+ A    +   +  L  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 432 H-GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVA 490
               +++ + +LG   L+ A       IV+ LL   A  +  +   +    +A      +
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187

Query: 491 ILECLLVNKADINAKIISGIWKGYTPLHLA 520
           +L+      A           + Y     +
Sbjct: 188 LLKKKQGTDAVRTLSNA----EDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  138 bits (351), Expect = 4e-38
 Identities = 44/254 (17%), Positives = 77/254 (30%), Gaps = 58/254 (22%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
            G+  +  A      R    L     D+  + ++ +T      S                
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-------GRTGLIPS 63

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
             V  + +  D PLH AA+ GN   +R  +D+       +  G  AL+ A        V 
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 156 ILLRK-GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
           +L  +   ++N +N  G TA                                       L
Sbjct: 124 MLFTQPNIELNQQNKLGDTA---------------------------------------L 144

Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-Q 272
           H     G+ + V+L+L KGA    ++   K A D+A       +++      A       
Sbjct: 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204

Query: 273 FIHSPLHLAIEKQH 286
             +     +  + H
Sbjct: 205 EDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (334), Expect = 9e-36
 Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 11/179 (6%)

Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
              GQ+ +  A+       P+ L     ++      + T       +         L   
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPS 63

Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
             V  + +   +PL+ A +  NLS + + L  +  VN  D+ G T L+ A    +  I+E
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 494 CLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            L      ++N +       G T LH A       ++  LL      D+++     A  
Sbjct: 124 MLFTQPNIELNQQN----KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  129 bits (327), Expect = 8e-35
 Identities = 46/259 (17%), Positives = 72/259 (27%), Gaps = 54/259 (20%)

Query: 6   NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLL 65
               K G     +A+ + +      L     +I     D   +      +K     R  L
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYIT-DMSDTNWWKGTSKG----RTGL 60

Query: 66  EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN 125
             +  V       +  LH  A+ +      +     NR  VN  +K G T L+ A   G+
Sbjct: 61  IPSNYVAEQAESIDNPLH-EAAKRGNLSW-LRECLDNRVGVNGLDKAGSTALYWACHGGH 118

Query: 126 YKMVRVLIDH-GAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQ 176
             +V +L          +N  G  ALH A        V +LL KGA  ++ N   K AF 
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH 236
           MA                                            + +K      A   
Sbjct: 179 MA--------------------------------------TNAACASLLKKKQGTDAVRT 200

Query: 237 AKDQLCKTALDIAVEHGHL 255
             +       + +    H 
Sbjct: 201 LSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (288), Expect = 2e-29
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 16/185 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            D+        T + +     +T +                +   + LH AA +  +  +
Sbjct: 36  GDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA------ESIDNPLHEAAKRGNLSWL 89

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           R  L+  V VN +D  G+T L+  A           +       +N +NK GDT LH AA
Sbjct: 90  RECLDNRVGVNGLDKAGSTALY-WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
             G   +V++L+  GA T+ +N +   A  +A        +       A   + N     
Sbjct: 149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208

Query: 174 AFQMA 178
             + +
Sbjct: 209 DDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  107 bits (269), Expect = 1e-26
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 9/157 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
             V    +       +A         +   +    +N  D     G + L+ A       
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD---KAGSTALYWACHGGHKD 120

Query: 60  LVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
           +V +L  + N+++N  + LG+T LH  A+ K      V++L    A  +++N E      
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALH-AAAWKGYADI-VQLLLAKGARTDLRNIEKKLAFD 178

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
           +A       +++      A     N + Y     +  
Sbjct: 179 MATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497
              + G+  ++ A+        ++L   + ++        T            ++    V
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 498 NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            +   +            PLH A +  N + + + LD    ++  DK G+TAL+
Sbjct: 67  AEQAES---------IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY 111

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  160 bits (405), Expect = 9e-46
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 5/212 (2%)

Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
               N    ++A   +  +    ++   +     D   +  LH A   G+  I   L++ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           G  VN ++    +PLHIA        +  LL  GA V+A  Q G  PL+ A   +   I 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
             LL+  AN ++ D +  T +H A    N+ ++  LL  KA  N +       G TPLHL
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----GNTPLHL 178

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A +         L+     + +++K   T L 
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  157 bits (398), Expect = 7e-45
 Identities = 69/233 (29%), Positives = 101/233 (43%), Gaps = 9/233 (3%)

Query: 310 NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
           N    +L    K     + + +L   +     D +++T LH A  +   + V  L++ G 
Sbjct: 7   NIMICNLAYSGK--LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
            VN  D+ G  PLHIA   G   I   L+  GA+VNA N+   TPLH A  +        
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           LLE GA  DA+       ++ A    NL +V  LL +KA+ N  D  G T LHLA   + 
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184

Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
           V   + L+   A I  +      +  TPL +A       +I K L    +  +
Sbjct: 185 VEEAKFLVTQGASIYIENK----EEKTPLQVAKGGLG--LILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  139 bits (351), Expect = 4e-38
 Identities = 55/232 (23%), Positives = 89/232 (38%), Gaps = 18/232 (7%)

Query: 44  DDGKSCLHIAATKNIR-LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
                  ++A +  +  L   +L         D    T LH   S    +   VE L   
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE--IVEFLLQL 62

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
              VN K+  G +PLHIAA  G  ++V+ L+  GAH    N  G   LH A         
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
            +LL  GA+ + ++++  TA   A    N   + + L Y  +            G   L 
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN-----IQDTEGNTPLH 177

Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
                      K ++ +GA+++ +++  KT L +A   G L ++   L  G 
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  135 bits (342), Expect = 6e-37
 Identities = 45/235 (19%), Positives = 91/235 (38%), Gaps = 19/235 (8%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
              + +   +   +     E +  +++     +++  T LH A   G+ ++V  L+  G 
Sbjct: 7   NIMICN--LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
               K+  G++ LH+A        V  LL KGA +N  N  G T    A          +
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIA 249
            L+ G N +         +    +      G+   V ++L   A+ + +D    T L +A
Sbjct: 125 LLEGGANPD-----AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

Query: 250 VEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
            +   ++  +FL+  GA +    +   +PL +A  K  + ++   L       ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRL-AEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  135 bits (341), Expect = 1e-36
 Identities = 53/274 (19%), Positives = 97/274 (35%), Gaps = 54/274 (19%)

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
                    ++A      ++   ++   +     +     ALH A        V  LL+ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
           G  +N +++ G +   +A                                         G
Sbjct: 63  GVPVNDKDDAGWSPLHIA--------------------------------------ASAG 84

Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLH 279
               VK +L KGA+V+A +Q   T L  A      +I   LL+ GA  D+   +  + +H
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144

Query: 280 LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
            A  K ++ +V +LL       + N +      PLHL    +       K L+  GA++ 
Sbjct: 145 RAAAKGNLKMVHILL---FYKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIY 199

Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           +++ E KTPL +A        +   +  G + ++
Sbjct: 200 IENKEEKTPLQVAKGGL--GLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  112 bits (282), Expect = 2e-28
 Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
           +    T+++  T    A  +  T I + L + G  +ND   D G S LHIAA+     +V
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIV 89

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           + LL     VNAV+  G T LH  AS    +     +L    AN + K+    T +H AA
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAASKNRHE--IAVMLLEGGANPDAKDHYDATAMHRAA 147

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
             GN KMV +L+ + A T  ++ +G   LH+A           L+ +GA I +EN   KT
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207

Query: 174 AFQMAYEMKNFPAIELFLKYGVNV 197
             Q+A        I   L  G   
Sbjct: 208 PLQVAKGGLG--LILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  100 bits (250), Expect = 3e-24
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
             VN  +  G +    A  +    I K L  +GA++N     +G + LH AA+KN   + 
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIA 122

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
            +LLE   + +A D+   T +H  A+        V IL   +A+ NI++ EG+TPLH+A 
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGNTPLHLAC 180

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG------ILLRKGADINV 166
                +  + L+  GA    +N +    L VA G        L +G + ++
Sbjct: 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  156 bits (397), Expect = 2e-44
 Identities = 37/248 (14%), Positives = 73/248 (29%), Gaps = 28/248 (11%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
              +  +  H               ++ ++  T   P     ++         + L    
Sbjct: 18  EYLIEWKDGHSPSWVPSS---YIAADVVSEYET---PWWTAARKADEQAL---SQLLEDR 68

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN 395
           +V+  D+  +T L           V LL + GAD++  D   G   LH+A       +  
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
            L+  GA++   ++   T L +A E    +     ++ G ++          +       
Sbjct: 129 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---KVINVLEGQVFE 185

Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
              +          +      G+ V +L              V+ A+  AK         
Sbjct: 186 YAEV--------DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK------DYE 231

Query: 515 TPLHLAVE 522
             L  AV 
Sbjct: 232 DGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  153 bits (388), Expect = 4e-43
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 35/264 (13%)

Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------ 153
           + N+   +    EG     I  + G+           A       +       A      
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58

Query: 154 --VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
             +  LL +  D++  +  G+TA      + +   + L  + G +++          GG 
Sbjct: 59  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGL 112

Query: 212 LLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
             LH+         V+ ++E GA++  +D+   TAL++A E          +  G  +  
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

Query: 271 LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
            + I   +      ++  + +++ +R              K   +LV  +   +      
Sbjct: 173 EKVI--NVLEGQVFEYAEVDEIVEKRGK-----------GKDVEYLVRWKDGGDCEWV-- 217

Query: 331 LLYHGANVNVKDDENKTPLHIAIE 354
              H A    KD   +  L  A+ 
Sbjct: 218 KGVHVAEDVAKD--YEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  144 bits (366), Expect = 5e-40
 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
              +    E      I  +     +        ADV    ++ + P   A +       +
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS 62

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIAVEMH 454
            +    +V+A ++  +T L       +   +  L E GA +D R  + G   L++A    
Sbjct: 63  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK--------- 505
              +VE L++  A++   D+ G T L LA +I         +     I  +         
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182

Query: 506 ---------IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                    I+    KG    +L    +          +  +   KD      L 
Sbjct: 183 VFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLE 235

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  136 bits (346), Expect = 3e-37
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 35/260 (13%)

Query: 6   NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLL 64
           + T  EG   +        +P     +   A++      + ++    AA K   + +  L
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQL 64

Query: 65  LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAART 123
           LE + DV+AVD  G T L    +    D   V +L    A+++ ++   G T LH+AA  
Sbjct: 65  LE-DRDVDAVDENGRTALL-FVAGLGSDKC-VRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAF 175
              ++V  L++ GA  E ++ +G  AL +A         G  ++ G  I +E        
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV---INV 178

Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV 235
                 +     E+  K G              G  +   +      +   +     A  
Sbjct: 179 LEGQVFEYAEVDEIVEKRG-------------KGKDVEYLVRWKDGGDCEWVKGVHVAED 225

Query: 236 HAKDQLCKTALDIAVEHGHL 255
            AKD   +  L+ AV    +
Sbjct: 226 VAKDY--EDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
           K   +  + +  G     +  K  +           AD+ +       +  TP   A   
Sbjct: 5   KIIGSRTAGE--GAMEYLIEWKDGHSPSWVPSSYIAADVVS-------EYETPWWTAARK 55

Query: 524 NNEAVINKLLDYNPDLDVKDKNGNTALH 551
            +E  +++LL+ + D+D  D+NG TAL 
Sbjct: 56  ADEQALSQLLE-DRDVDAVDENGRTALL 82

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  149 bits (379), Expect = 1e-42
 Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
           N   +H          ++  ++    +N  D +G  PL  A  +G +A+   L+++GA+ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
               K  ++ L +A  +     +  LL+ G  V+     G  PL  AV  +++  V+ LL
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
           +  A+       G   + LAV +   ++ + +  +   +   I
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  144 bits (367), Expect = 5e-41
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 40/201 (19%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
             ++      G +  +   ++    ++   +   +PL  A     IA+V+ LL+      
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------ 57

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                           +GA+  +     ++ L +A      D V
Sbjct: 58  --------------------------------NGADPQLLGKGRESALSLACSKGYTDIV 85

Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQ 420
            +L+  G DVN  D  G  PL  AV   +V     L+  GA+           + +AV  
Sbjct: 86  KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145

Query: 421 KNMSALNYLLEHGAQVDARTQ 441
              S    +  H  ++    +
Sbjct: 146 GYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  143 bits (364), Expect = 1e-40
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
            +H +  +         T +     +N  D+E  TPL  A        V  L+++GAD  
Sbjct: 6   SVHQLAAQGEMLYL--ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
           ++    +  L +A   GY  I   L+  G +VN  +    TPL  AV   ++  +  LLE
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ 474
            GA     T  G + + +AV +   S+ + +      +  + +
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (356), Expect = 2e-39
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 5/168 (2%)

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
             + +H     G +      I     +N  ++   TPL  A     ++ + +LL++GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
               +  +  L +A       IV+ LL    +VN  D  G T L  AV   +V  ++ LL
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
            + AD   +  SG    Y  + LAV     +V   +  +   L    K
Sbjct: 123 ESGADPTIETDSG----YNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (339), Expect = 5e-37
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 48/200 (24%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
            +  +H   + +      +         +N  ++EG TPL  AA  G   +V  L+ +GA
Sbjct: 3   NSLSVH-QLAAQGEMLY-LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
             +       +AL +A        V +LL  G D+N  +  G T    A           
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA----------- 109

Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIA 249
                                      V   H   VK++LE GA+   +      ++D+A
Sbjct: 110 ---------------------------VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142

Query: 250 VEHGHLKIVEFLLDHGACVD 269
           V  G+  + + +  H   + 
Sbjct: 143 VALGYRSVQQVIESHLLKLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  128 bits (324), Expect = 7e-35
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 49/200 (24%)

Query: 50  LHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNI 108
           +H  A +  +  +   +E    +N  D  G T L   A+   +    VE L  N A+  +
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM-WAAAHGQIAV-VEFLLQNGADPQL 64

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
             K  ++ L +A   G   +V++L+D G      +  G   L  A        V +LL  
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
           GAD  +E + G  +  +A                                      V  G
Sbjct: 125 GADPTIETDSGYNSMDLA--------------------------------------VALG 146

Query: 221 HQNAVKLILEKGANVHAKDQ 240
           +++  ++I      +    +
Sbjct: 147 YRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (315), Expect = 9e-34
 Identities = 39/242 (16%), Positives = 69/242 (28%), Gaps = 87/242 (35%)

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
               +H  A  G    +   I+        + +G+  L  A        V  LL+ GAD 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
            +     ++A                                       L L    G+ +
Sbjct: 63  QLLGKGRESA---------------------------------------LSLACSKGYTD 83

Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAI 282
            VK++L+ G +V+  D    T L  AV   H+K V+ LL+ GA         ++ + LA+
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143

Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
              + ++ Q++                                        H   +    
Sbjct: 144 ALGYRSVQQVIES--------------------------------------HLLKLLQNI 165

Query: 343 DE 344
            E
Sbjct: 166 KE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (301), Expect = 9e-32
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
              +H    Q  M  L   +E    ++   + G  PL  A     +++VE LL+  A+  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
              +   + L LA       I++ LL    D+N       W G TPL  AV  N+   + 
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD----WNGGTPLLYAVHGNHVKCVK 119

Query: 531 KLLDYNPDLDVKDKNGNTALH 551
            LL+   D  ++  +G  ++ 
Sbjct: 120 MLLESGADPTIETDSGYNSMD 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (300), Expect = 1e-31
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
                 E+   IN  D   ++G + L  AA    I +V  LL+   D   +     + L 
Sbjct: 18  YLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS 74

Query: 84  TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
            +A  K      V++L     +VN  +  G TPL  A    + K V++L++ GA    + 
Sbjct: 75  -LACSKGYTDI-VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132

Query: 144 HQGYNALHVA--------VGILLRKGADINVENN 169
             GYN++ +A          ++      +     
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  107 bits (269), Expect = 2e-27
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 8/144 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
             +N T++EG T    A    Q  + + L + GA+           +S L +A +K    
Sbjct: 27  NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTD 83

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V++LL+  VDVN  D  G T L   A         V++L  + A+  I+   G   + +
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKC-VKMLLESGADPTIETDSGYNSMDL 141

Query: 120 AARTGNYKMVRVLIDHGAHTECKN 143
           A   G   + +V+  H        
Sbjct: 142 AVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           AD     K   +    A     T I K+L + G ++N  D    +G + L  A   N ++
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLYAVHGNHVK 116

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE 112
            V++LLE   D     + G   +  +A          ++++++   +    KE
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMD-LAVALGYRSV-QQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
               +H          +   ++    ++  D+ G T L 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM 41

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  151 bits (383), Expect = 1e-42
 Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 13/231 (5%)

Query: 329 KTLLYHGANVNVKDDEN---KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
           +++L    +              L  A  +   + V   VK   D +  + +G   LH A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 386 VQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLG 443
           +     +I + LI  GANVN+ + +  TPLH A    +      L++HGA + A T   G
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 444 KDPLYIAVEMHN--LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
                               L   + ++   +      L      +    L         
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVT 180

Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINK-LLDYNPDLDVKDKNGNTALH 551
           +  +         T    A     E  + +      P +  +        H
Sbjct: 181 VLRRDG----PEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  143 bits (363), Expect = 1e-39
 Identities = 44/266 (16%), Positives = 71/266 (26%), Gaps = 48/266 (18%)

Query: 225 VKLILEKGANVHAKDQLC---KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHL 280
           ++ +L K  +     +        L  A   G L++V+  +          +   + LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV 340
           AI   + +IV  L+                                        GANVN 
Sbjct: 61  AICGANYSIVDFLIT--------------------------------------AGANVNS 82

Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIA--VQNGYVAIPN-L 396
            D    TPLH A           LV+HGA +     + G          + GY      L
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142

Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
                ++   N  A   L      +    L++       V  R    +   + A      
Sbjct: 143 ADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQE 201

Query: 457 SIVEQ-LLKFKANVNSSDQFGRTVLH 481
             V +        V       +   H
Sbjct: 202 GYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  135 bits (342), Expect = 9e-37
 Identities = 27/198 (13%), Positives = 63/198 (31%), Gaps = 12/198 (6%)

Query: 361 VSLLVKHGADVNVIDNQ---GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
           +  +++                + L  A   G + +    ++   + +  N+   T LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QF 475
           A+   N S +++L+  GA V++    G  PL+ A   ++  I   L++  A + ++    
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 476 GRTVLHLAVKIQNVA--ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
           G T        +         L   +  +              L     +     ++   
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNS----GAVYALWDY-SAEFGDELSFRE 175

Query: 534 DYNPDLDVKDKNGNTALH 551
             +  +  +D    T   
Sbjct: 176 GESVTVLRRDGPEETDWW 193

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  135 bits (341), Expect = 1e-36
 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 7/200 (3%)

Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
           ++ +LR+  +              L              +  +    + +  ++E  T L
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVV--QQAVKEMNDPSQPNEEGITAL 58

Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN- 407
           H AI    +  V  L+  GA+VN  D+ G  PLH A       I   L++HGA + A   
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 408 KYAKTPLHIAVEQKNMSA--LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
               T        +   A    YL +    +          L+          +      
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGE 177

Query: 466 KANVNSSDQFGRTVLHLAVK 485
              V   D    T    A  
Sbjct: 178 SVTVLRRDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  133 bits (336), Expect = 6e-36
 Identities = 36/234 (15%), Positives = 70/234 (29%), Gaps = 12/234 (5%)

Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTA 245
           +   L+   +  +       +    +LL      G    V+  +++  +    ++   TA
Sbjct: 1   MRSVLRKAGSPRKA---RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA 57

Query: 246 LDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININ 304
           L  A+   +  IV+FL+  GA V+S      +PLH A       I   L+    +   I 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV---QHGAAIF 114

Query: 305 TKGPTN-KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
               ++           +         L     ++ + +      L     ++  D +S 
Sbjct: 115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSF 173

Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAI--PNLIRHGANVNARNKYAKTPLH 415
                  V   D   +     A  +G       N       V  +    K   H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  127 bits (321), Expect = 7e-34
 Identities = 40/213 (18%), Positives = 64/213 (30%), Gaps = 22/213 (10%)

Query: 61  VRLLLEYNVDVNAVDNLGN---TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
           +R +L                  +L   A     +   V+       + +  N+EG T L
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELE--VVQQAVKEMNDPSQPNEEGITAL 58

Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN- 168
           H A    NY +V  LI  GA+    +  G+  LH A           L++ GA I     
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 169 NFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
           + G TAF+     +               ++           G    L        + + 
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLM------NSGAVYALWDYSAEFGDELS 172

Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
               +   V  +D   +T    A  HG    V 
Sbjct: 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  106 bits (266), Expect = 3e-26
 Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 17/190 (8%)

Query: 3   ADVNATNKE---GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-I 58
                  +     + L   A ++ +  + +   +   + + P  ++G + LH A      
Sbjct: 9   GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANY 67

Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPL 117
            +V  L+    +VN+ D+ G T LH  AS           L  + A +      +G T  
Sbjct: 68  SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV--ICMALVQHGAAIFATTLSDGATAF 125

Query: 118 HIAART--GNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGILLRKGADINVEN 168
                   G       L D        N     AL          +     +   +   +
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRD 185

Query: 169 NFGKTAFQMA 178
              +T +  A
Sbjct: 186 GPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 4/154 (2%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
            D +  N+EGIT    AI  +   I   L   GAN+N P    G + LH AA+ N   + 
Sbjct: 45  NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVIC 103

Query: 62  RLLLEYNVDVNAVD-NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
             L+++   + A   + G T        +         L     ++ + N      L   
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           +       +            ++         A 
Sbjct: 164 SA-EFGDELSFREGESVTVLRRDGPEETDWWWAA 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 84.6 bits (210), Expect = 8e-19
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 7/153 (4%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN---IR 59
           A+VN+ +  G T    A   + T I   L + GA I      DG +              
Sbjct: 78  ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
               L +    +  +++     L    S +  D   +   +     V  ++   +T    
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALW-DYSAEFGD--ELSFREGESVTVLRRDGPEETDWWW 194

Query: 120 AARTGNYKMV-RVLIDHGAHTECKNHQGYNALH 151
           AA  G    V R         + +  +  +  H
Sbjct: 195 AALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  149 bits (379), Expect = 2e-42
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADV--NVIDNQGQMPLHIAVQNGYVAIPN- 395
           +  D   +    I  E          +    D   N  D+  + PL +A   G     + 
Sbjct: 2   SHMDKNGEIVEKIKDE--------KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
           L+ +   +  ++    T L  AV+   +     LL  G+ V+ +   GK PL  ++    
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
             +   LL+  ANVN  +  G T L +A K     I++ LL   ADI+A+ +     G T
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL----TGLT 169

Query: 516 PLHLAVESNNEAVINKLLDYN 536
               A     + VI    +  
Sbjct: 170 AEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  146 bits (371), Expect = 2e-41
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 14/204 (6%)

Query: 265 GACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN 324
           G+ +D  +       +  EK     +  L          N +   N+ PL +       N
Sbjct: 1   GSHMD--KNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMEN 49

Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
                 L+ +   +  KD E  T L  A+++        L+  G++VN  D  G+ PL  
Sbjct: 50  AI--DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107

Query: 385 AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           ++  GY  +   L+ HGANVN RN   +TPL +A +      +  LLE GA + AR   G
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167

Query: 444 KDPLYIAVEMHNLSIVEQLLKFKA 467
                 A       +++   + + 
Sbjct: 168 LTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  145 bits (368), Expect = 7e-41
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 11/193 (5%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
           +    I  E    + ++FL ++        +  +PL +A        +  L+    N   
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRD-----SYNRTPLMVACMLGMENAIDKLV---ENFDK 60

Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
           +  K       L   V+         + LL  G+NVN KD   KTPL  +I     +   
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIA--EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118

Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQK 421
            L++HGA+VN  + +G+ PL +A + G   I   L+  GA+++AR+    T    A    
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178

Query: 422 NMSALNYLLEHGA 434
               +    E   
Sbjct: 179 RQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  143 bits (364), Expect = 2e-40
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 59/241 (24%)

Query: 35  GANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPT 94
           G++++     +G+    I   K+I         +   N  D+   T L  VA +   +  
Sbjct: 1   GSHMDK----NGEIVEKIKDEKSINQNL-----DFLRNYRDSYNRTPLM-VACMLGMENA 50

Query: 95  AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153
            ++ L  N   +  K+ EG T L  A +     +   L+  G++   K+  G   L  + 
Sbjct: 51  -IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109

Query: 154 -------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
                     LL  GA++N  N  G+T                                 
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETP-------------------------------- 137

Query: 207 KHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
                  L +  + G    VK +LE GA++ A+D    TA   A   G  ++++   +  
Sbjct: 138 -------LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

Query: 266 A 266
            
Sbjct: 191 R 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  143 bits (363), Expect = 4e-40
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANV--NARNKYAKTPLHIAVEQKNMSALNYL 429
           + +D  G++   I  +         I    +   N R+ Y +TPL +A      +A++ L
Sbjct: 2   SHMDKNGEIVEKIKDEKS-------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNV 489
           +E+  +++ +   G   L  AV+ + L I E+LL   +NVN+ D  G+T L  ++     
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114

Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
            +   LL + A++N + +    +G TPL +A +     ++ KLL+   D+  +D  G TA
Sbjct: 115 EMSYFLLEHGANVNDRNL----EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170

Query: 550 LH 551
             
Sbjct: 171 EA 172

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  129 bits (327), Expect = 4e-35
 Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 91/272 (33%)

Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILL 158
           +  +K G+    I       + +  L ++      ++      L VA        +  L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR 218
                +  ++  G TA   A                                      V+
Sbjct: 56  ENFDKLEDKDIEGSTALIWA--------------------------------------VK 77

Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSP 277
           N      + +L KG+NV+ KD   KT L  ++  G+ ++  FLL+HGA V+       +P
Sbjct: 78  NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137

Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
           L +A +     IV+ LL                                        GA+
Sbjct: 138 LIVASKYGRSEIVKKLLE--------------------------------------LGAD 159

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
           ++ +D    T    A      + + +  +   
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  121 bits (307), Expect = 3e-32
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 14/171 (8%)

Query: 32  AERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKT 90
            +   N  D      ++ L +A        +  L+E    +   D  G+T L   A    
Sbjct: 24  LDFLRNYRD---SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI-WAVKNN 79

Query: 91  RDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNAL 150
           R     E L +  +NVN K+  G TPL  +   G  +M   L++HGA+   +N +G   L
Sbjct: 80  RLGI-AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138

Query: 151 HVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY 193
            VA        V  LL  GADI+  +  G TA   A        I++F + 
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (292), Expect = 3e-30
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 8/156 (5%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
           D   N  +    T    A +         L E    +   D    +G + L  A   N +
Sbjct: 25  DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD---IEGSTALIWAVKNNRL 81

Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
            +   LL    +VN  D  G T L   + I          L  + ANVN +N EG+TPL 
Sbjct: 82  GIAEKLLSKGSNVNTKDFSGKTPLM-WSIIFGYSEM-SYFLLEHGANVNDRNLEGETPLI 139

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           +A++ G  ++V+ L++ GA    ++  G  A   A 
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  146 bits (371), Expect = 2e-41
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 3/177 (1%)

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
             E    +          AV L + +   D+N  D+ G  PLH A + G  A+   LI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           GA +N  N+   TPLH+A    +   +  LL++ A ++A  + G  PL+ A       + 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK-IISGIWKGYT 515
           E L+   A V+  +++G   +  A       + E       ++N        WKG T
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  145 bits (368), Expect = 5e-41
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNINI-NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
            +     + +   V+L L    N++N  +  G +   PLH   +         + L+  G
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFS---PLHWACREGRSAVV--EMLIMRG 62

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
           A +NV +  + TPLH+A      D V  L+++ AD+N ++  G +PLH A   G   +  
Sbjct: 63  ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122

Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
            L+ +GA V+  NKY + P+  A             + G  ++ 
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (346), Expect = 7e-38
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 109/282 (38%)

Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169
           + E    +    R GN   VR+ +D+                           D+N  ++
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTE------------------------NDLNQGDD 37

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLI 228
            G +                                        LH   R G    V+++
Sbjct: 38  HGFSP---------------------------------------LHWACREGRSAVVEML 58

Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHI 287
           + +GA ++  ++   T L +A  HGH  IV+ LL + A ++++ +  + PLH A      
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 288 AIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKT 347
            + + L+                                       +GA V++ +   + 
Sbjct: 119 QVAEDLVA--------------------------------------NGALVSICNKYGEM 140

Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
           P+  A             K G ++N      ++P       G
Sbjct: 141 PVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  132 bits (336), Expect = 2e-36
 Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
             +    +    + G        + +  N +N  + +  +PLH A  +   + +  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
           GA+++   +    PL++A    +  IV++LL++KA++N+ ++ G   LH A       + 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL---DVKDKNGNT 548
           E L+ N A ++         G  P+  A     E +  +      +L     KD     
Sbjct: 122 EDLVANGALVSICNK----YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  131 bits (331), Expect = 8e-36
 Identities = 39/221 (17%), Positives = 59/221 (26%), Gaps = 54/221 (24%)

Query: 75  DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
                  +      +         L     ++N  +  G +PLH A R G   +V +LI 
Sbjct: 2   SPEFMDDIF-TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 135 HGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPA 186
            GA     N      LH+A        V  LL+  ADIN  N  G               
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP------------ 108

Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTA 245
                                      LH     G     + ++  GA V   ++  +  
Sbjct: 109 ---------------------------LHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141

Query: 246 LDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQH 286
           +D A       + E     G  ++       P      K  
Sbjct: 142 VDKAKAPLRELLRERAEKMGQNLN-----RIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  116 bits (293), Expect = 2e-30
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
              +     + N  A+   L++    ++     G  PL+ A      ++VE L+   A +
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           N  ++   T LHLA    +  I++ LL  KADINA        G  PLH A     + V 
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE----HGNVPLHYACFWGQDQVA 121

Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
             L+     + + +K G   + 
Sbjct: 122 EDLVANGALVSICNKYGEMPVD 143

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (281), Expect = 7e-29
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 9   NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEY 67
           + E +               +L  +   N  +   D G S LH A  +    +V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 68  NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
              +N ++   +T LH  AS   RD   V+ L   +A++N  N+ G+ PLH A   G  +
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRD--IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
           +   L+ +GA     N  G   +  A             + G ++N
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  107 bits (271), Expect = 2e-27
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
            D+N  +  G +    A    ++ + ++L  RGA IN  +       + LH+AA+     
Sbjct: 30  NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN---RGDDTPLHLAASHGHRD 86

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V+ LL+Y  D+NAV+  GN  LH  A    +D    E L  N A V+I NK G+ P+  
Sbjct: 87  IVQKLLQYKADINAVNEHGNVPLH-YACFWGQDQV-AEDLVANGALVSICNKYGEMPVDK 144

Query: 120 AARTGNYKMVRVLIDHGA 137
           A       +       G 
Sbjct: 145 AKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKAN-VNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
             D ++      N   V   L    N +N  D  G + LH A +    A++E L++  A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           IN           TPLHLA    +  ++ KLL Y  D++  +++GN  LH
Sbjct: 65  INVMNRGD----DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  144 bits (365), Expect = 1e-40
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 2/152 (1%)

Query: 329 KTLLYHGAN-VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
           K  L  G N VN  D+   TPL  A      + V  L++ GAD +++  + +  L +A  
Sbjct: 19  KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78

Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
            GY  I   L+    ++N  +    TPL  AV   ++  +  LL  GA +      G  P
Sbjct: 79  GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138

Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
           + +AV +    + + +      +  S+     
Sbjct: 139 MDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  143 bits (363), Expect = 2e-40
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 345 NKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN 402
           +   +H        D +   ++ G + VN  D +G  PL  A   G +     L+  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
            +   K  ++ L +A        +  LLE    ++     G  PL  AV  +++  VE L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 463 LKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTP 516
           L   A++ +    G T + LAV +    + + +  +   +    +        P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV----PADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  141 bits (359), Expect = 6e-40
 Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
             + +H     G +      +R G N VN  ++   TPL  A     +  + +LLE GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
                +  +  L +A       IV  LL+   ++N  D  G T L  AV+  +V  +E L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           L   AD+  +  SG    YTP+ LAV      V   + ++   L   +     
Sbjct: 122 LARGADLTTEADSG----YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (335), Expect = 2e-36
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 8/176 (4%)

Query: 209 GGQLLLHL-VRNGHQNAVKLILEKGAN-VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           G  L +H     G  + +K  L KG N V+  D+   T L  A   G ++ V FLL+ GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 267 CVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT 325
               L +   S L LA    +  IV LLL     +++IN        PL   V+      
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKC 117

Query: 326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
              + LL  GA++  + D   TP+ +A+         ++  H   +   +     P
Sbjct: 118 V--EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  130 bits (330), Expect = 1e-35
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 49/201 (24%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRAN-VNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
            +  +H   + +      ++       N VN  ++ G TPL  A+  G  + VR L++ G
Sbjct: 2   DSLSIH-QLAAQGELDQ-LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 137 AHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIE 188
           A       +  +AL +A        VG+LL +  DIN+ +  G T    A          
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA---------- 109

Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
                                       VR  H   V+ +L +GA++  +     T +D+
Sbjct: 110 ----------------------------VRGNHVKCVEALLARGADLTTEADSGYTPMDL 141

Query: 249 AVEHGHLKIVEFLLDHGACVD 269
           AV  G+ K+ + + +H   + 
Sbjct: 142 AVALGYRKVQQVIENHILKLF 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  124 bits (314), Expect = 2e-33
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 11/171 (6%)

Query: 12  GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVD 70
                 Q     +    K    +G N+ +   + G + L  A+    I  VR LLE+  D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
            + +     + L  +AS        V +L     ++NI +  G TPL  A R  + K V 
Sbjct: 62  PHILAKERESALS-LASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 131 VLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
            L+  GA    +   GY  + +A          ++      +   N     
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  112 bits (284), Expect = 2e-29
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 5/142 (3%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
              +H    Q  +  L   L  G   V+   + G  PL  A     +  V  LL++ A+ 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           +   +   + L LA       I+  LL    DIN       W G TPL  AV  N+   +
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYD----WNGGTPLLYAVRGNHVKCV 118

Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
             LL    DL  +  +G T + 
Sbjct: 119 EALLARGADLTTEADSGYTPMD 140

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           AD +   KE  +    A     T I  LL ER  +IN  D    +G + L  A   N ++
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD---WNGGTPLLYAVRGNHVK 116

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTP 116
            V  LL    D+    + G T +  +A          ++++ +   +   N     P
Sbjct: 117 CVEALLARGADLTTEADSGYTPMD-LAVALGYRKV-QQVIENHILKLFQSNLVPADP 171

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  144 bits (365), Expect = 5e-40
 Identities = 44/282 (15%), Positives = 82/282 (29%), Gaps = 66/282 (23%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
           + +L         K     + HG  V       + L  +  +    +VQ ++        
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRII-------- 57

Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
                                         Y   + ++ +DE  T LH A+ +   + V 
Sbjct: 58  ------------------------------YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87

Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNK---YAKTPLHIAV 418
            LV+ G +VN  D+ G  PLH A     V +   L+  GA V A               +
Sbjct: 88  FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 147

Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
           E+       +L     ++    +     L+     ++    E  +K    +    +    
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCMTIIHR---- 200

Query: 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
                   ++   +E       D          +GY P +L 
Sbjct: 201 --------EDEDEIEWWWARLNDK---------EGYVPRNLL 225

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  143 bits (364), Expect = 8e-40
 Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 12/210 (5%)

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHG 400
           +   +  L     +      S  + HG  V   +      L  +   G   +   +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
            + +  N    T LH AV   +   + +L++ G  V+A    G  PL+ A   +N+ + +
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 461 QLLKFKANVNS---SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPL 517
            L++  A V +   SD          ++       + L   +  +              L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK----GVIYAL 176

Query: 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
                 N++ +    +     + +  +   
Sbjct: 177 WDYEPQNDDEL---PMKEGDCMTIIHREDE 203

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  143 bits (363), Expect = 1e-39
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 3/178 (1%)

Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
           +  GQ+ L    +       +  I HG  V   N      L  +  +     +  ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
                    G   L+ AV   +  IV+ L++F  NVN++D  G T LH A    NV + +
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            L+ + A + A   S +          +E         L      + + +K    AL 
Sbjct: 121 FLVESGAAVFAMTYSDMQ-TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  135 bits (343), Expect = 7e-37
 Identities = 45/294 (15%), Positives = 81/294 (27%), Gaps = 96/294 (32%)

Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA 162
             G   L    RT   K     I HG   +         L  +        V  ++ +  
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGH 221
           D ++ N+ G TA                                       LH  V  GH
Sbjct: 62  DPSLPNDEGITA---------------------------------------LHNAVCAGH 82

Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL----QFIHSP 277
              VK +++ G NV+A D    T L  A    ++++ +FL++ GA V ++        + 
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142

Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
               +E+ +    Q L                                            
Sbjct: 143 KCEEMEEGYTQCSQFLYG--------------------------------------VQEK 164

Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI--DNQGQMPLHIAVQNG 389
           + + +      L             L +K G  + +I  +++ ++    A  N 
Sbjct: 165 MGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  126 bits (319), Expect = 2e-33
 Identities = 36/269 (13%), Positives = 76/269 (28%), Gaps = 64/269 (23%)

Query: 43  PD-DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
           P+  G+  L      N  +     + + + V   + L   +L   +S++      V+ + 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLL-DSSLEGEFDL-VQRII 57

Query: 101 TNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------- 153
               + ++ N EG T LH A   G+ ++V+ L+  G +    +  G+  LH A       
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 154 -VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
               L+  GA +                                                
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQ------------------------------------TAA 141

Query: 213 LLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
                +  G+    + +      +   ++    AL            E  +  G C+   
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCM--- 195

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
                     I ++    ++    R N+ 
Sbjct: 196 --------TIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (303), Expect = 3e-31
 Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 19/200 (9%)

Query: 10  KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYN 68
             G         ++           G  +   F     + L  ++ +    LV+ ++   
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 69  VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM 128
            D +  ++ G T LH  A         V+ L     NVN  + +G TPLH AA   N ++
Sbjct: 61  DDPSLPNDEGITALH-NAVCAGHTEI-VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 129 VRVLIDHGAHTECKNH---QGYNALHVA--------VGILLRKGADINVENNFGKTAFQM 177
            + L++ GA      +   Q                   L      + + N     A   
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL-W 177

Query: 178 AYEMKNFPAIELFLKYGVNV 197
            YE +N    EL +K G  +
Sbjct: 178 DYEPQN--DDELPMKEGDCM 195

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (264), Expect = 7e-26
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
             V   N   + L   + +  +  + + +     + + P  D+G + LH A       +V
Sbjct: 29  MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIV 86

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK---EGDTPLH 118
           + L+++ V+VNA D+ G T LH  AS         + L  + A V        +      
Sbjct: 87  KFLVQFGVNVNAADSDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAMTYSDMQTAADKC 144

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG-----ILLRKGADINV 166
                G  +  + L          N     AL          + +++G  + +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTI 197

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 24/140 (17%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSC--LHIAATKN-IR 59
            +VNA + +G T    A   +   + K L E GA +      D ++         +   +
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK-------- 111
             + L      +  ++      L      +  D    E+       + I ++        
Sbjct: 154 CSQFLYGVQEKMGIMNKGVIYALW-DYEPQNDD----ELPMKEGDCMTIIHREDEDEIEW 208

Query: 112 --------EGDTPLHIAART 123
                   EG  P ++    
Sbjct: 209 WWARLNDKEGYVPRNLLGLY 228

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  140 bits (356), Expect = 1e-39
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
              L  A  +   D V +L+ +GA     D  G  PLH+A Q G+ +    L+R G + +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           AR K  +TPLH+A  + + + +  LL+HGA V+A+  L    L+ A E ++  +VE L+K
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           + A+V++  +F +T   +++   N  + E L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (328), Expect = 1e-35
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
              L  A   G    V  L+ +GA   +     SPLHLA +  H +  ++LL      ++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL---RAGVS 59

Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
            + +   ++ PLH+       N    + LL HGA+VN KD    T LH A E    + V 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIV--EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
           LL+K+GADV+      +    I++ NG   +
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (326), Expect = 2e-35
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
               L  A + G       L+ +GA     +    +PLH+A +  + S    LL  G   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
           DART++ + PL++A    + +IVE LLK  A+VN+ D    T LH A +  +  ++E L+
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
              AD++ +         T   +++++ NE +  ++L
Sbjct: 121 KYGADVHTQSK----FCKTAFDISIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  119 bits (301), Expect = 6e-32
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 50/192 (26%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGAD 163
           +    L  AAR G    VR+L+ +GA     +  G + LH+A          +LLR G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
            +      +T                                        LH+    GH 
Sbjct: 60  RDARTKVDRTP---------------------------------------LHMAASEGHA 80

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
           N V+++L+ GA+V+AKD L  TAL  A EH H ++VE L+ +GA V +  +F  +   ++
Sbjct: 81  NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140

Query: 282 IEKQHIAIVQLL 293
           I+  +  + ++L
Sbjct: 141 IDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  117 bits (297), Expect = 2e-31
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           D    L  AA       VR+L+         D LG + LH +A+      T  E+L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLH-LAAQYGHFST-TEVLLRAG 57

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
            + + + K   TPLH+AA  G+  +V VL+ HGA    K+     ALH A        V 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
           +L++ GAD++ ++ F KTAF ++ +  N    E+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  115 bits (292), Expect = 1e-30
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
              L  A        +  L+ +GA       LG  PL++A +  + S  E LL+   + +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
           +  +  RT LH+A    +  I+E LL + AD+NAK +       T LH A E N++ V+ 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM----LKMTALHWATEHNHQEVVE 117

Query: 531 KLLDYNPDLDVKDKNGNTALH 551
            L+ Y  D+  + K   TA  
Sbjct: 118 LLIKYGADVHTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (276), Expect = 2e-28
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 209 GGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
            G+ LL   R G  + V++++  GA     D L  + L +A ++GH    E LL  G   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
           D+  +   +PLH+A  + H  IV++LL    +  ++N K       LH   +        
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWATEHNHQEVV- 116

Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL 364
            + L+ +GA+V+ +    KT   I+I++   D   +L
Sbjct: 117 -ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (271), Expect = 9e-28
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 27  IAKLLAERGANIN-DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHT 84
             ++L   GA    D     G S LH+AA         +LL   V  +A   +  T LH 
Sbjct: 17  EVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH- 72

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
           +A+ +      VE+L  + A+VN K+    T LH A    + ++V +LI +GA    ++ 
Sbjct: 73  MAASEGHANI-VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131

Query: 145 QGYNALHVAV 154
               A  +++
Sbjct: 132 FCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 91.3 bits (228), Expect = 6e-22
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           A     +  G +    A         ++L   G + +         ++ LH+AA++    
Sbjct: 26  APFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART---KVDRTPLHMAASEGHAN 81

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V +LL++  DVNA D L  T LH  A+        VE+L    A+V+ ++K   T   I
Sbjct: 82  IVEVLLKHGADVNAKDMLKMTALH-WATEHNHQEV-VELLIKYGADVHTQSKFCKTAFDI 139

Query: 120 AARTGNYKMVRVL 132
           +   GN  +  +L
Sbjct: 140 SIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
               L  A +      +  L+ N A          W G +PLHLA +  + +    LL  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD-----WLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 536 NPDLDVKDKNGNTALH 551
               D + K   T LH
Sbjct: 57  GVSRDARTKVDRTPLH 72

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  139 bits (354), Expect = 3e-39
 Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
            L  A +   +  V+ L      ++N          PLH        +    + LL HGA
Sbjct: 11  QLLEAAKAGDVETVKKLC--TVQSVNCRDIEGRQSTPLHFAAGYNRVSVV--EYLLQHGA 66

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
           +V+ KD     PLH A     ++   LLVKHGA VNV D     PLH A   G   I   
Sbjct: 67  DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           L++HGA+   +N+   TPL +  +  +    + L    A
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  133 bits (338), Expect = 5e-37
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 6/168 (3%)

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAI 393
           GA  N +       L  A ++   + V  L      +   I+ +   PLH A     V++
Sbjct: 1   GAMGNSEA---DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
              L++HGA+V+A++K    PLH A    +      L++HGA V+        PL+ A  
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117

Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
                I + LL+  A+    ++ G T L L     +  I + L  + A
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  130 bits (329), Expect = 1e-35
 Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSA 425
           GA  N   ++    L  A + G V            N         TPLH A     +S 
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
           + YLL+HGA V A+ + G  PL+ A    +  + E L+K  A VN +D +  T LH A  
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117

Query: 486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
                I + LL + AD   K       G TPL L  + + +     LL
Sbjct: 118 KGKYEICKLLLQHGADPTKKNR----DGNTPLDLVKDGDTDIQ--DLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  123 bits (312), Expect = 2e-33
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 35  GANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRD 92
           GA  N     +    L  AA    +  V+ L     V+   ++   +T LH  A+   R 
Sbjct: 1   GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV 55

Query: 93  PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              VE L  + A+V+ K+K G  PLH A   G+Y++  +L+ HGA     +   +  LH 
Sbjct: 56  SV-VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE 114

Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
           A          +LL+ GAD   +N  G T   +  +  +    +L     
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  115 bits (292), Expect = 1e-30
 Identities = 52/268 (19%), Positives = 77/268 (28%), Gaps = 107/268 (39%)

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163
           A  N    E D  L  AA+ G+ + V+ L                              +
Sbjct: 2   AMGN---SEADRQLLEAAKAGDVETVKKLCTVQ------------------------SVN 34

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
                    T                                        LH        
Sbjct: 35  CRDIEGRQSTP---------------------------------------LHFAAGYNRV 55

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
           + V+ +L+ GA+VHAKD+     L  A  +GH ++ E L+ HGA V+    +  +PLH A
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115

Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
             K    I +LLL+                                      HGA+   K
Sbjct: 116 AAKGKYEICKLLLQ--------------------------------------HGADPTKK 137

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGA 369
           + +  TPL +  +    D   LL    A
Sbjct: 138 NRDGNTPLDLVKDGDT-DIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (270), Expect = 2e-27
 Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 12/163 (7%)

Query: 9   NKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKN-IRLVRLLLE 66
           N E      +A  +      K L      N  D       + LH AA  N + +V  LL+
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 67  YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126
           +  DV+A D  G   LH   S    +    E+L  + A VN+ +    TPLH AA  G Y
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121

Query: 127 KMVRVLIDHGAHTECKNHQGYNALHVA-------VGILLRKGA 162
           ++ ++L+ HGA    KN  G   L +          +L    A
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  100 bits (252), Expect = 5e-25
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
             +         T    A   ++  + + L + GA+++  D     G   LH A +    
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD---KGGLVPLHNACSYGHY 88

Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
            +  LL+++   VN  D    T LH  A+ K +     ++L  + A+   KN++G+TPL 
Sbjct: 89  EVAELLVKHGAVVNVADLWKFTPLH-EAAAKGKYEI-CKLLLQHGADPTKKNRDGNTPLD 146

Query: 119 IAARTGNYKMVRVLIDHGA 137
           +    G+  +  +L    A
Sbjct: 147 LVKD-GDTDIQDLLRGDAA 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  138 bits (351), Expect = 1e-38
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 367 HGADVNVI-DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMS 424
            G+  +    +     L  A + G       L+ +GA+VNA +    TPLH+A    ++ 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 425 ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
            +  LL++GA V+A    G  PL +A    +L IVE LLK  A+VN++D  G T LHLA 
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

Query: 485 KIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
              ++ I+E LL N AD+NA+       G T   +++++ NE +   L   N
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDK----FGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  137 bits (347), Expect = 4e-38
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 41/205 (20%)

Query: 231 KGANV-HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIA 288
           +G++  H         L  A   G    V  L+ +GA V++      +PLHLA    H+ 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 289 IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTP 348
           IV++LL+                                      +GA+VN  D    TP
Sbjct: 62  IVEVLLK--------------------------------------NGADVNAVDHAGMTP 83

Query: 349 LHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN 407
           L +A      + V +L+K+GADVN  D +G  PLH+A   G++ I   L+++GA+VNA++
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143

Query: 408 KYAKTPLHIAVEQKNMSALNYLLEH 432
           K+ KT   I+++  N      L + 
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  128 bits (325), Expect = 5e-35
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 48/201 (23%)

Query: 72  NAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRV 131
           +   +     L   A+   RD   V IL  N A+VN ++  G TPLH+AA  G+ ++V V
Sbjct: 8   HHHGSDLGKKLL-EAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 132 LIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKN 183
           L+ +GA     +H G   L +A        V +LL+ GAD+N  +  G T   +A     
Sbjct: 66  LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA----- 120

Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK 243
                                               GH   V+++L+ GA+V+A+D+  K
Sbjct: 121 ---------------------------------AMFGHLEIVEVLLKNGADVNAQDKFGK 147

Query: 244 TALDIAVEHGHLKIVEFLLDH 264
           TA DI++++G+  + E L   
Sbjct: 148 TAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  125 bits (317), Expect = 6e-34
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 48/204 (23%)

Query: 104 ANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
           ++ +  +  +    L  AAR G    VR+L+ +GA    ++  G+  LH+A        V
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
            +LL+ GAD+N  ++ G T  ++A                                    
Sbjct: 64  EVLLKNGADVNAVDHAGMTPLRLA------------------------------------ 87

Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QF 273
                GH   V+++L+ GA+V+A D    T L +A   GHL+IVE LL +GA V++  +F
Sbjct: 88  --ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145

Query: 274 IHSPLHLAIEKQHIAIVQLLLRRN 297
             +   ++I+  +  + ++L + N
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  125 bits (316), Expect = 8e-34
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 42/195 (21%)

Query: 203 HENVKHG--GQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
           H +  HG      L    R G  + V++++  GA+V+A+D    T L +A  +GHL+IVE
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 260 FLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
            LL +GA V+++     +PL LA    H+ IV++LL+                       
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK----------------------- 101

Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378
                          +GA+VN  D E  TPLH+A      + V +L+K+GADVN  D  G
Sbjct: 102 ---------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146

Query: 379 QMPLHIAVQNGYVAI 393
           +    I++ NG   +
Sbjct: 147 KTAFDISIDNGNEDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  124 bits (314), Expect = 2e-33
 Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 34  RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
           RG++ +     D    L  AA       VR+L+    DVNA D  G T LH +A+     
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLH-LAAFNGHL 60

Query: 93  PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              VE+L  N A+VN  +  G TPL +AA  G+ ++V VL+ +GA     + +G+  LH+
Sbjct: 61  EI-VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119

Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY 193
           A        V +LL+ GAD+N ++ FGKTAF ++ +  N    E+  K 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (309), Expect = 7e-33
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
              HG+++          L  A        +  L+ +GA V+A    G  PL++A    +
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D  G T L LA    ++ I+E LL N AD+NA  +    +G+T
Sbjct: 60  LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM----EGHT 115

Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           PLHLA    +  ++  LL    D++ +DK G TA  
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (271), Expect = 2e-27
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 9/156 (5%)

Query: 3   ADVNATN-KEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
           +  +  +  +      +A  + +    ++L   GA++N  D     G + LH+AA    +
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAED---ASGWTPLHLAAFNGHL 60

Query: 59  RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
            +V +LL+   DVNAVD+ G T L  +A++       VE+L  N A+VN  + EG TPLH
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLR-LAALFGHLEI-VEVLLKNGADVNANDMEGHTPLH 118

Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           +AA  G+ ++V VL+ +GA    ++  G  A  +++
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  138 bits (350), Expect = 2e-38
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 4/174 (2%)

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
               +    E      I  +     +        ADV    ++ + P   A +       
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQAL 60

Query: 395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIAVEM 453
           + +    +V+A ++  +T L       +   +  L E GA +D R  + G   L++A   
Sbjct: 61  SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
               +VE L++  A++   D+ G T L LA +I         +     I  + +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  133 bits (336), Expect = 2e-36
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
              +  +  H               ++ ++  T   P     ++         + L    
Sbjct: 17  EYLIEWKDGHSPSWVPSS---YIAADVVSEYET---PWWTAARKADEQAL---SQLLEDR 67

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN 395
           +V+  D+  +T L           V LL + GAD++  D   G   LH+A       +  
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
            L+  GA++   ++   T L +A E    +     ++ G ++  
Sbjct: 128 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  127 bits (321), Expect = 2e-34
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 8/177 (4%)

Query: 299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCW 358
           N I  +           +  +    ++  +    Y  A+V     E +TP   A      
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDG--HSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57

Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN-KYAKTPLHI 416
            A+S L+    DV+ +D  G+  L      G       L   GA+++ R+ +   T LH+
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           A        +  L+E GA ++   + G   L +A E+   +     ++F   +    
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  120 bits (303), Expect = 6e-32
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
               +           I  +  +  +        A V +     + P + A    +   +
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQAL 60

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
            QLL+   +V++ D+ GRT L     + +   +  L    AD++ + + G   G T LH+
Sbjct: 61  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG---GLTALHM 116

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           A       V+  L++   D++V+D+ G TAL 
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALE 148

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (300), Expect = 2e-31
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 63/227 (27%)

Query: 210 GQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
           G +   +  ++GH  +        A+V ++    +T    A      + +  LL     V
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDV 69

Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
           D++ +   + L           V+LL                                  
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAE-------------------------------- 97

Query: 328 FKTLLYHGANVNVKDDEN-KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
                  GA+++ +D     T LH+A      + V  LV+ GAD+ V D +G   L +A 
Sbjct: 98  ------AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151

Query: 387 QNGYVAI-PNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +        N ++ G  +                      +N L   
Sbjct: 152 EILKTTPKGNPMQFGRRIGL-----------------EKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  118 bits (298), Expect = 4e-31
 Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI--- 156
           + N+   +    EG     I  + G+           A       +       A      
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 57

Query: 157 ----LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
                L +  D++  +  G+TA      + +   + L  + G +++          GG  
Sbjct: 58  QALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLT 112

Query: 213 LLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
            LH+         V+ ++E GA++  +D+   TAL++A E          +  G  +   
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG-- 170

Query: 272 QFIHSPLHLAIEKQHIAIVQLLL 294
                            ++ +L 
Sbjct: 171 --------------LEKVINVLE 179

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (296), Expect = 7e-31
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 17/176 (9%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
              + T  EG   +        +P     +   A++      + ++    AA K   + +
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 60

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIA 120
             LLE + DV+AVD  G T L    +    D   V +L    A+++ ++ + G T LH+A
Sbjct: 61  SQLLE-DRDVDAVDENGRTALL-FVAGLGSDKC-VRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN 168
           A     ++V  L++ GA  E ++ +G  AL +A         G  ++ G  I +E 
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  133 bits (338), Expect = 5e-37
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
            L  A  +  +  +  LL    NN+N+N +    +  L ++      N  + + LL  GA
Sbjct: 8   ELASAAARGDLEQLTSLL---QNNVNVNAQNGFGRTALQVMKLG---NPEIARRLLLRGA 61

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
           N ++KD      +H A  +   D +  L++  ADVN+ DN+G +PLH+A + G++ +   
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 396 LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           L++H A NV  RN    T   +A        ++ +  +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  131 bits (333), Expect = 3e-36
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 1/160 (0%)

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
            +     L  A      + ++ L+++  +VN  +  G+  L +           L+  GA
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA 61

Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
           N + +++     +H A     +  L  LLE  A V+     G  PL++A +  +L +VE 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 462 LLKFKA-NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           L+K  A NV   +  G T   LA       ++  +  N A
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  125 bits (317), Expect = 5e-34
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 374 IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +       L  A   G +     L+++  NVNA+N + +T L +     N      LL  
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
           GA  D + + G   ++ A     L  ++ LL+F+A+VN  D  G   LHLA K  ++ ++
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 493 ECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
           E L+ + A ++  +      KG T   LA       V++ +   
Sbjct: 120 EFLVKHTASNVGHRNH----KGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (297), Expect = 3e-31
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 44  DDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
           +   + L  AA +  +  +  LL+ NV+VNA +  G T L  V  +   +      L   
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPE--IARRLLLR 59

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
            AN ++K++ G   +H AAR G    ++ L++  A    ++++G   LH+A        V
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 155 GILLRKGA-DINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
             L++  A ++   N+ G TA  +A        + L    G
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  115 bits (290), Expect = 3e-30
 Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 104/260 (40%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG 171
                L  AA  G+ + +  L+ +                           ++N +N FG
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNV-------------------------NVNAQNGFG 38

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
           +TA                                       L +++ G+    + +L +
Sbjct: 39  RTA---------------------------------------LQVMKLGNPEIARRLLLR 59

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
           GAN   KD+     +  A   G L  ++ LL+  A V+      + PLHLA ++ H+ +V
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA-NVNVKDDENKTPL 349
           + L++                                      H A NV  ++ +  T  
Sbjct: 120 EFLVK--------------------------------------HTASNVGHRNHKGDTAC 141

Query: 350 HIAIESQCWDAVSLLVKHGA 369
            +A      + VSL+  +GA
Sbjct: 142 DLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (278), Expect = 1e-28
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHT 84
               L +   N+N  +     G++ L +    N  + R LL    + +  D  G  V+H 
Sbjct: 20  QLTSLLQNNVNVNAQN---GFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH- 75

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT-ECKN 143
            A+      T ++ L   +A+VNI++ EG+ PLH+AA+ G+ ++V  L+ H A     +N
Sbjct: 76  DAARAGFLDT-LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134

Query: 144 HQGYNALHVA--------VGILLRKGA 162
           H+G  A  +A        V ++   GA
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (257), Expect = 1e-25
 Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
            +VNA N  G T  Q         IA+ L  RGAN +  D     G + +H AA    + 
Sbjct: 29  VNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKD---RTGFAVIHDAARAGFLD 84

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLH 118
            ++ LLE+  DVN  DN GN  LH +A+ +      VE L  + A NV  +N +GDT   
Sbjct: 85  TLQTLLEFQADVNIEDNEGNLPLH-LAAKEGHLRV-VEFLVKHTASNVGHRNHKGDTACD 142

Query: 119 IAARTGNYKMVRVLIDHGA 137
           +A   G  ++V ++  +GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 2e-11
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
               L  A    ++  L  LL N  ++NA+       G T L +     N  +  +LL  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----GRTALQVMKL-GNPEIARRLLLR 59

Query: 536 NPDLDVKDKNGNTALH 551
             + D+KD+ G   +H
Sbjct: 60  GANPDLKDRTGFAVIH 75

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 7e-06
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                L  A    +   +  LL  N +++ ++  G TAL 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 43

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  130 bits (330), Expect = 1e-35
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 16/179 (8%)

Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
           +  +  A           L  +   +     K       L            +   L+  
Sbjct: 7   YRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRN--NNDEARYKISMFLINK 64

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVS------LLVKHGADVNVIDNQGQMPLHIAVQN 388
           GA++  +  E  T      +    D         + ++ GAD+  +    ++ +   + N
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 389 GYVAIPN--------LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
            +V              + G  +  ++K+  T L      +   AL  + ++  + + +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  121 bits (306), Expect = 3e-32
 Identities = 22/178 (12%), Positives = 45/178 (25%), Gaps = 19/178 (10%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK---TPLHIAIESQCWDAVSLLVKHGA 369
            +             F  L   G        ++      L    +   +     L+  GA
Sbjct: 9   TVSAAAMLG--TYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-------LIRHGANVNARNKYAKTPLHIAVEQKN 422
           D+     +G        Q G   I          +  GA++ A  K  K  +   +    
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 423 MSALN-------YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           +              + G Q+  + + G   L           ++ +  +    N  +
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  120 bits (303), Expect = 6e-32
 Identities = 23/181 (12%), Positives = 49/181 (27%), Gaps = 19/181 (10%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQ----FIHSPLHLAIEKQHIAIVQLLLRRNNN 299
             +  A   G  +    L + G            ++  L    ++    I   L+   N 
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI---NK 64

Query: 300 NININTKGPTNKAPLHLVVQRKSWN----TTMFKTLLYHGANVNVKDDENKTPLHIAIES 355
             +I ++          + Q    +    T + K  L  GA++       K  +   I +
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 356 QCWDAVS-------LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN 407
              D          +  + G  + + D  G   L    +         +  +    N + 
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

Query: 408 K 408
            
Sbjct: 185 N 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  118 bits (297), Expect = 4e-31
 Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 19/180 (10%)

Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN----GYVAIPN-LIR 398
                +  A     ++    L + G +           L+  ++N        I   LI 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALN------YLLEHGAQVDARTQLGKDPLYIAVE 452
            GA++ +R K   T      +                LE GA + A  +  K  ++  + 
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 453 MHNLSIVEQ-------LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            + +   E          +    +   D++G T L    + Q    L+ +       N K
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  109 bits (275), Expect = 5e-28
 Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 18/187 (9%)

Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANV---HAKDQLCKTALDIAVEHGHLKIVEFL 261
           N     + +      G       + EKG        K  +    L    +    KI  FL
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 262 LDHGACVDSLQFI-HSPLHLAIEKQH------IAIVQLLLRRNNNNININTKGPTNKAPL 314
           ++ GA + S      +      +           + ++ L       +I       K  +
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL---EKGADITALYKPYKIVV 118

Query: 315 HLVVQRKSWNTTMFKT-----LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
              +     +               G  + +KD    T L      Q   A+ ++  +  
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

Query: 370 DVNVIDN 376
             N+ +N
Sbjct: 179 KYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  104 bits (262), Expect = 3e-26
 Identities = 30/230 (13%), Positives = 55/230 (23%), Gaps = 68/230 (29%)

Query: 50  LHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA--VEILKTNRANV 106
           +  AA          L E   +      L + +L+ V      +        L    A++
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68

Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
             + KEG T      + G   +                           I L KGADI  
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTTE-------------------LCKIFLEKGADITA 109

Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
                K                                        +   + N   +  +
Sbjct: 110 LYKPYKIV--------------------------------------VFKNIFNYFVDENE 131

Query: 227 -------LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
                  +  + G  +  KD+   TAL+          ++ + D+    +
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (259), Expect = 7e-26
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 17/156 (10%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-- 57
           D +    +     + +     ++  I+  L  +GA+I        +G +           
Sbjct: 32  DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT---KEGTTLFFPLFQGGGN 88

Query: 58  -----IRLVRLLLEYNVDVNAVDNLGNTVLHTVA-----SIKTRDPTAVEILKTNRANVN 107
                  L ++ LE   D+ A+      V+               P    I   +   + 
Sbjct: 89  DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
           IK+K G T L    R      ++++ D+      K 
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 96.3 bits (240), Expect = 3e-23
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 22/164 (13%)

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV---DARTQLGKDPLYIAVEMHNLSIVE 460
           NA ++Y    +  A           L E G +      ++ +  D L    +     I  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 461 QLLKFKANVNSSDQFGRTVLHLAVK------IQNVAILECLLVNKADINAKIISGIWKGY 514
            L+   A++ S  + G T+     +           + +  L   ADI A          
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK----PYK 115

Query: 515 TPLHLAVESNNEAVINK-------LLDYNPDLDVKDKNGNTALH 551
             +   + +                      L +KDK G TAL 
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 3   ADVNATNKEGITLFQQAI------VSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAA 54
           AD+ +  KEG TLF          ++  T + K+  E+GA+I          K  +    
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY---KPYKIVVFKNI 122

Query: 55  TKN-------IRLVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV 106
                     I L +L+  +  + +   D  G T L  V   + + P A+++++      
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK--RCQKPIALKMMEDYIKKY 180

Query: 107 NIKNK 111
           N+K  
Sbjct: 181 NLKEN 185

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  128 bits (324), Expect = 3e-35
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
           G +    +   +T LHIA       +V  L+++G+D NV D+ G  PLH A  +G++ + 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
             L++H A VN       +PLH A +  ++  +  LL +GA  +A    G  P+    + 
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 454 HNLSIVEQLLKFKANVNS 471
              S++    K +++  S
Sbjct: 120 SMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  115 bits (292), Expect = 8e-31
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
           G D    +++G+  LHIA   G +     L+++G++ N ++    TPLH A    ++  +
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
             LL+H A V+        PL+ A +  ++ IV+ LL + A+ N+ + FG   +      
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 487 QNVAILECLLVNKADINA 504
              ++L  L       +A
Sbjct: 120 SMKSLLL-LPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  110 bits (278), Expect = 6e-29
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 40/175 (22%)

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIV 290
           G +    +   +T L IA   G +  VE+LL +G+  +       +PLH A    H+ +V
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
           +LLL+                                      H A VN    +N +PLH
Sbjct: 60  ELLLQ--------------------------------------HKALVNTTGYQNDSPLH 81

Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405
            A ++   D V LL+ +GA  N ++  G  P+         ++  L     + +A
Sbjct: 82  DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (265), Expect = 4e-27
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 35  GANIN-DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
           G +   +     G++ LHIA+ K  I  V  LL+   D N  D+ G T LH  A      
Sbjct: 1   GIDPFTN---HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH-EACNHGHL 56

Query: 93  PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              VE+L  ++A VN    + D+PLH AA+ G+  +V++L+ +GA     N  G   +  
Sbjct: 57  KV-VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

Query: 153 A-------VGILLRKGADIN 165
                   + +L  K    +
Sbjct: 116 TDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  104 bits (261), Expect = 1e-26
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 35/165 (21%)

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163
            +    N  G+T LHIA+  G+   V  L+ +G+                         D
Sbjct: 2   IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGS-------------------------D 35

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGH 221
            NV+++ G T    A    +   +EL L++   V       N   +     LH   +NGH
Sbjct: 36  PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-------NTTGYQNDSPLHDAAKNGH 88

Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
            + VKL+L  GA+ +A +      +D   +     ++     + +
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (257), Expect = 5e-26
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           G +    N   +T LHIA  + ++ ++ YLL++G+  + +   G  PL+ A    +L +V
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           E LL+ KA VN++     + LH A K  +V I++ LL   A  NA  I     G  P+  
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI----FGLRPVDY 115

Query: 520 AVESNNEAVINKLLD 534
             + + ++++  L +
Sbjct: 116 TDDESMKSLL-LLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (255), Expect = 9e-26
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 40/168 (23%)

Query: 205 NVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
              H G+ LLH+    G   +V+ +L+ G++ + KD    T L  A  HGHLK+VE LL 
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 264 HGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKS 322
           H A V++  +   SPLH A +  H+ IV+LLL                            
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--------------------------- 97

Query: 323 WNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
                      +GA+ N  +     P+    +      + L  K+ + 
Sbjct: 98  -----------YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 95.2 bits (238), Expect = 2e-23
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
            D   TN  G TL   A +    P  + L + G++ N  D     G + LH A     ++
Sbjct: 2   IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD---HAGWTPLHEACNHGHLK 57

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V LLL++   VN      ++ LH  A+        V++L +  A+ N  N  G  P+  
Sbjct: 58  VVELLLQHKALVNTTGYQNDSPLH-DAAKNGHVDI-VKLLLSYGASRNAVNIFGLRPVDY 115

Query: 120 AARTGNYKMVRVLIDHGAHT 139
                   ++ +   + + +
Sbjct: 116 TDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G+  L+IA    ++  VE LL+  ++ N  D  G T LH A    ++ ++E LL +KA +
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           N        +  +PLH A ++ +  ++  LL Y    +  +  G   + 
Sbjct: 70  NTTGY----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            D          +G T LH+A    +   +  LL    D +VKD  G T LH
Sbjct: 2   IDPFTNH-----RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH 48

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
           A VN T  +  +    A  +    I KLL   GA+ N  +     G   +     ++++ 
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN---IFGLRPVDYTDDESMKS 123

Query: 61  VRLLLEYNVDVNA 73
           + LL E N   +A
Sbjct: 124 LLLLPEKNESSSA 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  127 bits (323), Expect = 5e-35
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
            L  A  +  +  V+ LL  +   ++ +      K  L +++     +T +   LL  GA
Sbjct: 5   RLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFG---STAIALELLKQGA 59

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL 396
           + NV+D    +P+H A  +   D + +LV+HGADVNV D  G +P+H+AVQ G+ A+ + 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           +   ++++ R+    TPL +A+++     ++ L  H
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  127 bits (321), Expect = 1e-34
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)

Query: 347 TPLHIAIESQCWDAV-SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
             L  A        V  LL +     + ++  G+  L +    G  AI   L++ GA+ N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
            ++    +P+H A     +  L  L+EHGA V+     G  P+++AV+  + ++V  L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
            +++++  D  G T L LA++     +++ L 
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  121 bits (307), Expect = 1e-32
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           L     + +  +   KT L + +          L+K GA  NV D  G  P+H A + G+
Sbjct: 22  LHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGF 80

Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI 449
           +     L+ HGA+VN  +     P+H+AV++ + + +++L    + +  R   G  PL +
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL 139

Query: 450 AVEMHNLSIVEQLLK 464
           A++     +V+ L  
Sbjct: 140 ALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  119 bits (302), Expect = 6e-32
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 381 PLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
            L  A   G V      L R   + +A N++ KT L + +   + +    LL+ GA  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63

Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           +   G  P++ A     L  ++ L++  A+VN  D  G   +HLAV+  + A++   L  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAA 122

Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
           ++D++ +      +G TPL LA++   + +++ L  
Sbjct: 123 ESDLHRRDA----RGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (291), Expect = 1e-30
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 113 GDTPLHIAARTGNYKMVRVLID-HGAHTECKNHQGYNALHVA-------VGILLRKGADI 164
               L  AA  G+ + VR L+     H +  N  G  AL V           LL++GA  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGHQ 222
           NV++  G +    A        +++ +++G +V       NV    G L +HL V+ GH 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGHT 114

Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
             V   L   +++H +D    T L++A++ G   +V+ L  H
Sbjct: 115 AVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (274), Expect = 3e-28
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 412 TPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
             L  A  + ++  +  LL       DA  + GK  L + +     +I  +LLK  A+ N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPN 62

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
             D  G + +H A +   +  L+ L+ + AD+N         G  P+HLAV+  + AV+ 
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV- 117

Query: 531 KLLDYNPDLDVKDKNGNTALH 551
             L    DL  +D  G T L 
Sbjct: 118 SFLAAESDLHRRDARGLTPLE 138

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (264), Expect = 7e-27
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 12/138 (8%)

Query: 50  LHIAATK-NIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVN 107
           L  AA + +++ VR LL    V  +A++  G T L  V    +        L    A+ N
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTA--IALELLKQGASPN 62

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI-------LLRK 160
           +++  G +P+H AARTG    ++VL++HGA     +  G   +H+AV          L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 161 GADINVENNFGKTAFQMA 178
            +D++  +  G T  ++A
Sbjct: 123 ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.4 bits (249), Expect = 9e-25
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
              +A N+ G T  Q   +   T IA  L ++GA+ N  D     G S +H AA    + 
Sbjct: 27  VHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQD---TSGTSPVHDAARTGFLD 82

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
            +++L+E+  DVN  D  G   +H +A  +      V  L    ++++ ++  G TPL +
Sbjct: 83  TLKVLVEHGADVNVPDGTGALPIH-LAVQEGHTAV-VSFLA-AESDLHRRDARGLTPLEL 139

Query: 120 AARTGNYKMVRVLIDH 135
           A + G   +V +L  H
Sbjct: 140 ALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHT 84
           + +LL     + +  +     GK+ L +    +  +   LL+     N  D  G + +H 
Sbjct: 18  VRRLLHRELVHPDALN---RFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVH- 73

Query: 85  VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
            A+      T +++L  + A+VN+ +  G  P+H+A + G+  +V  L    +    ++ 
Sbjct: 74  DAARTGFLDT-LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA 131

Query: 145 QGYNALHVA 153
           +G   L +A
Sbjct: 132 RGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.8 bits (211), Expect = 1e-19
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 443 GKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
             D L  A    ++  V +LL +   + ++ ++FG+T L + +   + AI   LL   A 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            N +       G +P+H A  +     +  L+++  D++V D  G   +H
Sbjct: 61  PNVQDT----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNP-DLDVKDKNGNTALH 551
           +    L  A    +   + +LL       D  ++ G TAL 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ 41

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  131 bits (331), Expect = 7e-35
 Identities = 55/270 (20%), Positives = 99/270 (36%), Gaps = 59/270 (21%)

Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLV-------KHGADVNVID-NQGQMPLHIA 385
             A        ++  +  A+       +  L+       K   D    D   G+  L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 386 VQNGYV----AIPNLIRHGA-----------NVNARNKYAKTPLHIAVEQKNMSALNYLL 430
           + N +      I  L+               +        +T LHIA+E++NM+ +  L+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 431 EHGAQVDART--------------QLGKDPLYIAVEMHNLSIVEQLLK---FKANVNSSD 473
           E+GA V A                  G+ PL +A   + L+IV+ LL+     A++++ D
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 474 QFGRTVLHLAVKIQN---------VAILECLLVNKADINAKIISGIWK---GYTPLHLAV 521
             G TVLH  V++ +          ++   +L+  A ++  +         G TPL LA 
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

Query: 522 ESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            S    V+  +L        ++ +     H
Sbjct: 242 SSGKIGVLAYILQ-------REIHEPECRH 264

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  125 bits (315), Expect = 1e-32
 Identities = 48/292 (16%), Positives = 92/292 (31%), Gaps = 74/292 (25%)

Query: 207 KHGGQLLLHLVRNGHQNAVKLILE-------KGANVHAKD-QLCKTALDIAV---EHGHL 255
            +  + +   V   +   ++ +L        +  +   KD +  KT L  A+    +G  
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 256 KIVEFLLDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
             +  LLD     DSL+               + LH+AIE++++ +V LL+    N  ++
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE---NGADV 127

Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
                                        +            + PL +A  +     V  
Sbjct: 128 QAAA---------------------NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166

Query: 364 LVKHG---ADVNVIDNQGQMPLHIAVQNGYVAIPN-----------------LIRHGANV 403
           L+++    AD++  D+ G   LH  V+     + N                 L       
Sbjct: 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226

Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
              N+   TPL +A     +  L Y+L+             +  + A   H+
Sbjct: 227 EITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  123 bits (310), Expect = 7e-32
 Identities = 55/325 (16%), Positives = 101/325 (31%), Gaps = 85/325 (26%)

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLD-------HGACVDSLQFIH--SPLHLA- 281
            A         + ++  AV   + + +E LL             +        + L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 282 --IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
             +       + LLL       ++                             +  A+  
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLK---------------------------QFVNASYT 95

Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN--------------QGQMPLHIA 385
               + +T LHIAIE +    V+LLV++GADV    N               G++PL +A
Sbjct: 96  DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155

Query: 386 VQNGYVAIPN-LIRHG---ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
                +AI   L+++    A+++AR+    T LH  VE  + +  N              
Sbjct: 156 ACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT------------- 202

Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
                   ++    L +  +L         +++ G T L LA     + +L  +L  +  
Sbjct: 203 ----KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258

Query: 502 INAKIISGIWKGYTPLHLAVESNNE 526
                           H A   ++ 
Sbjct: 259 -----------EPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  118 bits (298), Expect = 2e-30
 Identities = 48/345 (13%), Positives = 98/345 (28%), Gaps = 107/345 (31%)

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGA 162
            A            +  A    N + +  L+                    +    ++  
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPF------------------LQRSKKRLT 44

Query: 163 DINV-ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
           D    +   GKT    A                                   +  + NG 
Sbjct: 45  DSEFKDPETGKTCLLKA-----------------------------------MLNLHNGQ 69

Query: 222 QNAVKLILEKGANVHAKDQLC-----------KTALDIAVEHGHLKIVEFLLDHGACVD- 269
            + + L+L+      +  Q             +TAL IA+E  ++ +V  L+++GA V  
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 270 --------------SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLH 315
                            F   PL LA     +AIV+ LL+ +    +I+ +       LH
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
            +V+                      +  + T    ++ ++     + L        + +
Sbjct: 190 ALVE-------------------VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230

Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
            +G  PL +A  +G + +   +++   +            H A  
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQREIHEP-------ECRHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (279), Expect = 9e-28
 Identities = 48/320 (15%), Positives = 86/320 (26%), Gaps = 88/320 (27%)

Query: 3   ADVNATNKEGIT-LFQQA------IVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT 55
           A            +F          + S  P  +   +R  +     P+ GK+CL  A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 56  K----NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
                    + LLL+     +++    N                        A+      
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVN------------------------ASYTDSYY 99

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKN--------------HQGYNALHVA---- 153
           +G T LHIA    N  +V +L+++GA  +                 + G   L +A    
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 154 ----VGILLRKG---ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
               V  LL+     ADI+  ++ G T                           V   + 
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHAL----------------------VEVADN 197

Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
                  +  + N        +          ++   T L +A   G + ++ ++L    
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257

Query: 267 CVDSLQFIHSPLHLAIEKQH 286
                       H A    H
Sbjct: 258 HEP------ECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.8 bits (223), Expect = 3e-20
 Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 38/184 (20%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN-------------DPFPDDGKS 48
           +A    +  +G T    AI      +  LL E GA++               P    G+ 
Sbjct: 91  NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL 150

Query: 49  CLHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEI------ 98
            L +AA  N + +V+ LL+      D++A D++GNTVLH +  +        +       
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 99  --------LKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNAL 150
                   L        I N++G TPL +AA +G   ++  ++    H            
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECR 263

Query: 151 HVAV 154
           H A 
Sbjct: 264 HAAA 267

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  130 bits (328), Expect = 5e-34
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK-DDENKTPLHIAIES 355
           NN++ N N++G ++      V    S    +         N+N+  D+   TPLH     
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVS-FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141

Query: 356 QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG----YVAIPNLIRH-GANVNARNKYA 410
              + V  LVKHG++    DN G+  L  AV++           L+ +    +   +   
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201

Query: 411 KTPLHIAVEQKNMSA------------LNYLLEHGAQVDARTQLGKDPLYIA----VEMH 454
           +T LH  +    M+             + ++++   +        K+          +  
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
            L  ++        +N+ D  G T L++A ++ N++I++ LL   AD           G 
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK----SGL 317

Query: 515 TPLHLAVES 523
            P+      
Sbjct: 318 RPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  115 bits (290), Expect = 9e-29
 Identities = 52/374 (13%), Positives = 101/374 (27%), Gaps = 82/374 (21%)

Query: 16  FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVD 75
                +SS   I K L     N N+           +   +   +   L   + + N+  
Sbjct: 34  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 93

Query: 76  NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKEGDTPLHIAARTGNYKMVRVLID 134
              N       S  +      +     + N+NI  ++ G+TPLH      N ++V+ L+ 
Sbjct: 94  GSSNQQQQ-HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 135 HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
           HG+                         +    +N G++    A +  N           
Sbjct: 153 HGS-------------------------NRLYGDNMGESCLVKAVKSVN----------- 176

Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
                   ++                      L+      +  +D + +T L   +    
Sbjct: 177 -------NYD----------------SGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213

Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL 314
           +                         A  K ++ I+   + +  N    +        P 
Sbjct: 214 MT---------------------GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI 374
               +RK                +N +D    T L+IA        V  L+ +GAD  + 
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 375 DNQGQMPLHIAVQN 388
           +  G  P+      
Sbjct: 313 NKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  115 bits (289), Expect = 1e-28
 Identities = 42/291 (14%), Positives = 90/291 (30%), Gaps = 29/291 (9%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
            + N    +     Q+ +      +   L    +N N       +   H++    ++ + 
Sbjct: 54  VNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113

Query: 62  RLLLEYNVDVNA-VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
                  +++N  VD  GNT LH   +        V+ L  + +N    +  G++ L  A
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLH-WLTSIANLEL-VKHLVKHGSNRLYGDNMGESCLVKA 171

Query: 121 ARTGNYK----MVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQ 176
            ++ N         +L         ++      LH  +      G     +         
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY------- 224

Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK---GA 233
                     +++ + + V  +                        + ++ +  K     
Sbjct: 225 ----------LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIE 283
            ++A+D    T L+IA   G++ IV+ LLD+GA           P+     
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  111 bits (278), Expect = 4e-27
 Identities = 37/278 (13%), Positives = 90/278 (32%), Gaps = 48/278 (17%)

Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
           ++++    +  +N N +    +A L  ++  +         L    +N N +   +    
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTS--LNNDSSNRNSEGGSSNQQQ 100

Query: 350 -HIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNAR 406
            H++ +S   +          ++N+ +D  G  PLH       + +   L++HG+N    
Sbjct: 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG 160

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF- 465
           +   ++ L  AV+  N                               ++    E LL + 
Sbjct: 161 DNMGESCLVKAVKSVNN------------------------------YDSGTFEALLDYL 190

Query: 466 KANVNSSDQFGRTVLHLAVKIQNV------------AILECLLVNKADINAKIISGIWKG 513
              +   D   RT+LH  +    +             ++  ++  +        +     
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
               +   + +    ++        L+ +D NG+T L+
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.8 bits (230), Expect = 7e-21
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 20/173 (11%)

Query: 3   ADVNATNKEGITLFQQAIVS----SQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI 58
           ++    +  G +   +A+ S           LL      +        ++ LH     + 
Sbjct: 155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSG 213

Query: 59  R-------------LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA--VEILKTNR 103
                         L+  +++                    + + +D     +++     
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI 156
             +N ++  GDT L+IAAR GN  +V  L+D+GA     N  G   +    G+
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  124 bits (315), Expect = 8e-34
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%)

Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
             A  +++       L  A      + V  L++ GA+ N  ++ G+ P+ + +       
Sbjct: 3   PAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA 60

Query: 394 PNLIRHGANVNARNKYAKT-PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
             L+ HGA  N  +    T P+H A  +  +  L  L   GA++D R   G+ P+ +A E
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
           + +  +   L             G     + 
Sbjct: 121 LGHRDVARYLRAAAGGTR-----GSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (310), Expect = 3e-33
 Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 50/195 (25%)

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGI 156
                  +     L  AA  G  + VR L++ GA+    N  G   + V          +
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAEL 62

Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
           LL  GA+ N  +    T                                        +H 
Sbjct: 63  LLLHGAEPNCADPATLTR--------------------------------------PVHD 84

Query: 217 -VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH 275
             R G  + + ++   GA +  +D   +  +D+A E GH  +  +L              
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR----GS 140

Query: 276 SPLHLAIEKQHIAIV 290
           +   +   +    I 
Sbjct: 141 NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  121 bits (307), Expect = 9e-33
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 14/166 (8%)

Query: 365 VKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNM 423
           ++  A  +         L  A   G V     L+  GAN NA N Y + P+ + +   + 
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 424 SALNYLLEHGAQVDARTQLGK-DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
                LL HGA+ +         P++ A     L  +  L +  A ++  D +GR  + L
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV 528
           A ++ +  +   L                       +        +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGS---------NHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  119 bits (302), Expect = 5e-32
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQ-MPLHIAVQ 387
           + LL  GAN N  +   + P+ + +         LL+ HGA+ N  D      P+H A +
Sbjct: 29  RALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAR 87

Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
            G++     L R GA ++ R+ + + P+ +A E  +     YL             G + 
Sbjct: 88  EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNH 142

Query: 447 LYIAVEMHNLSIVE 460
             I        I +
Sbjct: 143 ARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (274), Expect = 3e-28
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
           +   A  +         L  A  +  +  +  LLE GA  +A    G+ P+ + + M + 
Sbjct: 1   MEPAAGSSMEPS--ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 457 SIVEQLLKFKANVNSSDQFGRTV-LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
            + E LL   A  N +D    T  +H A +   +  L  L    A ++ +       G  
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA----WGRL 113

Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           P+ LA E  +  V   L          +     A  
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (258), Expect = 6e-26
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLV 61
           +    ++ +        A    +    + L E GAN N P    G+  + +    + R+ 
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMMMGSARVA 60

Query: 62  RLLLEYNVDVNAVDNLGNTV-LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
            LLL +  + N  D    T  +H  A+ +    T + +L    A +++++  G  P+ +A
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVH-DAAREGFLDT-LVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
              G+  + R L      T   NH   +A  
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  123 bits (312), Expect = 1e-33
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 1/135 (0%)

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
              +++    +   L  A      + V  L++ GAD N ++  G+ P+ + +        
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAE 61

Query: 395 NLIRHGANVNARNKYAKT-PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
            L+ HGA  N  +    T P+H A  +  +  L  L   GA++D     G+ P+ +A E 
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 454 HNLSIVEQLLKFKAN 468
            +  I   L     +
Sbjct: 122 GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  123 bits (311), Expect = 2e-33
 Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 46/171 (26%)

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGI 156
             +++     D  L  AA  G  + VR L++ GA     N  G   + V          +
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAEL 62

Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
           LL  GA+ N  +    T                                        +H 
Sbjct: 63  LLLHGAEPNCADPATLTR--------------------------------------PVHD 84

Query: 217 -VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
             R G  + + ++   GA +   D   +  +D+A E GH  I  +L     
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  119 bits (301), Expect = 3e-32
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 3/136 (2%)

Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
              ++++       L  A   G V     L+  GA+ NA N++ + P+ + +   +    
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 427 NYLLEHGAQVDARTQLGK-DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
             LL HGA+ +         P++ A     L  +  L +  A ++  D +GR  + LA +
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 486 IQNVAILECLLVNKAD 501
             +  I   L     D
Sbjct: 121 QGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  104 bits (263), Expect = 8e-27
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
             ++            A    Q    + L E GA+ N      G+  + +    + ++  
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMGSAQVAE 61

Query: 63  LLLEYNVDVNAVDNLGNTV-LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           LLL +  + N  D    T  +H  A+ +    T + +L    A +++ +  G  P+ +A 
Sbjct: 62  LLLLHGAEPNCADPATLTRPVH-DAAREGFLDT-LVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 122 RTGNYKMVRVLIDHGA 137
             G+  + R L     
Sbjct: 120 EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  104 bits (262), Expect = 8e-27
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
              ++     +   L  A  +  +  +  LLE GA  +A  + G+ P+ + +      + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVA 60

Query: 460 EQLLKFKANVNSSDQFGRTV-LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
           E LL   A  N +D    T  +H A +   +  L  L    A ++         G  P+ 
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA----WGRLPVD 116

Query: 519 LAVESNNEAVINKLLDYNPD 538
           LA E  +  +   L     D
Sbjct: 117 LAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (253), Expect = 2e-25
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 50/174 (28%)

Query: 70  DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
            ++ +    +  L   A+ + +  T V  L    A+ N  N+ G  P+ +    G+ ++ 
Sbjct: 4   GIHMLGGSSDAGLA-TAAARGQVET-VRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 130 RVLIDHGAHTECKNHQGY-NALHVA--------VGILLRKGADINVENNFGKTAFQMAYE 180
            +L+ HGA   C +       +H A        + +L R GA ++V + +G+    +A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA-- 118

Query: 181 MKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
                                                  GH++  + +     +
Sbjct: 119 ------------------------------------EEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
              +H         L  A   G ++ V  LL+ GA  ++L +F   P+ + +      + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 291 QLLLRRNNNNININTKGPTNK-APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
           +LLL    +    N   P     P+H   +    +T     L   GA ++V D   + P+
Sbjct: 61  ELLL---LHGAEPNCADPATLTRPVHDAAREGFLDTL--VVLHRAGARLDVCDAWGRLPV 115

Query: 350 HIAIESQCWDAVSLLVKHGAD 370
            +A E    D    L     D
Sbjct: 116 DLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
             I+    S        L  A        + +LL+   D +  ++ G   + 
Sbjct: 3   PGIHMLGGSS----DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ 50

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  118 bits (299), Expect = 8e-32
 Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ 356
           +++  ++          L    +    +    + L+ +GA+VN KD+   TPL++A    
Sbjct: 8   HHHGSDLGK-------KLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHG 58

Query: 357 CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLH 415
             + V +L+K+GADVN +D  G  PLH+A   G++ I   L++HGA+VNA++K+ KT   
Sbjct: 59  HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118

Query: 416 IAVEQKNMSALNYLLEH 432
           I++   N      L + 
Sbjct: 119 ISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (275), Expect = 1e-28
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
              HG+D+          L  A + G       L+ +GA+VNA+++Y  TPL++A    +
Sbjct: 7   HHHHGSDLGK-------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59

Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
           +  +  LL++GA V+A   +G  PL++A  + +L I E LLK  A+VN+ D+FG+T   +
Sbjct: 60  LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

Query: 483 AVKIQNVAILECLL 496
           ++   N  + E L 
Sbjct: 120 SIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (265), Expect = 4e-27
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
              HG+++          L  A        +  L+ +GA V+A+ + G  PLY+A    +
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IVE LLK  A+VN+ D  G T LHLA  I ++ I E LL + AD+NA+       G T
Sbjct: 60  LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK----FGKT 115

Query: 516 PLHLAVESNNEAVINKLLDYN 536
              +++ + NE +   L   N
Sbjct: 116 AFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (264), Expect = 6e-27
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 49/171 (28%)

Query: 104 ANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
           ++ +  +  +    L  AAR G    VR+L+ +GA    K+  G   L++A        V
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
            +LL+ GAD+N  +  G T                                        L
Sbjct: 64  EVLLKNGADVNAVDAIGFTP---------------------------------------L 84

Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
           HL    GH    +++L+ GA+V+A+D+  KTA DI++ +G+  + E L   
Sbjct: 85  HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  100 bits (251), Expect = 3e-25
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 34  RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
           RG++ +     D    L  AA       VR+L+    DVNA D  G T L+   +    +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 93  PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              VE+L  N A+VN  +  G TPLH+AA  G+ ++  VL+ HGA    ++  G  A  +
Sbjct: 62  --IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

Query: 153 AV 154
           ++
Sbjct: 120 SI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 94.0 bits (235), Expect = 4e-23
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 40/156 (25%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           L    R G  + V++++  GA+V+AKD+   T L +A  HGHL+IVE LL +GA V+++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
               +PLHLA    H+ I ++LL+                                    
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLK------------------------------------ 101

Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
             HGA+VN +D   KT   I+I +   D   +L K 
Sbjct: 102 --HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
           ++   HG+  D         L  A        V  L+   A+VN+ D++G T L+LA   
Sbjct: 5   HHHHHHGS--DLGK-----KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNG 546
            ++ I+E LL N AD+NA    G    +TPLHLA    +  +   LL +  D++ +DK G
Sbjct: 58  GHLEIVEVLLKNGADVNAVDAIG----FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113

Query: 547 NTALH 551
            TA  
Sbjct: 114 KTAFD 118

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
             ++L   GA++N  D   + G + L++A     + +V +LL+   DVNAVD +G T LH
Sbjct: 29  EVRILMANGADVNAKD---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85

Query: 84  TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
             A I   +    E+L  + A+VN ++K G T   I+   GN  +  +L   
Sbjct: 86  LAAFIGHLE--IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
           ADVNA +  G T    A       IA++L + GA++N  D     GK+   I+       
Sbjct: 71  ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD---KFGKTAFDISIGNGNED 127

Query: 60  LVRLLLEYN 68
           L  +L + N
Sbjct: 128 LAEILQKLN 136

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  118 bits (298), Expect = 8e-32
 Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
           PLHL  +         K LL  GA+VN KD   +TPLH+A  +   + V LL++ GADVN
Sbjct: 5   PLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
             D  G+ PLH+A +NG++ +   L+  GA+VNA++K  +TPLH+A    ++  +  LLE
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

Query: 432 HGA 434
            GA
Sbjct: 123 AGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  116 bits (294), Expect = 2e-31
 Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
           +TPLH+A  +   + V LL++ GADVN  D  G+ PLH+A +NG++ +   L+  GA+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           A++K  +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

Query: 465 FKA 467
             A
Sbjct: 123 AGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  113 bits (285), Expect = 5e-30
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 46/162 (28%)

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
           G TPLH+AAR G+ ++V++L++ GA    K+  G   LH+A        V +LL  GAD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
           N ++  G+T   +A                                       RNGH   
Sbjct: 62  NAKDKNGRTPLHLA--------------------------------------ARNGHLEV 83

Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           VKL+LE GA+V+AKD+  +T L +A  +GHL++V+ LL+ GA
Sbjct: 84  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  106 bits (268), Expect = 1e-27
 Identities = 48/124 (38%), Positives = 82/124 (66%), Gaps = 1/124 (0%)

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
           G+ PLH+A +NG++ +   L+  GA+VNA++K  +TPLH+A    ++  +  LLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
           +A+ + G+ PL++A    +L +V+ LL+  A+VN+ D+ GRT LHLA +  ++ +++ LL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 497 VNKA 500
              A
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  104 bits (263), Expect = 6e-27
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 40/161 (24%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
           +T L +A  +GHL++V+ LL+ GA V++  +   +PLHLA    H+ +V+LLL       
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------ 56

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                            GA+VN KD   +TPLH+A  +   + V
Sbjct: 57  --------------------------------AGADVNAKDKNGRTPLHLAARNGHLEVV 84

Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA 401
            LL++ GADVN  D  G+ PLH+A +NG++ +   L+  GA
Sbjct: 85  KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  101 bits (254), Expect = 1e-25
 Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 11/127 (8%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           +G++ LH+AA    + +V+LLLE   DVNA D  G T LH +A+        V++L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH-LAARNGHLEV-VKLLLEAG 58

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
           A+VN K+K G TPLH+AAR G+ ++V++L++ GA    K+  G   LH+A        V 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

Query: 156 ILLRKGA 162
           +LL  GA
Sbjct: 119 LLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 8/115 (6%)

Query: 27  IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
           + KLL E GA++N  D    +G++ LH+AA    + +V+LLLE   DVNA D  G T LH
Sbjct: 17  VVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 73

Query: 84  TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
            +A+        V++L    A+VN K+K G TPLH+AAR G+ ++V++L++ GA+
Sbjct: 74  -LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.0 bits (243), Expect = 3e-24
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 40/158 (25%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           LHL  RNGH   VKL+LE GA+V+AKD+  +T L +A  +GHL++V+ LL+ GA V++  
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
           +   +PLHLA    H+ +V+LLL                                     
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLE------------------------------------ 89

Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
              GA+VN KD   +TPLH+A  +   + V LL++ GA
Sbjct: 90  --AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.0 bits (243), Expect = 3e-24
 Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 4/125 (3%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+  A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
           + D+ GRT LHLA +  ++ +++ LL   AD+NAK       G TPLHLA  + +  V+ 
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVK 118

Query: 531 KLLDY 535
            LL+ 
Sbjct: 119 LLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.0 bits (230), Expect = 1e-22
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 10/125 (8%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
           G T LH +A+        V++L    A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2   GRTPLH-LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
               K+  G   LH+A        V +LL  GAD+N ++  G+T   +A    +   ++L
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 190 FLKYG 194
            L+ G
Sbjct: 120 LLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 89.7 bits (224), Expect = 1e-21
 Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G+ PL++A    +L +V+ LL+  A+VN+ D+ GRT LHLA +  ++ +++ LL   AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           NAK  +    G TPLHLA  + +  V+  LL+   D++ KDKNG T LH
Sbjct: 62  NAKDKN----GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  121 bits (304), Expect = 3e-31
 Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 59/278 (21%)

Query: 310 NKAPLHLVVQRKSWN--TTMFKTLLYHGANVNVKDDEN----KTPLHIAIESQCW---DA 360
           N+  L  +V R S +    +   LL H   +  ++       KT L  A+ +      D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 361 VSLLVKHGAD-----------VNVIDNQGQMPLHIAVQNGYVAI-PNLIRHGANVNARNK 408
           + +L+                   +  +GQ  LHIA++         L+  GA+V+A+ +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK---F 465
                                             G+ PL +A   +   IV  L +    
Sbjct: 125 GRFFQPK-------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

Query: 466 KANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADINAKIISGIWK---G 513
           +A++   D  G TVLH  V I +           + + LL+  A +             G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            +PL +A ++    +   ++      ++ D   +   H
Sbjct: 226 LSPLMMAAKTGKIGIFQHII----RREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  114 bits (287), Expect = 6e-29
 Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 67/270 (24%)

Query: 212 LLLHLVRNGHQNA----VKLILEKGANVHAKD----QLCKTALDIAV---EHGHLKIVEF 260
           +L  +V  G  +     +  +L     +  ++       KT L  A+     G    +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 261 LLDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGP 308
           LLD      +++               + LH+AIE++    V+LL+       +++ +  
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV---EKGADVHAQA- 123

Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
                               +   +   +        + PL +A  +     V  L ++G
Sbjct: 124 --------------------RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163

Query: 369 ---ADVNVIDNQGQMPLHIAVQNGYVAIPN----------LIRHGANVNA-------RNK 408
              AD+   D++G   LH  V        N          L+   A +          N 
Sbjct: 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223

Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
              +PL +A +   +    +++       A
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (250), Expect = 6e-24
 Identities = 43/282 (15%), Positives = 71/282 (25%), Gaps = 92/282 (32%)

Query: 27  IAKLLAERGANINDP---FPDDGKSCLHIAATKNIR----LVRLLLEYNVDVNAVDNLGN 79
           +   L      + D     P  GK+CL  A           + +LL+       +    N
Sbjct: 24  LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83

Query: 80  TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-- 137
                                   +        G T LHIA        V +L++ GA  
Sbjct: 84  ------------------------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 138 ------------HTECKNHQGYNALHVA--------VGILLRKG---ADINVENNFGKTA 174
                             + G   L +A        V  L   G   AD+  +++ G T 
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179

Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
                 + +                    EN K                   L+L K A 
Sbjct: 180 LHALVAIAD-----------------NTRENTK------------FVTKMYDLLLIKCAK 210

Query: 235 VHAKDQLC-------KTALDIAVEHGHLKIVEFLLDHGACVD 269
           +     L         + L +A + G + I + ++       
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.2 bits (242), Expect = 8e-23
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 46/230 (20%)

Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL----VRNGHQNAVKLILEKG---------- 232
           +   L +   +      E     G+  L      +  G  + + ++L+            
Sbjct: 25  LSFLLTHKKRLTDEEFREPST--GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82

Query: 233 -ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS---------------LQFIHS 276
            +         +TAL IA+E      VE L++ GA V +                 F   
Sbjct: 83  NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQR-------KSWNTTMFK 329
           PL LA       IV  L    +   ++  +       LH +V           + T M+ 
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 330 TLLYHGANVN-------VKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
            LL   A +        + +++  +PL +A ++        +++      
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 32/178 (17%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN-------------DPFPDDGKS 48
           ++        G T    AI        +LL E+GA+++               +   G+ 
Sbjct: 83  NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 49  CLHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASI-------KTRDPTAVE 97
            L +AA  N   +V  L E      D+   D+ GNTVLH + +I               +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 98  ILKTNRANVN-------IKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGY 147
           +L    A +        + N +G +PL +AA+TG   + + +I          +H  +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 443 GKDPLYIAVEMHN----LSIVEQLLKFKANVNSSD----QFGRTVLHLAVKIQN------ 488
            +  L+  V   +      ++  LL  K  +   +      G+T L  A+   +      
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 489 ----VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
               + I E     +  IN+      ++G T LH+A+E   +  +  L++   D+  + +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 545 NGNTALHPS 553
                    
Sbjct: 125 GRFFQPKDE 133

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  119 bits (300), Expect = 1e-30
 Identities = 53/285 (18%), Positives = 96/285 (33%), Gaps = 67/285 (23%)

Query: 213 LLHLVRNGHQNAVKLILEK--------GANVHAKDQLCKTALDIAV---EHGHLKIVEFL 261
           L  +V  G    +  +LE           + + +    KT L  AV   + G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 262 LDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPT 309
           L       + + +            HS LH+AIEK+ +  V+LL+    N  +++ +   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE---NGADVHLRACG 122

Query: 310 NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG- 368
                H              T  Y G          + PL +A  ++ WD V+ L+++  
Sbjct: 123 RFFQKHQ------------GTCFYFG----------ELPLSLAACTKQWDVVTYLLENPH 160

Query: 369 --ADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
             A +   D+ G   LH  V                + A N    + L I +    +   
Sbjct: 161 QPASLEATDSLGNTVLHALV----------------MIADNSPENSALVIHMYDGLLQMG 204

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             L       +     G  PL +A +   + I   +L+ + +  +
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  118 bits (298), Expect = 2e-30
 Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 51/274 (18%)

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHG--GQLLLHL----VRNGHQN 223
           F +              +   L+Y     + +       G  G+  L      +++G   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 224 AVKLILEKG-----------ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD--- 269
            +  +L+             A    +     +AL IA+E   L+ V+ L+++GA V    
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 270 -----------SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
                         F   PL LA   +   +V  LL   +   ++          LH   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA-- 178

Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378
                              +   +    + L I +        + L        + ++QG
Sbjct: 179 -----------------LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221

Query: 379 QMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
             PL +A + G + I   +++   +  A + +  
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  117 bits (295), Expect = 4e-30
 Identities = 44/250 (17%), Positives = 81/250 (32%), Gaps = 59/250 (23%)

Query: 333 YHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLVKHG-----------ADVNVIDNQG 378
           Y   +   +    KT L  A+ +        +  L++             A       QG
Sbjct: 31  YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQG 90

Query: 379 QMPLHIAVQNGYVAIPN-LIRHGANVNARN-------------KYAKTPLHIAVEQKNMS 424
              LHIA++   +     L+ +GA+V+ R               + + PL +A   K   
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 425 ALNYLLEHG---AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
            + YLLE+    A ++A   LG   L+  V                 + + +    + L 
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALV-----------------MIADNSPENSALV 193

Query: 482 LAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
           + +    + +   L                +G TPL LA +     +   +L        
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNH----QGLTPLKLAAKEGKIEIFRHILQ------- 242

Query: 542 KDKNGNTALH 551
           ++ +G  A H
Sbjct: 243 REFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  116 bits (291), Expect = 1e-29
 Identities = 53/267 (19%), Positives = 83/267 (31%), Gaps = 51/267 (19%)

Query: 273 FIHSPLHLAIEKQHIAIVQLLL-----RRNNNNININTKGPTNKAPLHLVVQRKSWNTT- 326
           F    L   + +     +  LL            +  T+G T K  L   V         
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 327 MFKTLLYHG-----------ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
               LL              A    +  +  + LHIAIE +    V LLV++GADV++  
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 376 N-------------QGQMPLHIAVQNGYVAIPN-LIRHG---ANVNARNKYAKTPLHIAV 418
                          G++PL +A       +   L+ +    A++ A +    T LH  V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
                            + A        L I +    L +  +L         S+  G T
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

Query: 479 VLHLAVKIQNVAILECLLVNKADINAK 505
            L LA K   + I   +L  +    A 
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (274), Expect = 4e-27
 Identities = 40/271 (14%), Positives = 75/271 (27%), Gaps = 69/271 (25%)

Query: 46  GKSCLHIAATK-NIRLVRLLLEY--------NVDVNAVDNLGNTVLHTVASIKTRD--PT 94
            +  L    ++     +  LLEY                + G T L   A +  +D    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNA 60

Query: 95  AVEIL-----------KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA------ 137
            +  L               A    +  +G + LHIA    + + V++L+++GA      
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 138 -------HTECKNHQGYNALHVA--------VGILLRKG---ADINVENNFGKTAFQMAY 179
                  H     + G   L +A        V  LL      A +   ++ G T      
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL- 179

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239
                                V   +       L+  + +G       +          +
Sbjct: 180 ---------------------VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218

Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
               T L +A + G ++I   +L       +
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.3 bits (245), Expect = 3e-23
 Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 30/175 (17%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN------------DPFPDDGKSC 49
           +A       +G +    AI        KLL E GA+++                  G+  
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 50  LHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASI--KTRDPTA-------- 95
           L +AA      +V  LLE       + A D+LGNTVLH +  I   + + +A        
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 96  ----VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
                  L        I N +G TPL +AA+ G  ++ R ++         +H  
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 409 YAKTPLHIAVEQKNMSALNYLLEH--------GAQVDARTQLGKDPLYIAVEMHN---LS 457
           + +  L   V +     L  LLE+                  GK  L  AV        +
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 458 IVEQLLKF-----------KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
            +  LL+             A        G + LH+A++ +++  ++ L+ N AD++ + 
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 507 ISGIWK---------GYTPLHLAVESNNEAVINKLLDYNP---DLDVKDKNGNTALH 551
               ++         G  PL LA  +    V+  LL+       L+  D  GNT LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 18/128 (14%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKF--------KANVNSSDQFGRTVLHLAVKIQN---VAI 491
            +D L+  V       +  LL++          +  +    G+T L  AV        A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 492 LECLLVNKAD-------INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
           +  LL    D       +NA+     ++G++ LH+A+E  +   +  L++   D+ ++  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 545 NGNTALHP 552
                 H 
Sbjct: 122 GRFFQKHQ 129

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (274), Expect = 1e-28
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNA 405
                A+++   D V   V  G DVN     G+ PLH A   G + I   L+  GA++NA
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
            +K+  TPL  AV + ++S +  LL  GA    +   G             ++++
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  102 bits (257), Expect = 3e-26
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           K  +  G +VN   +  + PLH A +    + +  L+  GAD+N  D     PL  AV  
Sbjct: 24  KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83

Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQ 420
           G+V+    L+  GA+   +     T       Q
Sbjct: 84  GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (255), Expect = 6e-26
 Identities = 32/159 (20%), Positives = 45/159 (28%), Gaps = 46/159 (28%)

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
                D     A + G+   V+  +  G         G   LH A        +  LL K
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
           GADIN  +    T    A                                      V  G
Sbjct: 63  GADINAPDKHHITPLLSA--------------------------------------VYEG 84

Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
           H + VKL+L KGA+   K     TA +         +++
Sbjct: 85  HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 97.5 bits (244), Expect = 2e-24
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 374 IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           + +        A++NG +      +  G +VN   +  + PLH A +   +  L +LL  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
           GA ++A  +    PL  AV   ++S V+ LL   A+       G T           A+L
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

Query: 493 E 493
           +
Sbjct: 123 Q 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.9 bits (240), Expect = 7e-24
 Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 39/153 (25%)

Query: 242 CKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
           C      A+++G L  V+  +  G  V+  L+    PLH A +   + I++ LL      
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----- 61

Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
                                             GA++N  D  + TPL  A+       
Sbjct: 62  ---------------------------------KGADINAPDKHHITPLLSAVYEGHVSC 88

Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
           V LL+  GAD  V    G             A+
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.6 bits (234), Expect = 4e-23
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
                   A     +  V+  +    DVN     G   LH  A+   +    +E L    
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLH-YAADCGQLEI-LEFLLLKG 63

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
           A++N  +K   TPL  A   G+   V++L+  GA    K   G  A    
Sbjct: 64  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.8 bits (232), Expect = 8e-23
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
                       A++  ++  +   +  G  V+   + G+ PL+ A +   L I+E LL 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
             A++N+ D+   T L  AV   +V+ ++ LL   AD   K       G T         
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP----DGLTAFEATDNQA 117

Query: 525 NEAVI 529
            +A++
Sbjct: 118 IKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.5 bits (231), Expect = 9e-23
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 73  AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
            + ++ +      A         V+       +VN   + G  PLH AA  G  +++  L
Sbjct: 2   PLGSMCDKEFM-WALKNGDLDE-VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 133 IDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMA 178
           +  GA     +      L  A        V +LL KGAD  V+   G TAF+  
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 40/141 (28%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
               ++NG  + VK  + KG +V+   +  +  L  A + G L+I+EFLL  GA +++  
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
           +   +PL  A+ + H++ V+LLL                                     
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLS------------------------------------ 94

Query: 332 LYHGANVNVKDDENKTPLHIA 352
              GA+  VK  +  T     
Sbjct: 95  --KGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.8 bits (219), Expect = 5e-21
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
                  A++  +L  V+  +    +VN + + GR  LH A     + ILE LL+  ADI
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           NA          TPL  AV   + + +  LL    D  VK  +G TA  
Sbjct: 67  NAPDKHH----ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 7   ATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRL 63
                    F  A+ +      K    +G ++N      + G+  LH AA    + ++  
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL---EGGRKPLHYAADCGQLEILEF 58

Query: 64  LLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART 123
           LL    D+NA D    T L   A  +      V++L +  A+  +K  +G T        
Sbjct: 59  LLLKGADINAPDKHHITPLL-SAVYEGHVSC-VKLLLSKGADKTVKGPDGLTAFEATDNQ 116

Query: 124 G 124
            
Sbjct: 117 A 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.9 bits (105), Expect = 9e-06
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
           AD+NA +K  IT    A+        KLL  +GA+         DG +       + I+ 
Sbjct: 64  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG---PDGLTAFEATDNQAIKA 120

Query: 61  V 61
           +
Sbjct: 121 L 121

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  106 bits (267), Expect = 1e-27
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 301 ININTK-GPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
               +K G T   PLH   +         K LL  GA+VN +  +  TPLH+A ++   +
Sbjct: 2   HMWGSKDGNT---PLHNAAKNGHAEEV--KKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLH 415
            V LL+  GADVN     G  P H+A +NG+  I   L   GA+VNAR+  +    H
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  105 bits (266), Expect = 1e-27
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
           G         G  PLH A +NG+      L+  GA+VNAR+K   TPLH+A +  +   +
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
             LL  GA V+AR++ G  P ++A +  +  IV+ L    A+VN+         H
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.8 bits (250), Expect = 2e-25
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 35  GANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDP 93
           G         DG + LH AA       V+ LL    DVNA    GNT LH +A+      
Sbjct: 1   GHMWGS---KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLH-LAAKNGHAE 56

Query: 94  TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
             V++L    A+VN ++K+G+TP H+A + G++++V++L   GA    ++    +  H
Sbjct: 57  I-VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.1 bits (238), Expect = 1e-23
 Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 41/153 (26%)

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
           G    +KD    T L  A ++GH + V+ LL  GA V++  +  ++PLHLA +  H  IV
Sbjct: 1   GHMWGSKDG--NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
           +LLL                                        GA+VN +  +  TP H
Sbjct: 59  KLLLA--------------------------------------KGADVNARSKDGNTPEH 80

Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
           +A ++   + V LL   GADVN          H
Sbjct: 81  LAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.4 bits (231), Expect = 9e-23
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
           G      +K   TPLH A +  +   +  LL  GA V+AR++ G  PL++A +  +  IV
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
           + LL   A+VN+  + G T  HLA K  +  I++ L    AD+NA+     W      H
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR----SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.9 bits (227), Expect = 3e-22
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G  PL+ A +  +   V++LL   A+VN+  + G T LHLA K  +  I++ LL   AD+
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           NA+       G TP HLA ++ +  ++  L     D++ +    +   H
Sbjct: 69  NARSK----DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.5 bits (226), Expect = 4e-22
 Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 48/149 (32%)

Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILL 158
              +K+G+TPLH AA+ G+ + V+ L+  GA    ++  G   LH+A        V +LL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
            KGAD+N  +  G T                                         HL  
Sbjct: 63  AKGADVNARSKDGNTP---------------------------------------EHLAK 83

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTAL 246
           +NGH   VKL+  KGA+V+A+        
Sbjct: 84  KNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 40/139 (28%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           LH   +NGH   VK +L KGA+V+A+ +   T L +A ++GH +IV+ LL  GA V++  
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
           +  ++P HLA +  H  IV+LL                                      
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDA------------------------------------ 96

Query: 332 LYHGANVNVKDDENKTPLH 350
              GA+VN +   +    H
Sbjct: 97  --KGADVNARSWGSSHHHH 113

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 9e-24
 Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
           +TPLH+A  +   + V LL++ GADVN  D  G+ PLH+A +NG++ +   L+  GA+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           A++K  +TPLH+A    ++  +  LLE GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.5 bits (213), Expect = 1e-20
 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 45  DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           +G++ LH+AA    + +V+LLLE   DVNA D  G T LH +A+        V++L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH-LAARNGHLEV-VKLLLEAG 58

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
           A+VN K+K G TPLH+AAR G+ ++V++L++ GA+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.0 bits (204), Expect = 2e-19
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 65/155 (41%)

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK 172
           G TPLH+AAR G+ ++V++L++ GA                         D+N ++  G+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA-------------------------DVNAKDKNGR 36

Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
           T                                        LHL  RNGH   VKL+LE 
Sbjct: 37  TP---------------------------------------LHLAARNGHLEVVKLLLEA 57

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           GA+V+AKD+  +T L +A  +GHL++V+ LL+ GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 81.2 bits (202), Expect = 5e-19
 Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
           G+ PLH+A +NG++ +   L+  GA+VNA++K  +TPLH+A    ++  +  LLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467
           +A+ + G+ PL++A    +L +V+ LL+  A
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.1 bits (186), Expect = 6e-17
 Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           LHL  RNGH   VKL+LE GA+V+AKD+  +T L +A  +GHL++V+ LL+ GA V++  
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 272 QFIHSPLHLAIEKQHIAIVQLLL 294
           +   +PLHLA    H+ +V+LLL
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.4 bits (179), Expect = 5e-16
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
           G T LH +A+        V++L    A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2   GRTPLH-LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 138 HTECKNHQGYNALHVA--------VGILLRKGA 162
               K+  G   LH+A        V +LL  GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.0 bits (178), Expect = 8e-16
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 39/128 (30%)

Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
           +T L +A  +GHL++V+ LL+ GA V++  +   +PLHLA    H+ +V+LLL       
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------ 56

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                            GA+VN KD   +TPLH+A  +   + V
Sbjct: 57  --------------------------------AGADVNAKDKNGRTPLHLAARNGHLEVV 84

Query: 362 SLLVKHGA 369
            LL++ GA
Sbjct: 85  KLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.8 bits (175), Expect = 2e-15
 Identities = 34/90 (37%), Positives = 58/90 (64%)

Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
           +TPLH+A    ++  +  LLE GA V+A+ + G+ PL++A    +L +V+ LL+  A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
           + D+ GRT LHLA +  ++ +++ LL   A
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 1e-14
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
           G+ PL++A    +L +V+ LL+  A+VN+ D+ GRT LHLA +  ++ +++ LL   AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
           NAK       G TPLHLA  + +  V+  LL+ 
Sbjct: 62  NAKDK----NGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.3 bits (158), Expect = 4e-13
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
           GRT LHLA +  ++ +++ LL   AD+NAK       G TPLHLA  + +  V+  LL+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 536 NPDLDVKDKNGNTALH 551
             D++ KDKNG T LH
Sbjct: 58  GADVNAKDKNGRTPLH 73

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 2e-23
 Identities = 45/397 (11%), Positives = 101/397 (25%), Gaps = 92/397 (23%)

Query: 29  KLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASI 88
            +      N+     +  +  L +      R  + L            +   V       
Sbjct: 51  HIFLPGTKNM-----EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCS 105

Query: 89  KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQ--G 146
              D   + +L T+   V +   E      +AA  G+  ++  L +          Q   
Sbjct: 106 SALD--TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 147 YNALHVA--------VGILLRKGADINVEN--NFGKTAFQMAYEMKNFPAIELFLKYGVN 196
           Y+A  +A        +  L                  AF+ A       A+         
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA-------AVG-------- 208

Query: 197 VEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLK 256
                                  GH N +  +L+    +   +           E+G   
Sbjct: 209 ----------------------RGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKY 239

Query: 257 IVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHL 316
           +  F+  H   +  +   H    L+       +V              ++       L  
Sbjct: 240 VNPFIARHVNRLKEM---HDAFKLSNPDGVFDLVT------------KSECLQGFYMLRN 284

Query: 317 VVQRKSWNTTMFKTLLY--------HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
           +++R   +  +   + +          A       +    L +A+      A +LL+   
Sbjct: 285 LIRRN--DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342

Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
           + + +         +I    G + +    + H  + +
Sbjct: 343 SVLALTKANN---YYINETGGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 2e-23
 Identities = 41/318 (12%), Positives = 82/318 (25%), Gaps = 53/318 (16%)

Query: 192 KYGVNVEQCVCHENVKH--GGQLLLHLVRNGHQNA---VKLILEKGANVHAKDQLCKTAL 246
            Y  N +Q     + K      +       G  +A   + L+L     V         A 
Sbjct: 73  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF 132

Query: 247 DIAVEHGHLKIVEFLLDHGACVDSLQFI---HSPLHLAIEKQHIAIVQLLLRR--NNNNI 301
            +A E+GHL ++  L +              +    LA E  H+ ++  L          
Sbjct: 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
            I  +              +  +  +   LL     +   +          +        
Sbjct: 193 MIQAENYY---AFRWAAVGRG-HHNVINFLLDCPVMLAYAEIHEFEYGEKYV-------N 241

Query: 362 SLLVKHGADVNVIDN--------------------QGQMPLHIAVQNG---------YVA 392
             + +H   +  + +                    QG   L   ++           ++ 
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301

Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
               I+  A        A   L +A+   N  A   LL   + +        +  YI   
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINET 358

Query: 453 MHNLSIVEQLLKFKANVN 470
              L +    L+   + +
Sbjct: 359 GGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (251), Expect = 3e-23
 Identities = 34/242 (14%), Positives = 76/242 (31%), Gaps = 26/242 (10%)

Query: 336 ANVNVKDDENKTPLHIAIESQCW---DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
           ++ + K  +++    +A  + C    D + LL+     V VI  +      +A +NG++ 
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 393 IPN-LIRHGANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD---P 446
           + N L             A+      +A E  ++  LN L E            ++    
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202

Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
            + AV   + +++  LL     +  ++          V       +  L           
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 507 ISGI---------WKGYTPLHLAVESNNEAVINKL--------LDYNPDLDVKDKNGNTA 549
             G+          +G+  L   +  N+E +++ +        +           + N  
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322

Query: 550 LH 551
           L 
Sbjct: 323 LR 324

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 44/348 (12%), Positives = 96/348 (27%), Gaps = 49/348 (14%)

Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF 273
           L L+   ++ A+ + L    N+    QL      + + + H       L   A    ++ 
Sbjct: 39  LSLMTLSYKEAIHIFLPGTKNMEQVRQL------LCLYYAHYNRNAKQLWSDAHKKGIK- 91

Query: 274 IHSPLHLAIE---KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN--TTMF 328
                 +A        +  + LLL    ++  +      N     L     + N    + 
Sbjct: 92  SEVICFVAAITGCSSALDTLCLLL---TSDEIVKVIQAENYQAFRLA----AENGHLHVL 144

Query: 329 KTLLYHGANVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNV--IDNQGQMPLHI 384
             L        +   + +      +A E+     ++ L +         I  +       
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204

Query: 385 -AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
            AV  G+  + N L+     +     +        V         ++  H  ++      
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP-------FIARHVNRLKE---- 253

Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
             D   ++       +V           S    G  +L   ++  +  +L+ +    +  
Sbjct: 254 MHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 503 N----AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNG 546
                A   +        L LA+   N+     LL     L +   N 
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 7/195 (3%)

Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAV 418
           +A+ + +    ++  +       L +   +       L         +++       I  
Sbjct: 48  EAIHIFLPGTKNMEQVRQ----LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG 103

Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF--G 476
               +  L  LL     V            +A E  +L ++ +L +       +      
Sbjct: 104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
                LA +  ++ +L  L          +I      Y     AV   +  VIN LLD  
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 537 PDLDVKDKNGNTALH 551
             L   + +      
Sbjct: 223 VMLAYAEIHEFEYGE 237

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 20/202 (9%), Positives = 41/202 (20%), Gaps = 57/202 (28%)

Query: 3   ADVNATNK--EGITLFQQAIVSSQTPIAKLLAERGANINDP-FPDDGKSCLHIAATKN-- 57
                     E    F+ A  +    +   L E            +       AA     
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHTVAS------------------------------ 87
             ++  LL+  V +   +           +                              
Sbjct: 212 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271

Query: 88  --------------IKTRDPTAVEILKTNR--------ANVNIKNKEGDTPLHIAARTGN 125
                         I+  D   ++ ++           A       + +  L +A R GN
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331

Query: 126 YKMVRVLIDHGAHTECKNHQGY 147
                +L+   +         Y
Sbjct: 332 QGACALLLSIPSVLALTKANNY 353

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 40/150 (26%)

Query: 249 AVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGP 308
              H H      L+  G+ + S   +   L  A        V++L+              
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS--DLGKKLLEAARAGQDDEVRILMA------------- 45

Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
                                    +GA+V  KD    TPLH+A  +   + V LL++ G
Sbjct: 46  -------------------------NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
           ADV   D  G+    I++ NG   +  +++
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 42/148 (28%)

Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
            + H +    ++ +G+++ +        L  A   G    V  L+ +GA V +  +   +
Sbjct: 3   SHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGST 59

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
           PLHLA    H+ +V+LLL                                        GA
Sbjct: 60  PLHLAARNGHLEVVKLLLE--------------------------------------AGA 81

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLL 364
           +V  +D   KT   I+I++   D   +L
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.5 bits (197), Expect = 3e-18
 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 385 AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
              + +    + L+  G+++ +        L  A        +  L+ +GA V A+ + G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
             PL++A    +L +V+ LL+  A+V + D+FG+T   +++   N  + E L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 51/151 (33%)

Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
            +   ++     L+  G+H           L  A        V IL+  GAD+  ++  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILE 230
            T                                        LHL  RNGH   VKL+LE
Sbjct: 58  STP---------------------------------------LHLAARNGHLEVVKLLLE 78

Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
            GA+V A+D+  KTA DI++++G+  + E L
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 27  IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
            +  L  RG+++      D    L  AA       VR+L+    DV A D  G+T LH +
Sbjct: 9   HSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLH-L 63

Query: 86  ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
           A+        V++L    A+V  ++K G T   I+   GN  +  +L
Sbjct: 64  AARNGHLEV-VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 72.6 bits (179), Expect = 7e-16
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTAL 246
               +  G ++            G+ LL   R G  + V++++  GA+V AKD+   T L
Sbjct: 10  SSGLVPRGSHMG--------SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL 61

Query: 247 DIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLL 293
            +A  +GHL++V+ LL+ GA V +  +F  +   ++I+  +  + ++L
Sbjct: 62  HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
            L+  G+ + +        L  A        V  L+   A+V + D+ G T LHLA +  
Sbjct: 12  GLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
           ++ +++ LL   AD+ A+       G T   +++++ NE +   L
Sbjct: 69  HLEVVKLLLEAGADVXAQ----DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 6e-14
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
               H+      L+   +++ S        L  A +      +  L+ N AD+ AK    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKD--- 54

Query: 510 IWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
              G TPLHLA  + +  V+  LL+   D+  +DK G TA  
Sbjct: 55  -KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 79.3 bits (195), Expect = 1e-16
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQR-KSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
           L       N +    T    LHL V+     +  +   L+ +  N++ +  +  T LH  
Sbjct: 156 LTEKIPLANGHEPDET---ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212

Query: 353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKT 412
             +   + + LL++  A + + +  G+ PL IA +  +     L+    +        + 
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS-------GRF 265

Query: 413 PLHIAVE 419
             H+ VE
Sbjct: 266 NSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 17/196 (8%)

Query: 289 IVQLLLRRNNNNIN------INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
            + L     N   N      + ++ P    P   ++ RK + T  +    Y         
Sbjct: 69  ELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA 128

Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN------QGQMPLHIAVQNG----YVA 392
            +  +    A++++    +      G D+             +  LH+AV++        
Sbjct: 129 AKLHSLCE-AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187

Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
           +  L+++  N++ +     T LH      N   L  LL   A ++   + G+ PL IA  
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247

Query: 453 MHNLSIVEQLLKFKAN 468
           + +    E L +  + 
Sbjct: 248 LKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.4 bits (172), Expect = 1e-13
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 39  NDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLH-TVASIKTR 91
           +        S      T++I  +       VD+     L        T LH  V S+   
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183

Query: 92  DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
               V+ L  N  N++ +  +G T LH    T N + +++L+   A  E  N  G   L 
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

Query: 152 VAV 154
           +A 
Sbjct: 244 IAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 378 GQMPLHIAVQNGYVAIPNLIRHGANVNARNKYA------KTPLHIAVE---QKNMSALNY 428
                          +      G ++  +   A      +T LH+AV    + ++  +++
Sbjct: 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 190

Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
           L+++   +D +T  G   L+      N   ++ LL+ KA++  +++ G T L +A ++++
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250

Query: 489 VAILECLL 496
               E L 
Sbjct: 251 EHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 35  GANINDPFP-----DDGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
           G ++ +  P     +  ++ LH+A       ++ +V  L++ + +++     G+T LH  
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH-- 210

Query: 86  ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
               T +   +++L   +A++ I N+ G+TPL IA R  +     +L 
Sbjct: 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 417 AVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEMHN---LSIVEQLLKFKA 467
           AV+ +++  L      G  +          +  +  L++AV   +   L IV+ L++   
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
           N++     G T LH      N   L+ LL  KA I          G TPL +A    +E 
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA----NESGETPLDIAKRLKHEH 252

Query: 528 VINKLLDY 535
               L   
Sbjct: 253 CEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 450 AVEMHNLSIVEQLLKFKANVNS------SDQFGRTVLHLAVKIQN---VAILECLLVNKA 500
           AV+  ++  + Q      ++          +   T LHLAV+  +   + I++ L+ N  
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           +++ +      KG T LH    ++N   +  LL     +++ +++G T L 
Sbjct: 197 NLDKQTG----KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 126 YKMVRVLIDHGAHTECKNHQGYNALH----VAVGILLRKGADINVENNF------GKTAF 175
           Y   R      A T  K H    A+       +      G D+  +          +TA 
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173

Query: 176 QMAYEMKN---FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
            +A    +      ++  ++   N+++          G   LH      +   +KL+L  
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDK------QTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH 275
            A++   ++  +T LDIA    H    E LL           +H
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEE-LLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 50/147 (34%)

Query: 244 TALDIAVEHG---HLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNN 299
           TAL +AV       L IV+FL+ +   +D       + LH      +   ++LLLR    
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR---- 226

Query: 300 NININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
                                               A++ + ++  +TPL IA   +   
Sbjct: 227 ----------------------------------GKASIEIANESGETPLDIAKRLKHEH 252

Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAV 386
              LL +  +        G+   H+ V
Sbjct: 253 CEELLTQALS--------GRFNSHVHV 271

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 2   DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRL 60
             +++    +G T      ++      KLL    A+I     + G++ L IA   K+   
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHC 253

Query: 61  VRLLLEY 67
             LL + 
Sbjct: 254 EELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 313 PLHLVVQRKSWNTT-MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
            LHL V+  +  +  +   ++ +G +++ K  +  T LH A      D + LL+K  A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252

Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVE 419
             ++  G+  L IA +  +     L+           +A  PLH+   
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQA----QAGTFAF-PLHVDYS 295

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 10/138 (7%)

Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVN------VIDNQGQMPLHIAVQNGYVAIP 394
           +       L  AI ++   +V     +G D              ++ LH+AV+    A  
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206

Query: 395 N----LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
                +I++G +++A+     T LH A        L  LL+  A V    + G+  L IA
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

Query: 451 VEMHNLSIVEQLLKFKAN 468
            + H+    E L + +A 
Sbjct: 267 RKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.5 bits (167), Expect = 7e-13
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 377 QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYA------KTPLHIAVEQKNMSALN--- 427
           + Q           +++     +G +              +  LH+AV+  N ++L    
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD 210

Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
           +++++G  +DA+   G   L+ A   +    ++ LLK +A V + ++ G T L +A K  
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270

Query: 488 NVAILECL 495
           +    E L
Sbjct: 271 HKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 40  DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLHTVASIKTRDP 93
                + +        +++  V        D                VLH    +  +  
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 94  TA-VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              V+ +  N  +++ K  +G+T LH AA       +++L+   A     N  G  AL +
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 153 AV 154
           A 
Sbjct: 266 AR 267

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 27  IAKLLAERGANINDPFPD-----DGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNL 77
           + +  A  G +   P P        +  LH+A       ++ LV  +++    ++A    
Sbjct: 167 VLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD 225

Query: 78  GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
           GNT LH   +     P  +++L   RA V   N+ G+T L IA +  + +   +L  
Sbjct: 226 GNTALH--YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF------GRTVLHLAVKIQN--- 488
            R       L+ A+   +L  V +      +                VLHLAVK+ N   
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
           + +++ ++ N   ++AK       G T LH A   N    +  LL     +   ++ G T
Sbjct: 206 LPLVDFIIQNGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261

Query: 549 ALH 551
           AL 
Sbjct: 262 ALD 264

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN---AVKLILEKG 232
            A   ++  ++      G +  Q +   + +   +L+LHL V+  +Q     V  I++ G
Sbjct: 157 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 216

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA---CVDSLQFIHSPLHLAIEKQHIAI 289
            ++ AK     TAL  A  +     ++ LL   A    V+      + L +A +K H   
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG--ETALDIARKKHHKEC 274

Query: 290 VQLL 293
            +LL
Sbjct: 275 EELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEMHN--- 455
            R       L  A+  +++ ++     +G                +  L++AV++ N   
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L +V+ +++   ++++    G T LH A        L+ LL  +A +     +G     T
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE----T 261

Query: 516 PLHLAVESNN 525
            L +A + ++
Sbjct: 262 ALDIARKKHH 271

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 157 LLRKGADINVENNF------GKTAFQMAYEMKN---FPAIELFLKYGVNVEQCVCHENVK 207
               G D              +    +A ++ N    P ++  ++ G +++         
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA------KA 223

Query: 208 HGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
             G   LH        + +KL+L+  A V   ++  +TALDIA +  H +  E L
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 22  SSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNT 80
            +  P+   + + G +++     DG + LH AA       ++LLL+    V  V+  G T
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261

Query: 81  VLHTVASIKTRDPTAVEILKTNRAN 105
            L    + K       E+L+  +A 
Sbjct: 262 ALDI--ARKKHHKECEELLEQAQAG 284

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.4 bits (169), Expect = 6e-13
 Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 2/138 (1%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           + L  A               +  ++N    G  N  PL       S     F  LL +G
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF--LLQNG 258

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
           ANVN  D   + PLH A          L +K GAD+   D++G+ PL IA++     I  
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318

Query: 396 LIRHGANVNARNKYAKTP 413
           L+R      A     +  
Sbjct: 319 LLRLAKMREAEAAQGQAG 336

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.0 bits (168), Expect = 8e-13
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 377 QGQMPLHIAVQNGYV-AIPNLIRHGANVNARN--KYAKTPLHIAVEQKNMSALNYLLEHG 433
            G +    +     +  + + + HGA+VN  N  +   TPL  A    ++ A  +LL++G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258

Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
           A V+     G+ PL+ A  + +  +    LK  A++ + D  GR  L +A++  N  I+ 
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318

Query: 494 CLL 496
            L 
Sbjct: 319 LLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 386 VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
           V+  ++     IR       R +           +    +L    E  ++       G  
Sbjct: 143 VEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGAL 202

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNS--SDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
               +    +L  +   L   A+VN     Q   T L  A    ++   E LL N A++N
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                    G  PLH A    +  +    L    DL  +D  G   L 
Sbjct: 263 QADS----AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.0 bits (160), Expect = 9e-12
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDART--QLGKDPLYIAVEMHNLSIVEQLLKFKA 467
                  +    ++  +   L HGA V+     Q    PL  A   ++L   E LL+  A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
           NVN +D  GR  LH A  + +  +    L   AD+ A+       G  PL +A+E+ N  
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE----GRDPLTIAMETANAD 315

Query: 528 VINKLLD 534
           ++  L  
Sbjct: 316 IVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.9 bits (152), Expect = 7e-11
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 12  GITLFQQAIVSSQTPIAKLLAERGANINDPFPD-DGKSCLHIAATK-NIRLVRLLLEYNV 69
           G  LF+ +      P        GA++N      D  + L  A    ++     LL+   
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 70  DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
           +VN  D+ G   LH   +          +     A++  ++ EG  PL IA  T N  +V
Sbjct: 260 NVNQADSAGRGPLH--HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

Query: 130 RVL 132
            +L
Sbjct: 318 TLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 41/175 (23%), Positives = 55/175 (31%), Gaps = 42/175 (24%)

Query: 195 VNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAK--DQLCKTALDIAVE 251
              E         H G LL            +   L  GA+V+     Q   T L  A  
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 252 HGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN 310
              L   EFLL +GA V+        PLH A    H  +  L L+               
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK--------------- 289

Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
                                   GA++  +D E + PL IA+E+   D V+LL 
Sbjct: 290 -----------------------RGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 157 LLRKGADIN--VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
            L  GAD+N         T    A    +  A E  L+ G NV Q          G+  L
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ------ADSAGRGPL 272

Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
           H     GH     L L++GA++ A+D   +  L IA+E  +  IV  L  
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 17  QQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDN 76
            +  +  +    +   E  +                    ++  +   L +  DVN V+ 
Sbjct: 172 PKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG 231

Query: 77  L--GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
                T L    +       A E L  N ANVN  +  G  PLH A   G+  +  + + 
Sbjct: 232 GQDNATPLIQ--ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 135 HGAHTECKNHQGYNALHVAV 154
            GA    ++ +G + L +A+
Sbjct: 290 RGADLGARDSEGRDPLTIAM 309

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 53.6 bits (128), Expect = 8e-08
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
                L+         A + +L+ GANV+  D   +  L  A   GH  +    L  GA 
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293

Query: 268 VDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
           + +       PL +A+E  +  IV LL         
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE 329

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 3   ADVNATN--KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIR 59
           ADVN  N  ++  T   QA  ++     + L + GAN+N      G+  LH A    +  
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATILGHTG 282

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGD 114
           L  L L+   D+ A D+ G   L         D   +  L   R     + + GD
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 82/532 (15%), Positives = 154/532 (28%), Gaps = 146/532 (27%)

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD---- 163
           +  +E D   HI            L            +    +   V  +LR        
Sbjct: 46  LSKEEID---HIIMSKDAVSGTLRLFW------TLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 164 -INVENNFGKTAFQMAYEM---KNFPAIELFLKYGVNVEQCV-----CHENVKHGGQLLL 214
            I  E     +     Y     + +   ++F KY V+  Q           ++    +L+
Sbjct: 97  PIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI 274
                G   + K  +   A         +  +D  +         F L+   C       
Sbjct: 156 D----GVLGSGKTWV---ALDVCLSYKVQCKMDFKI---------FWLNLKNC------- 192

Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN-KAPLHLVVQRKS----------- 322
           +SP  +      + ++Q LL + + N    +   +N K  +H +                
Sbjct: 193 NSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 323 -------WNTT---MF----KTLLYHGANVNVKDD-ENKTPLHIAIESQCW-----DAVS 362
                   N      F    K LL       V D     T  HI+++         +  S
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 363 LLVKHGADVNVIDNQGQM----PLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAV 418
           LL+K+  D    D   ++    P  +++      I   IR G          K      +
Sbjct: 306 LLLKY-LDCRPQDLPREVLTTNPRRLSI------IAESIRDGLA---TWDNWKHVNCDKL 355

Query: 419 EQKNMSALNYL--------------LEHGAQVDARTQLG--------KDPLYIAVEMHNL 456
                S+LN L                  A +     L          D + +  ++H  
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKY 414

Query: 457 SIVEQ------------LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA 504
           S+VE+             L+ K  +          LH ++ + +  I +    +  D+  
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLE-----NEYALHRSI-VDHYNIPKTFDSD--DLIP 466

Query: 505 KIISGIWKGYTPLHLAVESNNEAVI---NKLLDYNPDLDVKDKNGNTALHPS 553
             +   +  +   HL    + E +       LD+   L+ K ++ +TA + S
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNAS 517

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 75/474 (15%), Positives = 156/474 (32%), Gaps = 121/474 (25%)

Query: 46  GKSCLHIAATKNIRLVRLLLEYNVD-VNAVDNLGNTVLHTVASIKTRDPTAVEILKT--N 102
           GK+ + +    + + V+  +++ +  +    NL N              T +E+L+    
Sbjct: 162 GKTWVALDVCLSYK-VQCKMDFKIFWL----NLKN---------CNSPETVLEMLQKLLY 207

Query: 103 RANVNIKNKEGDTPLHIAARTGNYKM-VRVLIDHGAHTEC-------KNHQGYNALHVAV 154
           + + N      D   +I  R  + +  +R L+    +  C       +N + +NA +++ 
Sbjct: 208 QIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 155 GILL--RKGADINVENNFGKTAFQMAYEMKNFP---AIELFLKYGVNVE-QCVCHENVKH 208
            ILL  R     +  +    T   + +            L LKY ++   Q +  E V  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPRE-VLT 324

Query: 209 GGQLLLHLV----RNG--------HQNAVKL------------------------ILEKG 232
                L ++    R+G        H N  KL                        +    
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEF----LLDHGACVDSLQFIHSPLHLAIEKQHIA 288
           A++     L     D+      + + +     L++     +S   I S ++L + K  + 
Sbjct: 385 AHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPS-IYLEL-KVKLE 440

Query: 289 IVQLLLRRNNNNININTKGPTNKAPL-------------HLVVQRKSWNTTMFKTLLYHG 335
               L R   ++ NI     ++                 HL         T+F+ +    
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN-----VIDNQGQMPLHIAVQNGY 390
             ++ +  E K    I  +S  W+A   ++     +      + DN    P +  + N  
Sbjct: 498 --LDFRFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAI 548

Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGK 444
             +  L +   N+   +KY    L IA+  ++      + E     +A  Q+ +
Sbjct: 549 --LDFLPKIEENL-ICSKYTDL-LRIALMAED----EAIFE-----EAHKQVQR 589

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 349 LHIAIESQCWDAVSLLVKHGADVN------VIDNQGQMPLHIAVQN---GYVAIPN-LIR 398
           L  AI ++   +V     +G D              ++ LH+AV+      + + + +I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSI 458
           +G +++A+     T LH A        L  LL+  A V    + G+  L IA + H+   
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 459 VEQLLK 464
            E L +
Sbjct: 256 EELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 40  DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLHTVASIKTRDP 93
                + +        +++  V        D                VLH    +  +  
Sbjct: 127 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 186

Query: 94  TA-VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
              V+ +  N  +++ K  +G+T LH AA       +++L+   A     N  G  AL +
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246

Query: 153 AV 154
           A 
Sbjct: 247 AR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSS------DQFGRTVLHLAVKI---QNVAILECLLV 497
           L+ A+   +L  V +      +                VLHLAVK+    ++ +++ ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 498 NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
           N   ++AK       G T LH A   N    +  LL     +   ++ G TAL  +
Sbjct: 196 NGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 382 LHIAVQNGYV-AIPNLIRHGANVNA------RNKYAKTPLHIAVEQKNMSALN---YLLE 431
           L  A+ N  + ++     +G +              +  LH+AV+  N ++L    ++++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI 491
           +G  +DA+   G   L+ A   +    ++ LLK +A V + ++ G T L +A K  +   
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 492 LECL 495
            E L
Sbjct: 256 EELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 414 LHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEM---HNLSIVEQLLK 464
           L  A+  +++ ++     +G                +  L++AV++    +L +V+ +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
              ++++    G T LH A        L+ LL  +A +     +    G T L +A + +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----GETALDIARKKH 251

Query: 525 NE 526
           ++
Sbjct: 252 HK 253

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 35/152 (23%)

Query: 117 LHIAARTGNYKMVRVLIDHGA------HTECKNHQGYNALHVAVGILLRKGADINVENNF 170
           L  A    +   V     +G                   LH+AV +  +           
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185

Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLIL 229
                       + P ++  ++ G +++           G   LH        + +KL+L
Sbjct: 186 ------------SLPLVDFIIQNGGHLDAKAAD------GNTALHYAALYNQPDCLKLLL 227

Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
           +  A V   ++  +TALDIA +  H +  E L
Sbjct: 228 KGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAK------DQLCKTALDIAVEH---GHLKIVEF 260
            Q L   + N    +V      G +              +  L +AV+      L +V+F
Sbjct: 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 192

Query: 261 LLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQ 319
           ++ +G  +D+     ++ LH A        ++LLL+       + T     +  L +  +
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARK 249

Query: 320 RKS 322
           +  
Sbjct: 250 KHH 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	553
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.7e-68  Score=511.66  Aligned_cols=396  Identities=32%  Similarity=0.434  Sum_probs=303.6

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCC
Q psy11230          1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGN   79 (553)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~   79 (553)
                      .||++|.++..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   81 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ   81 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            48999999999999999999999999999999999999887 8899999999999999 999999999999999999999


Q ss_pred             cHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHh
Q psy11230         80 TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR  159 (553)
Q Consensus        80 t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~  159 (553)
                      ||||+|+..  |+.+++++|+++|++++..+..|.||||+|+..|+.++|++|++.+++.+..+..|             
T Consensus        82 t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-------------  146 (437)
T 1n11_A           82 TPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-------------  146 (437)
T ss_dssp             CHHHHHHHH--TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS-------------
T ss_pred             CHHHHHHHC--CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC-------------
Confidence            999999999  99999999999999999999999999999999999999999999988776554444             


Q ss_pred             CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCC
Q psy11230        160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD  239 (553)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~  239 (553)
                                  .|||++|+..                                      |+.+++++|+++|.+++..+
T Consensus       147 ------------~t~L~~A~~~--------------------------------------g~~~~v~~Ll~~g~~~~~~~  176 (437)
T 1n11_A          147 ------------FTPLHVAAKY--------------------------------------GKVRVAELLLERDAHPNAAG  176 (437)
T ss_dssp             ------------CCHHHHHHHT--------------------------------------TCHHHHHHHHHTTCCTTCCC
T ss_pred             ------------CCHHHHHHHc--------------------------------------CCHHHHHHHHhCCCCCCCCC
Confidence                        3344444444                                      55555666666666666677


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHh
Q psy11230        240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQ  319 (553)
Q Consensus       240 ~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (553)
                      ..|.|||++|+..|+.+++++|++++.++..                                                 
T Consensus       177 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------------------------------------------------  207 (437)
T 1n11_A          177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-------------------------------------------------  207 (437)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-------------------------------------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------------------------------------------
Confidence            7788888888888888777777776554322                                                 


Q ss_pred             ccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHH
Q psy11230        320 RKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIR  398 (553)
Q Consensus       320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~  398 (553)
                                           .+..+.|||++|+..|+.+++++|++.|++++..+..|.|||+.|+..++.+++ .|+.
T Consensus       208 ---------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  266 (437)
T 1n11_A          208 ---------------------PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS  266 (437)
T ss_dssp             ---------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ---------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence                                 223445556666666666666666666666555555566666666666666555 4445


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy11230        399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT  478 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t  478 (553)
                      ++.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus       267 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  346 (437)
T 1n11_A          267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS  346 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            56666666667777788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      |||+|+.+|+.+++++|+++|++++..+.    .|.|||++|.+.|+.+++++|....
T Consensus       347 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~----~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          347 PLHQAAQQGHTDIVTLLLKNGASPNEVSS----DGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCS----SSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHCChHHHHHHHHHCcCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhcc
Confidence            88888888888888888888888887766    7888888888888888888776554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-66  Score=499.50  Aligned_cols=380  Identities=29%  Similarity=0.436  Sum_probs=302.1

Q ss_pred             cCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC
Q psy11230         34 RGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE  112 (553)
Q Consensus        34 ~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~  112 (553)
                      .|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|.||||+|+..  |+.+++++|++.|++++.++..
T Consensus         3 ~g~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~   79 (437)
T 1n11_A            3 PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTEVAKYLLQNKAKVNAKAKD   79 (437)
T ss_dssp             -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH--TCHHHHHHHHHHTCCSSCCCTT
T ss_pred             CCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCC
Confidence            35555554 6666666666666666 666666666666666666666666666666  6666666666666666666666


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy11230        113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK  192 (553)
Q Consensus       113 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~  192 (553)
                      |+||||+|+..|+.++|++|+++|++++..+..|.||                         |+                
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-------------------------L~----------------  118 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP-------------------------LH----------------  118 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH-------------------------HH----------------
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH-------------------------HH----------------
Confidence            6666666666666666666666666655444333322                         22                


Q ss_pred             cCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q psy11230        193 YGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ  272 (553)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~  272 (553)
                                            .|+..|+.+++++|++.+.+.+..+..|.|||++|+..|+.+++++|+++|.      
T Consensus       119 ----------------------~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------  170 (437)
T 1n11_A          119 ----------------------IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA------  170 (437)
T ss_dssp             ----------------------HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred             ----------------------HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------
Confidence                                  2333444455555555555555566667777777777777766666666544      


Q ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy11230        273 FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA  352 (553)
Q Consensus       273 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  352 (553)
                                                                                      +++..+..|.|||++|
T Consensus       171 ----------------------------------------------------------------~~~~~~~~g~t~L~~A  186 (437)
T 1n11_A          171 ----------------------------------------------------------------HPNAAGKNGLTPLHVA  186 (437)
T ss_dssp             ----------------------------------------------------------------CTTCCCSSCCCHHHHH
T ss_pred             ----------------------------------------------------------------CCCCCCCCCCCHHHHH
Confidence                                                                            3444567789999999


Q ss_pred             HHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy11230        353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE  431 (553)
Q Consensus       353 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  431 (553)
                      +..++.+++++|+++|.+++..+..|.|||++|+..++.+++ .|++.|.+++..+..|.||||+|+..|+.+++++|++
T Consensus       187 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  266 (437)
T 1n11_A          187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS  266 (437)
T ss_dssp             HHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999988 7789999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccC
Q psy11230        432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW  511 (553)
Q Consensus       432 ~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  511 (553)
                      +|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.    
T Consensus       267 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~----  342 (437)
T 1n11_A          267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK----  342 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT----
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887    


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       512 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      .|.||||+|+.+|+.++|++|+++|++++.+|.+|+|||++|
T Consensus       343 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             CCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            899999999999999999999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.1e-47  Score=354.03  Aligned_cols=132  Identities=25%  Similarity=0.248  Sum_probs=121.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q psy11230          9 NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVAS   87 (553)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~   87 (553)
                      +..|.|+|+.||+.|++++|++|++.|++++...+..|.||||+|+..|+ ++|++|+++|++++..+..+.++++.++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            34578999999999999999999999999998855679999999999999 99999999999999999999999999999


Q ss_pred             hcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy11230         88 IKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK  142 (553)
Q Consensus        88 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  142 (553)
                      .  +...++..+++.+++++.++..|+|||++|+..|+.+++++|+++|++++..
T Consensus       102 ~--~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~  154 (337)
T 4g8k_A          102 A--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  154 (337)
T ss_dssp             H--TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             c--ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh
Confidence            8  9999999999999999999999999999999999999999999998887644

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8e-47  Score=351.24  Aligned_cols=303  Identities=30%  Similarity=0.362  Sum_probs=197.7

Q ss_pred             CCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy11230         77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG  155 (553)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~  155 (553)
                      .|.|+||.|+..  |+.++|++|++.|+++|.++.. |+||||+|+..|+.++|++|+++|++++.++..+.++++    
T Consensus        24 ~~~t~L~~Av~~--g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~----   97 (337)
T 4g8k_A           24 EDNHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI----   97 (337)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH----
T ss_pred             CCChHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhH----
Confidence            467888888887  8888888888888888877654 788888888888888888888888877766555544332    


Q ss_pred             HHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCC
Q psy11230        156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV  235 (553)
Q Consensus       156 ~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~  235 (553)
                                                                                 .++..+....+..+++.+.++
T Consensus        98 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  118 (337)
T 4g8k_A           98 -----------------------------------------------------------LAAIAGSVKLLKLFLSKGADV  118 (337)
T ss_dssp             -----------------------------------------------------------HHHHHTCHHHHHHHHTTTCCT
T ss_pred             -----------------------------------------------------------HHHhcccchhhHHhhhccchh
Confidence                                                                       223344555666666777778


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHH
Q psy11230        236 HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLH  315 (553)
Q Consensus       236 ~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  315 (553)
                      +..+..|.||+++|+..|+.+++++|+++|+++......                                         
T Consensus       119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~-----------------------------------------  157 (337)
T 4g8k_A          119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-----------------------------------------  157 (337)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-----------------------------------------
T ss_pred             hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc-----------------------------------------
Confidence            888899999999999999999999999998876543210                                         


Q ss_pred             HHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCchHH
Q psy11230        316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK-HGADVNVIDNQGQMPLHIAVQNGYVAIP  394 (553)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~  394 (553)
                                         ..+....+..|.||||+|+..|+.+++++|++ .|++++..+..|.++++.++..+...  
T Consensus       158 -------------------~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~--  216 (337)
T 4g8k_A          158 -------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS--  216 (337)
T ss_dssp             -------------------C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT--
T ss_pred             -------------------ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc--
Confidence                               01122345678899999999999999999995 58888888888888887765443211  


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCC
Q psy11230        395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSD  473 (553)
Q Consensus       395 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~  473 (553)
                                                +...++++|+++|++++.++..|+||||+|+..|+.+++++|++. |++++.++
T Consensus       217 --------------------------~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d  270 (337)
T 4g8k_A          217 --------------------------DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  270 (337)
T ss_dssp             --------------------------THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred             --------------------------cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence                                      012344455555555555555555555555555555555555543 44555555


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230        474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV  541 (553)
Q Consensus       474 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  541 (553)
                      ..|+||||+|++.|+.+++++|+++|++++..+         ||++|+.+|+.++|++|+++||+++.
T Consensus       271 ~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~---------~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          271 SDGKTALLLAVELKLKKIAELLCKRGASTDCGD---------LVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC---------HHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------HHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            555555555555555555555555555554431         45555555555555555555555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3e-46  Score=350.88  Aligned_cols=331  Identities=26%  Similarity=0.254  Sum_probs=228.5

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTV   81 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~   81 (553)
                      +.+.++..|.|+|+.|+..|+.+.|+.|+.. +.+++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+||
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   94 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence            4456677788888888888888888888764 7777776 7788888888888888 88888888888888888888888


Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCC
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKG  161 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~  161 (553)
                      ||+|+..  ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||++++        
T Consensus        95 L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a--------  164 (351)
T 3utm_A           95 LHNACSY--GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA--------  164 (351)
T ss_dssp             HHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC--------
T ss_pred             HHHHHHC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHH--------
Confidence            8888887  888888888888888888888888888888888888888888888887776666555554433        


Q ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Q psy11230        162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQL  241 (553)
Q Consensus       162 ~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~  241 (553)
                                       +..+..+                                      .+++...           
T Consensus       165 -----------------~~~~~~~--------------------------------------~~~~~~~-----------  178 (351)
T 3utm_A          165 -----------------PTPELRE--------------------------------------RLTYEFK-----------  178 (351)
T ss_dssp             -----------------SSHHHHH--------------------------------------HHHHHHH-----------
T ss_pred             -----------------hhhhhHH--------------------------------------HHHhhhc-----------
Confidence                             1111111                                      1111111           


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhcc
Q psy11230        242 CKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK  321 (553)
Q Consensus       242 ~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (553)
                       ..++..++..+..+.++.++....                                                       
T Consensus       179 -~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------------------  202 (351)
T 3utm_A          179 -GHSLLQAAREADLAKVKKTLALEI-------------------------------------------------------  202 (351)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHTTTCC-------------------------------------------------------
T ss_pred             -ccHHHHHHHhccHHHHHHHHHhhc-------------------------------------------------------
Confidence             123444444444444444433211                                                       


Q ss_pred             ccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHH
Q psy11230        322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES---QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR  398 (553)
Q Consensus       322 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~  398 (553)
                                     .....+..+.||||+|+..   ++.+++++|++.|+++                           
T Consensus       203 ---------------~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~---------------------------  240 (351)
T 3utm_A          203 ---------------INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV---------------------------  240 (351)
T ss_dssp             ---------------TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT---------------------------
T ss_pred             ---------------ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc---------------------------
Confidence                           0111234566777777776   4456666666666554                           


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy11230        399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT  478 (553)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t  478 (553)
                           +.++..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus       241 -----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~t  315 (351)
T 3utm_A          241 -----NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT  315 (351)
T ss_dssp             -----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence                 444556678888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230        479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN  525 (553)
Q Consensus       479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~  525 (553)
                      |+++|    ..+++++|.+.+.....       .+.+++..|+++|+
T Consensus       316 al~~a----~~~~~~~l~~~~~~~~~-------~~~~~l~~A~~~gd  351 (351)
T 3utm_A          316 AAQMG----NEAVQQILSESTPMRTS-------DVDYRLLEASKAGD  351 (351)
T ss_dssp             HHHHS----CHHHHHHHHHC---------------------------
T ss_pred             hhhhh----hHHHHHHHHhccccccC-------cceeehhhhhccCC
Confidence            99887    66888888888765433       45578888888774

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-42  Score=314.85  Aligned_cols=262  Identities=31%  Similarity=0.361  Sum_probs=214.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc--ccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHH
Q psy11230        241 LCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ--FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV  318 (553)
Q Consensus       241 ~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  318 (553)
                      .|.++|+.|+..|+.+++++|++.|.++....  .+.+||++|+..|+.++                             
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~-----------------------------   54 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI-----------------------------   54 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH-----------------------------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH-----------------------------
Confidence            35678888888888888888888877665441  14455555555555544                             


Q ss_pred             hccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHH
Q psy11230        319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLI  397 (553)
Q Consensus       319 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll  397 (553)
                               +++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++ .++
T Consensus        55 ---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  125 (285)
T 1wdy_A           55 ---------VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY  125 (285)
T ss_dssp             ---------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred             ---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH
Confidence                     4555555555666666667777777777777777777777777776666777777777777776666 455


Q ss_pred             HcCCCCCCC----------CCCCChHHHHHHhcCCHHHHHHHHhC-CCCccccccCCCCHHHHHHHhCC----HHHHHHH
Q psy11230        398 RHGANVNAR----------NKYAKTPLHIAVEQKNMSALNYLLEH-GAQVDARTQLGKDPLYIAVEMHN----LSIVEQL  462 (553)
Q Consensus       398 ~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~----~~~v~~L  462 (553)
                      +.|.+++..          +..|.|||+.|+..|+.+++++|++. |++++..+..|.||||+|+..++    .+++++|
T Consensus       126 ~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L  205 (285)
T 1wdy_A          126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  205 (285)
T ss_dssp             HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred             HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH
Confidence            666666655          67799999999999999999999997 99999999999999999999999    9999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230        463 LKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV  541 (553)
Q Consensus       463 ~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  541 (553)
                      +++|++++.++..|.||||+|+..++.+++++|++ .|++++..+.    .|.||||+|++.|+.+++++|+++|++++.
T Consensus       206 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~----~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS----DGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC----CCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999 8999999887    899999999999999999999999999999


Q ss_pred             CCC
Q psy11230        542 KDK  544 (553)
Q Consensus       542 ~~~  544 (553)
                      +|.
T Consensus       282 ~d~  284 (285)
T 1wdy_A          282 GDL  284 (285)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.3e-43  Score=327.82  Aligned_cols=305  Identities=26%  Similarity=0.321  Sum_probs=200.9

Q ss_pred             CCchhhHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhC
Q psy11230        208 HGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQ  285 (553)
Q Consensus       208 ~~~~~l~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~  285 (553)
                      .+.++|+.|++.|+.+.++.|+.. +.+++..+..|.||||+|+..|+.+++++|+++|+++..... +.+||++|+..|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence            345678888888888877777765 677777788888888888888888888888888777655433 556666666666


Q ss_pred             CHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11230        286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV  365 (553)
Q Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  365 (553)
                      +.+++++|++.   ..+++..+..+.||||+|+..++.  +++++|+++|.+++..+..+.++++.++..+..+.+++..
T Consensus       103 ~~~iv~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          103 HYEVTELLLKH---GACVNAMDLWQFTPLHEAASKNRV--EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             CHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            66666666655   233334444555555555555543  5555555556666666666666666665555555555544


Q ss_pred             hCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc---CCHHHHHHHHhCCCCcccccc
Q psy11230        366 KHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ---KNMSALNYLLEHGAQVDARTQ  441 (553)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~  441 (553)
                      .            ..++..++..+..+.. .++..+......+..|.||||+|+..   +..+++++|+++|++++.++.
T Consensus       178 ~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~  245 (351)
T 3utm_A          178 K------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK  245 (351)
T ss_dssp             H------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT
T ss_pred             c------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC
Confidence            3            1244445555555444 44444444444555677777777777   446777777777777777777


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHH
Q psy11230        442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAV  521 (553)
Q Consensus       442 ~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~  521 (553)
                      .|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+.    .|.||+++| 
T Consensus       246 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----~g~tal~~a-  320 (351)
T 3utm_A          246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL----QGFTAAQMG-  320 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCChhhhh-
Confidence            777777777777777777777777777777777777777777777777777777777777777666    677777766 


Q ss_pred             hhCCHHHHHHHHhcCC
Q psy11230        522 ESNNEAVINKLLDYNP  537 (553)
Q Consensus       522 ~~~~~~~v~~Ll~~g~  537 (553)
                         +.+++++|.+.+.
T Consensus       321 ---~~~~~~~l~~~~~  333 (351)
T 3utm_A          321 ---NEAVQQILSESTP  333 (351)
T ss_dssp             ---CHHHHHHHHHC--
T ss_pred             ---hHHHHHHHHhccc
Confidence               5567777777655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-44  Score=333.75  Aligned_cols=318  Identities=19%  Similarity=0.201  Sum_probs=230.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHc
Q psy11230        173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEH  252 (553)
Q Consensus       173 ~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~  252 (553)
                      .+|..++..|+.+.++.+++.......         ..+++..+...|+++++++++..     ..+..|.||||+|+..
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~  104 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQHYSLYPN---------PQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAG  104 (373)
T ss_dssp             ---------------------------------------------------------------------CCCHHHHHHHS
T ss_pred             cccccccCCccccchhhhhhhhccccC---------ccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcC
Confidence            345556677777777777665443321         11234445577888888877654     3456778888888885


Q ss_pred             CCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHH
Q psy11230        253 GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL  332 (553)
Q Consensus       253 ~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  332 (553)
                      +. +++++|+....+......+.+||++|+..|+.+++++|+.                              ..++.|+
T Consensus       105 ~~-~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~------------------------------~~~~~ll  153 (373)
T 2fo1_E          105 SY-AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV------------------------------HEAKECI  153 (373)
T ss_dssp             SS-CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH------------------------------HHHHHHH
T ss_pred             Cc-hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHH------------------------------HHHHHHH
Confidence            54 6777776544433333346777887777777777777765                              3456678


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHH-HHHcC---CCCCCCCC
Q psy11230        333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHG---ANVNARNK  408 (553)
Q Consensus       333 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~-ll~~~---~~~~~~~~  408 (553)
                      +.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++. |+..+   .+++..+.
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999995 44555   68999999


Q ss_pred             CCChHHHHHHhcC---CHHHHHHHHhCCCCccc--------cccCCCCHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCC
Q psy11230        409 YAKTPLHIAVEQK---NMSALNYLLEHGAQVDA--------RTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFG  476 (553)
Q Consensus       409 ~~~~~l~~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~~~t~l~~A~~~~~~~~v~~L~~~g-~~~~~~~~~~  476 (553)
                      .|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++++ ++++.++..|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9999999999998   89999999999999876        5668999999999999999999999886 9999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC
Q psy11230        477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL  539 (553)
Q Consensus       477 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  539 (553)
                      .||||+|+..|+.+++++|+++|++++..+.    .|.|||++|+.+|+.++|++|+++|++.
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~----~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDA----TDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS----SSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCC----CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999999999999999999999887    8999999999999999999999999874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-43  Score=329.43  Aligned_cols=219  Identities=24%  Similarity=0.301  Sum_probs=163.0

Q ss_pred             HHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCc
Q psy11230        225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNINI  303 (553)
Q Consensus       225 v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  303 (553)
                      ++.|++.|++++.++..|.||||+|+..|+.+++++|+++|+++..... +.+||++|+..++.+++++|++..      
T Consensus       149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~------  222 (373)
T 2fo1_E          149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST------  222 (373)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH------
T ss_pred             HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcC------
Confidence            3556666777777777777777777777777777777766665543322 334444444444443333333320      


Q ss_pred             cccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCccccCCCCCc
Q psy11230        304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLVKHGADVNVIDNQGQM  380 (553)
Q Consensus       304 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~  380 (553)
                                                   ..+.+++..+..|.||||+|+..+   +.+++++|++.|++++..+.    
T Consensus       223 -----------------------------~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~----  269 (373)
T 2fo1_E          223 -----------------------------KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA----  269 (373)
T ss_dssp             -----------------------------HHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----
T ss_pred             -----------------------------ccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----
Confidence                                         001456777778888888888877   77888888888877765321    


Q ss_pred             HHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCC-CCccccccCCCCHHHHHHHhCCHHHH
Q psy11230        381 PLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIV  459 (553)
Q Consensus       381 ~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v  459 (553)
                                          ...+..+..|.||||+|+..|+.+++++|++++ ++++.++..|+||||+|+..|+.+++
T Consensus       270 --------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv  329 (373)
T 2fo1_E          270 --------------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  329 (373)
T ss_dssp             --------------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             --------------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHH
Confidence                                112446778999999999999999999999865 99999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230        460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI  502 (553)
Q Consensus       460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  502 (553)
                      ++|+++|++++.++..|.|||++|+.+|+.+++++|+++|++.
T Consensus       330 ~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          330 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999999999999999999999999999999998763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-41  Score=306.85  Aligned_cols=260  Identities=33%  Similarity=0.389  Sum_probs=217.9

Q ss_pred             CchhhHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCC
Q psy11230        209 GGQLLLHLVRNGHQNAVKLILEKGANVHAK-DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQH  286 (553)
Q Consensus       209 ~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~  286 (553)
                      +.++|+.|+..|+.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|.++..... +.+|+++|+..++
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            457788888888888888888888888777 67788888888888888888888888776544322 3444444444444


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230        287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK  366 (553)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~  366 (553)
                      .                                      +++++|+++|.+++..+..|.|||++|+..|+.+++++|++
T Consensus        85 ~--------------------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  126 (285)
T 1wdy_A           85 V--------------------------------------KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK  126 (285)
T ss_dssp             H--------------------------------------HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred             H--------------------------------------HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence            3                                      55555555566677777888889999999999999999999


Q ss_pred             CCCCcccc----------CCCCCcHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCC----HHHHHHHH
Q psy11230        367 HGADVNVI----------DNQGQMPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKN----MSALNYLL  430 (553)
Q Consensus       367 ~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll  430 (553)
                      .|++++..          +..|.|||+.|+..++.+++ .+++. +.+++..+..|+||||.|+..++    .+++++|+
T Consensus       127 ~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll  206 (285)
T 1wdy_A          127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL  206 (285)
T ss_dssp             TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH
T ss_pred             hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH
Confidence            88888776          67788999999999998888 45555 88999999999999999999998    89999999


Q ss_pred             hCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccccc
Q psy11230        431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI  506 (553)
Q Consensus       431 ~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  506 (553)
                      ++|++++.++..|+||||+|+..|+.+++++|++ .|++++.++..|.|||++|+..++.+++++|+++|++++..+
T Consensus       207 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            9999999999999999999999999999999999 899999999999999999999999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.8e-41  Score=301.41  Aligned_cols=208  Identities=27%  Similarity=0.325  Sum_probs=130.4

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHH
Q psy11230        340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAV  418 (553)
Q Consensus       340 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~  418 (553)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++ .|++.|++++..+..|.|||++|+
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            3455566666666666666666666666666666666666666666666666655 455566666666666666666666


Q ss_pred             hcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q psy11230        419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN  498 (553)
Q Consensus       419 ~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  498 (553)
                      ..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            6666666666666666655432 366666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       499 g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |++++. +.    .|.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|
T Consensus       213 ga~~~~-~~----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          213 GADVNQ-GK----GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             TCCTTC-CB----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             CCCCCC-CC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            666653 22    566666666666666666666666666666666666666654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.9e-41  Score=297.71  Aligned_cols=232  Identities=29%  Similarity=0.382  Sum_probs=173.3

Q ss_pred             CCccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcC
Q psy11230          3 ADVNATNKEGITLFQQAIVSS-------------QTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYN   68 (553)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~   68 (553)
                      +|+|.+|.+|.||||.|+..|             +.++|++|++.|++++...+..|.||||+|+..|+ ++|++|++.|
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            489999999999999999987             89999999999999977668899999999999999 9999999999


Q ss_pred             CCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCC-CccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230         69 VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGY  147 (553)
Q Consensus        69 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  147 (553)
                      ++++..+..|+||||+|+..  ++.+++++|++.|. +++.++..|.||||+|+..|+.+++++|++.|++++.++.   
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~---  155 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD---  155 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT---
T ss_pred             CCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC---
Confidence            99999999999999999999  99999999999987 8999999999999999999999999999999888765554   


Q ss_pred             cHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHH
Q psy11230        148 NALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKL  227 (553)
Q Consensus       148 t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~  227 (553)
                                            .|.|||++|+..|+.+++++|++.|++++.     ....+.++++.|+..|+.+++++
T Consensus       156 ----------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-----~~~~g~tpL~~A~~~~~~~~v~~  208 (253)
T 1yyh_A          156 ----------------------LGKSALHWAAAVNNVDAAVVLLKNGANKDM-----QNNREETPLFLAAREGSYETAKV  208 (253)
T ss_dssp             ----------------------TSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----cCCCCCCHHHHHHHCCCHHHHHH
Confidence                                  456677888889999999999999988764     24567889999999999999999


Q ss_pred             HHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy11230        228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA  266 (553)
Q Consensus       228 Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~  266 (553)
                      |+++|++++.++..|.||+++|+..|+.+++++|.....
T Consensus       209 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999987644

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=299.63  Aligned_cols=229  Identities=25%  Similarity=0.352  Sum_probs=207.8

Q ss_pred             ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHH
Q psy11230        303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPL  382 (553)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l  382 (553)
                      ....+..|.||||+|+..+..  +++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQ--LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL  129 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCH--HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred             ccCCCccCCCHHHHHHHcCCH--HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            345677888999999988865  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHH
Q psy11230        383 HIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ  461 (553)
Q Consensus       383 ~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~  461 (553)
                      ++|+..++.+++ .|++.+.+++..+ .|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            999999999988 6778898887654 49999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCC
Q psy11230        462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY-NPDLD  540 (553)
Q Consensus       462 L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~  540 (553)
                      |+++|++++. +..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+  ++.+++++|+++ |+++.
T Consensus       209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~----~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          209 LLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA----EGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            9999999985 88899999999999999999999999999999888    8999999999  557999999998 77754


Q ss_pred             C
Q psy11230        541 V  541 (553)
Q Consensus       541 ~  541 (553)
                      .
T Consensus       282 ~  282 (285)
T 3d9h_A          282 K  282 (285)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-39  Score=286.74  Aligned_cols=212  Identities=29%  Similarity=0.452  Sum_probs=118.6

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHH
Q psy11230        338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHI  416 (553)
Q Consensus       338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~  416 (553)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|||++|+..++.+++ .+++.|.+++..+..|.||||+
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            444455555555555555555555555555555555555555555555555555554 3444555555555555555555


Q ss_pred             HHhcCCHHHHHHHHhCC-CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy11230        417 AVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL  495 (553)
Q Consensus       417 a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  495 (553)
                      |+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            55555555555555555 45555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       496 l~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      +++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|
T Consensus       164 l~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          164 LAAKCDLHAVNI----HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HTTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred             HHcCCCCCCcCC----CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            555555555544    455555555555555555555555555555555555555543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.3e-40  Score=290.65  Aligned_cols=232  Identities=28%  Similarity=0.328  Sum_probs=183.3

Q ss_pred             ccccCCCCCchHHHHHhcc-----------ccChHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy11230        303 INTKGPTNKAPLHLVVQRK-----------SWNTTMFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGAD  370 (553)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~  370 (553)
                      ++..+..|.||||+|+..+           ..+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4556777888888888766           3355999999999999865 488999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-CCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHH
Q psy11230        371 VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLY  448 (553)
Q Consensus       371 ~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  448 (553)
                      ++..+..|+||||+|+..++.+++ .|++.+. +++..+..|.||||+|+..++.+++++|+++|++++..+..|+||||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            999999999999999999999988 5667776 88999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHH
Q psy11230        449 IAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV  528 (553)
Q Consensus       449 ~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  528 (553)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+++|+.++
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc----CCCCHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999887    89999999999999999


Q ss_pred             HHHHHhcCCC
Q psy11230        529 INKLLDYNPD  538 (553)
Q Consensus       529 v~~Ll~~g~~  538 (553)
                      +++|.+....
T Consensus       239 ~~~l~~~~~~  248 (253)
T 1yyh_A          239 VRLLDLEHHH  248 (253)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHhhh
Confidence            9999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-39  Score=295.34  Aligned_cols=244  Identities=24%  Similarity=0.255  Sum_probs=181.9

Q ss_pred             cccCCCCCchHHHHHhccccChHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCc
Q psy11230        304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN---VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM  380 (553)
Q Consensus       304 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  380 (553)
                      ...+..|.||||+|+..++.  +++++|++.|.+   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHE--PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCH--HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            45677788888888887765  888888888777   6777788888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCchHHH-HHHcCCCCCC-------------CCCCCChHHHHHHhcCCH-HHHHHHHhCCCCccccccCCCC
Q psy11230        381 PLHIAVQNGYVAIPN-LIRHGANVNA-------------RNKYAKTPLHIAVEQKNM-SALNYLLEHGAQVDARTQLGKD  445 (553)
Q Consensus       381 ~l~~a~~~~~~~~~~-ll~~~~~~~~-------------~~~~~~~~l~~a~~~~~~-~~~~~Ll~~g~~~~~~~~~~~t  445 (553)
                      |||+|+..++.+++. ++..+.+...             ....+.++++.++..+.. .....+...+.+++..+..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            888888888888774 4455544321             112344555555544433 3333444466778889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230        446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN  524 (553)
Q Consensus       446 ~l~~A~~~~~~~~v~~L~~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~  524 (553)
                      |||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|+++|++++..+.    .|.||||+|+.+|
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~----~g~tpL~~A~~~~  236 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----GGRTPLGSALLRP  236 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc----CCCCHHHHHHHcC
Confidence            99999999999999999999999999885 499999999999999999999999999999887    8999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        525 NEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       525 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      +.+++++|+++|++++.+|.+|.|||++|
T Consensus       237 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          237 NPILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             CHHHHHHHHHTTCCCCCCC----------
T ss_pred             CcHHHHHHHHcCCCcCcCCCccccccccc
Confidence            99999999999999999999999999986

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-38  Score=281.71  Aligned_cols=209  Identities=29%  Similarity=0.423  Sum_probs=122.8

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHH
Q psy11230        341 KDDENKTPLHIAIESQCWDAVSLLVK----HGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLH  415 (553)
Q Consensus       341 ~~~~~~t~l~~a~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~  415 (553)
                      .|..|.||||+|+..|+.+++++|++    .|.+++..+..|.||||+|+..++.+++ .|++.|++++..+..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   84 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            44555566666666666665555554    4555555555566666666666655555 444555555555555666666


Q ss_pred             HHHhcCCHHHHHHHHhCCC----CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCHH
Q psy11230        416 IAVEQKNMSALNYLLEHGA----QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVA  490 (553)
Q Consensus       416 ~a~~~~~~~~~~~Ll~~g~----~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A~~~~~~~  490 (553)
                      +|+..++.+++++|++++.    +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~  164 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  164 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence            6666666666666665554    555555556666666666666666666666666655555 55566666666666666


Q ss_pred             HHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        491 ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       491 ~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      ++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       165 ~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          165 MVQLLLQHGANVNAQMY----SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  223 (241)
T ss_dssp             HHHHHHHTTCCTTCBCT----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             HHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            66666666666555544    555666666666666666666666666666666666666654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.5e-40  Score=307.37  Aligned_cols=265  Identities=18%  Similarity=0.175  Sum_probs=222.5

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230          2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT   80 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t   80 (553)
                      +.+++.+|.+|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++.  ..|.|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t   86 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK   86 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCC
Confidence            4678999999999999999999999999999999999988 8999999999999999 999999999996654  47899


Q ss_pred             HHHHHHhhcCCChHHHHHHhhC----CCCccC-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHhcCC
Q psy11230         81 VLHTVASIKTRDPTAVEILKTN----RANVNI-----------------KNKEGDTPLHIAARTG--NYKMVRVLIDHGA  137 (553)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~t~L~~A~~~g--~~~iv~~Ll~~~~  137 (553)
                      |||+|+..  ++.+++++|++.    |.+++.                 ++..|.||||+|+..|  +.++|++|+++|+
T Consensus        87 ~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           87 PIHLAVMA--NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             HHHHHHHc--CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            99999999  999999999999    888777                 8889999999999999  9999999999998


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHH
Q psy11230        138 HTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV  217 (553)
Q Consensus       138 ~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~  217 (553)
                      +++.++.                         .|.|||++|+..|+.+++++|++.|++............+.++|+.|+
T Consensus       165 ~~~~~d~-------------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~  219 (364)
T 3ljn_A          165 SPTAKDK-------------------------ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI  219 (364)
T ss_dssp             CTTCCCT-------------------------TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH
T ss_pred             CCcccCC-------------------------CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH
Confidence            8775554                         456678889999999999999999988332222334667889999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc-------------ccccCCHHHHHHHh
Q psy11230        218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-------------LQFIHSPLHLAIEK  284 (553)
Q Consensus       218 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~-------------~~~~~~~l~~a~~~  284 (553)
                      ..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++++.++..             ...+.++++.|+..
T Consensus       220 ~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~  299 (364)
T 3ljn_A          220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD  299 (364)
T ss_dssp             TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhc
Confidence            99999999999999999999999999999999999999999999998764311             11134556556666


Q ss_pred             CCHHHHHHHHHh
Q psy11230        285 QHIAIVQLLLRR  296 (553)
Q Consensus       285 ~~~~~~~~l~~~  296 (553)
                      ++.+.+..|+..
T Consensus       300 ~~~~~v~~ll~~  311 (364)
T 3ljn_A          300 PSKQEVLQLLQE  311 (364)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            655555555444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.1e-38  Score=280.87  Aligned_cols=228  Identities=21%  Similarity=0.272  Sum_probs=204.4

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230          3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTV   81 (553)
Q Consensus         3 ~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~   81 (553)
                      ++++.+|.+|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            688999999999999999999999999999999999988 8899999999999999 99999999999999999999999


Q ss_pred             HHHHHhhcCCChHHHHHHhhCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhC
Q psy11230         82 LHTVASIKTRDPTAVEILKTNR-ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK  160 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~  160 (553)
                      ||+|+..  ++.+++++|++.| .+++.++..|+||||+|+..|+.+++++|++.|++++.++..               
T Consensus        81 L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~---------------  143 (237)
T 3b7b_A           81 LHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE---------------  143 (237)
T ss_dssp             HHHHHHT--TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT---------------
T ss_pred             HHHHHHc--CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC---------------
Confidence            9999998  9999999999998 899999999999999999999999999999999887655544               


Q ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q psy11230        161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQ  240 (553)
Q Consensus       161 ~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~  240 (553)
                                |.|||++|+..|+.+++++|++.|++++..     ...+.++++.|+..|+.+++++|+++|++++.++.
T Consensus       144 ----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~  208 (237)
T 3b7b_A          144 ----------ENICLHWAAFSGCVDIAEILLAAKCDLHAV-----NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK  208 (237)
T ss_dssp             ----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCC-----CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             ----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-----CCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCC
Confidence                      556777888889999999999988877642     44567888888888888999999988888888888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh
Q psy11230        241 LCKTALDIAVEHGHLKIVEFLLD  263 (553)
Q Consensus       241 ~~~~~l~~A~~~~~~e~v~~Ll~  263 (553)
                      .|.|||++|+..++.+.+..+++
T Consensus       209 ~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          209 EGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Confidence            88899999888888766655543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=290.22  Aligned_cols=205  Identities=27%  Similarity=0.292  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC--------ccccCCCCCcHHHHHHHcCCch--HHHHHHcCCCCCCCCCCCChHH
Q psy11230        345 NKTPLHIAIESQCWDAVSLLVKHGAD--------VNVIDNQGQMPLHIAVQNGYVA--IPNLIRHGANVNARNKYAKTPL  414 (553)
Q Consensus       345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~--------~~~~~~~~~~~l~~a~~~~~~~--~~~ll~~~~~~~~~~~~~~~~l  414 (553)
                      +.++|+.|+..|+.++|++|++.|.+        ++..+..+.+||+.|+..+...  +..++..|++++.++..|+|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            34455555555555555555554443        2233344455555555444332  2244455555555555555555


Q ss_pred             HHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy11230        415 HIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILEC  494 (553)
Q Consensus       415 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~  494 (553)
                      |+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~  170 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL  170 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        495 LLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       495 Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+++|++++..+.    .|.||||+|+..|+.++|++|+++|++++++|.+|+||||+|
T Consensus       171 Ll~~gadvn~~~~----~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          171 LLQHGASINASNN----KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             HHHTTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             HHHCCCCCCcccc----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            5555555555444    455555555555555555555555555555555555555544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-39  Score=306.79  Aligned_cols=243  Identities=20%  Similarity=0.277  Sum_probs=213.1

Q ss_pred             ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHH
Q psy11230        303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPL  382 (553)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l  382 (553)
                      ....+..|.||||+|+..++.  +++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  ..|.|||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~--~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L   88 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQT--DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI   88 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCH--HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence            444566778888888888765  888888888888888888999999999999999999999998886543  4688999


Q ss_pred             HHHHHcCCchHH-HHHHc----CCCCCC-----------------CCCCCChHHHHHHhcC--CHHHHHHHHhCCCCccc
Q psy11230        383 HIAVQNGYVAIP-NLIRH----GANVNA-----------------RNKYAKTPLHIAVEQK--NMSALNYLLEHGAQVDA  438 (553)
Q Consensus       383 ~~a~~~~~~~~~-~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~  438 (553)
                      |+|+..++.+++ .|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|+++|++++.
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~  168 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA  168 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence            999999998888 55555    666665                 7888999999999999  99999999999999999


Q ss_pred             cccCCCCHHHHHHHhCCHHHHHHHHhcCCC-----CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCC
Q psy11230        439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKAN-----VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG  513 (553)
Q Consensus       439 ~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  513 (553)
                      .+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++..+.    .|
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~----~g  244 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN----EH  244 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT----TS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CC
Confidence            999999999999999999999999999998     999999999999999999999999999999999999887    89


Q ss_pred             CcHHHHHHhhCCHHHHHHHHhcCCCCCC------------CCCCCCCCCCCC
Q psy11230        514 YTPLHLAVESNNEAVINKLLDYNPDLDV------------KDKNGNTALHPS  553 (553)
Q Consensus       514 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~~~t~l~~a  553 (553)
                      .||||+|+..|+.++|++|+++|++++.            .+..+.|||+.|
T Consensus       245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  296 (364)
T 3ljn_A          245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA  296 (364)
T ss_dssp             CCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCS
T ss_pred             CCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhh
Confidence            9999999999999999999999876433            455677887654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.5e-39  Score=282.69  Aligned_cols=228  Identities=29%  Similarity=0.390  Sum_probs=201.8

Q ss_pred             ccCCCCCchHHHHHhccccChHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCc
Q psy11230        305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLY----HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM  380 (553)
Q Consensus       305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  380 (553)
                      ..+..|.||||+|+..+..  +++++|++    .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus         4 ~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNL--PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCH--HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccCCCCCcHHHHHHHcCCH--HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            3456677777777777654  66666665    78899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCchHH-HHHHcCC----CCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHhC
Q psy11230        381 PLHIAVQNGYVAIP-NLIRHGA----NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMH  454 (553)
Q Consensus       381 ~l~~a~~~~~~~~~-~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~  454 (553)
                      |||+|+..++.+++ .++..+.    +++..+..|.||||+|+..++.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            99999999999988 5667766    788889999999999999999999999999999999988 78999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230        455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD  534 (553)
Q Consensus       455 ~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  534 (553)
                      +.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+..|+.++++.|++
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC----HNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCTTTTCSSHHHHHHHTC---
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCC----CCCCHHHHHHhcCcHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999887    89999999999999999999999


Q ss_pred             cCCC
Q psy11230        535 YNPD  538 (553)
Q Consensus       535 ~g~~  538 (553)
                      .+++
T Consensus       238 ~~aS  241 (241)
T 1k1a_A          238 RPAS  241 (241)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.3e-38  Score=276.00  Aligned_cols=198  Identities=31%  Similarity=0.366  Sum_probs=181.1

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHH
Q psy11230        338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHI  416 (553)
Q Consensus       338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~  416 (553)
                      ++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..++.+++ .++++|.+++..+..|.||||+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            345677788889999999999999999998888888888888999999988888887 6778888888889999999999


Q ss_pred             HHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy11230        417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL  496 (553)
Q Consensus       417 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  496 (553)
                      |+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC
Q psy11230        497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL  539 (553)
Q Consensus       497 ~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  539 (553)
                      ++|++++..+.    .|.|||++|+..++.+++++|+++|+++
T Consensus       193 ~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          193 TQGASIYIENK----EEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HTTCCSCCCCT----TSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HCCCCCCCCCC----CCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999998877    8999999999999999999999998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-37  Score=273.07  Aligned_cols=205  Identities=24%  Similarity=0.330  Sum_probs=176.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCCCcHHHHHHHcCCchHH-HHHHcC--CCCCC-CCCCCChHHHHHHh
Q psy11230        345 NKTPLHIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIP-NLIRHG--ANVNA-RNKYAKTPLHIAVE  419 (553)
Q Consensus       345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~-~ll~~~--~~~~~-~~~~~~~~l~~a~~  419 (553)
                      |.||||.|+..|+.+++++|++.+.+... .+..|+||||+|+..++.+++ .+++.+  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            56788888888888888888887766544 677888888888888888877 566777  44544 67788999999999


Q ss_pred             cCCHHHHHHHHhCC--CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy11230        420 QKNMSALNYLLEHG--AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV  497 (553)
Q Consensus       420 ~~~~~~~~~Ll~~g--~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  497 (553)
                      .|+.+++++|+++|  .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999988  8888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-CCcccccccccCCCCcHHHHHHhhCCHHHHHHHH-hcCCCCCCCCCCCCCCCCCC
Q psy11230        498 NK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLL-DYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       498 ~g-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~l~~a  553 (553)
                      +| ++++..+.    .|.||||+|+..|+.+++++|+ ++|++++.+|.+|.||||+|
T Consensus       162 ~g~~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          162 LGKSAVNWQDK----QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             TTCCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             cCcccccCcCC----CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            98 88888777    8889999999999999999999 88999999999999999886

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-37  Score=282.45  Aligned_cols=248  Identities=20%  Similarity=0.201  Sum_probs=165.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGAN---INDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT   80 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t   80 (553)
                      +|.+|.+|.||||+||..|+.++|++|++.|++   ++.. +..|.||||+|+..|+ ++|++|+++|++++..+..|+|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            578999999999999999999999999999998   6666 8899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhhcCCChHHHHHHhhCCCCccC-------------CCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCCCCCCCC
Q psy11230         81 VLHTVASIKTRDPTAVEILKTNRANVNI-------------KNKEGDTPLHIAARTGN-YKMVRVLIDHGAHTECKNHQG  146 (553)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~-------------~~~~~~t~L~~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~  146 (553)
                      |||+|+..  ++.+++++|++.|++...             ....+.++++.++..+. ..+...+...+++++..+..|
T Consensus        81 pL~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           81 ALHLACRV--RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             HHHHHTTT--TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             HHHHHHHc--CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            99999998  999999999998866321             12233445555444432 233333444555666666666


Q ss_pred             CcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHH
Q psy11230        147 YNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK  226 (553)
Q Consensus       147 ~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~  226 (553)
                      .|||                         ++|+..|+.+++++|++.|++++...    ...+.+||+.|+..|+.++++
T Consensus       159 ~t~L-------------------------~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~~g~tpL~~A~~~~~~~~v~  209 (282)
T 1oy3_D          159 HTPL-------------------------HVAVIHKDAEMVRLLRDAGADLNKPE----PTCGRTPLHLAVEAQAASVLE  209 (282)
T ss_dssp             CCHH-------------------------HHHHHTTCHHHHHHHHHHTCCTTCCC----TTTCCCHHHHHHHTTCHHHHH
T ss_pred             cCHH-------------------------HHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcCHHHHHHHcCCHHHHH
Confidence            6653                         34455666666666666666654310    122556666777777777777


Q ss_pred             HHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHh
Q psy11230        227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEK  284 (553)
Q Consensus       227 ~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~  284 (553)
                      +|+++|++++.++..|.|||++|+..|+.+++++|+++|+++..... +.+|+++|...
T Consensus       210 ~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             HHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            77777777777777777777777777777777777777776665544 55666655443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.8e-37  Score=271.98  Aligned_cols=208  Identities=26%  Similarity=0.305  Sum_probs=197.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHh
Q psy11230        342 DDENKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVE  419 (553)
Q Consensus       342 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~  419 (553)
                      +..+.++|+.|+..|+.+.+++|++.+.. .+..+..|.||||+|+..|+.+++ .+++.|.+++..+..|+||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            34578999999999999999999987544 667788999999999999999988 6779999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Q psy11230        420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK  499 (553)
Q Consensus       420 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g  499 (553)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       500 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      ++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus       163 ~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          163 ASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             CCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred             CCccccCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999877    899999999999999999999999999999999999999976

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-37  Score=268.87  Aligned_cols=211  Identities=29%  Similarity=0.345  Sum_probs=199.6

Q ss_pred             HHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-C
Q psy11230        326 TMFKTLLYHGANVNVK-DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-N  402 (553)
Q Consensus       326 ~~~~~l~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~  402 (553)
                      +++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..++.+++ .+++.+. +
T Consensus         5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   84 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD   84 (223)
T ss_dssp             CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred             HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            6777888889988765 78999999999999999999999999999999999999999999999999988 5667766 8


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230        403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL  482 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~  482 (553)
                      ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                      |+..++.+++++|+++|++++..+.    .|.|||++|++.|+.+++++|+++|+...
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccc----cCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            9999999999999999999998877    89999999999999999999999999643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=280.75  Aligned_cols=232  Identities=26%  Similarity=0.355  Sum_probs=148.1

Q ss_pred             cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy11230        274 IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI  353 (553)
Q Consensus       274 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  353 (553)
                      ..++|+.|+..|+.+++++|++.+......                              ....++..+..+.|||+.|+
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~------------------------------~~~~~~~~~~~~~t~L~~a~   60 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLED------------------------------AEDTVSAADPEFCHPLCQCP   60 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCccccc------------------------------ccccccccCccCCCHHHHHH
Confidence            446788888888888888888764321110                              00112334556667777777


Q ss_pred             HcCCH-HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy11230        354 ESQCW-DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE  431 (553)
Q Consensus       354 ~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  431 (553)
                      ..+.. .++++|++.|++++..+.+|+||||+|+..|+.+++ .|+..+++++..+..|.||++.|+..++.+++++|++
T Consensus        61 ~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  140 (269)
T 4b93_B           61 KCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD  140 (269)
T ss_dssp             --------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH
Confidence            66654 367777777777777777777777777777777776 5667777777777788888888888888888888888


Q ss_pred             CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccC
Q psy11230        432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW  511 (553)
Q Consensus       432 ~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  511 (553)
                      +|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.    
T Consensus       141 ~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~----  216 (269)
T 4b93_B          141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK----  216 (269)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT----
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888887776    


Q ss_pred             CCCcHHHHHHhhCC-HHHHHHHHhcCCCC
Q psy11230        512 KGYTPLHLAVESNN-EAVINKLLDYNPDL  539 (553)
Q Consensus       512 ~~~t~l~~A~~~~~-~~~v~~Ll~~g~~~  539 (553)
                      .|.||||+|+++++ .+++++|.+.++.+
T Consensus       217 ~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          217 RQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             TSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             CCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            78888888887775 34555555555543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=268.24  Aligned_cols=232  Identities=27%  Similarity=0.336  Sum_probs=210.1

Q ss_pred             ccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC-CCCcHHH
Q psy11230        305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN-QGQMPLH  383 (553)
Q Consensus       305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~  383 (553)
                      ..+..+.++|+.|+..+..  +++++|++.|.+++..+..|.|||++|+..|+.+++++|++.|.+++.... .|.|||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~--~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIY--ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccchHHHHHHHcCCh--HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            3466778888888888866  889999999999999999999999999999999999999999998876554 4899999


Q ss_pred             HHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCC-HHHHHH
Q psy11230        384 IAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN-LSIVEQ  461 (553)
Q Consensus       384 ~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-~~~v~~  461 (553)
                      .|+..++.+++ .+++.|++++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  161 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL  161 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence            99999999988 6778999999999999999999999999999999999999999999999999999997766 899999


Q ss_pred             HHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        462 LLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       462 L~~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                      |++.|++++..+. .|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|++.|+.+++++|+++|++..
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI----KGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            9999999999887 899999999999999999999999999999887    89999999999999999999999998865


Q ss_pred             CC
Q psy11230        541 VK  542 (553)
Q Consensus       541 ~~  542 (553)
                      ..
T Consensus       238 ~~  239 (240)
T 3eu9_A          238 YD  239 (240)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=267.94  Aligned_cols=233  Identities=23%  Similarity=0.289  Sum_probs=206.8

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCC-CCCcH
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDN-LGNTV   81 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~-~~~t~   81 (553)
                      +++..|..|.|+|+.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++.... .|.||
T Consensus         1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            46788999999999999999999999999999999988 8899999999999999 999999999999886654 59999


Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCC
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKG  161 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~  161 (553)
                      ||+|+..  ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|               
T Consensus        80 L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g---------------  142 (240)
T 3eu9_A           80 LHWATRQ--GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG---------------  142 (240)
T ss_dssp             HHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS---------------
T ss_pred             hHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC---------------
Confidence            9999999  99999999999999999999999999999999999999999999998877665555               


Q ss_pred             CCccccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q psy11230        162 ADINVENNFGKTAFQMAYEMKN-FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQ  240 (553)
Q Consensus       162 ~~~~~~~~~~~~~l~~A~~~g~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~  240 (553)
                                .||+++|+..++ .+++++|++.+++++...    ...+.++|+.|+..|+.+++++|+++|++++.++.
T Consensus       143 ----------~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          143 ----------MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI  208 (240)
T ss_dssp             ----------CCHHHHHHHHCCSSTTHHHHHHTTCCTTCCC----TTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT
T ss_pred             ----------CcHHHHHHHhCChHHHHHHHHhcCCCcchhh----ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence                      556667775554 889999999998877521    23567899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy11230        241 LCKTALDIAVEHGHLKIVEFLLDHGACV  268 (553)
Q Consensus       241 ~~~~~l~~A~~~~~~e~v~~Ll~~~~~~  268 (553)
                      .|.|||++|+..|+.+++++|++.+...
T Consensus       209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          209 KGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            9999999999999999999999987643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.2e-36  Score=260.27  Aligned_cols=202  Identities=27%  Similarity=0.325  Sum_probs=125.9

Q ss_pred             CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCC-CCcccCCCC
Q psy11230          2 DADVNAT-NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNV-DVNAVDNLG   78 (553)
Q Consensus         2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~-~~~~~~~~~   78 (553)
                      |++++.+ |..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.+. +++..+..|
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g   92 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG   92 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            4444443 555555555555555555555555555555554 5555555555555555 55555555544 455555555


Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHH
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL  158 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~  158 (553)
                      .||||+|+..  ++.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.++..             
T Consensus        93 ~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------  157 (223)
T 2f8y_A           93 TTPLILAARL--AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR-------------  157 (223)
T ss_dssp             CCHHHHHHHH--TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-------------
T ss_pred             CcHHHHHHHh--CcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-------------
Confidence            5555555555  5555555555555555555555555555555555555555555555554433333             


Q ss_pred             hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCC
Q psy11230        159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAK  238 (553)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~  238 (553)
                                                                        +.++++.|+..|+.+++++|+++|++++.+
T Consensus       158 --------------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  187 (223)
T 2f8y_A          158 --------------------------------------------------EETPLFLAAREGSYETAKVLLDHFANRDIT  187 (223)
T ss_dssp             --------------------------------------------------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             --------------------------------------------------CcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                                                              344555556667777888888888888888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy11230        239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVD  269 (553)
Q Consensus       239 ~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~  269 (553)
                      +..|.||+++|+..++.+++++|+++|....
T Consensus       188 ~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            8889999999999999999999999887543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-36  Score=278.50  Aligned_cols=231  Identities=30%  Similarity=0.381  Sum_probs=154.0

Q ss_pred             CCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy11230        309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN  388 (553)
Q Consensus       309 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  388 (553)
                      .+.+||+.|+..+..  +++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus        39 ~~~t~l~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           39 DDGAVFLAACSSGDT--EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             CHHHHHHHHHHHTCH--HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCH--HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            344555555555543  566666666666666666666677777766777777777766666666666666666666666


Q ss_pred             CCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh-CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-
Q psy11230        389 GYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-  465 (553)
Q Consensus       389 ~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-  465 (553)
                      |+.+++ .|+.+|++++..+..|.|||++|+..++.+++++++. .+.+++..+..+.+++..        .+..++.. 
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~  188 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSG  188 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhcc
Confidence            666666 4556666666666666677776666666666666654 445544333222222221        22223333 


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCC
Q psy11230        466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN  545 (553)
Q Consensus       466 g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  545 (553)
                      .......+..|.||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.++|++|+++|++++.+|..
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  264 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY----DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV  264 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCC
Confidence            333344566788888888888888888888888888887766    7888888888888888888888888888888888


Q ss_pred             CCCCCCCC
Q psy11230        546 GNTALHPS  553 (553)
Q Consensus       546 ~~t~l~~a  553 (553)
                      |.||||+|
T Consensus       265 g~t~l~~A  272 (299)
T 1s70_B          265 GQTAFDVA  272 (299)
T ss_dssp             SCCTTTSC
T ss_pred             CCCHHHHH
Confidence            88888876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.8e-37  Score=274.74  Aligned_cols=219  Identities=19%  Similarity=0.256  Sum_probs=155.4

Q ss_pred             CCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCc
Q psy11230         37 NINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDT  115 (553)
Q Consensus        37 ~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  115 (553)
                      +++.. +..|.||||+|+..|+ ++|++|++.|++++..+  |+||||+|+..  ++.+++++|+++|++++.++..|+|
T Consensus        23 ~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~t   97 (285)
T 3kea_A           23 DTFKA-DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDTKIVKILLFSGLDDSQFDDKGNT   97 (285)
T ss_dssp             TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS--SSCHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            34444 6677777777777777 77777777777776663  67777777776  7777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCC-CCHHHHHHHcCCHHHHHHHHHcC
Q psy11230        116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG-KTAFQMAYEMKNFPAIELFLKYG  194 (553)
Q Consensus       116 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~-~~~l~~A~~~g~~~~~~~Ll~~~  194 (553)
                      |||+|+..|+.+++++|+++|++++.++.                         .| .|||++|+..|+.+++++|++.|
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-------------------------~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGK-------------------------TGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGGGCSS-------------------------SGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCC-------------------------CCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            77777777777777777777666554433                         33 35566667777777777777776


Q ss_pred             CCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCcccc
Q psy11230        195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTA-LDIAVEHGHLKIVEFLLDHGACVDSLQF  273 (553)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-l~~A~~~~~~e~v~~Ll~~~~~~~~~~~  273 (553)
                      ++...      ...+.++|+.|+..|+.+++++|+++|++++.++..|.|| |++|+..|+.+++++|+++|+++.....
T Consensus       153 ~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          153 PSTFD------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             CTTCC------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred             Ccccc------ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence            65532      2256677888888888888888888888888888888886 8888888888888888888887766542


Q ss_pred             cCCHHHHHHHhCCHHHHHHHHHhc
Q psy11230        274 IHSPLHLAIEKQHIAIVQLLLRRN  297 (553)
Q Consensus       274 ~~~~l~~a~~~~~~~~~~~l~~~~  297 (553)
                            .|+..++.+++++|++.+
T Consensus       227 ------~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          227 ------ENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             ------GGGTTTCHHHHHHHHHHH
T ss_pred             ------hhhhcCCHHHHHHHHHcC
Confidence                  345567777777777764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.6e-37  Score=275.48  Aligned_cols=239  Identities=20%  Similarity=0.279  Sum_probs=162.5

Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcC
Q psy11230        219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNN  298 (553)
Q Consensus       219 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  298 (553)
                      ..+.+.+..++..+ +++.++..|.||||+|+..|+.+++++|+++|+++...                           
T Consensus         9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------------------------   60 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---------------------------   60 (285)
T ss_dssp             GCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---------------------------
T ss_pred             hcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---------------------------
Confidence            34444444444444 57888999999999999999999999999987755332                           


Q ss_pred             CCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCC
Q psy11230        299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG  378 (553)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~  378 (553)
                                .|.||||+|+..++.  +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus        61 ----------~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  128 (285)
T 3kea_A           61 ----------ENEFPLHQAATLEDT--KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG  128 (285)
T ss_dssp             ----------TTCCHHHHHTTSSSC--HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSG
T ss_pred             ----------CCCCHHHHHHHcCCH--HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Confidence                      144555555555544  66666666677777777777777777777777777777777777777777666


Q ss_pred             -CcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCH-HHHHHHhCC
Q psy11230        379 -QMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP-LYIAVEMHN  455 (553)
Q Consensus       379 -~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~  455 (553)
                       .||||+|+..++.+++ .|+.+|.+.... ..|.||||+|+..|+.+++++|+++|++++..+..|+|| ||+|+..|+
T Consensus       129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             GGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence             5777777777666666 444555444222 156677777777777777777777777777777667665 777777777


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230        456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK  505 (553)
Q Consensus       456 ~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  505 (553)
                      .+++++|+++|++++..+.       .|+..++.+++++|+++|++++..
T Consensus       208 ~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          208 IEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             HHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence            7777777777777666552       345566777777777777666554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.5e-36  Score=262.09  Aligned_cols=216  Identities=25%  Similarity=0.326  Sum_probs=183.1

Q ss_pred             CchHHHHHhccccChHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccc-cCCCCCcHHHHHH
Q psy11230        311 KAPLHLVVQRKSWNTTMFKTLLYHGANVN-VKDDENKTPLHIAIESQCWDAVSLLVKHG--ADVNV-IDNQGQMPLHIAV  386 (553)
Q Consensus       311 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~--~~~~~-~~~~~~~~l~~a~  386 (553)
                      .||||+|+..+..  ++++.|++.+.++. ..+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+
T Consensus         3 ~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            3 NYPLHQACMENEF--FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             CCHHHHHHHTTCH--HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             ccHHHHHHHhCCH--HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            3444444444433  44444444444433 36778899999999999999999999998  55555 6788999999999


Q ss_pred             HcCCchHH-HHHHcC--CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHH
Q psy11230        387 QNGYVAIP-NLIRHG--ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL  463 (553)
Q Consensus       387 ~~~~~~~~-~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~  463 (553)
                      ..++.+++ .+++.|  .+++..+..|.||||.|+..++.+++++|+++|++++..+..|+||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999888 566666  888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-hccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        464 KFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLL-VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       464 ~~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      ++| ++++.++..|.||||+|+..++.+++++|+ ++|++++..+.    .|.|||++|++.   +++++|+++
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~----~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN----KGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT----TSCBGGGGCSST---THHHHHHTT
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC----CCCcHHHHHHHH---HHHHHHHhc
Confidence            999 999999999999999999999999999999 89999999887    899999999765   577777764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.4e-37  Score=270.13  Aligned_cols=210  Identities=27%  Similarity=0.353  Sum_probs=189.9

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHH
Q psy11230        340 VKDDENKTPLHIAIESQCWDAVSLLVKHGA----DVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPL  414 (553)
Q Consensus       340 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l  414 (553)
                      ..|..|.||||+|+..|+.+++++|++.+.    +++..+..|+||||+|+..++.+++ .|++.|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            357789999999999999999999988754    6888899999999999999999988 56688999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCCC------ccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhC
Q psy11230        415 HIAVEQKNMSALNYLLEHGAQ------VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQ  487 (553)
Q Consensus       415 ~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~-~~~t~l~~A~~~~  487 (553)
                      |+|+..|+.+++++|+++|.+      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999876      467788899999999999999999999999999999987 9999999999999


Q ss_pred             CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC--CCCCCCCCCCCCC
Q psy11230        488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD--VKDKNGNTALHPS  553 (553)
Q Consensus       488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~~t~l~~a  553 (553)
                      +.+++++|+++|++++..+.    .|.|||++|+.+|+.+++++|+++|+++.  .++..|+||++.+
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTY----QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCT----TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             CHHHHHHHHHcCCCCCcccC----CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            99999999999999999887    89999999999999999999999999765  9999999998863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-36  Score=274.52  Aligned_cols=247  Identities=26%  Similarity=0.301  Sum_probs=187.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      .+..|.|||+.||..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+||||+|+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4567889999999999999999999999999988 8899999999999999 9999999999999999999999999999


Q ss_pred             hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHHHHhCC-CCc
Q psy11230         87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID-HGAHTECKNHQGYNALHVAVGILLRKG-ADI  164 (553)
Q Consensus        87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~~~~~l~~~~-~~~  164 (553)
                      ..  ++.+++++|+++|++++.++..|.||||+|+..|+.+++++++. .+.+++.....+.+++...+..++..+ ...
T Consensus       115 ~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          115 SC--GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             Hc--CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            99  99999999999999999999999999999999999999998886 466655444444444444433333333 333


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230        165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT  244 (553)
Q Consensus       165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  244 (553)
                      ...+..|.|||++|+..|+.+++++|++.|++++.     ....+.+||+.|+..|+.+++++|+++|++++.++..|.|
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-----~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  267 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-----KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-----cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            33445666777777776666666666666666543     1344556666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q psy11230        245 ALDIAVEHGHLKIVEFLLD  263 (553)
Q Consensus       245 ~l~~A~~~~~~e~v~~Ll~  263 (553)
                      ||++|+.. ..+.++.+++
T Consensus       268 ~l~~A~~~-~~~~l~~l~~  285 (299)
T 1s70_B          268 AFDVADED-ILGYLEELQK  285 (299)
T ss_dssp             TTTSCCSG-GGHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHH
Confidence            66666442 3344444433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1e-36  Score=280.25  Aligned_cols=264  Identities=16%  Similarity=0.179  Sum_probs=174.7

Q ss_pred             cCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHH
Q psy11230        252 HGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT  330 (553)
Q Consensus       252 ~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  330 (553)
                      ....+++++|+++|+++..... +.++++     |+.+++++|++++.++         +.+++++++......      
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~---------~~~~~~~a~~~~~~~------   88 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP---------EIQEMPTSLNNDSSN------   88 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred             hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCC---------ccccchHhhhccccc------
Confidence            4567889999999998877655 556654     8899999999885331         112333332220000      


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCC
Q psy11230        331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNK  408 (553)
Q Consensus       331 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~  408 (553)
                            .-........+..+.++..+..+++++|++.|++++. .+..|+||||+|+..|+.+++ .|+++|++++.++.
T Consensus        89 ------~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~  162 (327)
T 1sw6_A           89 ------RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN  162 (327)
T ss_dssp             ---------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT
T ss_pred             ------ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence                  0000011112334566666666777777777777777 677777777777777777766 56677777777777


Q ss_pred             CCChHHHHHHhcCC---HHHHHHHHhCC-CCccccccCCCCHHHHHHH----hCCHHHHHHHHhc---------------
Q psy11230        409 YAKTPLHIAVEQKN---MSALNYLLEHG-AQVDARTQLGKDPLYIAVE----MHNLSIVEQLLKF---------------  465 (553)
Q Consensus       409 ~~~~~l~~a~~~~~---~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~----~~~~~~v~~L~~~---------------  465 (553)
                      .|+||||+|+..|+   .++++.|++.+ .+++..+..|+||||+|+.    .|+.+++++|++.               
T Consensus       163 ~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~  242 (327)
T 1sw6_A          163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS  242 (327)
T ss_dssp             TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence            77777777777776   56666666654 5677777778888888887    7778888888766               


Q ss_pred             -----CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        466 -----KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       466 -----g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                           |++++.++..|.|||++|+.      +++|+++  +++..+.    .|.||||+|+..|+.++|++|+++|++++
T Consensus       243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~----~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDS----NGDTCLNIAARLGNISIVDALLDYGADPF  310 (327)
T ss_dssp             C----------------CHHHHHCS------HHHHHHH--TTTCCCT----TSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred             hhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                 88999999999999999985      8999988  5666666    89999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q psy11230        541 VKDKNGNTALHPS  553 (553)
Q Consensus       541 ~~~~~~~t~l~~a  553 (553)
                      .+|.+|+||||+|
T Consensus       311 ~~d~~G~TpL~~A  323 (327)
T 1sw6_A          311 IANKSGLRPVDFG  323 (327)
T ss_dssp             CCCTTSCCGGGGT
T ss_pred             ccCCCCCCHHHHH
Confidence            9999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-36  Score=279.20  Aligned_cols=269  Identities=18%  Similarity=0.190  Sum_probs=202.4

Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcC
Q psy11230        219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNN  298 (553)
Q Consensus       219 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  298 (553)
                      ....+++++|++.|++++..+..|.++++     |+.+++++|+++|.+...     +++..|+.....           
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-----~~~~~a~~~~~~-----------   87 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-----QEMPTSLNNDSS-----------   87 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred             hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-----ccchHhhhcccc-----------
Confidence            34557789999999999999999999877     899999999999876432     344444332100           


Q ss_pred             CCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC
Q psy11230        299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ  377 (553)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  377 (553)
                        ..............+.++.....  +++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        88 --~~~~~~~~~~~~~~~~a~~~~~~--~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~  163 (327)
T 1sw6_A           88 --NRNSEGGSSNQQQQHVSFDSLLQ--EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM  163 (327)
T ss_dssp             ------------------CHHHHHH--HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT
T ss_pred             --cccccccCCccchhHHHHHhhHH--HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence              00000111112233445544433  889999999999999 8999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCC---ch-HHHHHHcC-CCCCCCCCCCChHHHHHHh----cCCHHHHHHHHhC----------------
Q psy11230        378 GQMPLHIAVQNGY---VA-IPNLIRHG-ANVNARNKYAKTPLHIAVE----QKNMSALNYLLEH----------------  432 (553)
Q Consensus       378 ~~~~l~~a~~~~~---~~-~~~ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~----------------  432 (553)
                      |+||||+|+..|+   .+ +..+++.+ .+++.++..|+||||+|+.    .|+.+++++|++.                
T Consensus       164 g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~  243 (327)
T 1sw6_A          164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG  243 (327)
T ss_dssp             CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC
T ss_pred             CCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhh
Confidence            9999999999988   33 44666665 6789999999999999999    8999999999986                


Q ss_pred             ----CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccccccc
Q psy11230        433 ----GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS  508 (553)
Q Consensus       433 ----g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  508 (553)
                          |++++..+..|.||||+|+.      +++|+++  +++.++..|+||||+|+..|+.+++++|+++|++++..+. 
T Consensus       244 ~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~-  314 (327)
T 1sw6_A          244 TNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK-  314 (327)
T ss_dssp             ----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT-
T ss_pred             hhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-
Confidence                89999999999999999985      9999998  5888999999999999999999999999999999999988 


Q ss_pred             ccCCCCcHHHHHHhhC
Q psy11230        509 GIWKGYTPLHLAVESN  524 (553)
Q Consensus       509 ~~~~~~t~l~~A~~~~  524 (553)
                         .|.||||+|+++|
T Consensus       315 ---~G~TpL~~A~~~g  327 (327)
T 1sw6_A          315 ---SGLRPVDFGAGLE  327 (327)
T ss_dssp             ---TSCCGGGGTCC--
T ss_pred             ---CCCCHHHHHHhcC
Confidence               8999999998875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.4e-34  Score=233.51  Aligned_cols=155  Identities=35%  Similarity=0.457  Sum_probs=95.2

Q ss_pred             HHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHH
Q psy11230        382 LHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE  460 (553)
Q Consensus       382 l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~  460 (553)
                      |+.|+..|+.+++ .|++.|++++.++..|+|||++|+..++.+++++|+++|++++.++..|+||||+|+..|+.++++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~   87 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK   87 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHH
Confidence            3334444443333 333344444444555556666666666666666666666666666666666666666666666666


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230        461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD  540 (553)
Q Consensus       461 ~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  540 (553)
                      +|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+.    .|.|||++|+++|+.+++++|+++||+++
T Consensus        88 ~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~----~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS----DGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            66666666666666666666666666666666666666666666655    66677777777777777777777766654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2e-33  Score=240.42  Aligned_cols=190  Identities=26%  Similarity=0.364  Sum_probs=178.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc
Q psy11230        343 DENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ  420 (553)
Q Consensus       343 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~  420 (553)
                      ..+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..++.+++ .|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999998866 8899999999999999999999988 67789999999999999999999999


Q ss_pred             CCHHHHHHHH-hCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHhCC-----HHHHH
Q psy11230        421 KNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQN-----VAILE  493 (553)
Q Consensus       421 ~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g-~~~~~~~~~~~t~l~~A~~~~~-----~~~~~  493 (553)
                      |+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 577899999999999999999999999999999999 8999999999999999999998     99999


Q ss_pred             HHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       494 ~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      +|+++|++++..+.    .|.||||+|+..|+.+++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDN----SGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCC----CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999887    8999999999999999999999987

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-33  Score=231.22  Aligned_cols=159  Identities=36%  Similarity=0.462  Sum_probs=148.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSA  425 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  425 (553)
                      +.|+.|+..|+.++|++|++.|++++.++..|+||+++|+..+..++. .+++.|++++.++..|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            468999999999999999999999999999999999999999999988 7889999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230        426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK  505 (553)
Q Consensus       426 ~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  505 (553)
                      +++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|+|||++|+.+|+.+++++|+++|++++..
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.5e-33  Score=238.97  Aligned_cols=196  Identities=21%  Similarity=0.325  Sum_probs=170.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230          9 NKEGITLFQQAIVSSQTPIAKLLAERGA-NINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      +..+.|||+.|+..|+.++|+.|++.+. +++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3578999999999999999999999887 88877 8899999999999999 9999999999999999999999999999


Q ss_pred             hhcCCChHHHHHHh-hCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHHHHhCCCCc
Q psy11230         87 SIKTRDPTAVEILK-TNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTECKNHQGYNALHVAVGILLRKGADI  164 (553)
Q Consensus        87 ~~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~t~l~~~~~~l~~~~~~~  164 (553)
                      ..  ++.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|++.| ++++.++..|.||               
T Consensus        81 ~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~---------------  143 (201)
T 3hra_A           81 AQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA---------------  143 (201)
T ss_dssp             HT--TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH---------------
T ss_pred             Hc--CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH---------------
Confidence            98  9999999999 677899999999999999999999999999999998 7777666555554               


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230        165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT  244 (553)
Q Consensus       165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  244 (553)
                                |++|+..++.                                 ..++.+++++|+++|++++.++..|.|
T Consensus       144 ----------L~~A~~~~~~---------------------------------~~~~~~~v~~Ll~~ga~~~~~~~~g~t  180 (201)
T 3hra_A          144 ----------LIEAVGLREG---------------------------------NQLYQDIVKLLMENGADQSIKDNSGRT  180 (201)
T ss_dssp             ----------HHHHHHSSCC---------------------------------SHHHHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ----------HHHHHHhccc---------------------------------hhhHHHHHHHHHHCCCCCCccCCCCCC
Confidence                      4444443320                                 011267888888888888999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCC
Q psy11230        245 ALDIAVEHGHLKIVEFLLDHG  265 (553)
Q Consensus       245 ~l~~A~~~~~~e~v~~Ll~~~  265 (553)
                      ||++|+..|+.+++++|+++|
T Consensus       181 ~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          181 AMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.6e-34  Score=259.69  Aligned_cols=210  Identities=25%  Similarity=0.340  Sum_probs=160.2

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCcc----ccCCCCCcHHHHHHHc---CCchHH-HHHHcCCC---
Q psy11230        338 VNVKDDENKTPLHIAIESQCWDAVSLLVK----HGADVN----VIDNQGQMPLHIAVQN---GYVAIP-NLIRHGAN---  402 (553)
Q Consensus       338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~----~~~~~~----~~~~~~~~~l~~a~~~---~~~~~~-~ll~~~~~---  402 (553)
                      .+..+..|.|+|+.|+..|+.++++.|++    .+.+++    ..+..|+||||+|+..   |+.+++ .|++.|++   
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            34456667777777777777776666664    444443    2356677777777765   666666 45555433   


Q ss_pred             --------CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccccc--------------CCCCHHHHHHHhCCHHHHH
Q psy11230        403 --------VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ--------------LGKDPLYIAVEMHNLSIVE  460 (553)
Q Consensus       403 --------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~~~t~l~~A~~~~~~~~v~  460 (553)
                              ....+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.++++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                    223566899999999999999999999999999999887              7999999999999999999


Q ss_pred             HHHh---cCCCCCCCCCCCCcHHHHHHHhCC---------HHHHHHHHhccCCccc-------ccccccCCCCcHHHHHH
Q psy11230        461 QLLK---FKANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADINA-------KIISGIWKGYTPLHLAV  521 (553)
Q Consensus       461 ~L~~---~g~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~~-------~~~~~~~~~~t~l~~A~  521 (553)
                      +|++   +|++++.++..|+||||+|+..++         .+++++|+++|++++.       .+.    .|.||||+|+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~----~g~TpL~~A~  241 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR----KGLTPLALAA  241 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT----TSCCHHHHHH
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC----CCCCHHHHHH
Confidence            9999   999999999999999999999998         8999999999999974       444    8999999999


Q ss_pred             hhCCHHHHHHHHhcCC-CCCCCCCCCCCCCC
Q psy11230        522 ESNNEAVINKLLDYNP-DLDVKDKNGNTALH  551 (553)
Q Consensus       522 ~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~  551 (553)
                      ..|+.++|++|+++|+ ++......+.+|-|
T Consensus       242 ~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          242 SSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HTTCHHHHHHHHHHHTC--------------
T ss_pred             HhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999999999999 89988888877754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.6e-34  Score=252.85  Aligned_cols=191  Identities=24%  Similarity=0.308  Sum_probs=155.0

Q ss_pred             CCCHHHHHHHcCCHH----HHHHHHhCCCCccc----cCCCCCcHHHHHHHc---CCchHH-HHHHcCCCCC--------
Q psy11230        345 NKTPLHIAIESQCWD----AVSLLVKHGADVNV----IDNQGQMPLHIAVQN---GYVAIP-NLIRHGANVN--------  404 (553)
Q Consensus       345 ~~t~l~~a~~~~~~~----~v~~Ll~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~-~ll~~~~~~~--------  404 (553)
                      |.||||.|+..|+.+    ++++|++.|++++.    .+..|+||||+|+..   |+.+++ .|++.|++++        
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            455666666666654    44455555666555    555666666666665   555555 3444444443        


Q ss_pred             ---CCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccC-------------CCCHHHHHHHhCCHHHHHHHHh---c
Q psy11230        405 ---ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL-------------GKDPLYIAVEMHNLSIVEQLLK---F  465 (553)
Q Consensus       405 ---~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~~~~~~v~~L~~---~  465 (553)
                         ..+..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence               23467999999999999999999999999999998886             9999999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHH--hCCHH-------HHHHHHhccCCc-------ccccccccCCCCcHHHHHHhhCCHHHH
Q psy11230        466 KANVNSSDQFGRTVLHLAVK--IQNVA-------ILECLLVNKADI-------NAKIISGIWKGYTPLHLAVESNNEAVI  529 (553)
Q Consensus       466 g~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~t~l~~A~~~~~~~~v  529 (553)
                      |++++.++..|+||||+|+.  .++.+       ++++|+++|+++       +..+.    .|.||||+|+..|+.+++
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~----~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH----QGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT----TSCCHHHHHHHTTCHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC----CCCCHHHHHHHhCCHHHH
Confidence            99999999999999999999  78888       999999999999       67766    899999999999999999


Q ss_pred             HHHHhcCCCC
Q psy11230        530 NKLLDYNPDL  539 (553)
Q Consensus       530 ~~Ll~~g~~~  539 (553)
                      ++|+++|+++
T Consensus       238 ~~Ll~~g~~~  247 (256)
T 2etb_A          238 RHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhCCCCC
Confidence            9999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.3e-34  Score=252.82  Aligned_cols=215  Identities=23%  Similarity=0.270  Sum_probs=182.1

Q ss_pred             cCCCCCchHHHHHhccccChHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcH
Q psy11230        306 KGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA----NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP  381 (553)
Q Consensus       306 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  381 (553)
                      .+..|.||||+|+..+..  ++++.|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         4 ~d~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEK--ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             ---CCCCTTHHHHHTTCS--SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CCCCCCchhHHHHHcCCh--hHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            456788888888887765  66666666544    688889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCchHH-HHHHcCCC------CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccccc-CCCCHHHHHHHh
Q psy11230        382 LHIAVQNGYVAIP-NLIRHGAN------VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ-LGKDPLYIAVEM  453 (553)
Q Consensus       382 l~~a~~~~~~~~~-~ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~  453 (553)
                      ||+|+..++.+++ .++..+.+      ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999988 56677655      466778899999999999999999999999999999997 999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230        454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN  524 (553)
Q Consensus       454 ~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~  524 (553)
                      |+.+++++|+++|++++.++..|.|||++|+.+++.+++++|+++|+++.....  +..|.|+.+.+....
T Consensus       162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~--~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP--ESEDEESYDTESEFT  230 (236)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCC--CCCTTTCCCCC----
T ss_pred             CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCC--ccchHHHHhhhcccc
Confidence            999999999999999999999999999999999999999999999998773222  126778876655443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=8.1e-34  Score=255.17  Aligned_cols=209  Identities=22%  Similarity=0.312  Sum_probs=162.1

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCC---CCCCCCccHHHHHHhc---CH-HHHHHHHHcCC
Q psy11230          1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAE----RGANIND---PFPDDGKSCLHIAATK---NI-RLVRLLLEYNV   69 (553)
Q Consensus         1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~   69 (553)
                      .+|..+.+|..|.||||.|+..|+.++|+.|++    .+.+++.   ..+..|.||||+|+..   |+ ++|++|++.|+
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            367889999999999999999999999998887    5555542   2377899999999986   88 99999999986


Q ss_pred             CC-------c----ccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCC--------------CCCcHHHHHHHcC
Q psy11230         70 DV-------N----AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK--------------EGDTPLHIAARTG  124 (553)
Q Consensus        70 ~~-------~----~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t~L~~A~~~g  124 (553)
                      +.       +    ..+..|+||||+|+..  ++.+++++|+++|++++.++.              .|+||||+|+..|
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  159 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIER--RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN  159 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence            53       2    2567899999999998  999999999999999999987              7999999999999


Q ss_pred             CHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccc
Q psy11230        125 NYKMVRVLID---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQ  199 (553)
Q Consensus       125 ~~~iv~~Ll~---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~--~~~~~~Ll~~~~~~~~  199 (553)
                      +.++|++|++   .|++++.++..|.|                         ||++|+..|+  .+..+.+         
T Consensus       160 ~~~~v~~Ll~~~~~gad~~~~d~~g~t-------------------------pLh~A~~~~~~~~~~~~~~---------  205 (273)
T 2pnn_A          160 QLAIVKFLLQNSWQPADISARDSVGNT-------------------------VLHALVEVADNTVDNTKFV---------  205 (273)
T ss_dssp             CHHHHHHHHHCSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSCHHHHHHH---------
T ss_pred             CHHHHHHHHhcccCCCCceeeCCCCCc-------------------------HHHHHHHccCcchhHHHHH---------
Confidence            9999999999   88888766666555                         5555565554  1111110         


Q ss_pred             hhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCc-------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy11230        200 CVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH-------AKDQLCKTALDIAVEHGHLKIVEFLLDHGAC  267 (553)
Q Consensus       200 ~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~-------~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~  267 (553)
                                            .+++++|++.|++++       .++..|.|||++|+..|+.+++++|+++|+.
T Consensus       206 ----------------------~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          206 ----------------------TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             ----------------------HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             ----------------------HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence                                  355666666666654       4788899999999999999999999998883

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.5e-33  Score=250.87  Aligned_cols=199  Identities=20%  Similarity=0.274  Sum_probs=168.5

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCccHHHHHHhc---CH-HHHHHHHHcCCCCccc----
Q psy11230         11 EGITLFQQAIVSSQTP----IAKLLAERGANIND----PFPDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAV----   74 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~----   74 (553)
                      .|.||||.|+..|+.+    ++++|++.|++++.    . +..|.||||+|+..   |+ ++|++|++.|++++..    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3889999999999997    66788889999987    5 88999999999999   99 9999999998877643    


Q ss_pred             -------CCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC-------------CCcHHHHHHHcCCHHHHHHHHh
Q psy11230         75 -------DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-------------GDTPLHIAARTGNYKMVRVLID  134 (553)
Q Consensus        75 -------~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~L~~A~~~g~~~iv~~Ll~  134 (553)
                             +..|+||||+|+..  ++.+++++|+++|++++.++..             |+||||+|+..|+.++|++|++
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEK--RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                   37899999999998  9999999999999999999886             9999999999999999999999


Q ss_pred             ---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCccchhccccccCC
Q psy11230        135 ---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYE--MKNFPAIELFLKYGVNVEQCVCHENVKHG  209 (553)
Q Consensus       135 ---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~  209 (553)
                         .|++++.++..|+|                         |||+|+.  .++.+..+.+                   
T Consensus       158 ~~~~ga~~n~~d~~g~T-------------------------pLh~A~~~~~~~~~~~~~~-------------------  193 (256)
T 2etb_A          158 NPHQPASLEATDSLGNT-------------------------VLHALVMIADNSPENSALV-------------------  193 (256)
T ss_dssp             CSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSCHHHHHHH-------------------
T ss_pred             ccccCCCcCccCCCCCC-------------------------HHHHHHHcccCCchhhHHH-------------------
Confidence               88888766666555                         4555555  4555522211                   


Q ss_pred             chhhHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy11230        210 GQLLLHLVRNGHQNAVKLILEKGANV-------HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV  268 (553)
Q Consensus       210 ~~~l~~a~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~  268 (553)
                                  .+++++|+++|+++       +.++..|.|||++|+..|+.+++++|+++|...
T Consensus       194 ------------~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          194 ------------IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             ------------HHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence                        24677777777777       788999999999999999999999999987643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=3.8e-32  Score=242.55  Aligned_cols=194  Identities=24%  Similarity=0.301  Sum_probs=158.4

Q ss_pred             CCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccC----CCCCcHHHHHH---HcCCchHH-HHHHcC----------
Q psy11230        343 DENKTPLHIAIESQCWDA----VSLLVKHGADVNVID----NQGQMPLHIAV---QNGYVAIP-NLIRHG----------  400 (553)
Q Consensus       343 ~~~~t~l~~a~~~~~~~~----v~~Ll~~~~~~~~~~----~~~~~~l~~a~---~~~~~~~~-~ll~~~----------  400 (553)
                      ..+.++|+.|+..|+.+.    +++|++.|.+++..+    ..|+||||+|+   ..|+.+++ .|++.|          
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            345666777777777663    333344666666544    45677777766   45666666 344443          


Q ss_pred             -CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc--------------cCCCCHHHHHHHhCCHHHHHHHHh-
Q psy11230        401 -ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART--------------QLGKDPLYIAVEMHNLSIVEQLLK-  464 (553)
Q Consensus       401 -~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~~~~~~v~~L~~-  464 (553)
                       ..++..+..|+||||+|+..|+.+++++|+++|++++..+              ..|+||||+|+..|+.+++++|++ 
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence             3345556689999999999999999999999999999988              689999999999999999999999 


Q ss_pred             --cCCCCCCCCCCCCcHHHHHHHhCC---------HHHHHHHHhccCCc-------ccccccccCCCCcHHHHHHhhCCH
Q psy11230        465 --FKANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADI-------NAKIISGIWKGYTPLHLAVESNNE  526 (553)
Q Consensus       465 --~g~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~~~~~~t~l~~A~~~~~~  526 (553)
                        +|++++.++..|+||||+|+..++         .+++++|+++|+++       +..+.    .|.||||+|+..|+.
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~----~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN----DGLSPLMMAAKTGKI  238 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT----TSCCHHHHHHHTTCH
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC----CCCCHHHHHHHcCCH
Confidence              999999999999999999999887         79999999999998       44555    899999999999999


Q ss_pred             HHHHHHHhcCCCCC
Q psy11230        527 AVINKLLDYNPDLD  540 (553)
Q Consensus       527 ~~v~~Ll~~g~~~~  540 (553)
                      ++|++|+++|+++.
T Consensus       239 ~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          239 GIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcc
Confidence            99999999998643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.7e-32  Score=244.91  Aligned_cols=203  Identities=19%  Similarity=0.246  Sum_probs=163.9

Q ss_pred             CCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCCCC---CCCCccHHHHHH---hcCH-HHHHHHHHcCCC-------
Q psy11230          9 NKEGITLFQQAIVSSQTPI----AKLLAERGANINDPF---PDDGKSCLHIAA---TKNI-RLVRLLLEYNVD-------   70 (553)
Q Consensus         9 ~~~g~~~l~~A~~~g~~~~----v~~Ll~~g~~~~~~~---~~~~~~~l~~A~---~~~~-~~v~~Ll~~~~~-------   70 (553)
                      +..|.|+||.||..|+.+.    +++|++.|++++...   +..|.||||+|+   +.|+ ++|++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4578999999999999995    555555999988652   267999999999   7788 999999998754       


Q ss_pred             ----CcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC--------------CCCCcHHHHHHHcCCHHHHHHH
Q psy11230         71 ----VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN--------------KEGDTPLHIAARTGNYKMVRVL  132 (553)
Q Consensus        71 ----~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~L~~A~~~g~~~iv~~L  132 (553)
                          .+..+..|+||||+|+..  ++.+++++|+++|++++.++              ..|+||||+|+..|+.++|++|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIER--RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHc--CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                445556899999999998  99999999999999999998              6899999999999999999999


Q ss_pred             Hh---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccchhcccccc
Q psy11230        133 ID---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQCVCHENVK  207 (553)
Q Consensus       133 l~---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~~  207 (553)
                      ++   .|++++.++..|.|                         |||+|+..|+  .+..+.                  
T Consensus       160 l~~~~~ga~~~~~d~~g~T-------------------------pLh~A~~~~~~~~~~~~~------------------  196 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNT-------------------------VLHALVAIADNTRENTKF------------------  196 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSSHHHHHH------------------
T ss_pred             HhccccCCCCcccCCCCCc-------------------------HHHHHHHhccCchhHHHH------------------
Confidence            99   88888776666655                         4555555443  221111                  


Q ss_pred             CCchhhHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy11230        208 HGGQLLLHLVRNGHQNAVKLILEKGANV-------HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD  269 (553)
Q Consensus       208 ~~~~~l~~a~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~  269 (553)
                                   ..+++++|+++|+++       +.++..|.|||++|+..|+.+++++|+++|....
T Consensus       197 -------------~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          197 -------------VTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             -------------HHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                         135667777777666       6688999999999999999999999999876543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.8e-31  Score=224.00  Aligned_cols=162  Identities=25%  Similarity=0.245  Sum_probs=152.1

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      +|.+|..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            5789999999999999999999999999999999887 8899999999999999 9999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCC
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD  163 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~  163 (553)
                      +|+..  ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.                   
T Consensus       107 ~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-------------------  165 (192)
T 2rfm_A          107 WSIIF--GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL-------------------  165 (192)
T ss_dssp             HHHHH--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-------------------
T ss_pred             HHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-------------------
Confidence            99999  999999999999999999999999999999999999999999999888765554                   


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230        164 INVENNFGKTAFQMAYEMKNFPAIELFLKYG  194 (553)
Q Consensus       164 ~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~  194 (553)
                            .|.||+++|+..|+.+++++|++.+
T Consensus       166 ------~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          166 ------TGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             ------TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence                  4566788899999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.3e-31  Score=219.42  Aligned_cols=143  Identities=27%  Similarity=0.275  Sum_probs=126.1

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230        403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL  482 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~  482 (553)
                      ++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  108 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY  108 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCC
Q psy11230        483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA  549 (553)
Q Consensus       483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  549 (553)
                      |+..++.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|+++|+++..++..|.||
T Consensus       109 A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          109 AVRGNHVKCVEALLARGADLTTEAD----SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999999998877    89999999999999999999999999999999998887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.5e-30  Score=219.01  Aligned_cols=159  Identities=26%  Similarity=0.283  Sum_probs=120.8

Q ss_pred             cCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHH
Q psy11230        374 IDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE  452 (553)
Q Consensus       374 ~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~  452 (553)
                      ++..|+||||+|+..|+.+++ .+++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII  110 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            334444444444444444444 3344445555566667788888888888888888888888888888888888888888


Q ss_pred             hCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230        453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL  532 (553)
Q Consensus       453 ~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  532 (553)
                      .|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|
T Consensus       111 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL----TGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCcHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888887776    788888888888888888888


Q ss_pred             HhcC
Q psy11230        533 LDYN  536 (553)
Q Consensus       533 l~~g  536 (553)
                      +++|
T Consensus       187 l~~~  190 (192)
T 2rfm_A          187 TEVR  190 (192)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            8764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=7.6e-31  Score=234.89  Aligned_cols=187  Identities=23%  Similarity=0.336  Sum_probs=163.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-CCCCCCCCCChHHHHHH---
Q psy11230        346 KTPLHIAIESQCWDAVSLLVKHGAD--VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-NVNARNKYAKTPLHIAV---  418 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~~~~~~~~~~~~l~~a~---  418 (553)
                      .++++.|+..++.+.++.+++.+.+  ++..|..|+||||+|+..|+.+++ .|++.|. +++..+..|.|||++|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            4567778888888888887776555  677778888888888888888877 5667776 88888888888888888   


Q ss_pred             --hcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy11230        419 --EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL  496 (553)
Q Consensus       419 --~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  496 (553)
                        ..++.+++++|++.|...+..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence              668889999999999988888889999999999999999999999999999999999999999999999999999999


Q ss_pred             h-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        497 V-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       497 ~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      + .|++++..+.    .|.||||+|+..|+.+++++|++++
T Consensus       237 ~~~gad~~~~d~----~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          237 AVPSCDISLTDR----DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TSTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             hcCCCCCcCcCC----CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9 8999998887    8999999999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.2e-30  Score=212.04  Aligned_cols=159  Identities=24%  Similarity=0.325  Sum_probs=144.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhh
Q psy11230         10 KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASI   88 (553)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~   88 (553)
                      ....|||+.|+..|+.++|++|++.|++++.. +..|.||||+|+. |+ +++++|++.|++++..+..|+||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45679999999999999999999999999888 8999999999999 87 999999999999999999999999999999


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN  168 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~  168 (553)
                        ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++.                        ++..+
T Consensus        81 --~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------~~~~~  134 (162)
T 1ihb_A           81 --GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------VGHRN  134 (162)
T ss_dssp             --TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------TTCCC
T ss_pred             --CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------CCCcC
Confidence              9999999999999999999999999999999999999999999998873                        22344


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy11230        169 NFGKTAFQMAYEMKNFPAIELFLKYGVN  196 (553)
Q Consensus       169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~  196 (553)
                      ..|.||+++|+..|+.+++++|+++|++
T Consensus       135 ~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          135 HKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            5567788899999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=7.1e-30  Score=211.03  Aligned_cols=159  Identities=33%  Similarity=0.471  Sum_probs=145.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      ....+.++|++|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            4556789999999999999999999999999988 8899999999999999 9999999999999999999999999999


Q ss_pred             hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccc
Q psy11230         87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV  166 (553)
Q Consensus        87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~  166 (553)
                      ..  ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++.                      
T Consensus        89 ~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------  144 (169)
T 2y1l_E           89 LF--GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK----------------------  144 (169)
T ss_dssp             HT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------
T ss_pred             Hc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------
Confidence            99  999999999999999999999999999999999999999999999888765554                      


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230        167 ENNFGKTAFQMAYEMKNFPAIELFLKYG  194 (553)
Q Consensus       167 ~~~~~~~~l~~A~~~g~~~~~~~Ll~~~  194 (553)
                         .|.||+++|+..|+.+++++|++.|
T Consensus       145 ---~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          145 ---FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ---TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ---CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence               4567788899999999999998765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.1e-29  Score=209.89  Aligned_cols=152  Identities=37%  Similarity=0.472  Sum_probs=114.4

Q ss_pred             HHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHH
Q psy11230        381 PLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV  459 (553)
Q Consensus       381 ~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v  459 (553)
                      +++.|+..|+.+++ .++++|.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   96 (169)
T 2y1l_E           17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV   96 (169)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            33333333333333 23333444444555667777778888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      ++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|+++|
T Consensus        97 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK----FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            888888888888888888888888888888888888888888887766    7888888888888888888888876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.3e-30  Score=210.71  Aligned_cols=154  Identities=27%  Similarity=0.324  Sum_probs=120.4

Q ss_pred             cHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHH
Q psy11230        380 MPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSI  458 (553)
Q Consensus       380 ~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~  458 (553)
                      +||+.|+..|+.+++ .++++|.+++..+..|+||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            344444444444443 2334444555556667788888888 88888888888888888888888899999999899999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC-cccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q psy11230        459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD-INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP  537 (553)
Q Consensus       459 v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  537 (553)
                      +++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++..+.    .|.||||+|+..|+.+++++|+++||
T Consensus        86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH----KGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999988888888888888999999998999999999988887 466665    78899999999999999999999887


Q ss_pred             C
Q psy11230        538 D  538 (553)
Q Consensus       538 ~  538 (553)
                      +
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=8.9e-30  Score=210.36  Aligned_cols=158  Identities=24%  Similarity=0.266  Sum_probs=128.0

Q ss_pred             CCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230        378 GQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL  456 (553)
Q Consensus       378 ~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  456 (553)
                      |.||||.|+..|+.+++ .+++.+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            45555555555555555 44455556666677778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|++++
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD----SGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888776    7888888888888888888888887


Q ss_pred             CCC
Q psy11230        537 PDL  539 (553)
Q Consensus       537 ~~~  539 (553)
                      +++
T Consensus       159 ~~~  161 (167)
T 3v31_A          159 LKL  161 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.4e-29  Score=209.18  Aligned_cols=159  Identities=19%  Similarity=0.201  Sum_probs=148.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      .|.||||.|+..|+.++|++|++.|.+++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+.. 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK-   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-
Confidence            5899999999999999999999999999888 8899999999999999 999999999999999999999999999999 


Q ss_pred             CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230         90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN  169 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~  169 (553)
                       ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++.                         
T Consensus        80 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------------------  133 (167)
T 3v31_A           80 -GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-------------------------  133 (167)
T ss_dssp             -TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------------------
T ss_pred             -CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-------------------------
Confidence             999999999999999999999999999999999999999999999888765554                         


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy11230        170 FGKTAFQMAYEMKNFPAIELFLKYGVNV  197 (553)
Q Consensus       170 ~~~~~l~~A~~~g~~~~~~~Ll~~~~~~  197 (553)
                      .|.||+++|+..|+.+++++|++++...
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          134 SGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            4567788899999999999999886543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.6e-29  Score=209.95  Aligned_cols=168  Identities=21%  Similarity=0.252  Sum_probs=152.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCC
Q psy11230        345 NKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKN  422 (553)
Q Consensus       345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~  422 (553)
                      +.+||+.|+..|+.+++++|++.+.+ ++..+..|+||||+|+..++.+++ .+++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999877 788889999999999999999988 6778999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230        423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI  502 (553)
Q Consensus       423 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  502 (553)
                      .+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCcH
Q psy11230        503 NAKIISGIWKGYTP  516 (553)
Q Consensus       503 ~~~~~~~~~~~~t~  516 (553)
                      ...+.    .|.||
T Consensus       162 ~~~~~----~~~~p  171 (172)
T 3v30_A          162 FQSNL----VPADP  171 (172)
T ss_dssp             SCC-----------
T ss_pred             hcccC----CCCCC
Confidence            87765    55555

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.9e-29  Score=210.74  Aligned_cols=164  Identities=20%  Similarity=0.261  Sum_probs=133.3

Q ss_pred             CcHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230        379 QMPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL  456 (553)
Q Consensus       379 ~~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  456 (553)
                      .++|+.|+..|+.+++ .+++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            3444444444444444 23333 345566677788888888888899999999999999988888899999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.|||++|+..++.+++++|+++|
T Consensus        86 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK----YGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT----TSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc----CCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999998888899999999999999999999999999888877    7889999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy11230        537 PDLDVKDKNG  546 (553)
Q Consensus       537 ~~~~~~~~~~  546 (553)
                      ++++..+.++
T Consensus       162 ~~~~~~~~~~  171 (179)
T 3f6q_A          162 QNLNRIPYKD  171 (179)
T ss_dssp             CCCSCBCCCC
T ss_pred             cCcccCCccc
Confidence            9888776654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=227.22  Aligned_cols=185  Identities=22%  Similarity=0.304  Sum_probs=162.3

Q ss_pred             hHHHHHhccccChHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCCCcHHHHHH---
Q psy11230        313 PLHLVVQRKSWNTTMFKTLLYHGAN--VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAV---  386 (553)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~---  386 (553)
                      +++.++..+..  +.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|. +++..+..|+|||+.|+   
T Consensus        79 ~l~~a~~~~~~--~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           79 DAHPELVRRHL--VTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             TCCHHHHHHHH--HHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             CCCHHHHHHHH--HHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            33444443332  444444444333  67789999999999999999999999999998 99999999999999999   


Q ss_pred             --HcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHH
Q psy11230        387 --QNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL  463 (553)
Q Consensus       387 --~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~  463 (553)
                        ..+..+++ .++..|...+..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence              44556666 677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Q psy11230        464 K-FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK  499 (553)
Q Consensus       464 ~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g  499 (553)
                      + .|++++.++..|.|||++|+..|+.+++++|++++
T Consensus       237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9 89999999999999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.1e-32  Score=238.86  Aligned_cols=186  Identities=18%  Similarity=0.175  Sum_probs=166.8

Q ss_pred             CCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCC
Q psy11230          2 DADVN---ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNL   77 (553)
Q Consensus         2 ~~~~~---~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~   77 (553)
                      |++++   ..+.+|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..|..
T Consensus         8 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~   86 (229)
T 2vge_A            8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANVNSPDSH   86 (229)
T ss_dssp             --CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            45544   45667778899999999999999999999999988 9999999999999999 9999999999999999999


Q ss_pred             CCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH-
Q psy11230         78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIA--ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-  153 (553)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~-  153 (553)
                      |+||||+|+..  ++.+++++|++.|++++.++ ..|+||||+|  +..|+.+++++|++.|++++..+..+.||++.+ 
T Consensus        87 g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~  164 (229)
T 2vge_A           87 GWTPLHCAASC--NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS  164 (229)
T ss_dssp             CCCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBC
T ss_pred             CCCHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHh
Confidence            99999999998  99999999999999999987 6999999999  999999999999999999999999998888754 


Q ss_pred             ----HHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHH
Q psy11230        154 ----VGILLRKGAD--INVENNFGKTAFQMAYEMKNFPAIELF  190 (553)
Q Consensus       154 ----~~~l~~~~~~--~~~~~~~~~~~l~~A~~~g~~~~~~~L  190 (553)
                          .+++++.|.+  ++.++..|.|||++|+..|+.++++..
T Consensus       165 ~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             hccccccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence                3456666777  667788899999999999998888753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.8e-29  Score=201.49  Aligned_cols=150  Identities=29%  Similarity=0.305  Sum_probs=139.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcC
Q psy11230         12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKT   90 (553)
Q Consensus        12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~   90 (553)
                      +.|+|+.|+..|+.++|++|++.|++++ . +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+..  
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE--   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--
Confidence            4689999999999999999999999876 3 7889999999999999 999999999999999999999999999999  


Q ss_pred             CChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCC
Q psy11230         91 RDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNF  170 (553)
Q Consensus        91 ~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~  170 (553)
                      ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++.                         .
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-------------------------~  132 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-------------------------F  132 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------------------T
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-------------------------C
Confidence            999999999999999999999999999999999999999999999988765554                         4


Q ss_pred             CCCHHHHHHHcCCHHHHHHH
Q psy11230        171 GKTAFQMAYEMKNFPAIELF  190 (553)
Q Consensus       171 ~~~~l~~A~~~g~~~~~~~L  190 (553)
                      |.||+++|+..|+.+++++|
T Consensus       133 g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHh
Confidence            56778889999999999886

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=9.4e-33  Score=254.95  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHH
Q psy11230        344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL  396 (553)
Q Consensus       344 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~l  396 (553)
                      .+.++|++|+..|+.+++++|++.|   ...+..+.+++..|-.+|..++..+
T Consensus       318 ~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          318 DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------------------
T ss_pred             CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHH
Confidence            3457899999999999999998864   4556677888888888888777643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=2e-29  Score=199.86  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=129.6

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCC-CC
Q psy11230          2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNL-GN   79 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~-~~   79 (553)
                      ++++|.+|..|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+. |+ +++++|++.|++++..+.. |+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            6899999999999999999999999999999999999988 8999999999999 98 9999999999999999999 99


Q ss_pred             cHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230         80 TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH  138 (553)
Q Consensus        80 t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  138 (553)
                      ||||+|+..  ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++
T Consensus        80 t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHH--TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999  999999999999999999999999999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.8e-31  Score=227.50  Aligned_cols=186  Identities=16%  Similarity=0.095  Sum_probs=91.3

Q ss_pred             HHHHhCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCC
Q psy11230        329 KTLLYHGANVNVKDD---ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA  405 (553)
Q Consensus       329 ~~l~~~~~~~~~~~~---~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~  405 (553)
                      +.|++.+.+++..+.   .+.|+|+.|+..|+.+++++|++.|++++..+..                            
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~----------------------------   53 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----------------------------   53 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT----------------------------
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC----------------------------
Confidence            344555555443332   2334555566666666666666655555555444                            


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH-
Q psy11230        406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLA-  483 (553)
Q Consensus       406 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A-  483 (553)
                          |+||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|.|||++| 
T Consensus        54 ----g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  129 (229)
T 2vge_A           54 ----GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD  129 (229)
T ss_dssp             ----SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC
T ss_pred             ----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence                4555555555555555555555555555555555555555555555555555555555555443 3555555555 


Q ss_pred             -HHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC--CCCCCCCCCCCCCCC
Q psy11230        484 -VKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD--LDVKDKNGNTALHPS  553 (553)
Q Consensus       484 -~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a  553 (553)
                       +..++.+++++|+++|++++..+.    .|.||++.++..+.   +++|++.|++  ++.+|.+|.||||+|
T Consensus       130 a~~~~~~~~v~~Ll~~ga~~~~~~~----~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A  195 (229)
T 2vge_A          130 PYREGYADCATYLADVEQSMGLMNS----GAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA  195 (229)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTTTSGG----GEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE
T ss_pred             HHhcChHHHHHHHHHcCCCcccccC----CchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH
Confidence             555555555555555555555443    44455443333321   1344555554  444555555555543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.8e-28  Score=198.94  Aligned_cols=122  Identities=30%  Similarity=0.437  Sum_probs=106.3

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230        407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI  486 (553)
Q Consensus       407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~  486 (553)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45577888888888888888888888888888888888899999888888899999888888888888888999999988


Q ss_pred             CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230        487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL  532 (553)
Q Consensus       487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  532 (553)
                      ++.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|
T Consensus       111 ~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          111 NHQEVVELLIKYGADVHTQSK----FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHh
Confidence            888999999988888888776    788999999999998888887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.6e-29  Score=205.62  Aligned_cols=160  Identities=28%  Similarity=0.321  Sum_probs=140.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHH
Q psy11230          7 ATNKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHT   84 (553)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~   84 (553)
                      ..|+.|.|+|+.|+..|+.++|++|++. +.+++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            3578899999999999999999999994 4455554 7788999999999999 99999999999999999999999999


Q ss_pred             HHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCc
Q psy11230         85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI  164 (553)
Q Consensus        85 a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~  164 (553)
                      |+..  ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|                
T Consensus        82 A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t----------------  143 (165)
T 3twr_A           82 ACSY--GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT----------------  143 (165)
T ss_dssp             HHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------------
T ss_pred             HHHc--CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC----------------
Confidence            9998  9999999999999999999999999999999999999999999999988777666655                


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy11230        165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGV  195 (553)
Q Consensus       165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~  195 (553)
                               |+++|.. |+.+++++|++.|+
T Consensus       144 ---------~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          144 ---------PLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ---------TGGGSCT-TCHHHHHHHHTC--
T ss_pred             ---------hhHhHhc-CChHHHHHHhhccc
Confidence                     5556555 88899999988764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=6.1e-29  Score=204.87  Aligned_cols=160  Identities=29%  Similarity=0.331  Sum_probs=129.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230        342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQK  421 (553)
Q Consensus       342 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  421 (553)
                      +..+.++|+.|+..|+.+++++|++.                               .+.+++..+..|.||||+|+..|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-------------------------------~~~~~~~~~~~g~t~L~~A~~~~   53 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTV-------------------------------QSVNCRDIEGRQSTPLHFAAGYN   53 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCT-------------------------------TTTTCCCTTTTCCCHHHHHHHTT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHc-------------------------------CCCCccccccCCCCHHHHHHHcC
Confidence            34455666666666666666666553                               22334455666788899999999


Q ss_pred             CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC
Q psy11230        422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD  501 (553)
Q Consensus       422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  501 (553)
                      +.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus        54 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q psy11230        502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP  537 (553)
Q Consensus       502 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  537 (553)
                      ++..+.    .|.|||++|+. |+.+++++|+++|+
T Consensus       134 ~~~~~~----~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          134 PTKKNR----DGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCT----TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CcccCC----CCCChhHhHhc-CChHHHHHHhhccc
Confidence            988877    88999999777 88899999999886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-29  Score=221.77  Aligned_cols=171  Identities=20%  Similarity=0.176  Sum_probs=126.9

Q ss_pred             CCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230        378 GQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL  456 (553)
Q Consensus       378 ~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  456 (553)
                      |.|||+.|+..+..+++ .++.+|++++.. ..|.||||.|+..|+.+++++|++.|++++..+..|+||||+|+..|+.
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   83 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT   83 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            44555555555544444 444555555433 4567999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCC-cHHHHH--HhhCCHHHHHHHH
Q psy11230        457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLA--VESNNEAVINKLL  533 (553)
Q Consensus       457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~-t~l~~A--~~~~~~~~v~~Ll  533 (553)
                      +++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+.    .|. ||||+|  +..|+.+++++|+
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY----SDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS----SSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC----CCCcchHHHHHHhhhccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998876    555 999999  8889999999999


Q ss_pred             hcCCCCCCC---------CCCCCCCCCCC
Q psy11230        534 DYNPDLDVK---------DKNGNTALHPS  553 (553)
Q Consensus       534 ~~g~~~~~~---------~~~~~t~l~~a  553 (553)
                      ++|++++..         +..+.+|+++|
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa  188 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELP  188 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCC
T ss_pred             HhhhcccccccceEEEEeccCCCCCCccc
Confidence            999988877         45577777664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.5e-28  Score=203.12  Aligned_cols=164  Identities=25%  Similarity=0.261  Sum_probs=153.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230        344 ENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQK  421 (553)
Q Consensus       344 ~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~  421 (553)
                      .+.++|+.|+..|+.+++++|++. +.+++..+..|+||||+|+..++.+++ .|++.|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            467899999999999999999998 677888999999999999999999988 677899999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC
Q psy11230        422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD  501 (553)
Q Consensus       422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  501 (553)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy11230        502 INAKII  507 (553)
Q Consensus       502 ~~~~~~  507 (553)
                      ++....
T Consensus       164 ~~~~~~  169 (179)
T 3f6q_A          164 LNRIPY  169 (179)
T ss_dssp             CSCBCC
T ss_pred             cccCCc
Confidence            998654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=6.5e-28  Score=196.73  Aligned_cols=152  Identities=18%  Similarity=0.234  Sum_probs=139.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         12 GITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        12 g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      |.|+|+.|+..|+.++|++|++. +.+++.. +..|.||||+ +..|+ +++++|++.|++++..+..|.||||+|+.. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-
Confidence            67999999999999999999998 3477777 8899999999 88888 999999999999999999999999999998 


Q ss_pred             CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230         90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN  169 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~  169 (553)
                       ++.+++++|++.|++++.++..|+||||+|+..|+.+++++|++. ++++.+                         +.
T Consensus        79 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-------------------------~~  131 (156)
T 1bd8_A           79 -GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-------------------------DA  131 (156)
T ss_dssp             -TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-------------------------CT
T ss_pred             -CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-------------------------CC
Confidence             999999999999999999999999999999999999999999988 666544                         45


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        170 FGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       170 ~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      .|.||+++|+..|+.+++++|+++
T Consensus       132 ~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            567788899999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=8.6e-28  Score=196.00  Aligned_cols=150  Identities=25%  Similarity=0.341  Sum_probs=115.7

Q ss_pred             cHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHH
Q psy11230        380 MPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS  457 (553)
Q Consensus       380 ~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  457 (553)
                      ++|+.|+..|+.+++ .+++. +.+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            344444444444433 22222 22455666677788888 7788888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       458 ~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++..+.    .|.|||++|+..|+.+++++|+++
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~----~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA----RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT----TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888 88887766    788888888888888888888874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.5e-28  Score=199.97  Aligned_cols=144  Identities=22%  Similarity=0.193  Sum_probs=120.5

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc-HHHH
Q psy11230        404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT-VLHL  482 (553)
Q Consensus       404 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t-~l~~  482 (553)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345667899999999999999999999999999999999999999995 99999999999999999999999999 9999


Q ss_pred             HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy11230        483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP  552 (553)
Q Consensus       483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  552 (553)
                      |+..++.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDA----WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            9999999999999999999999887    89999999999999999999999999999999999998763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.2e-28  Score=192.92  Aligned_cols=134  Identities=21%  Similarity=0.231  Sum_probs=128.7

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC-CCc
Q psy11230        400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRT  478 (553)
Q Consensus       400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~-~~t  478 (553)
                      +.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46788889999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      |||+|+..++.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDA----WGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSS----SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999887    899999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.1e-28  Score=200.69  Aligned_cols=145  Identities=21%  Similarity=0.260  Sum_probs=119.9

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc-H
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT-V   81 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t-~   81 (553)
                      .++..+..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+ .|+ +++++|++.|++++..+..|+| |
T Consensus         4 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             CccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            45678999999999999999999999999999999988 889999999996 677 9999999999999999999999 9


Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV  152 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~  152 (553)
                      ||+|+..  ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||.+-
T Consensus        82 L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           82 VHDAARE--GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHHH--TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHHHC--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            9999999  99999999999999999999999999999999999999999999999999999999888653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.4e-30  Score=226.76  Aligned_cols=207  Identities=16%  Similarity=0.113  Sum_probs=148.3

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230        343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQK  421 (553)
Q Consensus       343 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~  421 (553)
                      ..|.|||+.|+..++.+.++.|+++|++++.. ..+.|||+.|+..|+.+++ .|++.|.+++.++..|+||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45889999999999999999999999999864 7788999999999999988 677889999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHhCCHHHHHHHHhc
Q psy11230        422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR-TVLHLA--VKIQNVAILECLLVN  498 (553)
Q Consensus       422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~-t~l~~A--~~~~~~~~~~~Ll~~  498 (553)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..+. ||+++|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988777 999999  788999999999999


Q ss_pred             cCCccccccc-----ccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC------CCCCCCCCCCCCC
Q psy11230        499 KADINAKIIS-----GIWKGYTPLHLAVESNNEAVINKLLDYNPDL------DVKDKNGNTALHP  552 (553)
Q Consensus       499 g~~~~~~~~~-----~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~~t~l~~  552 (553)
                      |++++..+..     .++.+.+++++|.+.|.  +++.|.+.+.+.      ...+..|.+|.++
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y  224 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNL  224 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence            9988875331     13478899998888887  556666655541      3445556666543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.3e-31  Score=244.65  Aligned_cols=262  Identities=12%  Similarity=0.058  Sum_probs=142.3

Q ss_pred             hhHHHHH-cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC----cccccCCHHHHHHHhCC
Q psy11230        212 LLLHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD----SLQFIHSPLHLAIEKQH  286 (553)
Q Consensus       212 ~l~~a~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~----~~~~~~~~l~~a~~~~~  286 (553)
                      .++.+.. .++.++++++++.|.+.       .||||+|+..|+.+++++|++.|....    ....+.+||++|+..|+
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~  140 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH  140 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence            4445543 57788888888877654       488888888888888888888876221    11124567777777777


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230        287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK  366 (553)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~  366 (553)
                      .+++++|++.+++....+                                 ++  +.+ .||||+|+..|+.+++++|++
T Consensus       141 ~eiv~~Ll~~gad~~~~~---------------------------------i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          141 LHVLNRLCELAPTEIMAM---------------------------------IQ--AEN-YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             HHHHHHHHHSCTTTHHHH---------------------------------HS--HHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccc---------------------------------cC--CCC-CCHHHHHHHCCCHHHHHHHHH
Confidence            777777777642110000                                 01  111 567777777777777777777


Q ss_pred             CCCCccc--cCCCCCcHHHHHH-HcCCchHHHHH-HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccC
Q psy11230        367 HGADVNV--IDNQGQMPLHIAV-QNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL  442 (553)
Q Consensus       367 ~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  442 (553)
                      +|++++.  .+..|.||||+|+ ..|+.++++++ +.|.       .|.|||+.|+.+|+.+++++|+++|++++..+. 
T Consensus       185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~-  256 (376)
T 2aja_A          185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD-  256 (376)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT-
T ss_pred             cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH-
Confidence            7777665  5666677777777 77777776444 3221       256777777777777777777777666544332 


Q ss_pred             CCCHHHHHHHhCC---------------------------HHHHHHHHhcCC-----CCCCCCCCCCcHHHHHHHhCCHH
Q psy11230        443 GKDPLYIAVEMHN---------------------------LSIVEQLLKFKA-----NVNSSDQFGRTVLHLAVKIQNVA  490 (553)
Q Consensus       443 ~~t~l~~A~~~~~---------------------------~~~v~~L~~~g~-----~~~~~~~~~~t~l~~A~~~~~~~  490 (553)
                         +++.|+.+|+                           .+.+++|++.+.     +.......+.+||++|+..|+.+
T Consensus       257 ---~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e  333 (376)
T 2aja_A          257 ---AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG  333 (376)
T ss_dssp             ---TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTT
T ss_pred             ---HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHH
Confidence               3333333333                           344555554211     01111223456677777777777


Q ss_pred             HHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230        491 ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD  534 (553)
Q Consensus       491 ~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  534 (553)
                      ++++|+++|.   ..+    |.++|++.+|..+|..++++.-++
T Consensus       334 ~v~lLl~~~~---v~~----~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          334 ACALLLSIPS---VLA----LTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             HHHHHTTSHH---HHH----SCC---------------------
T ss_pred             HHHHHHcChH---HHH----HHHHhccccccccccccHHHHHHH
Confidence            7777766541   111    256667777777776666655443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.9e-26  Score=182.67  Aligned_cols=127  Identities=28%  Similarity=0.366  Sum_probs=120.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy11230          7 ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTV   85 (553)
Q Consensus         7 ~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a   85 (553)
                      ..+..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45677899999999999999999999999999988 8999999999999999 999999999999999999999999999


Q ss_pred             HhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy11230         86 ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG  136 (553)
Q Consensus        86 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  136 (553)
                      +..  ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        88 ~~~--~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFI--GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHc--CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999  9999999999999999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=5.1e-26  Score=178.33  Aligned_cols=126  Identities=38%  Similarity=0.571  Sum_probs=121.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230        409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN  488 (553)
Q Consensus       409 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~  488 (553)
                      +|+|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      .+++++|+++|++++..+.    .|.|||++|+..|+.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999998877    899999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=5.2e-26  Score=178.28  Aligned_cols=125  Identities=40%  Similarity=0.583  Sum_probs=121.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      +|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+.. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-
Confidence            5899999999999999999999999999887 8899999999999999 999999999999999999999999999998 


Q ss_pred             CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230         90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH  138 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  138 (553)
                       ++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++
T Consensus        79 -~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 -GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence             999999999999999999999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=5.9e-26  Score=179.82  Aligned_cols=126  Identities=35%  Similarity=0.443  Sum_probs=119.7

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230        407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI  486 (553)
Q Consensus       407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~  486 (553)
                      ...+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34577999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      ++.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~----~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDK----FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCC----CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999998877    8999999999999999999999987

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.4e-27  Score=195.55  Aligned_cols=158  Identities=14%  Similarity=0.187  Sum_probs=123.6

Q ss_pred             cHHHHHHHcCCchHH-HHHHcCCCCCCCC-CCCChHHHHHHhcCCH----HHHHHHHhCCCCccccccCCCCHHHHHHHh
Q psy11230        380 MPLHIAVQNGYVAIP-NLIRHGANVNARN-KYAKTPLHIAVEQKNM----SALNYLLEHGAQVDARTQLGKDPLYIAVEM  453 (553)
Q Consensus       380 ~~l~~a~~~~~~~~~-~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~  453 (553)
                      ++++.|+..|..+.+ .++..+  ++..+ ..|+||||+|+.+++.    +++++|+++|++++.++..|+||||+|+..
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            445555555555444 233322  23333 4577888888888764    589999999999999999999999999988


Q ss_pred             CC------HHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHh-----CCHHHHHHHHh-ccCCcccccccccCCCCcHHHHH
Q psy11230        454 HN------LSIVEQLLKFKANVNSSDQFGR-TVLHLAVKI-----QNVAILECLLV-NKADINAKIISGIWKGYTPLHLA  520 (553)
Q Consensus       454 ~~------~~~v~~L~~~g~~~~~~~~~~~-t~l~~A~~~-----~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A  520 (553)
                      |+      .+++++|+++|++++.+|..|. ||||+|+..     +..+++++|++ +|++++..+.    .|.||||+|
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~----~G~TpL~~A  161 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK----WGLTALEFV  161 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT----TSCCHHHHH
T ss_pred             CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC----CCCCHHHHH
Confidence            86      6789999999999999999999 999999984     34678999999 8999999888    899999999


Q ss_pred             HhhCCHHHHHHHHhcCCCCCCCC
Q psy11230        521 VESNNEAVINKLLDYNPDLDVKD  543 (553)
Q Consensus       521 ~~~~~~~~v~~Ll~~g~~~~~~~  543 (553)
                      ++.|+.++|++|+++....++++
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHcCCHHHHHHHHHHHHHHhccc
Confidence            99999999999998766655554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=9.7e-27  Score=184.83  Aligned_cols=133  Identities=23%  Similarity=0.255  Sum_probs=120.9

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230          2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT   80 (553)
Q Consensus         2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t   80 (553)
                      |||+ .+|..|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            7888 89999999999999999999999999999999988 8999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230         81 VLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH  138 (553)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  138 (553)
                      |||+|+..  ++.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+.+..
T Consensus        79 ~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           79 PLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999998  999999999999999999999999999999999999999988876543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3.5e-26  Score=190.13  Aligned_cols=154  Identities=14%  Similarity=0.102  Sum_probs=133.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-----HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230         12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-----RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus        12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-----~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      +.++|+.|+..|+.+.++.+++.+.+  ...+..|.||||+|+.+|+     +++++|++.|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            56899999999999999999998764  3312679999999999884     5999999999999999999999999999


Q ss_pred             hhcCCC------hHHHHHHhhCCCCccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCcHHHHH
Q psy11230         87 SIKTRD------PTAVEILKTNRANVNIKNKEGD-TPLHIAARTG-----NYKMVRVLID-HGAHTECKNHQGYNALHVA  153 (553)
Q Consensus        87 ~~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~L~~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~~  153 (553)
                      ..  ++      .+++++|+++|++++.+|..|+ ||||+|+..+     +.+++++|++ +|++++.++.         
T Consensus        84 ~~--~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~---------  152 (186)
T 3t8k_A           84 QG--GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK---------  152 (186)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT---------
T ss_pred             Hc--CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC---------
Confidence            98  54      5889999999999999999999 9999999954     4579999998 8888765554         


Q ss_pred             HHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230        154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG  194 (553)
Q Consensus       154 ~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~  194 (553)
                                      .|.|||++|+..|+.+++++|.++.
T Consensus       153 ----------------~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          153 ----------------WGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             ----------------TSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ----------------CCCCHHHHHHHcCCHHHHHHHHHHH
Confidence                            4566778889999999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=8.9e-26  Score=179.25  Aligned_cols=134  Identities=28%  Similarity=0.352  Sum_probs=114.9

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11230        400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTV  479 (553)
Q Consensus       400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~  479 (553)
                      |+++ .++..|+||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4556 677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        480 LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       480 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      ||+|+..++.+++++|+++|++++..+.    .|.|||++|+..+..+++++|.+.+..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNI----FGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHhhccHHHHHhhccccccC
Confidence            9999999999999999999999988877    899999999999999998888877654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=3.1e-26  Score=200.86  Aligned_cols=170  Identities=25%  Similarity=0.276  Sum_probs=135.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      .+.+++..++..|+.+.++.+...+.++    +..|.||||+|+..|+ +++++|++ |++++..+..|+||||+|+.. 
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-   87 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-   87 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-
T ss_pred             CCccHHHHHHHcCCCccccccccccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-
Confidence            4555555556666665555544444333    3467888999998888 88888888 888888888899999999888 


Q ss_pred             CCChHHHHHHhhCCCCccCCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230         90 TRDPTAVEILKTNRANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN  168 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~  168 (553)
                       ++.+++++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++.++..|.||||+|++...         .
T Consensus        88 -g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~---------~  157 (244)
T 3ui2_A           88 -GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK---------T  157 (244)
T ss_dssp             -TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT---------T
T ss_pred             -CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh---------c
Confidence             88899999999999888888 778899999999999999999999999998888889999988876432         2


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy11230        169 NFGKTAFQMAYEMKNFPAIELFLKYGVN  196 (553)
Q Consensus       169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~  196 (553)
                      ..+.+|+++|+..|+.+++++|++.+.+
T Consensus       158 ~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            4578999999999999999999986443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4.8e-25  Score=191.10  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=118.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHc-CCCCcccCCCCCcHH
Q psy11230          5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEY-NVDVNAVDNLGNTVL   82 (553)
Q Consensus         5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~-~~~~~~~~~~~~t~l   82 (553)
                      ++.++..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++. |++++..+..|+|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            3556788999999999999999999999999999988 8899999999999999 999999999 999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy11230         83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG  146 (553)
Q Consensus        83 ~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  146 (553)
                      |+|+..  ++.+++++|+++|++++.++..|.|||++|+..|+.++++.|++.|+.....+..+
T Consensus       145 ~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWK--GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHH--TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHHc--CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999  99999999999999999999999999999999999999999999999877665544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.5e-24  Score=167.14  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=94.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA   86 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~   86 (553)
                      .++.|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..|..|+||||+|+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            3567888888888888888888888888888877 7788888888888888 8888888888888888888888888888


Q ss_pred             hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy11230         87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY  126 (553)
Q Consensus        87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~  126 (553)
                      ..  ++.+++++|+++|++++.++..|+|||++|+..+..
T Consensus        82 ~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           82 YE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred             Hc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence            88  888888888888888888888888888888443333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=7.4e-24  Score=190.94  Aligned_cols=134  Identities=18%  Similarity=0.201  Sum_probs=118.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCCccc------cccCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy11230        410 AKTPLHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVL  480 (553)
Q Consensus       410 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l  480 (553)
                      ..++|+.|+..|+.+.+++|++.|++++.      .+..|+||||+|+..   |+.+++++|+++|++++.++..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34679999999999999999999999887      578889999999987   889999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        481 HLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       481 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+|+..|+.+++++|+++|++++..+.    .|.|||++|+..|+.+++++|+++|++      .|.||||+|
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~----~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A  293 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNE----AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVD  293 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCT----TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence            999999999999999999999998877    899999999999999999999999887      578999987

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1.5e-23  Score=175.38  Aligned_cols=138  Identities=28%  Similarity=0.329  Sum_probs=112.6

Q ss_pred             CCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC-CCCCcHHHHHH
Q psy11230         44 DDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIAA  121 (553)
Q Consensus        44 ~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A~  121 (553)
                      ..|.||||+|+..|+ +++++|++ |++++..+..|+||||+|+..  ++.+++++|+++|++++.++ ..|+||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            356788888888888 88888888 888888888888888888887  88888888888888888777 77888888888


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230        122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       122 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      ..|+.+++++|+++|++++.++..|.|||++|++....         ..+.+++++|+..|+.+++++|.++
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT---------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT---------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC---------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            88888888888888888888888888888888764433         3457899999999999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.4e-24  Score=186.66  Aligned_cols=137  Identities=22%  Similarity=0.284  Sum_probs=115.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHH
Q psy11230        407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAVK  485 (553)
Q Consensus       407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~~~~~t~l~~A~~  485 (553)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++ |++++.++..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             hCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230        486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN  547 (553)
Q Consensus       486 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  547 (553)
                      .|+.+++++|+++|++++..+.    .|.|||++|+..|+.++++.|++.|+....+|.++.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNI----EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCT----TSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCHHHHHHHHHcCCCCccccC----CCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999999999887    899999999999999999999999999888887654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.2e-23  Score=163.27  Aligned_cols=116  Identities=24%  Similarity=0.277  Sum_probs=95.2

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy11230        408 KYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ  487 (553)
Q Consensus       408 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~  487 (553)
                      ..|.|||+.|+..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHH
Q psy11230        488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA  527 (553)
Q Consensus       488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~  527 (553)
                      +.+++++|+++|++++..+.    .|.|||++|...+..+
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGP----DGLTAFEATDNQAIKA  120 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT----TSCCHHHHCCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCC----CCCCHHHHhCCHHHHH
Confidence            88888888888888888776    7888888885443333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1.1e-24  Score=182.29  Aligned_cols=140  Identities=23%  Similarity=0.262  Sum_probs=123.6

Q ss_pred             CCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHh
Q psy11230        375 DNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEM  453 (553)
Q Consensus       375 ~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~  453 (553)
                      +..|.||||.|+..|+.+++..+..+.+++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            346778888888888888875444488888889999999999999999999999999999999888 8899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHH
Q psy11230        454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL  533 (553)
Q Consensus       454 ~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  533 (553)
                      |+.+++++|+++|++++.++..|.|||++|++.++.                 .    .+.++|++|+..|..+++++|.
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~----~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------T----PKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------C----CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------c----ccccHHHHHHHcCHHHHHHHHH
Confidence            999999999999999999999999999999974432                 1    5669999999999999999998


Q ss_pred             hc
Q psy11230        534 DY  535 (553)
Q Consensus       534 ~~  535 (553)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            76

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=189.21  Aligned_cols=126  Identities=23%  Similarity=0.261  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDP-----FPDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLGNTV   81 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~~t~   81 (553)
                      .+.++|+.|+..|+.+.|+.|++.|++++..     .+..|.||||+|+..   |+ +++++|++.|++++..|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            3557899999999999999999999999873     378899999999987   77 99999999999999999999999


Q ss_pred             HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230         82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH  138 (553)
Q Consensus        82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  138 (553)
                      ||+|+..  ++.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus       230 Lh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          230 LHYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHT--TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9999998  999999999999999999999999999999999999999999998775

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=5e-22  Score=176.92  Aligned_cols=190  Identities=19%  Similarity=0.158  Sum_probs=145.1

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHHcCCchHHHHHHcCCCCC--CCCCCCChHHHHH
Q psy11230        341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPNLIRHGANVN--ARNKYAKTPLHIA  417 (553)
Q Consensus       341 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~ll~~~~~~~--~~~~~~~~~l~~a  417 (553)
                      .|..+.+.++.+...|+..+.+++-..-......... +.....    .......+++.......  .......++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            5677888999999999887777664432221110011 111111    00111112222222111  1111234789999


Q ss_pred             HhcCCHHHHHHHHhCCCCcc------ccccCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230        418 VEQKNMSALNYLLEHGAQVD------ARTQLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN  488 (553)
Q Consensus       418 ~~~~~~~~~~~Ll~~g~~~~------~~~~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~  488 (553)
                      +..++.+.++.+++.|.+++      ..+..|+||||+|+..   |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999854      4478899999999999   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      .+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++
T Consensus       218 ~~~v~~Ll~~gad~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          218 AECLKLLLRGKASIEIANE----SGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCccC----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999988    899999999999999999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=6.5e-23  Score=179.72  Aligned_cols=141  Identities=23%  Similarity=0.257  Sum_probs=117.2

Q ss_pred             CCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHhCC
Q psy11230        377 QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMHN  455 (553)
Q Consensus       377 ~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~  455 (553)
                      .|.||||.|+..|+.+++.++..+.+++.++..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            4667777777777777664433377777788888899999999999999999999999998888 779999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       456 ~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      .+++++|+++|++++.++..|.||||+|+..++.                 .    .+.|||++|+..|+.+++++|+++
T Consensus       124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----------------~----~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          124 PEVVEALVELGADIEVEDERGLTALELAREILKT-----------------T----PKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-----------------C----CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-----------------c----CCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999999999999999863321                 1    577999999999999999999987


Q ss_pred             CCC
Q psy11230        536 NPD  538 (553)
Q Consensus       536 g~~  538 (553)
                      +.+
T Consensus       183 ~~~  185 (244)
T 3ui2_A          183 VFE  185 (244)
T ss_dssp             HEE
T ss_pred             ccc
Confidence            543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.6e-22  Score=185.84  Aligned_cols=143  Identities=21%  Similarity=0.212  Sum_probs=119.4

Q ss_pred             cCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC--CCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          8 TNKEGITLFQQAIVS-SQTPIAKLLAERGANINDPFP--DDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~-g~~~~v~~Ll~~g~~~~~~~~--~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      .+-.+.|+||.|+.. |+.++|++|++.|++++.. +  ..|.||||+|+..|+ ++|++|+++|++++..|..|+||||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            344567899999999 9999999999999999987 5  789999999999999 9999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHH
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH---TECKNHQGYNALHVA  153 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~~t~l~~~  153 (553)
                      +|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+..   ....+..+.|+++..
T Consensus       274 ~A~~~--g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          274 HATIL--GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             HHHHc--CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            99999  999999999999999999999999999999999999999999987643   333445556665554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3.3e-22  Score=183.80  Aligned_cols=139  Identities=27%  Similarity=0.300  Sum_probs=92.2

Q ss_pred             CChHHHHHHhc-CCHHHHHHHHhCCCCccccc--cCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230        410 AKTPLHIAVEQ-KNMSALNYLLEHGAQVDART--QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI  486 (553)
Q Consensus       410 ~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~  486 (553)
                      +.|+||.|+.. ++.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            44677777777 77777777777777777766  6677777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC---CCCCCCCCCCCCCCC
Q psy11230        487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP---DLDVKDKNGNTALHP  552 (553)
Q Consensus       487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~~t~l~~  552 (553)
                      ++.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|++.+.   +....+..+.|++++
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~----~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred             CcHHHHHHHHHCcCCCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            777777777777777777666    67777777777777777777776653   344455556666654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=7.7e-22  Score=144.29  Aligned_cols=92  Identities=39%  Similarity=0.550  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHh
Q psy11230        443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVE  522 (553)
Q Consensus       443 ~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~  522 (553)
                      |+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|.||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666665555    56666666666


Q ss_pred             hCCHHHHHHHHhcCCC
Q psy11230        523 SNNEAVINKLLDYNPD  538 (553)
Q Consensus       523 ~~~~~~v~~Ll~~g~~  538 (553)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            6666666666666653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=4e-22  Score=177.52  Aligned_cols=130  Identities=18%  Similarity=0.289  Sum_probs=120.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----CCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCC
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPF-----PDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLG   78 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~   78 (553)
                      .+....++|+.|+..|+.+.|+.+++.|++++...     +..|.||||+|+..   |+ +++++|+++|++++..|..|
T Consensus       126 ~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g  205 (278)
T 1dcq_A          126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG  205 (278)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred             ccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence            34445679999999999999999999999965432     67899999999998   78 99999999999999999999


Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT  139 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~  139 (553)
                      +||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       206 ~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          206 STALHYCCLT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHc--CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999998  9999999999999999999999999999999999999999999998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.4e-21  Score=142.93  Aligned_cols=93  Identities=37%  Similarity=0.565  Sum_probs=89.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230        409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN  488 (553)
Q Consensus       409 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~  488 (553)
                      +|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q psy11230        489 VAILECLLVNKAD  501 (553)
Q Consensus       489 ~~~~~~Ll~~g~~  501 (553)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=4.7e-22  Score=152.25  Aligned_cols=109  Identities=29%  Similarity=0.361  Sum_probs=85.6

Q ss_pred             ccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHH
Q psy11230        438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPL  517 (553)
Q Consensus       438 ~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l  517 (553)
                      .+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+.    .|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK----DGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT----TCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC----CCCCHH
Confidence            3566778888888888888888888888888887788888888888888888888888888888777766    678888


Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy11230        518 HLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL  550 (553)
Q Consensus       518 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  550 (553)
                      |+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            888888888888888888888888888887763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.6e-21  Score=149.27  Aligned_cols=105  Identities=33%  Similarity=0.471  Sum_probs=61.9

Q ss_pred             CCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230         43 PDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA  121 (553)
Q Consensus        43 ~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~  121 (553)
                      +.+|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+..  ++.+++++|+++|++++.++..|+||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT--TCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            4455555555555555 555555555555555555566666666655  5666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11230        122 RTGNYKMVRVLIDHGAHTECKNHQGYNA  149 (553)
Q Consensus       122 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~  149 (553)
                      ..|+.+++++|+++|++++.++..+.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            6666666666666666666665555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=3e-18  Score=129.31  Aligned_cols=88  Identities=31%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             CCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230         43 PDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA  121 (553)
Q Consensus        43 ~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~  121 (553)
                      +.+|.|+||+|+..|+ +++++|++.|++++..|..|+||||+|+..  ++.+++++|+++|++++.+|..|+||||+|+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            4555666666666666 666666666666666666666666666665  6666666666666666666666666666666


Q ss_pred             HcCCHHHHHHH
Q psy11230        122 RTGNYKMVRVL  132 (553)
Q Consensus       122 ~~g~~~iv~~L  132 (553)
                      ..|+.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            66666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=5.5e-18  Score=127.84  Aligned_cols=89  Identities=27%  Similarity=0.396  Sum_probs=54.2

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230        407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI  486 (553)
Q Consensus       407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~  486 (553)
                      +..|.|+||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|||++|+..
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHH
Q psy11230        487 QNVAILECL  495 (553)
Q Consensus       487 ~~~~~~~~L  495 (553)
                      ++.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	553
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-62
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-58
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-57
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-46
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-40
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-37
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-34
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-32
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-25
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-21
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-24
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-24
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-22
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-24
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-20
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-19
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-14
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-13
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-14
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-14
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-13
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  207 bits (528), Expect = 4e-62
 Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 20/408 (4%)

Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINV 166
           TPLH+A+  G+  +V+ L+  GA     N +    LH+A           LL+  A +N 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
           +    +T    A  + +   ++L L+   N        +            R GH   V 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH-----IAAREGHVETVL 116

Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQ 285
            +LEK A+     +   T L +A ++G +++ E LL+  A  ++  +   +PLH+A+   
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 176

Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
           ++ IV+LL        + ++       PLH+    K     + ++LL +G + N +  + 
Sbjct: 177 NLDIVKLL---LPRGGSPHSPAWNGYTPLHI--AAKQNQVEVARSLLQYGGSANAESVQG 231

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
            TPLH+A +    + V+LL+   A+ N+ +  G  PLH+  Q G+V + + LI+HG  V+
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           A  +   TPLH+A    N+  + +LL+H A V+A+T+LG  PL+ A +  +  IV  LLK
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK 512
             A+ N     G T L +A ++  +++ + L V   + +  ++S   +
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  198 bits (503), Expect = 2e-58
 Identities = 116/436 (26%), Positives = 194/436 (44%), Gaps = 43/436 (9%)

Query: 50  LHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNI 108
           LH+A+   ++ +V+ LL+     N  +    T LH  A  +       + L  N+A VN 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQNKAKVNA 61

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN 168
           K K+  TPLH AAR G+  MV++L+++                          A+ N+  
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLEN-------------------------NANPNLAT 96

Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
             G T   +A    +   +   L+   +          K G   L    + G     +L+
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACM-----TKKGFTPLHVAAKYGKVRVAELL 151

Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHI 287
           LE+ A+ +A  +   T L +AV H +L IV+ LL  G    S  +  ++PLH+A ++  +
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 211

Query: 288 AIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKT 347
            + + LL+   +    + +G T   PLHL  Q    +  M   LL   AN N+ +    T
Sbjct: 212 EVARSLLQYGGSANAESVQGVT---PLHLAAQE--GHAEMVALLLSKQANGNLGNKSGLT 266

Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNAR 406
           PLH+  +        +L+KHG  V+     G  PLH+A   G +  +  L++H A+VNA+
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF- 465
            K   +PLH A +Q +   +  LL++GA  +  +  G  PL IA  +  +S+ + L    
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 386

Query: 466 --KANVNSSDQFGRTV 479
              + V  SD+   + 
Sbjct: 387 DETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (491), Expect = 9e-57
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 37/370 (10%)

Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
           LH+    GH   VK +L++GA+ +  +   +T L +A   GH ++ ++LL + A V++  
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
           +   +PLH A    H  +V+LLL  N N     T G T           ++    +    
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE--- 120

Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV 391
               A+      +  TPLH+A +        LL++  A  N     G  PLH+AV +  +
Sbjct: 121 --KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 392 AIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
            I   L+  G + ++      TPLHIA +Q  +     LL++G   +A +  G  PL++A
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
            +  +  +V  LL  +AN N  ++ G T LHL  +  +V + + L+ +   ++A    G 
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

Query: 511 -----------------------------WKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
                                          GY+PLH A +  +  ++  LL      + 
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 358

Query: 542 KDKNGNTALH 551
              +G T L 
Sbjct: 359 VSSDGTTPLA 368

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (420), Expect = 1e-46
 Identities = 103/423 (24%), Positives = 167/423 (39%), Gaps = 58/423 (13%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
           A  N +N +  T    A  +  T +AK L +  A +N     D ++ LH AA   +  +V
Sbjct: 24  ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMV 82

Query: 62  RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
           +LLLE N + N              + +      V  L    A+     K+G TPLH+AA
Sbjct: 83  KLLLENNANPNLATT--AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 140

Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
           + G  ++  +L++  AH       G   LHVA        V +LL +G   +     G T
Sbjct: 141 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 200

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
              +A +          L+Y         +     G   L    + GH   V L+L K A
Sbjct: 201 PLHIAAKQNQVEVARSLLQY-----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 255

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLL 293
           N +  ++   T L +  + GH+ + + L+ HG                            
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV--------------------------- 288

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
                    ++        PLH  V     N  + K LL H A+VN K     +PLH A 
Sbjct: 289 --------MVDATTRMGYTPLH--VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 338

Query: 354 ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR----HGANVNARNKY 409
           +    D V+LL+K+GA  N + + G  PL IA + GY+++ ++++      + V   +K+
Sbjct: 339 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 398

Query: 410 AKT 412
             +
Sbjct: 399 RMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 2e-40
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
           PLH+       +  + K LL  GA+ NV + + +TPLH+A  +   +    L+++ A VN
Sbjct: 3   PLHVASFMG--HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
                 Q PLH A + G+  +   L+ + AN N       TPLHIA  + ++  +  LLE
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI 491
             A     T+ G  PL++A +   + + E LL+  A+ N++ + G T LH+AV   N+ I
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 180

Query: 492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           ++ LL      ++      W GYTPLH+A + N   V   LL Y    + +   G T LH
Sbjct: 181 VKLLLPRGGSPHSP----AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 7e-34
 Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 20/281 (7%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIR 59
            +A      K+G T    A    +  +A+LL ER A+ N     +G + LH+A    N+ 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLD 179

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V+LLL      ++    G T LH  A     +      L     + N ++ +G TPLH+
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA--RSLLQYGGSANAESVQGVTPLHL 237

Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFG 171
           AA+ G+ +MV +L+   A+    N  G   LH+           +L++ G  ++     G
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
            T   +A    N   ++  L++     Q   +   K G   L    + GH + V L+L+ 
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQH-----QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFL---LDHGACVD 269
           GA+ +       T L IA   G++ + + L    D  + V 
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 5e-22
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
           TPLH+A    ++  +  LL+ GA  +      + PL++A    +  + + LL+ KA VN+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW-------------------- 511
             +  +T LH A +I +  +++ LL N A+ N    +G                      
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 512 ---------KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                    KG+TPLH+A +     V   LL+ +   +   KNG T LH
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 170

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
           PL++A  M +L IV+ LL+  A+ N S+    T LH+A +  +  + + LL NKA +NAK
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552
                    TPLH A    +  ++  LL+ N + ++    G+T LH 
Sbjct: 63  A----KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 7e-37
 Identities = 73/310 (23%), Positives = 125/310 (40%), Gaps = 44/310 (14%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN-F 170
           E +  L  A +  +  +V+ L++ GA                         ++N +    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGA-------------------------NVNFQEEEG 38

Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
           G T    A +M     +EL L++G +      +                G    +KL L 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-----LAAIAGSVKLLKLFLS 93

Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-----------SPLH 279
           KGA+V+  D    TA   A  +G +K ++FL   GA V+  +              + L 
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 280 LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
            A EK H+ ++++LL     ++N       N     L+    S    +   LL HGA+VN
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 340 VKDDENKTPLHIAIESQCWDAVS-LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LI 397
           V+ +  KTPL +A+E +    V  LL +   ++N  D+ G+  L +AV+     I   L 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 398 RHGANVNARN 407
           + GA+ +  +
Sbjct: 274 KRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 2e-34
 Identities = 74/279 (26%), Positives = 118/279 (42%), Gaps = 14/279 (5%)

Query: 209 GGQLLLHLVRNGHQNAVKLILEKGANVHAKD-QLCKTALDIAVEHGHLKIVEFLLDH-GA 266
              LL+  V+N   + V+ +LE GANV+ ++ +   T L  AV+     IVE LL H   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN-----KAPLHLVVQRK 321
            V   +   +P  LA     + +++L L +  +    +  G T             ++  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQM 380
                          +         T L  A E    + + +L+   GADVN  DN G+ 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 381 PLHIAVQNGY-----VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH-GA 434
            L  A+ +            L+ HGA+VN R +  KTPL +AVE+K++  +  LLE    
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
           +++     GK  L +AVE+    I E L K  A+ +  D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 2e-32
 Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 24/281 (8%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNI 301
             L  AV++  + +V+ LL+ GA V+  +     +PLH A++     IV+LLLR   + +
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                G T       ++   + +  + K  L  GA+VN  D    T    A       A+
Sbjct: 67  LRKKNGAT-----PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 362 SLLVKHGADVNVID----------NQGQMPLHIAVQNGYVAIPNLI--RHGANVNARNKY 409
             L K GA+VN+              G   L  A + G+V +  ++    GA+VNA +  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 410 AKTPLHIAVEQKNMSAL----NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-K 464
            +  L  A+   + S +    + LL+HGA V+ R + GK PL +AVE  +L +V++LL +
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
               +N +D  G+T L LAV+++   I E L    A  +  
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 67/279 (24%), Positives = 103/279 (36%), Gaps = 22/279 (7%)

Query: 11  EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVD 70
           E   L  +A+ +    + + L E GAN+N    + G + LH A   +   +  LL  +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
              +          +A+I          L    A+VN  +  G T    AA  G  K ++
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 131 VLIDHGAHTECKNHQ----------GYNALHVAVG---------ILLRKGADINVENNFG 171
            L   GA+   +             G  AL  A           +L   GAD+N  +N G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
           + A   A    +   +E      ++    V     + G   L+  V   H   V+ +LE+
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 232 -GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
               ++  D   KTAL +AVE    KI E L   GA  D
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 24/260 (9%)

Query: 310 NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN-KTPLHIAIESQCWDAVSLLVKHG 368
           +   L   VQ +  +  + + LL  GANVN +++E   TPLH A++    D V LL++HG
Sbjct: 5   DNHLLIKAVQNE--DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 369 ADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALN 427
           AD  +    G  P  +A   G V  +   +  GA+VN  + Y  T    A     + AL 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 428 YLLEHGA----------QVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFG 476
           +L + GA            +   + G   L  A E  ++ +++ LL +  A+VN+ D  G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 477 RTVLHLAV----KIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
           R  L  A+         AI   LL + AD+N +      +G TPL LAVE  +  ++ +L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRG----ERGKTPLILAVEKKHLGLVQRL 238

Query: 533 LDYNP-DLDVKDKNGNTALH 551
           L+    +++  D +G TAL 
Sbjct: 239 LEQEHIEINDTDSDGKTALL 258

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 3e-23
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 13/221 (5%)

Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPNL-IRHGA 401
           E+   L  A++++  D V  L++ GA+VN  + + G  PLH AVQ     I  L +RHGA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
           +   R K   TP  +A    ++  L   L  GA V+     G      A     +  ++ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 462 LLKFKANVNSSDQF----------GRTVLHLAVKIQNVAILECLLVNK-ADINAKIISGI 510
           L K  ANVN   +           G T L  A +  +V +L+ LL    AD+NA    G 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 511 WKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                 L  + +S+ EA+ + LLD+  D++V+ + G T L 
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 6e-18
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 5   VNATNKEGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATKNIRLV-- 61
                K G T    A       + K LL E GA++N        + +H   + +   V  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 62  --RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
              LLL++  DVN     G T L  +A  K        +L+     +N  + +G T L +
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

Query: 120 AARTGNYKMVRVLIDHGAHTECKN 143
           A      K+  +L   GA T+C +
Sbjct: 260 AVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATK-NIRL 60
           ADVN   + G T    A+      + + LL +    IND    DGK+ L +A      ++
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKI 268

Query: 61  VRLLLEYNVDVNAVD 75
             LL +     +  D
Sbjct: 269 AELLCKRGASTDCGD 283

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 7e-27
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
           +++L   +     D +++T LH A  +   + V  L++ G  VN  D+ G  PLHIA   
Sbjct: 21  ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 80

Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
           G   I   L+  GA VNA N+   TPLH A  +        LLE GA  DA+       +
Sbjct: 81  GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 140

Query: 448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
           + A    NL ++  LL +KA+ N  D  G T LHLA   + V   + L+   A I  +  
Sbjct: 141 HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 200

Query: 508 SGIWKGYTPLHLAVESNNEAVINKLLD 534
               +  TPL +A       ++ ++++
Sbjct: 201 ----EEKTPLQVAKGGLGL-ILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-26
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 40/255 (15%)

Query: 212 LLLHLVRNGHQNAVK-LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
           ++ +L  +G    +K  IL   +     DQ  +TAL  A   GH +IVEFLL  G  V+ 
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 271 LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
                                                        L +   +    + K 
Sbjct: 66  KDDAGWS-------------------------------------PLHIAASAGRDEIVKA 88

Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
           LL  GA VN  +    TPLH A      +   +L++ GA+ +  D+     +H A   G 
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 391 V-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI 449
           +  I  L+ + A+ N ++    TPLH+A +++ +     L+  GA +    +  K PL +
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 450 AVEMHNLSIVEQLLK 464
           A +     I++++++
Sbjct: 209 A-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 1e-23
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 5/192 (2%)

Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR-NKYAKTPLHIAVE 419
              ++   +     D   +  LH A   G+  I   +          +    +PLHIA  
Sbjct: 20  KESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 79

Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTV 479
                 +  LL  GAQV+A  Q G  PL+ A   +   I   LL+  AN ++ D +  T 
Sbjct: 80  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 139

Query: 480 LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL 539
           +H A    N+ ++  LL  KA  N +      +G TPLHLA +         L+     +
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQD----TEGNTPLHLACDEERVEEAKLLVSQGASI 195

Query: 540 DVKDKNGNTALH 551
            +++K   T L 
Sbjct: 196 YIENKEEKTPLQ 207

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 1e-21
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 17/223 (7%)

Query: 50  LHIAATKNIRLVR-LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNI 108
            ++A +  +  ++  +L         D    T LH   S    +    E L      VN 
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV--EFLLQLGVPVND 65

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV--------AVGILLRK 160
           K+  G +PLHIAA  G  ++V+ L+  GA     N  G   LH            +LL  
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
           GA+ + ++++  TA       K    +   L Y     +   +     G   L       
Sbjct: 126 GANPDAKDHYEATAM-HRAAAKGNLKMIHILLY----YKASTNIQDTEGNTPLHLACDEE 180

Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
                KL++ +GA+++ +++  KT L +A + G   I++ +++
Sbjct: 181 RVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-20
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 12/212 (5%)

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
            +L   +     +   +TA   A    +       +   +       ++    G   L  
Sbjct: 22  SILADKSLATRTDQDSRTALHWACSAGHT-----EIVEFLLQLGVPVNDKDDAGWSPLHI 76

Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFI 274
               G    VK +L KGA V+A +Q   T L  A      +I   LL+ GA  D+   + 
Sbjct: 77  AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 136

Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
            + +H A  K ++ ++ +LL    +    +T+G T      L +          K L+  
Sbjct: 137 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT-----PLHLACDEERVEEAKLLVSQ 191

Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
           GA++ +++ E KTPL +A +      +  +V+
Sbjct: 192 GASIYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 2e-17
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
           +    T+++  T    A  +  T I + L + G  +ND            A+     +V+
Sbjct: 28  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK 87

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
            LL     VNAV+  G T LH  AS    +     +L    AN + K+    T +H AA 
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHE--IAVMLLEGGANPDAKDHYEATAMHRAAA 145

Query: 123 TGNYKMVRVLIDHGAHTECKNHQGYNALHV--------AVGILLRKGADINVENNFGKTA 174
            GN KM+ +L+ + A T  ++ +G   LH+           +L+ +GA I +EN   KT 
Sbjct: 146 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTP 205

Query: 175 FQMA 178
            Q+A
Sbjct: 206 LQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 24  QTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVL 82
           +  I K L  +GA +N     +G + LH AA+KN   +  +LLE   + +A D+   T +
Sbjct: 82  RDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 140

Query: 83  HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK 142
           H        +   + IL   +A+ NI++ EG+TPLH+A      +  ++L+  GA    +
Sbjct: 141 HRA--AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 198

Query: 143 NHQGYNALHVAVG 155
           N +    L VA G
Sbjct: 199 NKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 6e-13
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IR 59
             A VNA N+ G T    A   ++  IA +L E GAN +        + +H AA K  ++
Sbjct: 92  KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLK 150

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           ++ +LL Y    N  D  GNT LH             ++L +  A++ I+NKE  TPL +
Sbjct: 151 MIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 120 AARTGNYKMVRVLID 134
           A   G   +++ +++
Sbjct: 209 AKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 414 LHIAVEQKNMSAL-NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSS 472
           +        +  L   +L   +      Q  +  L+ A    +  IVE LL+    VN  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 473 DQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
           D  G + LH+A       I++ LL   A +NA        G TPLH A   N   +   L
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ----NGCTPLHYAASKNRHEIAVML 122

Query: 533 LDYNPDLDVKDKNGNTALH 551
           L+   + D KD    TA+H
Sbjct: 123 LEGGANPDAKDHYEATAMH 141

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH-GA 266
             G + L    +G    V  +LE+GA+++  +    TAL  A    ++ +V+FL+++   
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKG------------------P 308
                     PLH A    ++ I + L+ +  +   +N++G                   
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 309 TNKAPLHLVVQRKS----WNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL 364
            N+  + +   RK           + L     N         T LH+A      + + LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 365 VKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNM 423
           ++   DVN+ D  G  PLH A   G       L+ +  ++ A NK  +T   +A E    
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE---- 274

Query: 424 SALNYLLEHGAQVD 437
             L YL E   + +
Sbjct: 275 DILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 92.9 bits (229), Expect = 2e-21
 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 14/255 (5%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
                A   G  + V  LL+ GA ++       + LH A    ++ +V+ L+    N   
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
            + +G        L          + + L+  GA+V   + E  TPL IA E    + + 
Sbjct: 102 PDNEGWI-----PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 363 LLV-KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQK 421
             V + G D+     + +  +         A   L     N     K   T LH+A  + 
Sbjct: 157 NEVNRQGVDIEAARKEEERIML------RDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210

Query: 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
               L  L++    V+ +   G  PL+ A           L++   ++ + ++ G+T   
Sbjct: 211 YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270

Query: 482 LAVKIQNVAILECLL 496
           +A +   +  LE L 
Sbjct: 271 VADE-DILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 32/238 (13%)

Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR-HG 400
             ++      A  S   + V  L++ GAD+N  +  G   LH A  +  V +   +  +G
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI----------- 449
           AN+N  +     PLH A     +    YL+  GA V A    G  PL I           
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 450 ----------------AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
                              +      + L     N     + G T LH+A       +L+
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            L+  + D+N K     + G+TPLH A     E     L++   D++  +K G TA  
Sbjct: 217 LLIQARYDVNIKD----YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.5 bits (202), Expect = 6e-18
 Identities = 54/247 (21%), Positives = 84/247 (34%), Gaps = 14/247 (5%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           +    A        V  LL       +IN         LH      + +   F  L+ +G
Sbjct: 42  AVFLAACSSGDTEEVLRLL---ERGADINYANVDGLTALHQACIDDNVDMVKF--LVENG 96

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
           AN+N  D+E   PLH A      D    L+  GA V  ++++G  PL IA +        
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-----AM 151

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
                  VN +    +             A  +L           + G   L++A     
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
             +++ L++ + +VN  D  G T LH A           L+ N  D+ A        G T
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK----VGQT 267

Query: 516 PLHLAVE 522
              +A E
Sbjct: 268 AFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 78.6 bits (192), Expect = 9e-17
 Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 7/255 (2%)

Query: 45  DGKSCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           D  +    A +  +   V  LLE   D+N  +  G T LH        +   V+ L  N 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC--IDDNVDMVKFLVENG 96

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163
           AN+N  + EG  PLH AA  G   +   LI  GAH    N +G   L +A         +
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE---EEAMEE 153

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQN 223
           +       +     A   +    +    +  +N        + K GG  L      G+  
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAI 282
            +KL+++   +V+ KD    T L  A   G  +    L+++   ++++ +   +   +A 
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

Query: 283 EKQHIAIVQLLLRRN 297
           E     + +L  ++N
Sbjct: 274 EDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 11/253 (4%)

Query: 11  EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVD 70
           +   +F  A  S  T     L ERGA+IN     DG + LH A   +   +   L  N  
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
                +    +    A+         E L +  A+V   N EGDTPL IA      ++++
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDI-AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 131 VLIDHGA--HTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIE 188
             ++         +  +    L  A   L     +       G TA  +A        ++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
           L ++   +V           G   L      G + A ++++E   ++ A +++ +TA D+
Sbjct: 217 LLIQARYDVNIK-----DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

Query: 249 AVE--HGHLKIVE 259
           A E   G+L+ ++
Sbjct: 272 ADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 64  LLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART 123
           L   +++       G T LH            +++L   R +VNIK+ +G TPLH AA  
Sbjct: 185 LNSGHINDVRHAKSGGTALHVA--AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVA----VGILLRKGADINVEN 168
           G  +  R+L+++    E  N  G  A  VA    +G L       N+ +
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 33/211 (15%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
           AD+N  N +G+T   QA +     + K L E GANIN P  +        A+   + +  
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVAS-------------------------IKTRDPTAVE 97
            L+     V AV++ G+T L                               +     A +
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183

Query: 98  ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA---- 153
            L +   N     K G T LH+AA  G  +++++LI        K++ G+  LH A    
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 154 ----VGILLRKGADINVENNFGKTAFQMAYE 180
                 IL+    D+   N  G+TAF +A E
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRL 60
              DVN  + +G T    A    +    ++L E   ++       G++   +A    +  
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADEDILGY 279

Query: 61  VRLLLE 66
           +  L +
Sbjct: 280 LEELQK 285

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.4 bits (246), Expect = 4e-24
 Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 22/268 (8%)

Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTEC---KNHQGYNALHVAVGILLRKGADIN 165
             ++GDT LH+A    +   +  L+   A  E    +N  G  ALH+A            
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA----------- 53

Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
                   A  +         + +  + G       C         +LL    +  ++A 
Sbjct: 54  ----ILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ 285
              L +  +          A+D +  +   +      D    +++  +            
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVD-SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
             A +  LLR    ++N             L +  ++   ++ + LL  GA+   +    
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAVEAQAASVLELLLKAGADPTARMYGG 225

Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNV 373
           +TPL  A+         LL  HGA    
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.4 bits (246), Expect = 4e-24
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 32/249 (12%)

Query: 44  DDGKSCLHIAATK-NIRLVRLLLEYNVD---VNAVDNLGNTVLHTVASIKTRDPTAVEIL 99
           +DG + LH+A    +   +  LL ++     ++  ++LG T LH  A     + + VE L
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGEASTVEKL 64

Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA---------------------- 137
               A V +  + G T LH+A R   +    VL+                          
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 138 HTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
           H         N  +            +  EN  G T   +A   K+   + L    G ++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 198 EQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKI 257
            +                 V     + ++L+L+ GA+  A+    +T L  A+   +  +
Sbjct: 185 NKPEPTCGRTPLH----LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 258 VEFLLDHGA 266
              L  HGA
Sbjct: 241 ARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.6 bits (231), Expect = 4e-22
 Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 16/244 (6%)

Query: 210 GQLLLHL-VRNGHQNAVKLILEKGAN---VHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
           G   LHL V + H+  +  +L   A    +  ++ L +TAL +A   G    VE L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 266 ACV-DSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKG---------PTNKAPLH 315
           A V  + +  H+ LHLA   +      +LL+   ++    +           P       
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
            V  + +               +  ++ +  TPLH+A+  +  + V LL   GAD+N  +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 376 NQGQM-PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
                 PLH+AV+    ++   L++ GA+  AR    +TPL  A+ + N      L  HG
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 434 AQVD 437
           A   
Sbjct: 249 APEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (215), Expect = 6e-20
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 18/244 (7%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           + LHLA+  QH   +  LL  +  +  ++ +    +  LHL       +T          
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA- 69

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP-------------- 381
             V V +    T LH+A   +      +L++         +   +               
Sbjct: 70  -GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 382 -LHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA-R 439
            +           P        + A N    TPLH+AV  K+   +  L + GA ++   
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
              G+ PL++AVE    S++E LLK  A+  +    GRT L  A+   N  +   L  + 
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 500 ADIN 503
           A   
Sbjct: 249 APEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 8e-19
 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 21/231 (9%)

Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI---DNQGQMPLHIAVQNGYVAIPN 395
               ++  T LH+A+  Q    +  L+   A    +   ++ GQ  LH+A   G  +   
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 396 LIR-HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP-------- 446
            +   GA V    +   T LH+A   +  +    LL+                       
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 447 ------LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
                    +          +   ++  + + +  G T LH+AV  ++  ++  L   + 
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL---RD 179

Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
                       G TPLHLAVE+   +V+  LL    D   +   G T L 
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 99.0 bits (245), Expect = 9e-24
 Identities = 47/316 (14%), Positives = 91/316 (28%), Gaps = 48/316 (15%)

Query: 82  LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTEC 141
           LHT A+         E +     N+    +   T LH  A   + +    LI H A    
Sbjct: 6   LHTEAA---GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKE-- 59

Query: 142 KNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCV 201
                           +  GAD+N  +    T   +A   +    +   +K G +     
Sbjct: 60  ---------------CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 104

Query: 202 CHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
             E              N     +  +L                     +   L      
Sbjct: 105 KSERSALH-----QAAANRDFGMMVYMLNSTKLKG--------------DIEELDRNGMT 145

Query: 262 LDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK 321
                  +  +   +   L +EK          R+++      T         ++ + + 
Sbjct: 146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 205

Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
                        G+N + +D++ KTP+ +A +    + V  L++ GA V  +D      
Sbjct: 206 LVG--------EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 257

Query: 382 LHIAVQNGYVAIPNLI 397
             +A  N +  I ++ 
Sbjct: 258 RQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.6 bits (223), Expect = 7e-21
 Identities = 36/273 (13%), Positives = 88/273 (32%), Gaps = 21/273 (7%)

Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH------- 264
           + LH    G     + I  +  N+    +  +T L     +   +  E L+ H       
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 265 -GACVDS----------LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP 313
            GA V++          L  +     L            +  ++  +         +   
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 122

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
           +  ++        + +        + +           + +        +     A  + 
Sbjct: 123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 182

Query: 374 IDNQGQMPLHIAVQNGYV--AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
              +G+  LH A Q   +      +   G+N + +++  KTP+ +A ++  +  + YL++
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
            GA V+A          +A   ++ +IV+   +
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 88.3 bits (217), Expect = 4e-20
 Identities = 47/268 (17%), Positives = 88/268 (32%), Gaps = 39/268 (14%)

Query: 26  PIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLEYNV--------DVNAVDN 76
            I + +     NI DP     ++ LH  A+  +      L+ +          DVNA+D 
Sbjct: 15  AITEPITRESVNIIDP--RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 72

Query: 77  LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
             NT L      + R   A  +       +  K++             ++ M+  +++  
Sbjct: 73  DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--ANRDFGMMVYMLNST 130

Query: 137 AHTECKNHQGYN----------------------ALHVAVGILLRKGADINVENNFGKTA 174
                      N                       +     +     A  + E   G+TA
Sbjct: 131 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 190

Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
              A ++ N P     +KY V  +     +  + G   ++   + G    V  ++++GA+
Sbjct: 191 LHYAAQVSNMP----IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 246

Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLL 262
           V A D    TA  +A  + H  IV+   
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 84.8 bits (208), Expect = 6e-19
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 51/308 (16%)

Query: 243 KTALDIAVEH-GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
           ++ + +  E  G   I E +      +   +   + LH           + L+       
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
                                      K  +  GA+VN  D +  TPL +A+ ++    V
Sbjct: 58  ---------------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLV 90

Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI----RHGANVNARNKYAKTPLHIA 417
           + L+K GAD  + +   +  LH A  N    +   +    +   ++   ++   T L I 
Sbjct: 91  AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 150

Query: 418 VEQKNMS-----------ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL-LKF 465
              +                    +  A+ D+    G+  L+ A ++ N+ IV+ L  + 
Sbjct: 151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 210

Query: 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN 525
            +N +  D+ G+T + LA +   + ++  L+   A + A         +T   LA  +N+
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA----TDHTARQLAQANNH 266

Query: 526 EAVINKLL 533
             +++   
Sbjct: 267 HNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 83.2 bits (204), Expect = 2e-18
 Identities = 41/262 (15%), Positives = 82/262 (31%), Gaps = 28/262 (10%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH----- 367
           P+ L  +    +  + + +     N+ +    N+T LH    +   +    L+ H     
Sbjct: 3   PIKLHTEAAG-SYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 368 ---GADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAV-EQKNM 423
              GADVN +D     PL +AV      +   +            ++          ++ 
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 424 SALNYLLEHGAQVDART--------------QLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
             + Y+L                                 + ++      +      A  
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
           +S    GRT LH A ++ N+ I++       +  +        G TP+ LA +     V+
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKY---LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
             L+     ++  D   +TA  
Sbjct: 238 MYLIQQGASVEAVDATDHTARQ 259

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 4   DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVR 62
             ++   +G T    A   S  PI K L     +  D   +DGK+ + +AA +  I +V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 63  LLLEYNVDVNAVDNLGNTVLH 83
            L++    V AVD   +T   
Sbjct: 239 YLIQQGASVEAVDATDHTARQ 259

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 31/108 (28%)

Query: 446 PLYIAVE-MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA 504
           P+ +  E   + +I E + +   N+    +  RTVLH      +    E L+V++A    
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAK--- 58

Query: 505 KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552
                                     + +    D++  D + NT L  
Sbjct: 59  --------------------------ECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 1   FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IR 59
             ++ +  +++G T    A    +  +   L ++GA++         +   +A   N   
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHN 268

Query: 60  LVRLLLEY 67
           +V +    
Sbjct: 269 IVDIFDRC 276

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.4 bits (246), Expect = 9e-24
 Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 21/296 (7%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW--NTTMFKTLLYH 334
           P+           +   L+      +        K  L   +QR  +     M  +L   
Sbjct: 2   PIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND 61

Query: 335 GANVNVKD-DENKTPLHIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVA 392
            +N N +    N+   H++ +S   +          ++N+ +D  G  PLH       + 
Sbjct: 62  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 121

Query: 393 IPN-LIRHGANVNARNKYAKTPLHIAVEQKNMS-------ALNYLLEHGAQVDARTQLGK 444
           +   L++HG+N    +   ++ L  AV+  N          L+YL       D+  +   
Sbjct: 122 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 181

Query: 445 DPL---------YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
             +           A + +   ++  ++K +     S    +         +    +   
Sbjct: 182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 241

Query: 496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           L  K  I   + +    G T L++A    N ++++ LLDY  D  + +K+G   + 
Sbjct: 242 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.2 bits (230), Expect = 1e-21
 Identities = 49/253 (19%), Positives = 93/253 (36%), Gaps = 27/253 (10%)

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK-DDENKTPL 349
           ++    NN++ N N++G ++      V         +         N+N+  D+   TPL
Sbjct: 53  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL-LQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY-----VAIPNLIRHGANVN 404
           H        + V  LVKHG++    DN G+  L  AV++            L      + 
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 405 ARNKYAKTPLHIAVEQKNMSA------------LNYLLEHGAQ-VDARTQLGKDPLYIAV 451
             +   +T LH  +    M+             + ++++   + + + T   +       
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 452 EMHNLSIVEQLLK---FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
                SI+E L         +N+ D  G T L++A ++ N++I++ LL   AD       
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK- 290

Query: 509 GIWKGYTPLHLAV 521
               G  P+    
Sbjct: 291 ---SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.7 bits (226), Expect = 4e-21
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 25/262 (9%)

Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL-----LDHGA 266
            L  L+    Q     +    +N +++                L+ V        L+   
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 101

Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTT 326
            VD     ++PLH      ++ +V+ L++ + +N         +     +       + T
Sbjct: 102 PVDEHG--NTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS-------------LLVKHGADVNV 373
               L Y    + ++D  N+T LH  I +      S             ++ K    +  
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 374 IDNQGQMPLHIAVQNGYVAIPNLIRH----GANVNARNKYAKTPLHIAVEQKNMSALNYL 429
             N+ +   +        +I   +         +NA++    T L+IA    N+S ++ L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 430 LEHGAQVDARTQLGKDPLYIAV 451
           L++GA      + G  P+    
Sbjct: 279 LDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.6 bits (213), Expect = 2e-19
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 17/246 (6%)

Query: 8   TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLE 66
                      +  S    +         N+N P  + G + LH   +  N+ LV+ L++
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 67  YNVDVNAVDNLGNTVLH--TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
           +  +    DN+G + L     +       T   +L      + +++    T LH    T 
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNF 184
                     +              L + +G +++K           K +       +  
Sbjct: 189 GMTGCSAAAKYY-------------LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 235

Query: 185 PAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT 244
            +I   L     +   +  ++  +G   L    R G+ + V  +L+ GA+    ++    
Sbjct: 236 DSILENLDLKWIIANMLNAQD-SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLR 294

Query: 245 ALDIAV 250
            +D   
Sbjct: 295 PVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.6 bits (213), Expect = 3e-19
 Identities = 42/263 (15%), Positives = 84/263 (31%), Gaps = 27/263 (10%)

Query: 144 HQGYNALHVAVGILLRKGADINVENNF-GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVC 202
              +  +      L    ++ N E     +    ++++       + F    +N+   V 
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 203 HENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL------ 255
                  G   LH      +   VK +++ G+N    D + ++ L  AV+  +       
Sbjct: 105 EH-----GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 256 -KIVEFLLDHGACVDSLQFIHSPLHLAIE-----------KQHIAIVQLLLRRNNNNINI 303
             ++++L       DS     + LH  I            K ++ I+   + +  N    
Sbjct: 160 EALLDYLYPCLILEDS--MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
           +        P     +RK                +N +D    T L+IA        V  
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 364 LVKHGADVNVIDNQGQMPLHIAV 386
           L+ +GAD  + +  G  P+    
Sbjct: 278 LLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (210), Expect = 5e-19
 Identities = 48/292 (16%), Positives = 98/292 (33%), Gaps = 26/292 (8%)

Query: 16  FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVD 75
                +SS   I K L     N N+           +   +   +   L   + + N+  
Sbjct: 10  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 69

Query: 76  NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKEGDTPLHIAARTGNYKMVRVLID 134
              N       S  +      +     + N+NI  ++ G+TPLH      N ++V+ L+ 
Sbjct: 70  GSSNQQQQ-HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 135 HGAHTECKNHQGYNALHVAV------------GILLRKGADINVENNFGKTAFQMAYEMK 182
           HG++    ++ G + L  AV             +L      + +E++  +T         
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 183 NFPA--------IELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK--- 231
                       +++ + + V  +                        + ++ +  K   
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAI 282
              ++A+D    T L+IA   G++ IV+ LLD+GA      +    P+    
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 57  NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN-RANVNIKNKEGDT 115
           +I +  ++ + N  + +  N   +  +     +         LK      +N ++  GDT
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
            L+IAAR GN  +V  L+D+GA     N  G   +    G
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 301

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 95.7 bits (237), Expect = 4e-22
 Identities = 44/313 (14%), Positives = 91/313 (29%), Gaps = 41/313 (13%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
             L L        + Q  +  N  ++   +     K  +H+ +        + + L  + 
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLS----YKEAIHIFLPGTKNMEQVRQLLCLYY 69

Query: 336 ANVNV-----------KDDENKTPLHIAIESQCWDA---VSLLVKHGADVNVIDNQGQMP 381
           A+ N            K  +++    +A  + C  A   + LL+     V VI  +    
Sbjct: 70  AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 129

Query: 382 LHIAVQNGYVAIPN-LIRHGANVNARNKYA--KTPLHIAVEQKNMSALNYLLEHGAQVD- 437
             +A +NG++ + N L             A       +A E  ++  LN L E       
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 438 --ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV---------KI 486
              + +      + AV   + +++  LL     +  ++          V         ++
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

Query: 487 QNVAILECLLVNKADINAKIISGIWKGY---TPLHLAVESNNEAVINKLL-----DYNPD 538
           + +     L       +    S   +G+     L    +      I  LL          
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 539 LDVKDKNGNTALH 551
                 + N  L 
Sbjct: 310 TATIPGDANELLR 322

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.0 bits (222), Expect = 3e-20
 Identities = 35/330 (10%), Positives = 75/330 (22%), Gaps = 58/330 (17%)

Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH---LKIVEFLLDHGACVD 269
           +  L+   + +  +   +  ++ H K    +    +A   G    L  +  LL     V 
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMF 328
            +Q   +    LA E  H+ ++  L         +      N     L  +    +  + 
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAEN--GHLHVL 177

Query: 329 KTLLYHGANVN---VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
             L           ++ +        A+     + ++ L+     +              
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHE 230

Query: 386 VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
            + G   +       A    R K       ++      +              +      
Sbjct: 231 FEYGEKYV---NPFIARHVNRLKEMHDAFKLS------NPDGVFDLVTKSECLQGFYMLR 281

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
            L    +   L  +  LL                                        A 
Sbjct: 282 NLIRRNDEVLLDDIRFLLSIPGIKA--------------------------------LAP 309

Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDY 535
             +        L LA+   N+     LL  
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 89.6 bits (221), Expect = 4e-20
 Identities = 40/313 (12%), Positives = 79/313 (25%), Gaps = 31/313 (9%)

Query: 13  ITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVN 72
             LFQ  I +++  +  L  +   +I  P   + +    +         R   +   D +
Sbjct: 25  ENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAH 84

Query: 73  AVDNLGNTVLHTVASIKTRDPT-AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRV 131
                   +    A          + +L T+   V +   E      +AA  G+  ++  
Sbjct: 85  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 132 LIDHGAHTECKN--HQGYNALHVA--------VGILLRKGADIN---VENNFGKTAFQMA 178
           L +            + Y+A  +A        +  L           ++          A
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 179 YEMKNFPAIELFLKYGVNVEQCVCH--ENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH 236
               +   I   L   V +     H  E  +      +    N  +           +  
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 237 ---------AKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI------HSPLHLA 281
                     +       L    +   L  + FLL                  +  L LA
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 282 IEKQHIAIVQLLL 294
           +   +     LLL
Sbjct: 325 LRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.8 bits (206), Expect = 3e-18
 Identities = 33/272 (12%), Positives = 73/272 (26%), Gaps = 24/272 (8%)

Query: 300 NININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
           N+ I+        P   ++    W       +  +  ++     +    + +        
Sbjct: 1   NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ 60

Query: 360 AVSLLVKHGADVNV-----------IDNQGQMPLHIAVQNGYVAI----PNLIRHGANVN 404
              LL  + A  N               + ++   +A   G  +       L+     V 
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR--TQLGKDPLYIAVEMHNLSIVEQL 462
                      +A E  ++  LN L E                   +A E  +L ++ +L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 463 LKFKANVNS---SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
            +      +     +        AV   +  ++  LL     +    I     G      
Sbjct: 181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG----EK 236

Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            V       +N+L + +    + + +G   L 
Sbjct: 237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.3 bits (184), Expect = 2e-15
 Identities = 29/277 (10%), Positives = 70/277 (25%), Gaps = 31/277 (11%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAK---LLAERGANINDPFPDDGKSCLHIAATK-NI 58
           +D +    +   +   A ++  +       LL      +      +      +AA   ++
Sbjct: 81  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHL 139

Query: 59  RLVRLLLEYNVDVNAVD--NLGNTVLHTVASIKTRDPTAVEILKTNRANVN---IKNKEG 113
            ++  L E                     A         +  L           I+ +  
Sbjct: 140 HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV--LNRLCELAPTEATAMIQAENY 197

Query: 114 DTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKT 173
                 A   G++ ++  L+D            +      V   + +  +   E      
Sbjct: 198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE---MHD 254

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
           AF+++     F            V +  C +   +  + L+        + ++ +L    
Sbjct: 255 AFKLSNPDGVFDL----------VTKSECLQG-FYMLRNLIRRNDEVLLDDIRFLLSIPG 303

Query: 234 -----NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
                            L +A+  G+      LL   
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.6 bits (215), Expect = 4e-20
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 9/227 (3%)

Query: 214 LHL-VRNGHQNAVKLILE-KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
           LH          V+ +L  K + +  KDQ  +  L  +V     +I  FLL     V+  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL-HLVVQRKSWNTTMFKT 330
            +                   +++   +              +  L +        + + 
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNG 389
           L+ +GA+V +KD  N+ PLH A        + LL   G   VN  D QG  PL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 390 YVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
           +       + ++GA  +  +        +A+ ++      + L +  
Sbjct: 184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK---KFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 1e-16
 Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 63/290 (21%)

Query: 114 DTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKT 173
           + PLH A     +  V+ L+                            + +  ++  G+ 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSK------------------------PSLLLQKDQDGRI 36

Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
               +   +        L    NV      ++       +   V N              
Sbjct: 37  PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 96

Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLL 293
           +++       T L +AV     ++ +FL+++GA                           
Sbjct: 97  DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-------------------------- 130

Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
                    +  K   N+ PLH           +        + VN +D +  TPL  A+
Sbjct: 131 ---------VRIKDKFNQIPLH-RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 354 ESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGAN 402
                DA  LLV K+GA+ +++DN+G     +A+          + +  +
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF--FLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 4e-15
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 68/294 (23%)

Query: 79  NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
           N  LH  A ++       E+L +  + +  K+++G  PLH +     +++   L+    +
Sbjct: 1   NYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 139 TECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVE 198
               ++   +                          +   +   +   +E+         
Sbjct: 60  VNLDDYPDDS-------------------------GWTPFHIACSVGNLEVVKSLYDRPL 94

Query: 199 QCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIV 258
           +   ++    G   L   V        + ++E GA+V  KD+  +  L  A   G LK++
Sbjct: 95  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 154

Query: 259 EFLLDHGACVDSLQ--FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHL 316
           E L   G    + Q     +PL  A+ + H     LL+ +                    
Sbjct: 155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK-------------------- 194

Query: 317 VVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
                            +GA  ++ D++      +A+  Q        + +  D
Sbjct: 195 -----------------YGAEYDLVDNKGAKAEDVALNEQV---KKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 8e-15
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 11/213 (5%)

Query: 347 TPLHIAIESQCWDAV-SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR------H 399
            PLH A     +  V  LL    + +   D  G++PLH +V      I + +       +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
             +    + +    +  +V    +    Y       ++  T  G   L++AV      + 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
           + L++  A+V   D+F +  LH A  + ++ ++E L        + +     +G+TPL  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG---KSAVNWQDKQGWTPLFH 178

Query: 520 AVESNNEAVINKLLD-YNPDLDVKDKNGNTALH 551
           A+   +      L++ Y  + D+ D  G  A  
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 211

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 6e-14
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 11/231 (4%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
           PLH A  +     VQ LL    + +    K    + PLH  V  ++   T F        
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
           N++   D++         S     V   +        ++      +              
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 396 ---LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAV 451
              LI +GA+V  ++K+ + PLH A    ++  +  L   G   V+ + + G  PL+ A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 452 EMHNLSIVEQLL-KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
              +      L+ K+ A  +  D  G     +A+   N  + +  L N  D
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 7e-13
 Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 21/231 (9%)

Query: 50  LHIAATK-NIRLVRLLLEYN-VDVNAVDNLGNTVLHTVAS-----------IKTRDPTAV 96
           LH A  +     V+ LL      +   D  G   LH   S            K  +    
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 97  EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI 156
           +    +                + +         +         C +             
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
           L+  GA + +++ F +     A  + +   IEL    G +          K G   L H 
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD----KQGWTPLFHA 179

Query: 217 VRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
           +  GH +A  L++EK GA     D     A D+A+   + ++ +F L++  
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 18/235 (7%)

Query: 313 PLHLVVQRKSWNTTMFKTLL-YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
           PLH             + LL    + +  KD + + PLH ++  Q  +  S L+    +V
Sbjct: 3   PLHQACMEN--EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 372 ------NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSA 425
                 +                  V          ++N       T LH+AV +K    
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
             +L+E+GA V  + +  + PL+ A  + +L ++E L    K+ VN  D+ G T L  A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 485 KIQNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538
              +      L+    A+ +        KG     +A+   NE V    L+   D
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVD----NKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 16/207 (7%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT---KNIR 59
           + +   +++G      ++      I   L  +  N+N     D              N+ 
Sbjct: 25  SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 84

Query: 60  LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
           +V+ L +  +  +        V     ++  +     + L  N A+V IK+K    PLH 
Sbjct: 85  VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 144

Query: 120 AARTGNYKMVRVLIDHGAHT-ECKNHQGYNALH---------VAVGILLRKGADINVENN 169
           AA  G+ K++ +L   G      ++ QG+  L           AV ++ + GA+ ++ +N
Sbjct: 145 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 204

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVN 196
            G  A  +A   +     + FL   V+
Sbjct: 205 KGAKAEDVALNEQ---VKKFFLNNVVD 228

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 84.5 bits (207), Expect = 2e-19
 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 7/210 (3%)

Query: 256 KIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP 313
           +++  LL  GA +++       + LHLA         + LL    +  + +  G T    
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP--- 59

Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
                            L     N+N +  +  TPL +A        V  L+   AD+N 
Sbjct: 60  -LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 374 IDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
            DN G+  LH A       A+  L+ H AN +A++   +TPL +A  + +  A   LL++
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
            A  +    + + P  +A E  +  IV  L
Sbjct: 179 FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.4 bits (199), Expect = 3e-18
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 8/211 (3%)

Query: 327 MFKTLLYHGANVNVKDDEN-KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
           +   LL  GA +N   D+  +T LH+A      DA   L+  GAD N  DN G+ PLH A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 386 VQNGYVAIPNLIRH--GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
           V    + +  ++      N+NAR     TPL +A        +  L+   A ++A    G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
           K  L+ A  ++N   V  LL   AN ++ D    T L LA +  +    + LL N A+  
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 183

Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
                       P  +A E  +  ++ +LLD
Sbjct: 184 ITDH----MDRLPRDVASERLHHDIV-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 78.7 bits (192), Expect = 3e-17
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 17/213 (7%)

Query: 59  RLVRLLLEYNVDVNA-VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
           +++  LL    ++NA +D  G T LH  A  +     A + L    A+ N ++  G TPL
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAA--RFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG---------ILLRKGADINVEN 168
           H A       + ++L+ + A              +             L+   ADIN  +
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 120

Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
           N GKTA   A  + N  A+ + L +  N +     +        L    R G   A K +
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP-----LFLAAREGSYEASKAL 175

Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
           L+  AN    D + +   D+A E  H  IV  L
Sbjct: 176 LDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 77.5 bits (189), Expect = 6e-17
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 6/204 (2%)

Query: 96  VEILKTNRANVNIK-NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           +  L    A +N   +K G+T LH+AAR       + L+D GA    +++ G   LH AV
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV----KHGG 210
                    I + N       +M                G+  +      ++      G 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 211 QLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
             L       +  AV ++L   AN  A+D   +T L +A   G  +  + LLD+ A  + 
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 271 L-QFIHSPLHLAIEKQHIAIVQLL 293
                  P  +A E+ H  IV+LL
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 73.3 bits (178), Expect = 2e-15
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 361 VSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVE 419
           +S L+  GA++N  +D  G+  LH+A +         +                   A  
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 420 QKNMSALNYLLEH--GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
             +   +  +L       ++AR   G  PL +A  +    +VE L+   A++N++D  G+
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
           T LH A  + N   +  LL++ A+ +A+      K  TPL LA    +      LLD   
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQD----DKDETPLFLAAREGSYEASKALLDNFA 180

Query: 538 DLDVKDKNGNTALH 551
           + ++ D        
Sbjct: 181 NREITDHMDRLPRD 194

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 35/130 (26%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
           AD+NA +  G T    A   + T    +L    AN +     D       A   +    +
Sbjct: 114 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 173

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
            LL+   +    D+                                       P  +A+ 
Sbjct: 174 ALLDNFANREITDH-----------------------------------MDRLPRDVASE 198

Query: 123 TGNYKMVRVL 132
             ++ +VR+L
Sbjct: 199 RLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 426 LNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
           ++ LL  GA+++A   + G+  L++A         ++LL   A+ NS D  GRT LH   
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH--- 61

Query: 485 KIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
                  +    +   +    + + +  G TPL LA     E ++  L+  + D++  D 
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 545 NGNTALHP 552
           +G TALH 
Sbjct: 122 SGKTALHW 129

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 4e-18
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 25/233 (10%)

Query: 44  DDGKSCLHIAATKN-----IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEI 98
           +DG + LHIA  +       RLV L  +   +++  +NL  T LH   ++ T  P+ V +
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH--LAVITTLPSVVRL 58

Query: 99  LKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-------------TECKNHQ 145
           L T  A+    ++ G T  H+A    +   +R L+D  A              T      
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 146 GYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHEN 205
                     +L R      V+   G++    A E  +   ++L L++G        +  
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-----ANVNAQ 173

Query: 206 VKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIV 258
           +  G   L      G    V+ ++  GA+   K+    T L +A     + I+
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 9e-18
 Identities = 60/287 (20%), Positives = 98/287 (34%), Gaps = 68/287 (23%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG 171
           +GDTPLHIA   GN   V  L++                     +  + G ++++ NN  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVN---------------------LFQQGGRELDIYNNLR 40

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
           +T   +A        + L +  G +      H                            
Sbjct: 41  QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA----------------------- 77

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-----SPLHLAIEKQH 286
                           +A EH     +  LLD  A              + LH+A+  + 
Sbjct: 78  ---------------HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK 346
              VQLLL R  +   ++ K   +     L+   ++ + +M + LL HGANVN +     
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRS----PLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 178

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
           + LH A        V  LV+ GAD ++ +     PL +A     + I
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 2e-17
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 343 DENKTPLHIAIESQCWDAVSLLVK----HGADVNVIDNQGQMPLHIAVQNGY-VAIPNLI 397
           ++  TPLHIA+      AV  LV      G ++++ +N  Q PLH+AV       +  L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 398 RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ----LGKDPLYIAVEM 453
             GA+  A +++ +T  H+A E ++ + L  LL+  A      +     G   L++AV  
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 454 HNLSIVEQLLKFKANVNSSDQFGRT-VLHLAVKIQNVAILECLLVNKADINAKIISGIWK 512
                V+ LL+  A++++ D       L  AV+  ++++++ L        A + + ++ 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL----LQHGANVNAQMYS 176

Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
           G + LH A       ++  L+    D  +K+ + +T L 
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 215

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 2e-16
 Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 44/260 (16%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           +PLH+A+ + ++  V  L+                                        G
Sbjct: 5   TPLHIAVVQGNLPAVHRLV----------------------------------NLFQQGG 30

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA--- 392
             +++ ++  +TPLH+A+ +     V LLV  GA    +D  GQ   H+A ++       
Sbjct: 31  RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 90

Query: 393 --IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDARTQLGKDPLYI 449
             + +      ++ ARN    T LH+AV  +    +  LLE GA       + G+ PL  
Sbjct: 91  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 150

Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
           AVE ++LS+V+ LL+  ANVN+    G + LH A     + ++  L+ + AD + K    
Sbjct: 151 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC-- 208

Query: 510 IWKGYTPLHLAVESNNEAVI 529
                TPL +A       ++
Sbjct: 209 --HNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 11  EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVD 70
           +G+T    A+ +      +LL ERGA+I+      G+S L  A   N   +  LL  +  
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168

Query: 71  VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
                    +     AS +      V  L  + A+ ++KN   DTPL +A       ++R
Sbjct: 169 NVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 28/118 (23%), Positives = 49/118 (41%)

Query: 37  NINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAV 96
              +    DG + LH+A     +    LL          ++ +     + +++    + V
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 160

Query: 97  EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
           ++L  + ANVN +   G + LH A+  G   +VR L+  GA +  KN      L VA 
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 443 GKDPLYIAVEMHNLSIVEQLLKF----KANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           G  PL+IAV   NL  V +L+         ++  +   +T LHLAV     +++  L+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552
            A   A    G    +        +   A+++       DL+ ++ +G TALH 
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 116

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 8e-16
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 14/202 (6%)

Query: 78  GNTVLHTVASIKTRDPTAVEILKT---NRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
           G++ LH +A I       +E+++    + A +N +N    TPLH+A  T   ++   L+ 
Sbjct: 2   GDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 135 HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
            G   E ++ +G   LH+A          +  ++        +           L L   
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 195 VNVEQCVC----------HENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT 244
                 V            +   +G   L   V   + + V L+L+ GA+V+       +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 245 ALDIAVEHGHLKIVEFLLDHGA 266
              +       +I + L     
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (179), Expect = 2e-15
 Identities = 42/260 (16%), Positives = 72/260 (27%), Gaps = 58/260 (22%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG 171
           +GD+ LH+A       +   +I                       +    A +N +NN  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQ---------------------VKGDLAFLNFQNNLQ 39

Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
           +T   +A         E  L  G + E      N           + +            
Sbjct: 40  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 99

Query: 232 GANVHAKDQL-CKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIV 290
             ++         T L +A  HG+L IVE L+  GA V++ +  +               
Sbjct: 100 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN--------------- 144

Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
                               +  LHL       N  +   LL  GA+VN    +  +P  
Sbjct: 145 -------------------GRTALHL--AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 351 IAIESQCWDAVSLLVKHGAD 370
           +            L +   +
Sbjct: 184 LTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 9e-14
 Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 344 ENKTPLHIAIESQCWDAVSLLVK----HGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRH 399
           +  + LH+AI  +       +++      A +N  +N  Q PLH+AV      I   +  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 400 GANVNARNKYAKTPLHIAVEQK-------NMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
                    +          ++        ++         + + A    G   L++A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 453 MHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511
              L IVE L+   A+VN+ +   GRT LHLAV +QN  ++  LL   AD+N       +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT----Y 176

Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
           +GY+P  L     +  +  +L     +         
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 1e-13
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 9/211 (4%)

Query: 210 GQLLLHL-VRNGHQNAVKLILE----KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
           G   LHL + +  +     ++       A ++ ++ L +T L +AV     +I E LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 265 GACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTK---GPTNKAPLHLVVQRK 321
           G   +   F  +       +Q       +L ++    ++++       N      +    
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
            +   +   +         +    +T LH+A++ Q  D VSLL+K GADVN +  QG  P
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 382 LHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
             +        I   L +           ++
Sbjct: 182 YQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 313 PLHLVVQRKSWNTTMF--KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
            LHL +  +    TM   + +    A +N +++  +TPLH+A+ +   +    L+  G D
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-------LIRHGANVNARNKYAKTPLHIAVEQKNM 423
             + D +G  PLH+A + G +A               + + A N    T LH+A     +
Sbjct: 65  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 124

Query: 424 SALNYLLEHGAQVDARTQL-GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
             +  L+  GA V+A+    G+  L++AV++ N  +V  LLK  A+VN     G +   L
Sbjct: 125 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 483 AVKIQNVAILECLLVNKADINAKI 506
                +  I + L     +    +
Sbjct: 185 TWGRPSTRIQQQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 7/200 (3%)

Query: 276 SPLHLAIEKQHIAIVQLLLRR-NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
           S LHLAI  +  A+   ++R+   +   +N +    + PLHL V                
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 335 GANVNVKDDENKTPLHIAI----ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
              +          L                       + +   +  G   LH+A  +GY
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 391 VAIPNLIRH--GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLY 448
           + I  L+               +T LH+AV+ +N   ++ LL+ GA V+  T  G  P  
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 449 IAVEMHNLSIVEQLLKFKAN 468
           +     +  I +QL +    
Sbjct: 184 LTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 7e-12
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 378 GQMPLHIAVQNGYVA-----IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
           G   LH+A+ +   A     I  +    A +N +N   +TPLH+AV          LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
           G   + R   G  PL++A E   L+ V  L +     +       T  +    +   +I 
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 493 ---ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
                + +  +            G T LHLAV+  N  +++ LL    D++     G + 
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 550 LH 551
             
Sbjct: 182 YQ 183

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 38/203 (18%), Positives = 67/203 (33%), Gaps = 51/203 (25%)

Query: 45  DGKSCLHIAATKN-----IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEI- 98
           DG S LH+A         + ++R +      +N  +NL  T LH        +     + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 99  ------------------------------------LKTNRANVNIKNKEGDTPLHIAAR 122
                                                    + +   N  G T LH+A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 123 TGNYKMVRVLIDHGAHTECKNHQ-GYNALHVA--------VGILLRKGADINVENNFGKT 173
            G   +V +L+  GA    +    G  ALH+A        V +LL+ GAD+N     G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 174 AFQMAYEMKNFPAIELFLKYGVN 196
            +Q+ +   +    +   +  + 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 513 GYTPLHLAVESNNEA----VINKLLDYNPDLDVKDKNGNTALHP 552
           G + LHLA+    +A    VI ++      L+ ++    T LH 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 1e-14
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 3/156 (1%)

Query: 111 KEGDTPLHIAARTGNYKMVRVLID-HGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169
           + GD  L  AA  G+ + VR L+     H +  N  G  AL V +        ++  +  
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLVRNGHQNAVKLI 228
                        +  A   FL     + +     NV    G L +HL       AV   
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
           L   +++H +D    T L++A++ G   +V+ L  H
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-13
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNINI-NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
            L  A  +  +  V+ LL R   + +  N  G T    +       +             
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
                    +          +         +HGADVNV D  G +P+H+AVQ G+ A+ +
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLV------EHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
            +   ++++ R+    TPL +A+++     ++ L  H
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 2/151 (1%)

Query: 347 TPLHIAIESQCWDAV-SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405
             L  A        V  LL +     + ++  G+  L + +         L++ GA+ N 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
           ++    +P+H A     +  L  L+EHGA V+     G  P+++AV+  + ++V  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
            ++++  D  G T L LA++     +++ L 
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
              +A N+ G T  Q  +  S     +L  ++GA+ N             A T  +  ++
Sbjct: 27  VHPDALNRFGKTALQVMMFGSTAIALEL-LKQGASPNVQDTSGTSPVHDAARTGFLDTLK 85

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
           +L+E+  DVN  D  G   +H           +        ++++ ++  G TPL +A +
Sbjct: 86  VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA---AESDLHRRDARGLTPLELALQ 142

Query: 123 TGNYKMVRVLIDH 135
            G   +V +L  H
Sbjct: 143 RGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 381 PLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
            L  A   G V      L R   + +A N++ KT     +   + +    LL+ GA  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
           +   G  P++ A     L  ++ L++  A+VN  D  G   +HLAV+  + A++  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A 122

Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
           ++D++ +      +G TPL LA++   + +++ L  
Sbjct: 123 ESDLHRRD----ARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 50  LHIAATK-NIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVN 107
           L  AA + +++ VR LL    V  +A++  G T L     +          L    A+ N
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---MMFGSTAIALELLKQGASPN 62

Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR-------K 160
           +++  G +P+H AARTG    ++VL++HGA     +  G   +H+AV             
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFL 191
            +D++  +  G T  ++A +      +++  
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (166), Expect = 2e-14
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 2/152 (1%)

Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGA--HTECKNHQGYNALHVAVGILLRKGADINVENN 169
           +    L  AAR G    VR+L+ +GA   T+       +           +       + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
             +T                 +   +       +         L     + HQ  V+L++
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
           + GA+VH + + CKTA DI++++G+  + E L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.8 bits (161), Expect = 8e-14
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
             L  A   G    V  L+ +GA   +     SPLHLA +  H +  ++LLR   +    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
                T      L +     +  + + LL HGA+VN KD    T LH A E    + V L
Sbjct: 64  TKVDRT-----PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
           L+K+GADV+      +    I++ NG   +  +++
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 41/149 (27%), Positives = 73/149 (48%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR 406
             L  A  +   D V +L+ +GA               A    +     L+R G + +AR
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
            K  +TPLH+A  + + + +  LL+HGA V+A+  L    L+ A E ++  +VE L+K+ 
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECL 495
           A+V++  +F +T   +++   N  + E L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
            L    +         + L+ +GA               A          LL    +   
Sbjct: 5   KLLEAARAG--QDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 373 VIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
                       A +     +  L++HGA+VNA++    T LH A E  +   +  L+++
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
           GA V  +++  K    I+++  N  + E +L+
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAE-ILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             L  A        +  L+ +GA        G  PL++A +  + S  E LL+   + ++
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
             +  RT LH+A    +  I+E LL + AD+NAK         T LH A E N++ V+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD----MLKMTALHWATEHNHQEVVEL 118

Query: 532 LLDYNPDLDVKDKNGNTALH 551
           L+ Y  D+  + K   TA  
Sbjct: 119 LIKYGADVHTQSKFCKTAFD 138

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 95  AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
            VE+L    A+V+ ++K   T   I+   GN  +  +L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 45  DGKSCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
           D    L  AA       VR+L+         D LG +      + +    +  E+L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTS--PLHLAAQYGHFSTTEVLLRAG 57

Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
            + + + K   TPLH+AA  G+  +V VL+ HGA    K+     ALH A        V 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
           +L++ GAD++ ++ F KTAF ++ +  N    E+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 3e-13
 Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 3/154 (1%)

Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTA 174
             L  AA  G+ + +  L+ +  +   +N  G  AL V           + +        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 175 FQMAYEMKNFPAIE---LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
            +  + + +  A       L+  +  +  V  E+ +    L L       +    L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
            +NV  ++    TA D+A  +G  ++V  +  +G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 3e-09
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 4/159 (2%)

Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
           G  L      G    +  +L+   NV+A++   +TAL +            LL       
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 270 SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFK 329
             +   + +H A     +  +Q LL    +    + +G             +     +  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK- 120

Query: 330 TLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
              +  +NV  ++ +  T   +A      + VSL+  +G
Sbjct: 121 ---HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 9e-09
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
           + L  A  +  +  +  LL    NN+N+N +   N      +   K  N  + + LL  G
Sbjct: 3   NELASAAARGDLEQLTSLL---QNNVNVNAQ---NGFGRTALQVMKLGNPEIARRLLLRG 56

Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
           AN ++KD      +H A  +   D +  L++  ADVN+ DN+G +PLH+A + G++ +  
Sbjct: 57  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 396 LIRHGAN--VNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
            +       V  RN    T   +A        ++ +  +G
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 1/151 (0%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR 406
             L  A      + ++ L+++  +VN  +  G+  L +           L+  GAN + +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL-LKF 465
           ++     +H A     +  L  LLE  A V+     G  PL++A +  +L +VE L    
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
            +NV   +  G T   LA       ++  + 
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 8e-07
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 7/154 (4%)

Query: 48  SCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV 106
           + L  AA + ++  +  LL+ NV+VNA +  G T L  +          + +   N    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 107 NIKNKEGDTPLH------IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK 160
           +                        ++    + D+  +           L V   ++   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
            +++   N+ G TA  +A        + L    G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 7e-06
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 3   ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
            +VNA N  G T  Q   + +     +          D     G + +H AA        
Sbjct: 25  VNVNAQNGFGRTALQVMKLGNPEIARR--LLLRGANPDLKDRTGFAVIHDAARAGFLDTL 82

Query: 63  LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
             L        +++    +   +A+ +        ++K   +NV  +N +GDT   +A  
Sbjct: 83  QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 142

Query: 123 TGNYKMVRVLIDHG 136
            G  ++V ++  +G
Sbjct: 143 YGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 5/156 (3%)

Query: 381 PLHIAVQNGYVAI-PNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
            L  A   G +    +L+++  NVNA+N + +T L +        A   LL         
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
                     A      ++   L          ++    +   A +     +   +    
Sbjct: 64  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 123

Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
           +++  +      KG T   LA       V++ +   
Sbjct: 124 SNVGHRN----HKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 3/153 (1%)

Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
            L     R   +     +LL +  NVN ++   +T L +        A  LL++      
Sbjct: 4   ELASAAARG--DLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 373 VIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKN-MSALNYLLE 431
                  +    A       +  L+   A+VN  +     PLH+A ++ +       +  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
             + V  R   G     +A       +V  +  
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 24/140 (17%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 7   ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFP-----DDGKSCLHIAA----TKN 57
           A     +    +A+ +            G ++ +  P     +  ++ LH+A       +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 58  IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
           + +V  L++ + +++     G+T         T +   +++L   +A++ I N+ G+TPL
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGST--ALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 118 HIAARTGNYKMVRVLIDHGA 137
            IA R  +     +L    +
Sbjct: 119 DIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 3e-10
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 344 ENKTPLHI---AIESQCWDAVSLLVKHGADVNV------IDNQGQMPLHIAVQNGYVA-- 392
           +    LH    A++++    +      G D+             +  LH+AV++      
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 393 --IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
             +  L+++  N++ +     T LH      N   L  LL   A ++   + G+ PL IA
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 451 VEMHNLSIVEQLLKFKAN 468
             + +    E L +  + 
Sbjct: 122 KRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 7e-09
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 277 PLHLAIEKQHIAIVQLLLRRN---NNNININTKGPTNKAPLHLVVQRKSWNTT-MFKTLL 332
            L  A++ + I  +             I +      ++  LHL V+     +  +   L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
            +  N++ +  +  T LH    +   + + LL++  A + + +  G+ PL IA +  +  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 393 IPN-LIRHGAN 402
               L +  + 
Sbjct: 129 CEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 33/163 (20%)

Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK------NHQGYNALHVAVGILLRKGAD 163
                  L  A +T +   +      G     K      +     ALH+AV         
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV--------- 53

Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQN 223
                         + +  +   ++  ++   N+++     +         +     +  
Sbjct: 54  -------------RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH-----YCCLTDNAE 95

Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
            +KL+L   A++   ++  +T LDIA    H    E L    +
Sbjct: 96  CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 25/131 (19%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 381 PLHIAVQNGYV-AIPNLIRHGANVNAR------NKYAKTPLHIAV---EQKNMSALNYLL 430
            L  AV+   +  +      G ++  +      ++  +T LH+AV   ++ ++  +++L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVA 490
           ++   +D +T  G   L+      N   ++ LL+ KA++  +++ G T L +A ++++  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 491 ILECLLVNKAD 501
             E L    + 
Sbjct: 129 CEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL------GKDPLYIAVEMH---N 455
           A        L  AV+ +++  L      G  +  +  L       +  L++AV      +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
           L IV+ L++   N++     G T LH      N   L+ LL  KA I          G T
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN----ESGET 116

Query: 516 PLHLAVESNNEAVINKLLD 534
           PL +A    +E     L  
Sbjct: 117 PLDIAKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 46/167 (27%)

Query: 213 LLHLVRNGHQNAVKLILEKGANVHAK------DQLCKTALDIAV---EHGHLKIVEFLLD 263
           L   V+      +      G ++  K       +  +TAL +AV   +   L IV+FL+ 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 264 HGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
           +   +D      S                                       L     + 
Sbjct: 70  NSGNLDKQTGKGST-------------------------------------ALHYCCLTD 92

Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
           N    K LL   A++ + ++  +TPL IA   +      LL +  + 
Sbjct: 93  NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 45  DGKSCLHI----AATKNIRLVRLLLEYNVDVNA------VDNLGNTVLHTVASIKTRDPT 94
           D  + LH       T++I  +       VD+              T LH       R   
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 95  A-VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
             V+ L  N  N++ +  +G T LH    T N + +++L+   A  E  N  G   L +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 154 --------VGILLRKGAD 163
                     +L +  + 
Sbjct: 122 KRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 56/175 (32%)

Query: 78  GNTVLHT-VASIKTRDPTAVEILKTNRANVNIK------NKEGDTPLHIAART---GNYK 127
               LH+   ++KTRD   +     +  ++  K      ++  +T LH+A R+    +  
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 128 MVRVLIDHGAHTECKNHQGY--------NALHVAVGILLRKGADINVENNFGKTAFQMAY 179
           +V  L+ +  + + +  +G               + +LLR  A I + N  G+T   +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA- 121

Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
                                                 R  H++  +L+ +  + 
Sbjct: 122 -------------------------------------KRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSS------DQFGRTVLHLAVKIQ---NVAILECLL 496
            L  AV+  ++  + Q      ++          +   T LHLAV+     ++ I++ L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
            N  +++ +   G    +        ++N   +  LL     +++ +++G T L 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCL----TDNAECLKLLLRGKASIEIANESGETPLD 119

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 5e-09
 Identities = 13/131 (9%), Positives = 27/131 (20%), Gaps = 7/131 (5%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
             L  +   G   +V+ ++                           +     +      +
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV----KFLVQFGV 58

Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK---TPLHIAIESQCWDA 360
           N     +     L       N  + K L+  GA V      +          +E      
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 118

Query: 361 VSLLVKHGADV 371
              L      +
Sbjct: 119 SQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 21/155 (13%), Positives = 39/155 (25%), Gaps = 33/155 (21%)

Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTA 174
             L  ++  G + +V+ +I         N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPND------------------------------ 32

Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
             +        A    +   +       +     G   L       +    K ++E GA 
Sbjct: 33  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 92

Query: 235 VHAKD-QLCKTALDI--AVEHGHLKIVEFLLDHGA 266
           V A      +TA D    +E G+ +  +FL     
Sbjct: 93  VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 1/128 (0%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             L  +  +     +  ++            G   L+ AV   +  IV+ L++F  NVN+
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
           +D  G T LH A    NV + + L+ + A + A   S +          +E         
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-TAADKCEEMEEGYTQCSQF 121

Query: 532 LLDYNPDL 539
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 4/127 (3%)

Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR 406
             L  +     +D V  ++    D ++ +++G   LH AV  G+  I   +         
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 407 NKYA-KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQL 462
                 TPLH A    N+    +L+E GA V A T             +E       + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 463 LKFKANV 469
              +  +
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 16/127 (12%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 14  TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNA 73
            L   + +  +  + + +     + + P  +   +  +     +  +V+ L+++ V+VNA
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 74  VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGD---TPLHIAARTGNYKMVR 130
            D+ G T      +    +    + L  + A V                    G  +  +
Sbjct: 63  ADSDGWT--PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 131 VLIDHGA 137
            L     
Sbjct: 121 FLYGVQE 127

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-07
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 4/121 (3%)

Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
             L  A   G ++ V  LL+ GA  ++           +      + +        +   
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAE----LLLLHGAE 60

Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
                       +    +         L   GA ++V+D   + P+ +A E    D    
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 364 L 364
           L
Sbjct: 121 L 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 30/153 (19%)

Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNF 170
           +     L  AA  G  + VR L++ GA+    N                           
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNS-------------------------- 34

Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
               +                +  +         +     + +    R G  + + ++  
Sbjct: 35  ----YGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 90

Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
            GA +  +D   +  +D+A E GH  +  +L  
Sbjct: 91  AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
             L  A  +  +  +  LLE GA  +A    G+ P+ + +          LL       +
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINK 531
                   +H A +   +  L  L    A ++ +       G  P+ LA E  +  V   
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD----AWGRLPVDLAEELGHRDVARY 120

Query: 532 LLD 534
           L  
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGAN 402
           + +   L  A      + V  L++ GA+ N  ++ G+ P+ + +         L+ HGA 
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 403 VNARNKYAKT-PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
            N  +    T P+H A  +  +  L  L   GA++D R   G+ P+ +A E+ +  +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 462 LL 463
           L 
Sbjct: 121 LR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
            L  A  +  +  V+ LL    N    N+ G      + +   R +    +         
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL 396
              +    +       +++          + GA ++V D  G++P+ +A + G+  +   
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 397 IRHGA 401
           +R  A
Sbjct: 121 LRAAA 125

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (100), Expect = 6e-06
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 241 LCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
           +C      A+++G L  V+  +  G  V+                    +   L     +
Sbjct: 1   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60

Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
           IN   K         L+      + +  K LL  GA+  VK  +  T L          A
Sbjct: 61  INAPDKHHIT----PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQA 112

Query: 361 VSLLVK 366
           +  L++
Sbjct: 113 IKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 24/147 (16%), Positives = 41/147 (27%), Gaps = 30/147 (20%)

Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK 172
            D     A + G+   V+  +  G                                    
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE---------------------------- 33

Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKG 232
                          +L +   + ++    +   KH    LL  V  GH + VKL+L KG
Sbjct: 34  --GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91

Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVE 259
           A+   K     TAL+         +++
Sbjct: 92  ADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	553
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-53  Score=407.64  Aligned_cols=391  Identities=33%  Similarity=0.432  Sum_probs=256.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCC
Q psy11230         14 TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD   92 (553)
Q Consensus        14 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (553)
                      ||||.||..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|+++|++++.++..|+||||+|+..  ++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~--g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI--GH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH--TC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc--CC
Confidence            5555555555555555555555555554 5555555555555555 555555555555555555555555555555  55


Q ss_pred             hHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCC
Q psy11230         93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK  172 (553)
Q Consensus        93 ~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~  172 (553)
                      .+++++|+..+.++........+++..+...+...........+......+                         .   
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~---  130 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT-------------------------K---  130 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-------------------------T---
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccc-------------------------c---
Confidence            555555555555554444555555555555555555444444433332222                         1   


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHc
Q psy11230        173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEH  252 (553)
Q Consensus       173 ~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~  252 (553)
                                                         .+.+++..++..++.+++++|++++.+++..+..|.+||++|+..
T Consensus       131 -----------------------------------~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~  175 (408)
T d1n11a_         131 -----------------------------------KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH  175 (408)
T ss_dssp             -----------------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT
T ss_pred             -----------------------------------ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc
Confidence                                               222334444445555666666666666666666677777777777


Q ss_pred             CCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHH
Q psy11230        253 GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL  332 (553)
Q Consensus       253 ~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~  332 (553)
                      |+.+++++|+++|+++.                                                               
T Consensus       176 ~~~~~~~~Ll~~g~~~~---------------------------------------------------------------  192 (408)
T d1n11a_         176 NNLDIVKLLLPRGGSPH---------------------------------------------------------------  192 (408)
T ss_dssp             TCHHHHHHHGGGTCCSC---------------------------------------------------------------
T ss_pred             CCHHHHHHHHhcCCccc---------------------------------------------------------------
Confidence            77777776666655432                                                               


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCC
Q psy11230        333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAK  411 (553)
Q Consensus       333 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~  411 (553)
                             ..+..+.||++.+......+....++..+......+..+.||++.|+..+..++. .++..+...+..+..|.
T Consensus       193 -------~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~  265 (408)
T d1n11a_         193 -------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL  265 (408)
T ss_dssp             -------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred             -------ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCC
Confidence                   2334455566666666666666666665555555555566666666666666555 34445555666667778


Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      ||++.|+..++.+++++|+++|++++..+..+.|||+.++..++.++++++++.|++++.++.+|.||||+|+++|+.++
T Consensus       266 ~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~i  345 (408)
T d1n11a_         266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI  345 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            88888888888899999999888888888888899999999999999999999999998888889999999999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH---HhcCCCCCCCCC
Q psy11230        492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL---LDYNPDLDVKDK  544 (553)
Q Consensus       492 ~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L---l~~g~~~~~~~~  544 (553)
                      +++|+++|++++..+.    .|.||||+|++.|+.++|++|   ++.+++..+.+.
T Consensus       346 v~~Ll~~GAd~n~~d~----~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         346 VTLLLKNGASPNEVSS----DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             HHHHHHTTCCSCCCCS----SSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             HHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            9999999999888777    788999999999998888755   456666666665

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-53  Score=402.54  Aligned_cols=367  Identities=29%  Similarity=0.441  Sum_probs=307.8

Q ss_pred             cHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy11230         48 SCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY  126 (553)
Q Consensus        48 ~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~  126 (553)
                      ||||.||..|+ ++|++|++.|++++..|..|+||||+|+..  |+.+++++|+++|++++.++..|+|||++|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~--g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH--TCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            67777777777 777777777777777777777777777777  777777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccc
Q psy11230        127 KMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV  206 (553)
Q Consensus       127 ~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  206 (553)
                      +++++|++.+.++.......                                                            
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~------------------------------------------------------------   99 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAG------------------------------------------------------------   99 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTC------------------------------------------------------------
T ss_pred             HHHHHHHHhhhccccccccc------------------------------------------------------------
Confidence            77777777655543322222                                                            


Q ss_pred             cCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCC
Q psy11230        207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQH  286 (553)
Q Consensus       207 ~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~  286 (553)
                         ..+...+...+...........+......+..+.++++.|+..++.+++++|++.+.+                   
T Consensus       100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-------------------  157 (408)
T d1n11a_         100 ---HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-------------------  157 (408)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------
T ss_pred             ---cchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence               2233333344555555555666666677777788888888888777777777766543                   


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230        287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK  366 (553)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~  366 (553)
                                                                         ++..+..+.+||++|+..++.+++++|++
T Consensus       158 ---------------------------------------------------~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~  186 (408)
T d1n11a_         158 ---------------------------------------------------PNAAGKNGLTPLHVAVHHNNLDIVKLLLP  186 (408)
T ss_dssp             ---------------------------------------------------TTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred             ---------------------------------------------------CCcCCCcCchHHHHHHHcCCHHHHHHHHh
Confidence                                                               33445667899999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCC
Q psy11230        367 HGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD  445 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t  445 (553)
                      +|++++..+..|.+|++.++.....+.. .++..+......+..+.|||+.|+..+..++++++++.+...+..+..|.|
T Consensus       187 ~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~  266 (408)
T d1n11a_         187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT  266 (408)
T ss_dssp             GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             cCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCC
Confidence            9999999999999999999999998888 566777777778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230        446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN  525 (553)
Q Consensus       446 ~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~  525 (553)
                      |++.|+..++.+++++|+++|++++..+..+.|||+.++..++.++++++++.|++++..+.    .|.||||.|+++|+
T Consensus       267 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~----~G~T~Lh~A~~~g~  342 (408)
T d1n11a_         267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK----LGYSPLHQAAQQGH  342 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTC
T ss_pred             hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCC----CCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999987    89999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        526 EAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       526 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      .++|++|+++||+++++|.+|+||||+|
T Consensus       343 ~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         343 TDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-35  Score=261.57  Aligned_cols=272  Identities=31%  Similarity=0.332  Sum_probs=223.9

Q ss_pred             CchhhHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCC
Q psy11230        209 GGQLLLHLVRNGHQNAVKLILEKGANVHAKD-QLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQH  286 (553)
Q Consensus       209 ~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~  286 (553)
                      +.++|+.|++.|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|++.+........ ..+|...+...+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            4588999999999999999999999998765 4689999999999999999999998876655443 4566777776666


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230        287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK  366 (553)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~  366 (553)
                      .+...+.++.                                      ..+....+..+.++++.|+..++...++.+++
T Consensus        85 ~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~  126 (285)
T d1wdya_          85 VKLLKLFLSK--------------------------------------GADVNECDFYGFTAFMEAAVYGKVKALKFLYK  126 (285)
T ss_dssp             HHHHHHHHHT--------------------------------------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhhhh--------------------------------------cccccccccCCCchhHHHHHhcchhhhhhhhh
Confidence            6666666554                                      22233345667889999999999999999998


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh-CCCCccccccCCCC
Q psy11230        367 HGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKD  445 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t  445 (553)
                      ...+++.......  ..                    ......|.||||+|+++|+.+++++|++ .|++++..+..|.+
T Consensus       127 ~~~~~~~~~~~~~--~~--------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~  184 (285)
T d1wdya_         127 RGANVNLRRKTKE--DQ--------------------ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN  184 (285)
T ss_dssp             TTCCTTCCCCCCH--HH--------------------HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             hcccccccccchh--hh--------------------hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCc
Confidence            8777665433221  10                    1123567899999999999999999997 58999999999999


Q ss_pred             HHHHHHHhC----CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc-cCCcccccccccCCCCcHHHHH
Q psy11230        446 PLYIAVEMH----NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN-KADINAKIISGIWKGYTPLHLA  520 (553)
Q Consensus       446 ~l~~A~~~~----~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~t~l~~A  520 (553)
                      ++..+...+    ..+++++|+++|++++.++..|.||||+|+..++.+++++|++. |++++..+.    .|.||||+|
T Consensus       185 ~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~----~G~TpL~~A  260 (285)
T d1wdya_         185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS----DGKTALLLA  260 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT----TSCCHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCC----CCCCHHHHH
Confidence            888776543    35799999999999999999999999999999999999999985 899999877    899999999


Q ss_pred             HhhCCHHHHHHHHhcCCCCCCCCC
Q psy11230        521 VESNNEAVINKLLDYNPDLDVKDK  544 (553)
Q Consensus       521 ~~~~~~~~v~~Ll~~g~~~~~~~~  544 (553)
                      +++|+.++|++|+++||+++++|.
T Consensus       261 ~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         261 VELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999999984

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=255.14  Aligned_cols=218  Identities=28%  Similarity=0.365  Sum_probs=185.0

Q ss_pred             CCchHHHHHhccccChHHH-HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy11230        310 NKAPLHLVVQRKSWNTTMF-KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN  388 (553)
Q Consensus       310 ~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  388 (553)
                      ..+.++.++..+..  +.+ ++|.+.+..++.+|..|+||||+|+..|+.+++++|++.+......+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~--~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKL--EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCH--HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCH--HHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            35567767777764  445 555667778888888899999999999999999999888888888888888888888888


Q ss_pred             CCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q psy11230        389 GYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKA  467 (553)
Q Consensus       389 ~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~  467 (553)
                      ++.+++ .++.++.+++..+..|+||||+|+.+|+.+++++|+++|++++..+..|.||||+|+..++.+++++|.+.|.
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            888887 6778888888888888899999999999999999998888888888888899999999999889999888888


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230        468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD  534 (553)
Q Consensus       468 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  534 (553)
                      +++..+..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+| ..|+.+++++|+|
T Consensus       161 ~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~----~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK----EEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCC----CCCCHHHHH-HCCCHHHHhcccC
Confidence            8888888889999999999999999999999998888777    788999887 4688888888886

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=253.12  Aligned_cols=204  Identities=26%  Similarity=0.315  Sum_probs=159.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHH-hCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCH
Q psy11230        346 KTPLHIAIESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNM  423 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  423 (553)
                      .+.++.++..|+.+.++.++ +.+..++.+|..|+||||+|+..|+.+++ .++..+.........+.++++.++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            46677778888877775554 45667777777888888888888888777 45566666666677777888888888888


Q ss_pred             HHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcc
Q psy11230        424 SALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN  503 (553)
Q Consensus       424 ~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  503 (553)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|++.|.+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            88888888888888788888888888888888888888888888887777778888888888888888888888888877


Q ss_pred             cccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        504 AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       504 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      ..+.    .|.||||.|+.+|+.++|++|+++|++++.+|.+|+||||+|
T Consensus       164 ~~d~----~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         164 IQDT----EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             CCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             eccC----CCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            7766    777888888888888888888888888888888888888776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-35  Score=261.35  Aligned_cols=228  Identities=25%  Similarity=0.260  Sum_probs=182.5

Q ss_pred             ccCCCCCchHHHHHhccccChHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcH
Q psy11230        305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN---VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP  381 (553)
Q Consensus       305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  381 (553)
                      ..+..|.||||+|+..++.  +++++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~--~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHE--PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCH--HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCH--HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            4568899999999999976  999999999887   56678889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCchHHHHH-HcCCCCCCCCC----------CCChHHHHHH---hcCCHH-HHHHHHhCCCCccccccCCCCH
Q psy11230        382 LHIAVQNGYVAIPNLI-RHGANVNARNK----------YAKTPLHIAV---EQKNMS-ALNYLLEHGAQVDARTQLGKDP  446 (553)
Q Consensus       382 l~~a~~~~~~~~~~ll-~~~~~~~~~~~----------~~~~~l~~a~---~~~~~~-~~~~Ll~~g~~~~~~~~~~~t~  446 (553)
                      |++|+..+..++..++ +.+........          ...+....+.   ...... ........+.+++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999988655 33322111100          0001111111   111111 1112223466678889999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230        447 LYIAVEMHNLSIVEQLLKFKANVNSS-DQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN  525 (553)
Q Consensus       447 l~~A~~~~~~~~v~~L~~~g~~~~~~-~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~  525 (553)
                      ||+|+..++.+++++|++++++.+.+ +..|.||||+|+..++.+++++|+++|++++..+.    .|.||||+|+.+|+
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~----~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----GGRTPLGSALLRPN  237 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHTSSC
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHCCC
Confidence            99999999999999999999988754 57899999999999999999999999999999887    89999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy11230        526 EAVINKLLDYNPD  538 (553)
Q Consensus       526 ~~~v~~Ll~~g~~  538 (553)
                      .+++++|+++||+
T Consensus       238 ~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         238 PILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=259.25  Aligned_cols=274  Identities=27%  Similarity=0.337  Sum_probs=211.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK   89 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~   89 (553)
                      ++.|+|++|+..|++++|++|++.|++++.+.+..|.||||+|+..|+ +++++|++.+......+..+.+|.++++.. 
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~-   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc-
Confidence            467999999999999999999999999998867789999999999999 999999999999999999999999999998 


Q ss_pred             CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230         90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN  169 (553)
Q Consensus        90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~  169 (553)
                       +..+...++++...+....+..+.|++++|+..|+..+++.++....+++.........               .....
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~  146 (285)
T d1wdya_          83 -GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ---------------ERLRK  146 (285)
T ss_dssp             -TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH---------------HHTTC
T ss_pred             -CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhh---------------hhhcc
Confidence             99999999999988888888999999999999999999999999887766544332211               12345


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCccchhccccccCCchhhHHHH----HcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230        170 FGKTAFQMAYEMKNFPAIELFLKY-GVNVEQCVCHENVKHGGQLLLHLV----RNGHQNAVKLILEKGANVHAKDQLCKT  244 (553)
Q Consensus       170 ~~~~~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~a~----~~g~~~~v~~Ll~~~~~~~~~~~~~~~  244 (553)
                      .|.|||++|+..|+.+++++|++. |++++..     ...+.++...+.    ..+..+++++|+++|++++.++..|.|
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t  221 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNAC-----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC-----CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccc-----cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC
Confidence            677788888888877777777754 4444321     122223333322    233345667777777777666666777


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccC
Q psy11230        245 ALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN  324 (553)
Q Consensus       245 ~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  324 (553)
                      |||+|+..|+.+++++|+++                                                            
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~------------------------------------------------------------  241 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQ------------------------------------------------------------  241 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHS------------------------------------------------------------
T ss_pred             ccchhhhcCcHHHHHHHHHc------------------------------------------------------------
Confidence            77777776666666666643                                                            


Q ss_pred             hHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC
Q psy11230        325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID  375 (553)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~  375 (553)
                               .|.+++..|.+|.||||+|++.|+.+++++|+++|++++..|
T Consensus       242 ---------~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         242 ---------EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             ---------SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             ---------CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence                     134455567778888888888888888888888888888765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-35  Score=258.23  Aligned_cols=242  Identities=19%  Similarity=0.200  Sum_probs=166.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230          8 TNKEGITLFQQAIVSSQTPIAKLLAERGAN---INDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus         8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      .|++|.||||.||..|+.++|++|++.|++   ++.+ +..|+||||+|+..|+ +++++|++.|++++..|..|+||||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            467778888888888888888888877766   3344 6677777777777777 7777777777777777777777777


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCC
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD  163 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~  163 (553)
                      +|+..  ++.+++++|++.+...+.....   ........-..+.............        ............+..
T Consensus        84 ~A~~~--~~~~~~~~Ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  150 (255)
T d1oy3d_          84 LACRV--RAHTCACVLLQPRPSHPRDASD---TYLTQSQDCTPDTSHAPAAVDSQPN--------PENEEEPRDEDWRLQ  150 (255)
T ss_dssp             HHTTT--TCHHHHHHHSSSCCSSCCCC----------------------------------------------CCCGGGG
T ss_pred             hhhcc--CchHHHHHHHhhccchhcccch---hhhhHHhhhcccchHHHHHHHhhcc--------hhHHHHHHhhhcCcc
Confidence            77776  7777777777765433221111   1111111000000000000000000        000001122233445


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Q psy11230        164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK  243 (553)
Q Consensus       164 ~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~  243 (553)
                      ++.++..|.|||++|+..++.+++++|++.++....    .....+.+||+.|+..|+.+++++|+++|++++.++..|+
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~----~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~  226 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK----PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR  226 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC----CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccccCcccccccccccccccccchhcccccccc----cccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCC
Confidence            677888999999999999999999999999888764    2245678899999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCC
Q psy11230        244 TALDIAVEHGHLKIVEFLLDHGAC  267 (553)
Q Consensus       244 ~~l~~A~~~~~~e~v~~Ll~~~~~  267 (553)
                      |||++|+..++.+++++|+++|++
T Consensus       227 t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         227 TPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-33  Score=253.23  Aligned_cols=270  Identities=24%  Similarity=0.306  Sum_probs=162.5

Q ss_pred             CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHH
Q psy11230         79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL  158 (553)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~  158 (553)
                      .||||++++. .++.++++.|.+.+++.... .+|+||||+||..|+.++|++|+.+                       
T Consensus         1 ~~p~~~~~~~-~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~-----------------------   55 (277)
T d2fo1e1           1 ESPIKLHTEA-AGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVH-----------------------   55 (277)
T ss_dssp             CCCCHHHHHH-HSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHH-----------------------
T ss_pred             CChHHHHHHh-CCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhc-----------------------
Confidence            3788877665 38888888888877665332 3588999999999999999888753                       


Q ss_pred             hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCC
Q psy11230        159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAK  238 (553)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~  238 (553)
                                                                                       ..+.+++.|++++.+
T Consensus        56 -----------------------------------------------------------------~~~~~l~~Gadvn~~   70 (277)
T d2fo1e1          56 -----------------------------------------------------------------EAKECIAAGADVNAM   70 (277)
T ss_dssp             -----------------------------------------------------------------HHHHHHHTCCCTTCC
T ss_pred             -----------------------------------------------------------------chhHHHHcCCCcccc
Confidence                                                                             123445555555556


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHH
Q psy11230        239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLV  317 (553)
Q Consensus       239 ~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  317 (553)
                      +.+|+||||+|+..|+.+++++|+++|+++..... +.+|++.|...++.++++++...                     
T Consensus        71 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~---------------------  129 (277)
T d2fo1e1          71 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS---------------------  129 (277)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred             CCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhc---------------------
Confidence            66666666666666666666666555554433221 33333333333333333333211                     


Q ss_pred             HhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH---HHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH
Q psy11230        318 VQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD---AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP  394 (553)
Q Consensus       318 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  394 (553)
                              ....      ..++..+....++.+.+...+..+   .++.+.+........                    
T Consensus       130 --------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  175 (277)
T d2fo1e1         130 --------TKLK------GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD--------------------  175 (277)
T ss_dssp             --------HHHH------HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC--------------------
T ss_pred             --------cccc------ccccccccccchhHHHHHhccccccccccccccccccccccc--------------------
Confidence                    0000      123444555666666666655433   222232221111100                    


Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH-hCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC
Q psy11230        395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD  473 (553)
Q Consensus       395 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~  473 (553)
                          .....+..+..|.|||++++..++.+++++++ ..+.+.+.++..|+||||+|++.|+.+++++|+++|++++.+|
T Consensus       176 ----~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d  251 (277)
T d2fo1e1         176 ----GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD  251 (277)
T ss_dssp             ----SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             ----ccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcC
Confidence                01122344556777777777777777777654 4667777777777777777777777777777777777777777


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh
Q psy11230        474 QFGRTVLHLAVKIQNVAILECLLV  497 (553)
Q Consensus       474 ~~~~t~l~~A~~~~~~~~~~~Ll~  497 (553)
                      ..|+||||+|+.+|+.+++++|++
T Consensus       252 ~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         252 ATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777777777777764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.3e-34  Score=254.65  Aligned_cols=204  Identities=24%  Similarity=0.332  Sum_probs=174.9

Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcC----CC
Q psy11230        327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHG----AN  402 (553)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~----~~  402 (553)
                      ..+.+++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||++.|+..+..++..++...    ..
T Consensus        56 ~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~  135 (277)
T d2fo1e1          56 EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  135 (277)
T ss_dssp             HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             chhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccc
Confidence            34567788999999999999999999999999999999999999999999999999999999998888655332    34


Q ss_pred             CCCCCCCCChHHHHHHhcCCH---HHHHHHHhCCC--------CccccccCCCCHHHHHHHhCCHHHHHHHH-hcCCCCC
Q psy11230        403 VNARNKYAKTPLHIAVEQKNM---SALNYLLEHGA--------QVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVN  470 (553)
Q Consensus       403 ~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~g~--------~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~g~~~~  470 (553)
                      ++..+..+.++.+.+...+..   ..+.++.+...        ..+..+..|.|||++++..++.+++++++ ..+.+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~  215 (277)
T d2fo1e1         136 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  215 (277)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             ccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc
Confidence            566677788999988887654   34555544322        23445667999999999999999999755 5688899


Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230        471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD  534 (553)
Q Consensus       471 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  534 (553)
                      .++..|.||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+++|+.++|++|++
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~----~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA----TDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS----SSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999887    89999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-32  Score=248.33  Aligned_cols=204  Identities=28%  Similarity=0.358  Sum_probs=152.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q psy11230        346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMS  424 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  424 (553)
                      .|+|+.|+..|+.++|++|+++|++++..+..|+||||+|+..|+.+++ .|++++.+....+..+.+||+.++..++.+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~  120 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccc
Confidence            3566666666666666666666666666666666666666666666655 455566666555566666666666666666


Q ss_pred             HHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh---------------------------cCCCCCCCCCCCC
Q psy11230        425 ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK---------------------------FKANVNSSDQFGR  477 (553)
Q Consensus       425 ~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~---------------------------~g~~~~~~~~~~~  477 (553)
                      ++++|+++|...+..+..+.+++++|+..++.++++.++.                           ...+....+..|.
T Consensus       121 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             hhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence            6666666666666666666666666666666665555553                           2334456778899


Q ss_pred             cHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       478 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |||++|+..++.+++++|+++|++++..+.    .|.||||+|++.|+.++|++|+++|++++.+|.+|+||||+|
T Consensus       201 t~L~~a~~~~~~~~~~~Ll~~g~din~~~~----~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         201 TALHVAAAKGYTEVLKLLIQARYDVNIKDY----DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             ChhhHHHHcCChhhhcccccceeccccccc----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999998877    899999999999999999999999999999999999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=239.04  Aligned_cols=218  Identities=26%  Similarity=0.331  Sum_probs=181.9

Q ss_pred             chHHHHHhccccChHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc---cCCCCCcHHHHHHH
Q psy11230        312 APLHLVVQRKSWNTTMFKTLLY-HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQ  387 (553)
Q Consensus       312 ~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~---~~~~~~~~l~~a~~  387 (553)
                      +|||+|+..+..  ++++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+++++++.
T Consensus         2 ~pLh~A~~~g~~--~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           2 YPLHQACMENEF--FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CHHHHHHHHTCH--HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HhHHHHHHcCCH--HHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            344444444432  44443333 3456677888999999999999999999999999988764   45678899999999


Q ss_pred             cCCchHH-HHHHcCCC--CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q psy11230        388 NGYVAIP-NLIRHGAN--VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK  464 (553)
Q Consensus       388 ~~~~~~~-~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~  464 (553)
                      .+..++. .++..+..  ....+..+.++++.++..++.+++++|++.|.+.+..+..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            9888877 44555554  34456678899999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        465 FK-ANVNSSDQFGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       465 ~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      ++ .+++.++..|+||||+|+.+++.+++++|++ .|++++..+.    .|.||||+|+.   .+++++|+++|+|
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~----~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN----KGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCT----TSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCC----CCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            87 5788999999999999999999999999997 5999999887    89999999985   4799999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3e-33  Score=252.33  Aligned_cols=234  Identities=26%  Similarity=0.289  Sum_probs=180.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhh
Q psy11230         10 KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASI   88 (553)
Q Consensus        10 ~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~   88 (553)
                      .+|.|||+.||..|+.++|++|++.|++++.. +.+|.||||+|+.+|+ ++|++|+++|++....+..+.+||++++..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            45679999999999999999999999999988 9999999999999999 999999999999999999999999999999


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHH-HHHHHhCCCCccc
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVA-VGILLRKGADINV  166 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~~-~~~l~~~~~~~~~  166 (553)
                        ++.++++.|+++|...+..+..+.+|+++|+..+..++++.++.. +.++.........+.... ...+.........
T Consensus       117 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         117 --GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             --TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             --cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence              999999999999999999999999999999999999999999964 333322222222222222 2334444444555


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHH
Q psy11230        167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTAL  246 (553)
Q Consensus       167 ~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l  246 (553)
                      .+..+.|||+.|+..|+.++++.|++.|++++.     ....+.+||+.|+..|+.++|++|+++|++++.+|..|.|||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~-----~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-----KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccc-----cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            566677777777777777777777766666543     133455666666666666666666666666666666666666


Q ss_pred             HHHHH
Q psy11230        247 DIAVE  251 (553)
Q Consensus       247 ~~A~~  251 (553)
                      ++|++
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            66643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=231.79  Aligned_cols=204  Identities=25%  Similarity=0.318  Sum_probs=186.1

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCC---CCCCCChHHHHHHhc
Q psy11230        346 KTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNA---RNKYAKTPLHIAVEQ  420 (553)
Q Consensus       346 ~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~---~~~~~~~~l~~a~~~  420 (553)
                      .+|||+|+..|+.+.++.|++. +..++.++.+|+||||+|+..|+.+++ .|+++|++++.   .+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            3799999999999999998874 678889999999999999999999988 66688888764   466789999999999


Q ss_pred             CCHHHHHHHHhCCCCc--cccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q psy11230        421 KNMSALNYLLEHGAQV--DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN  498 (553)
Q Consensus       421 ~~~~~~~~Ll~~g~~~--~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  498 (553)
                      +..++++.++..+...  ...+..+.++++.++..++.+++++|++.|.+.+..+..|+|||++|+..++.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            9999999999887654  44666789999999999999999999999999999999999999999999999999999999


Q ss_pred             c-CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh-cCCCCCCCCCCCCCCCCCC
Q psy11230        499 K-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD-YNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       499 g-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a  553 (553)
                      | .+++..+.    .|.||||+|+.+|+.++|++|++ .|++++.+|.+|.||||+|
T Consensus       161 ~~~~in~~d~----~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         161 GKSAVNWQDK----QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             TCCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             cccccccccc----ccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            7 57787766    89999999999999999999997 5999999999999999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.2e-30  Score=221.03  Aligned_cols=204  Identities=29%  Similarity=0.344  Sum_probs=186.3

Q ss_pred             hHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHc--CC
Q psy11230        325 TTMFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRH--GA  401 (553)
Q Consensus       325 ~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~--~~  401 (553)
                      .+++++|+++|++++. .|.+|.||||+|+..|+.+++++|++.|++++..+..+.++++.++..+..........  ..
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            3899999999999987 58899999999999999999999999999999999999999999999988876644433  22


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy11230        402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH  481 (553)
Q Consensus       402 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~  481 (553)
                      ........+.++.+.+.........+.|.+.+++++..+..|+||+++++..+..++++.+++++.+++..+..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            23334556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230        482 LAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL  532 (553)
Q Consensus       482 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L  532 (553)
                      +|+..|+.+++++|+++|+|++..+.    .|.||||+|+++|+.++|++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~----~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDH----MDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999998877    899999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=222.18  Aligned_cols=191  Identities=30%  Similarity=0.382  Sum_probs=153.1

Q ss_pred             CCCCHHHHHHHcCCH----HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHH
Q psy11230        344 ENKTPLHIAIESQCW----DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAV  418 (553)
Q Consensus       344 ~~~t~l~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~  418 (553)
                      +|.||||+|+..|+.    ++++++...|++++..+..|+||||+|+..++.+++ .++..|++++..+..|.+||+.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            467888888888875    345556667778888888888888888888888877 455778888888888888888888


Q ss_pred             hcCCHHHHHHHHhCCCCc------cccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCHHH
Q psy11230        419 EQKNMSALNYLLEHGAQV------DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       419 ~~~~~~~~~~Ll~~g~~~------~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A~~~~~~~~  491 (553)
                      ..++.+++++|++.+...      ......|.||++.|+..++.+++++|++.|..++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            888888888888876543      2334457899999999999999999999988887654 568999999999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       492 ~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      +++|+++|+|++..+.    .|.||||+|++.++.+++++|++.+.+
T Consensus       161 v~~Ll~~gad~~~~~~----~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         161 VSLLLKCGADVNRVTY----QGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHTTTCCSCCCCT----TCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHhcCCcccccCC----CCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999998877    899999999999999999999988764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-30  Score=219.49  Aligned_cols=174  Identities=29%  Similarity=0.356  Sum_probs=155.8

Q ss_pred             CCCcHHHHHHHcCCchHH-----HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHH
Q psy11230        377 QGQMPLHIAVQNGYVAIP-----NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAV  451 (553)
Q Consensus       377 ~~~~~l~~a~~~~~~~~~-----~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~  451 (553)
                      +|.||||+|+..|..+++     .+...+.+++.++.+|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999986433     466789999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230        452 EMHNLSIVEQLLKFKANVN------SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN  525 (553)
Q Consensus       452 ~~~~~~~v~~L~~~g~~~~------~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~  525 (553)
                      ..++.++++.|++.+....      .....|.||++.|+..++.+++++|+..|+.++.....   .|.||||+|+..|+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~---~G~T~L~~A~~~g~  157 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC---NGRTALHLAVDLQN  157 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---TCCCHHHHHHHTTC
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc---CCCCcccccccccc
Confidence            9999999999999876532      34456889999999999999999999999998877653   69999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        526 EAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       526 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      .++|++|+++|+|++.+|.+|.||||+|
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHHH
Confidence            9999999999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-28  Score=209.19  Aligned_cols=206  Identities=29%  Similarity=0.403  Sum_probs=127.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHH
Q psy11230        344 ENKTPLHIAIESQCWDAVSLLVK----HGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAV  418 (553)
Q Consensus       344 ~~~t~l~~a~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~  418 (553)
                      +|.||||+|+..|+.+++++|++    .|++++.++..|+||||+|+..|+.+++ .|+++|++.+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            45666666666666666665553    5666666666666666666666666655 455666666666666666666666


Q ss_pred             hcCCHHHHHHHHhCCC----CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHhCCHHHHH
Q psy11230        419 EQKNMSALNYLLEHGA----QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN-SSDQFGRTVLHLAVKIQNVAILE  493 (553)
Q Consensus       419 ~~~~~~~~~~Ll~~g~----~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~-~~~~~~~t~l~~A~~~~~~~~~~  493 (553)
                      ..++.++++.+.....    ..+.......++++.+.........+.|.....+.. .....+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            6666666665554221    122333445566666666666666666666554432 23445666666666666666666


Q ss_pred             HHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       494 ~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      +++++|.+++..+.    .|.||||+|+.+|+.++|++|+++|++++++|.+|+||||+|
T Consensus       162 ~~~~~~~~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         162 LLLQHGANVNAQMY----SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             HHHHTTCCTTCBCT----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             hhhhhccccccccc----cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            66666666666555    566666666666666666666666666666666666666665

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=211.52  Aligned_cols=215  Identities=28%  Similarity=0.394  Sum_probs=181.6

Q ss_pred             CCchHHHHHhccccChHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q psy11230        310 NKAPLHLVVQRKSWNTTMFKT----LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA  385 (553)
Q Consensus       310 ~~~~l~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  385 (553)
                      |.||||+|+..++.  ++++.    +.+.|.+++..|..|+||||+|+..|+.+++++|+++|++.+.....+.++++.|
T Consensus         3 G~TpLh~A~~~g~~--~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQGNL--PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTTCH--HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            44444444444433  33333    4468899999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCchHHHHH-HcC----CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCc-cccccCCCCHHHHHHHhCCHHHH
Q psy11230        386 VQNGYVAIPNLI-RHG----ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV-DARTQLGKDPLYIAVEMHNLSIV  459 (553)
Q Consensus       386 ~~~~~~~~~~ll-~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~A~~~~~~~~v  459 (553)
                      ...+...+.... ...    ...+.......++++.+.........+.|.....+. ......+.++++.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            999998877433 221    223344556789999999999999999999876654 34556789999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHH
Q psy11230        460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN  530 (553)
Q Consensus       460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~  530 (553)
                      ++++++|.+++.++..|.|||++|+.+|+.+++++|+++|+|++..+.    .|.||||+|+++|+.++|+
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~----~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC----HNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999999999999887    8999999999999999885

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.6e-32  Score=247.47  Aligned_cols=240  Identities=10%  Similarity=-0.016  Sum_probs=168.3

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccC--CC
Q psy11230          4 DVNATNKEGITLFQQAIVSSQTPIAKL---LAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVD--NL   77 (553)
Q Consensus         4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~--~~   77 (553)
                      +++.++.+|.|||++|+..|+.++|++   |++.|++++.. +.+|.||||+||.+|+ ++|++|++.|++++..+  ..
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            456788999999999999999887766   78999999988 8899999999999999 99999999999998875  46


Q ss_pred             CCcHHHHHHhhcCCChHHHHHHhhCCCCc---cCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy11230         78 GNTVLHTVASIKTRDPTAVEILKTNRANV---NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV  154 (553)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~  154 (553)
                      |+||||+|+..  |+.++|++|++.|.+.   +..+..+.||++.|+.+|+.++|++|++.|++++..+....++.    
T Consensus       161 g~t~L~~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~----  234 (346)
T d2ajaa1         161 NYHAFRLAAEN--GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG----  234 (346)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTT----
T ss_pred             CCChhHHHHHH--hhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcC----
Confidence            89999999998  9999999999998765   33445577888999999999999999999887654332222211    


Q ss_pred             HHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhcc----ccccCCchhhHHHHHcCCHHHHHHHHH
Q psy11230        155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCH----ENVKHGGQLLLHLVRNGHQNAVKLILE  230 (553)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~----~~~~~~~~~l~~a~~~g~~~~v~~Ll~  230 (553)
                                    ....+++..+...+..+....+.............    .......++++.++..|..+++++|++
T Consensus       235 --------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~  300 (346)
T d2ajaa1         235 --------------EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS  300 (346)
T ss_dssp             --------------TTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred             --------------cHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh
Confidence                          11123333333333333322222211111000000    000111245666777888888999888


Q ss_pred             cCCC-----CcCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy11230        231 KGAN-----VHAKDQLCKTALDIAVEHGHLKIVEFLLDH  264 (553)
Q Consensus       231 ~~~~-----~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~  264 (553)
                      .+..     ....+.+|.||||+|++.|+.++|++|++.
T Consensus       301 ~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            7643     233445678899999999999999988864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=8.7e-27  Score=198.44  Aligned_cols=187  Identities=29%  Similarity=0.388  Sum_probs=157.2

Q ss_pred             CCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHH
Q psy11230        307 GPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIA  385 (553)
Q Consensus       307 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a  385 (553)
                      +..|.||||+|+..++.  +++++|++.|.+++..+..+.++++.++..++............. .......+.++.+.+
T Consensus        20 d~~G~t~L~~A~~~g~~--e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          20 DKTGETSLHLAARFARA--DAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHCCCHHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCH--HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45566666666666654  677777777778888888888999999988888877766655333 333445677888888


Q ss_pred             HHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q psy11230        386 VQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK  464 (553)
Q Consensus       386 ~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~  464 (553)
                      .......+. .+...+.+++.++..|+|||+.++.++..++++.+++.+.+++..+..|.||||+|+..|+.+++++|++
T Consensus        98 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  177 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD  177 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHH
Confidence            888877777 5678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy11230        465 FKANVNSSDQFGRTVLHLAVKIQNVAILECL  495 (553)
Q Consensus       465 ~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  495 (553)
                      +|++++.+|..|+||||+|+++|+.++|++|
T Consensus       178 ~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         178 NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.6e-27  Score=188.32  Aligned_cols=151  Identities=28%  Similarity=0.341  Sum_probs=104.9

Q ss_pred             HHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHH
Q psy11230        381 PLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV  459 (553)
Q Consensus       381 ~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v  459 (553)
                      +||.|+..|+.+++ .|+++|++++.++..|+||||+|+ .++.+++++|+++|++++..+..+.++++.++..++.+++
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~   82 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccc
Confidence            33333333333333 222334444444555666666554 5677777777777777777777777888888888888888


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230        460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN  536 (553)
Q Consensus       460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  536 (553)
                      ++|++++.+++..+..|.+|+++|+..++.+++++|+++|+ +++..+.    .|.||||+|++.|+.++|++|+++|
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~----~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          83 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH----KGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCC----CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88887777777777777888888888888888888777775 5666555    6778888888888888888888776

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=186.08  Aligned_cols=152  Identities=25%  Similarity=0.317  Sum_probs=143.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSA  425 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  425 (553)
                      ++||+|+..|+.+++++|+++|++++.++..|+||||+|+ .++.++. .+++.+++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6899999999999999999999999999999999999886 6777777 7789999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Q psy11230        426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKA-NVNSSDQFGRTVLHLAVKIQNVAILECLLVNK  499 (553)
Q Consensus       426 ~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~-~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g  499 (553)
                      +++|++.+.+++..+..|.+|+++|+..++.+++++|++++. +++.++..|.||||+|+..++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999986 78899999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=184.89  Aligned_cols=152  Identities=18%  Similarity=0.232  Sum_probs=136.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCC
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTR   91 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (553)
                      .+.|+.||..|+.++|++|++. +++++.. +..|.||||+|+..+.+++++|++.+.+++..+..|.+|++.++..  +
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~--~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART--G   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--T
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccccccccccccccccccccccccccccccccccccc--c
Confidence            4569999999999999999985 7888887 8999999999986444999999999999999999999999999998  9


Q ss_pred             ChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCC
Q psy11230         92 DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG  171 (553)
Q Consensus        92 ~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~  171 (553)
                      +.++++++++.|++++.++..|+||||+|+..|+.+++++|+ .|++++.+                         +..|
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~-------------------------d~~G  133 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR-------------------------DARG  133 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCC-------------------------CTTS
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-cccccccc-------------------------CCCC
Confidence            999999999999999999999999999999999999999887 56666544                         4556


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHc
Q psy11230        172 KTAFQMAYEMKNFPAIELFLKY  193 (553)
Q Consensus       172 ~~~l~~A~~~g~~~~~~~Ll~~  193 (553)
                      .|||++|+..|+.+++++|+++
T Consensus       134 ~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhh
Confidence            7788899999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=184.67  Aligned_cols=130  Identities=25%  Similarity=0.373  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11230        400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTV  479 (553)
Q Consensus       400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~  479 (553)
                      +.+++..+..|+||||+|+ .++.+++++|++++.+++..+..|.+|++.++..++.+++++++++|++++.++..|.||
T Consensus        26 ~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~  104 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCee
Confidence            3444455555566666554 356666666666666666666666677777777777777777777776666666667777


Q ss_pred             HHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        480 LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       480 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      ||+|+..|+.+++++|+ .|++++..+.    .|.||||+|++.|+.+++++|+++
T Consensus       105 L~~A~~~~~~~i~~~L~-~~~~~~~~d~----~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         105 IHLAVQEGHTAVVSFLA-AESDLHRRDA----RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTCHHHHHHHH-TTSCTTCCCT----TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ecccccccccccccccc-ccccccccCC----CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            77777777777776665 4566666555    666777777777777777777664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7e-26  Score=181.94  Aligned_cols=150  Identities=29%  Similarity=0.306  Sum_probs=137.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcC
Q psy11230         12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKT   90 (553)
Q Consensus        12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~   90 (553)
                      +.|||+.||+.|+.++|++|++.|++++ . +..|.||||+|+..++ ++++.++.........+..+.++++.++..  
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE--   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-c-ccCCCcccccccccccccccccccccccccccccccccccccccccc--
Confidence            3599999999999999999999999876 4 8899999999999999 999999999888888888999999999998  


Q ss_pred             CChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCC
Q psy11230         91 RDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNF  170 (553)
Q Consensus        91 ~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~  170 (553)
                      .+.++++++.+.|++.+.++..|+||||+|+..|+.++|++|+++|++++.++                         ..
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d-------------------------~~  132 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS-------------------------KF  132 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------------------TT
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC-------------------------CC
Confidence            99999999999999999999999999999999999999999999998877555                         45


Q ss_pred             CCCHHHHHHHcCCHHHHHHH
Q psy11230        171 GKTAFQMAYEMKNFPAIELF  190 (553)
Q Consensus       171 ~~~~l~~A~~~g~~~~~~~L  190 (553)
                      |.|||++|+..|+.+++++|
T Consensus       133 g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHhC
Confidence            56778899999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.4e-26  Score=173.66  Aligned_cols=106  Identities=32%  Similarity=0.358  Sum_probs=87.6

Q ss_pred             CCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhh
Q psy11230        444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES  523 (553)
Q Consensus       444 ~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~  523 (553)
                      .|||++|++.|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+.    .|.||||+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~----~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS----SCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeeccc----ccccchhhhhhc
Confidence            3678888888888888888888888888888888888888888888888888888888887766    788888888888


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        524 NNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       524 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                      |+.++|++|+++|++++.+|.+|.||||+|
T Consensus        79 ~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          79 GHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             CchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            888888888888888888888888888876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=175.60  Aligned_cols=120  Identities=21%  Similarity=0.278  Sum_probs=112.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCC-cHHHHHHhh
Q psy11230         11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGN-TVLHTVASI   88 (553)
Q Consensus        11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~-t~l~~a~~~   88 (553)
                      .+.++||.|+..|+.++|++|++.|++++.+ +..|.||+|+|+ .|+ +++++|+++|++++..+..+. ||||+|+..
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccc-cccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4678999999999999999999999999988 899999999776 566 999999999999999998876 699999999


Q ss_pred             cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy11230         89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID  134 (553)
Q Consensus        89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  134 (553)
                        ++.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        80 --g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 --GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence              99999999999999999999999999999999999999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.2e-25  Score=176.75  Aligned_cols=149  Identities=30%  Similarity=0.401  Sum_probs=96.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHH
Q psy11230        347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL  426 (553)
Q Consensus       347 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  426 (553)
                      |||+.|++.|+.+++++|+++|++++ .                                +..|+||||+|+..++.+++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~--------------------------------~~~g~t~L~~a~~~~~~~~~   50 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-T--------------------------------DWLGTSPLHLAAQYGHFSTT   50 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-C--------------------------------CTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-c--------------------------------ccCCCccccccccccccccc
Confidence            66777777777777777776666544 2                                34455666666666666666


Q ss_pred             HHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccccc
Q psy11230        427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI  506 (553)
Q Consensus       427 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  506 (553)
                      +.++............+.++++.++...+.++++++.++|++++.++..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d  130 (153)
T d1awcb_          51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC
Confidence            66666555555555556666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             ccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230        507 ISGIWKGYTPLHLAVESNNEAVINKL  532 (553)
Q Consensus       507 ~~~~~~~~t~l~~A~~~~~~~~v~~L  532 (553)
                      .    .|.||||+|+.+|+.+++++|
T Consensus       131 ~----~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         131 K----FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T----TSCCHHHHHHHTTCHHHHHHH
T ss_pred             C----CCCCHHHHHHHcCCHHHHHhC
Confidence            5    566666666666666666654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-26  Score=173.10  Aligned_cols=121  Identities=24%  Similarity=0.251  Sum_probs=113.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHhCC
Q psy11230        410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR-TVLHLAVKIQN  488 (553)
Q Consensus       410 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~-t~l~~A~~~~~  488 (553)
                      +.++||.|+.+|+.+++++|+++|++++..+..|.||+|.|+ .|+.+++++|+++|++++.++..+. +|||+|+++|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999999999999999999999999775 7999999999999999999988776 69999999999


Q ss_pred             HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230        489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY  535 (553)
Q Consensus       489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  535 (553)
                      .+++++|+++|++++..+.    .|.||||+|+++|+.+++++|++.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~----~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDA----WGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccC----CCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999887    899999999999999999999863

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.3e-26  Score=173.72  Aligned_cols=105  Identities=24%  Similarity=0.276  Sum_probs=92.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCC
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTR   91 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (553)
                      .|||++|++.|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++.+|..|+||||+|+..  +
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~--~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE--G   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTT--T
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccc-cccccccccccccccccccccccccccceeeecccccccchhhhhhc--C
Confidence            47889999999999999999998888887 7888899999988888 888999999888888888889999988888  8


Q ss_pred             ChHHHHHHhhCCCCccCCCCCCCcHHHHH
Q psy11230         92 DPTAVEILKTNRANVNIKNKEGDTPLHIA  120 (553)
Q Consensus        92 ~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A  120 (553)
                      +.+++++|+++|++++.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88899999998888888888899998887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=171.33  Aligned_cols=123  Identities=22%  Similarity=0.170  Sum_probs=113.7

Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy11230        412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI  491 (553)
Q Consensus       412 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~  491 (553)
                      ++|+.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCcHHHHH--HhhCCHHHHHHHHhcCC
Q psy11230        492 LECLLVNKADINAKIISGIWKGYTPLHLA--VESNNEAVINKLLDYNP  537 (553)
Q Consensus       492 ~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~v~~Ll~~g~  537 (553)
                      +++|+++|++++..+..   .+.||++.|  .+.|+.+++++|++.+.
T Consensus        83 v~~Ll~~ga~v~~~~~~---~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYS---DMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCCTTCCCSS---SCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCC---CCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            99999999999987653   577887655  67799999999997643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=4.8e-27  Score=214.52  Aligned_cols=230  Identities=13%  Similarity=0.052  Sum_probs=165.4

Q ss_pred             cCCCCCchHHHHHhccccC-hHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC--CCCCcHH
Q psy11230        306 KGPTNKAPLHLVVQRKSWN-TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID--NQGQMPL  382 (553)
Q Consensus       306 ~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~~l  382 (553)
                      ++..+.|||++|+..++.+ .++++.|++.|++++..+..|+||||+|+.+|+.++|++|++.|++++..+  .+|+|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            3566788888888888651 133445788999999999999999999999999999999999999988765  4589999


Q ss_pred             HHHHHcCCchHH-HHHHcCCCCC---CCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCC-------CHHHHHH
Q psy11230        383 HIAVQNGYVAIP-NLIRHGANVN---ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGK-------DPLYIAV  451 (553)
Q Consensus       383 ~~a~~~~~~~~~-~ll~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-------t~l~~A~  451 (553)
                      |+|+.+|+.+++ .|++.|.+..   ..+..+.||++.|+.+|+.+++++|+++|++++..+..+.       ++++.+.
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH  245 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHh
Confidence            999999999999 5556665542   2334566888889999999999999999887765433322       3444444


Q ss_pred             HhCCHHHHHHHHhcCCC--CCCCCC-------CCCcHHHHHHHhCCHHHHHHHHhccCCcccccc-cccCCCCcHHHHHH
Q psy11230        452 EMHNLSIVEQLLKFKAN--VNSSDQ-------FGRTVLHLAVKIQNVAILECLLVNKADINAKII-SGIWKGYTPLHLAV  521 (553)
Q Consensus       452 ~~~~~~~v~~L~~~g~~--~~~~~~-------~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~~~~~t~l~~A~  521 (553)
                      ..+..++...+.....+  .+..+.       .+.++++.|+..+..+++++|++.+........ .....|.||||+|+
T Consensus       246 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~  325 (346)
T d2ajaa1         246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL  325 (346)
T ss_dssp             HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             hccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHH
Confidence            44444444433332221  222222       134678888889999999999998764332221 11226889999999


Q ss_pred             hhCCHHHHHHHHhc
Q psy11230        522 ESNNEAVINKLLDY  535 (553)
Q Consensus       522 ~~~~~~~v~~Ll~~  535 (553)
                      +.|+.++|++|++.
T Consensus       326 ~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         326 RLGNQGACALLLSI  339 (346)
T ss_dssp             HHTCTTHHHHHTTS
T ss_pred             HcCcHHHHHHHhCC
Confidence            99999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.7e-25  Score=196.08  Aligned_cols=148  Identities=25%  Similarity=0.330  Sum_probs=121.4

Q ss_pred             CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH--------HHHHHHHHcCCCCc
Q psy11230          2 DADVNAT-NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI--------RLVRLLLEYNVDVN   72 (553)
Q Consensus         2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~--------~~v~~Ll~~~~~~~   72 (553)
                      ++|+|.+ |.+|+||||+||..|+.++|++|++.|++++.+ +..|+||||.|+..++        ++++++.   ..+.
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            5688876 999999999999999999999999999999988 8899999999998764        3444443   3567


Q ss_pred             ccCCCCCcHHHHHHhhcC--CChHH--------HHHHhhCCCC-------------------------------------
Q psy11230         73 AVDNLGNTVLHTVASIKT--RDPTA--------VEILKTNRAN-------------------------------------  105 (553)
Q Consensus        73 ~~~~~~~t~l~~a~~~~~--~~~~~--------~~~Ll~~~~~-------------------------------------  105 (553)
                      ..|..|+||||+++....  +...+        +.++.+.+..                                     
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            778999999998876522  22222        2333333222                                     


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230        106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA  153 (553)
Q Consensus       106 ~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~  153 (553)
                      +|.+|..|+||||+|++.|+.++|++|+++|++++.++..|.|||++|
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            678899999999999999999999999999999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-25  Score=168.39  Aligned_cols=119  Identities=22%  Similarity=0.272  Sum_probs=111.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCC
Q psy11230         14 TLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD   92 (553)
Q Consensus        14 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (553)
                      ++|+.||..|+.++|++|++.|++++.+ +.+|.||||+|+..|+ +++++|++.|++++..|..|+||||+|+..  ++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~--g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccc-ccccccccccccccccccccccccccccccccccccCcccccccchh--hH
Confidence            6899999999999999999999999988 8899999999999999 999999999999999999999999999998  99


Q ss_pred             hHHHHHHhhCCCCccCCCC-CCCcHHHHH--HHcCCHHHHHHHHhc
Q psy11230         93 PTAVEILKTNRANVNIKNK-EGDTPLHIA--ARTGNYKMVRVLIDH  135 (553)
Q Consensus        93 ~~~~~~Ll~~~~~~~~~~~-~~~t~L~~A--~~~g~~~iv~~Ll~~  135 (553)
                      .+++++|+++|++++..+. .+.||++++  +..|+.+++++|++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999997764 588887665  678899999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-24  Score=194.30  Aligned_cols=178  Identities=21%  Similarity=0.271  Sum_probs=109.4

Q ss_pred             CCCCcccc-CCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCC-------HHHHHHHHhCCCCcc
Q psy11230        367 HGADVNVI-DNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKN-------MSALNYLLEHGAQVD  437 (553)
Q Consensus       367 ~~~~~~~~-~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~Ll~~g~~~~  437 (553)
                      .+.+++.. |..|+||||+|+..|+.+++ .|+++|++++.++..|+||||.|+..++       .++++++..   .+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhh
Confidence            45566644 67777777777777777776 5667777777777777777777776543       134444432   345


Q ss_pred             ccccCCCCHHHHHHHhCC----HH--------HHHHHHhcCCCC-CCCCCCCCcHHHHHHHhCCHHHH-----HHHHhcc
Q psy11230        438 ARTQLGKDPLYIAVEMHN----LS--------IVEQLLKFKANV-NSSDQFGRTVLHLAVKIQNVAIL-----ECLLVNK  499 (553)
Q Consensus       438 ~~~~~~~t~l~~A~~~~~----~~--------~v~~L~~~g~~~-~~~~~~~~t~l~~A~~~~~~~~~-----~~Ll~~g  499 (553)
                      ..+..|+||||+++..+.    ..        +++++.+.+... ......+.++++.+........+     .+++.. 
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  250 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-  250 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH-
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc-
Confidence            566677777777765443    11        333444443322 22223333444443333322222     222222 


Q ss_pred             CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230        500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS  553 (553)
Q Consensus       500 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  553 (553)
                       .+|.++.    .|+||||+|++.|+.++|++|+++||+++++|.+|.||||+|
T Consensus       251 -~in~~D~----~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         251 -MLNAQDS----NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             -TTTCCCT----TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             -CccCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence             2556655    899999999999999999999999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2e-22  Score=158.54  Aligned_cols=122  Identities=25%  Similarity=0.299  Sum_probs=105.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCcccc------ccCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230        413 PLHIAVEQKNMSALNYLLEHGAQVDAR------TQLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVLHLA  483 (553)
Q Consensus       413 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~------~~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A  483 (553)
                      .|..|++.+++..+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|++++.++..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            456788888888888888888776554      56788999999975   678999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230        484 VKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD  538 (553)
Q Consensus       484 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  538 (553)
                      +..|+.+++++|+++|++++..+.    .|.||||+|+++|+.+++++|++.++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~----~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANE----SGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccCccccccCC----CCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999998877    899999999999999999999988764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-22  Score=159.89  Aligned_cols=125  Identities=18%  Similarity=0.303  Sum_probs=113.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----CCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230         13 ITLFQQAIVSSQTPIAKLLAERGANINDPF-----PDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLGNTVLH   83 (553)
Q Consensus        13 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~~t~l~   83 (553)
                      ...|..|++.+++..|+.++..|.+++.+.     +..|+||||+|++.   +. ++|++|+++|++++.+|..|+||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            346789999999999999999998876542     56789999999974   56 9999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy11230         84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT  139 (553)
Q Consensus        84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~  139 (553)
                      +|+..  ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus        87 ~A~~~--~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccc--ccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99998  9999999999999999999999999999999999999999999976653