Psyllid ID: psy11302

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----

MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNYQSSESSSKENIQPNGPACKPNINTENASSSGNNTEPEDFVDLKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAEDEDHMSTEPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAKEASKANLKRKVSSETLGESKVKKSKQVYTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR

cEEEEEEcccccEEEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEEccccccccEEEEEEEEccccccccccccccHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEcccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccEEEccEEEEEEEEEEEcccccEEEEEEEEEccccccccccccccHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccHHHHHHHHHHcccccccc

cEEEEEEcccccEEEEEHcHHcHHHHHHHHHHHHccccccccEEEEEccccccccEEEEccccccHEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHcccccccEEEcccEccHcccccHHEEEEEEEEEcccccccccccccEEEEEEEcccccccEEEEccccccHHHHHHHHcHHHcccccEEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEEEccccccccccccEEEEEcHEEEEcccccccccccccccccccccHHHccccccHHHccccccccccccEEEEEcccccccccEEEccccccEEEEcccccccccccccccccccccccccHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHccccEEEEccccccccccccccccEEEEEEEEEEccccccccccccccccccEEEEEEEcccccccccccEEEEEcccccccccccccccccHccHHHHHHHHHHHHcccccccccccccHHHHccccEEEEEccccccccccccccEEEEccEEEEEEccccccccccEEEEEEEEEcccccccccccHHHHHcccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHcccccccc

myvkirsldgskncVLVLSKRTLISDMKTQIentldvpvdkqrlfykgkqledeYMLFDYNVNLNDVIQLMIKADIdknyqssessskeniqpngpackpnintenasssgnntepedfvdlkpadsqyykvgDYVDAILETEGAWFESQITHILVDinkekpydeddlIFKVVHLKykddgsstmkfddirplpkHLITEFNENLIGVRvmgnynaeeprergywhDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYkiespkllaertaededhmstepktlrqivpecttcndvetkhckdcgcsicagktspdklivceecqhyyhiwclkpplesvpeddewfcpsckrdtseviapgqklkdskkkarmastnskstrdwgkgmacvgrtkvctivpsdhfgpipgievgQSYLYRFqaseagvhrphvsgihgredVGAFSLVLsggyeddvddgdsflytgsggrdlsgnkrtsvQSFDQTLTRMNKALARncnapiddkrgneavdwkkgkpvrvmrnfhgakhskyapkegnrydgiYKVVKyypvkgssdFIVWRFHlqrddeapapwteeGKKRIKDLGlqmiypegYEEAQAAKEASKANLKRKvssetlgeskvkkskqvytlpssvlehinndtvhsNVWDEIKALCKEGQKEVLEHIQEKFLCIICQelvykpitldcvHTFCHDCLKRAFKIesdacnscpycrkemnksclethSNDALQSILStlfpgyssar

myvkirsldgskncvLVLSKRtlisdmktqientldvpvdkqRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNYQSSessskeniqpngpACKPNINTENASSSGNNTEPEDFVDLKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKykddgsstmkfddirPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKkqgkrlttelIATVFigkkgletrlencKIKFvkelykiespkllaertaededhmstepktlrqivpeCTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCkrdtseviapgqklkdskkkarmastnskstrdwgkgmacVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTgsggrdlsgnkrtSVQSFDQTLTRMNKALArncnapiddkrgneavdwkkgkpvrvmrnfhgakhskyapkegnrydGIYKVVKYYPVKGSSDFIVWRFHLQRddeapapwteegkkRIKDLGLQMIYPEGYEEAQAAKEASkanlkrkvssetlgeskvkkskqvytlpssvlehinndtVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSIlstlfpgyssar

MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNYQSSESSSKENIQPNGPACKPNINTENASSSGNNTEPEDFVDLKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAEDEDHMSTEPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYeeaqaakeaskaNLKRKVSSETLGESKVKKSKQVYTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR

********DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI*************************************************DSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIES*********************LRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSC*********************************WGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYT**********************************************DWK***PVRVMRNFHGAK**KYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRD**************IKDLGLQMIY*************************************VYTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETH***ALQSILSTL********

*YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI*****************************************************DSQYYKVGDYVDAILETEGAWFESQITHILVDI*******EDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEK**********************TRLENCKIKFVKELYKIE**************************************KHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGS************************KA*A****A******GNEAVDWKKGKPVRVMRNFHG*****YAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMI***************************************************************************EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYS***

MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK***************NGPACKPNINTEN*********PEDFVDLKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAE************PKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPG***********************GKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEE******************************QVYTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR

MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD**********************************************LKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPK**********************IVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMAS****STRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNK****QSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAKEASKAN*************KVKKSKQVYTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYS***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		764	2.2.26 [Sep-21-2011]
B6CHA3		772	E3 ubiquitin-protein liga	N/A	N/A	0.968	0.958	0.458	0.0
Q96T88		793	E3 ubiquitin-protein liga	yes	N/A	0.971	0.935	0.440	0.0
A7E320		786	E3 ubiquitin-protein liga	yes	N/A	0.972	0.945	0.467	0.0
F6UA42		775	E3 ubiquitin-protein liga	yes	N/A	0.960	0.947	0.452	0.0
Q8VDF2		782	E3 ubiquitin-protein liga	yes	N/A	0.981	0.959	0.454	0.0
E7EZF3		776	E3 ubiquitin-protein liga	yes	N/A	0.976	0.961	0.452	0.0
Q7TPK1		774	E3 ubiquitin-protein liga	yes	N/A	0.976	0.963	0.452	0.0
Q7TMI3		803	E3 ubiquitin-protein liga	no	N/A	0.972	0.925	0.417	0.0
Q96PU4		802	E3 ubiquitin-protein liga	no	N/A	0.971	0.925	0.421	0.0
Q8VYZ0		645	E3 ubiquitin-protein liga	yes	N/A	0.359	0.426	0.362	6e-44

>sp\|B6CHA3\|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2 SV=1	Back alignment and function desciption

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/796 (45%), Positives = 495/796 (62%), Gaps = 56/796 (7%)

Query: 1   MYVKIRSLDGSKNCVL-VLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFD 59
           M++++R++DG     +  LSK T + D++ +I+    V ++ QRLFY+GKQ+E+ + LFD
Sbjct: 1   MWIQVRTMDGRDTRRIDSLSKLTKVDDLRDRIQQLFGVALESQRLFYRGKQMENGHTLFD 60

Query: 60  YNVNLNDVIQLMIKADIDKNYQSSESSSKENIQPNGPACKPNINTENASSSGNNTEPEDF 119
           Y+V LND++QL+++   D    S  +  KE    +  A   +   ++ S SG      D 
Sbjct: 61  YSVGLNDIVQLLVRQIPD----SFPTKHKECELSDASAGCGSGQRDSDSGSGEGAMDVDG 116

Query: 120 VDL----KPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYD---------- 165
             +    +   +  YK  D VDA     GAWFE+QI ++     K  PY           
Sbjct: 117 QSISIIGENVGTSLYKKNDLVDARDLNMGAWFEAQIVNV---SKKVGPYGTLPEVSDTSV 173

Query: 166 -EDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERG 224
             D +I+ V +  Y ++G   +   D+R L       ++E  +G  VM NYN +EP+ERG
Sbjct: 174 TSDAIIYHVKYEDYPENGVVQLTCKDVR-LRARTTLPWHEIKVGQVVMVNYNPDEPKERG 232

Query: 225 YWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAE 284
           YW+D  I +K   +   E+ A V +G  G    L +C+I+FV E+YKIE P         
Sbjct: 233 YWYDAEILRKHESKKIKEIYAKVLLGDAG--DSLNDCRIRFVNEIYKIEEP--------- 281

Query: 285 DEDHMSTEPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIW 344
              +++TE    RQ  PEC  C D   + C+ C C IC GK  P+K ++C+EC   +HI+
Sbjct: 282 GSTYLNTESPQKRQNGPECKHCKDNPKRACRMCACCICGGKQDPEKQLLCDECDLAFHIY 341

Query: 345 CLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMAC 404
           CLKPPL  +P+D++W+CP C+ D SEV+  G+KLK+SKKKARMAS NS S RDWGKGMAC
Sbjct: 342 CLKPPLSVIPQDEDWYCPDCRNDASEVVLAGEKLKESKKKARMASANSSSQRDWGKGMAC 401

Query: 405 VGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLS 464
           VGR++ CTIVPS+H+GPIPG+ VG  + +R Q SE+GVHRPHV+GIHGR + G++SLVL+
Sbjct: 402 VGRSRECTIVPSNHYGPIPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDGSYSLVLA 461

Query: 465 GGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNE 524
           GGYEDDVD+G+ F YTGSGGRDLSGNKRT+ QS DQ L+ MN+ALA NC+API+DK G+ 
Sbjct: 462 GGYEDDVDNGNEFTYTGSGGRDLSGNKRTAEQSCDQKLSNMNRALALNCSAPINDKEGSI 521

Query: 525 AVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRD 584
           A DW+ GKPVRV+RN  G KHSKYAP+EGNRYDGIYKVVKY+P KG S F+VWR+ L+RD
Sbjct: 522 AKDWRAGKPVRVVRNSKGRKHSKYAPEEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRD 581

Query: 585 DEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAKE--------------ASKANLKRKV 630
           D  PAPW++EGK+RIK LGL M YP+GY E  A+KE               SK   KR  
Sbjct: 582 DYEPAPWSKEGKERIKKLGLTMQYPDGYLETLASKEREKENKTEDEPIDSPSKGKRKRNS 641

Query: 631 SSETLGESKVKKSKQV--YTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEK 688
            +E      + K  +V  Y L       I  D +++ +W E+    KEG K V   ++E 
Sbjct: 642 DNEQTAAKSIPKKMKVASYKLTLEQKTLIKQDVLNAKLWSEVMLFLKEGPKFV-NKVEET 700

Query: 689 FLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDA 748
           FLCI CQE+VY+P+T +C H  C  CL R+FK      +SCP CR ++ K+    + N  
Sbjct: 701 FLCICCQEVVYEPVTTECHHNICKGCLDRSFKA---LVHSCPACRHDLGKN-YPLNVNKP 756

Query: 749 LQSILSTLFPGYSSAR 764
           LQ+ILS LFPGY S R
Sbjct: 757 LQAILSQLFPGYESGR 772

Multidomain protein that acts as a key epigenetic regulator by bridging DNA methylation and chromatin modification. Specifically recognizes and binds hemimethylated DNA at replication forks via its YDG domain and recruits dnmt1 methyltransferase to ensure faithful propagation of the DNA methylation patterns through DNA replication. In addition to its role in maintenance of DNA methylation, also plays a key role in chromatin modification: through its tudor-like regions and PHD-type zinc fingers, specifically recognizes and binds histone H3 trimethylated at 'Lys-9' (H3K9me3) and unmethylated at 'Arg-2' (H3R2me0), respectively, and recruits chromatin proteins. Enriched in pericentric heterochromatin where it recruits different chromatin modifiers required for this chromatin replication. Also localizes to euchromatic regions where it negatively regulates transcription possibly by impacting DNA methylation and histone modifications. Has E3 ubiquitin-protein ligase activity by mediating the ubiquitination of target proteins. However, it is still unclear how E3 ubiquitin-protein ligase activity is related to its role in chromatin in vivo.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q96T88\|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1	Back alignment and function description

>sp\|A7E320\|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1	Back alignment and function description

>sp\|F6UA42\|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1 PE=3 SV=2	Back alignment and function description

>sp\|Q8VDF2\|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1 SV=2	Back alignment and function description

>sp\|E7EZF3\|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TPK1\|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1 PE=2 SV=2	Back alignment and function description

>sp\|Q7TMI3\|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1 SV=1	Back alignment and function description

>sp\|Q96PU4\|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1 SV=1	Back alignment and function description

>sp\|Q8VYZ0\|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		764
380012022		737	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.952	0.987	0.490	0.0
340725067		739	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.955	0.987	0.476	0.0
334883192		737	E3 ubiquitin-protein ligase UHRF1 [Apis	0.952	0.987	0.481	0.0
350424739		741	PREDICTED: E3 ubiquitin-protein ligase U	0.955	0.985	0.469	0.0
209413707		772	E3 ubiquitin-protein ligase UHRF1 [Xenop	0.968	0.958	0.458	0.0
383848346		736	PREDICTED: E3 ubiquitin-protein ligase U	0.951	0.987	0.479	0.0
348550328		781	PREDICTED: E3 ubiquitin-protein ligase U	0.975	0.953	0.456	0.0
307165883		734	E3 ubiquitin-protein ligase UHRF1 [Campo	0.947	0.986	0.463	0.0
348550330		794	PREDICTED: E3 ubiquitin-protein ligase U	0.982	0.945	0.456	0.0
395831697		983	PREDICTED: E3 ubiquitin-protein ligase U	0.975	0.757	0.449	0.0

>gi\|380012022\|ref\|XP_003690089.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UHRF1-like [Apis florea]	Back alignment and taxonomy information

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/773 (49%), Positives = 487/773 (63%), Gaps = 45/773 (5%)

Query: 1   MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDY 60
           MYVK+R++DG +  +L +SK T + D K +IE  L +  D QRLF++GKQLE+ Y L+DY
Sbjct: 1   MYVKVRTMDGKQEAILTISKLTEVEDFKHEIEKELHIKADLQRLFFRGKQLENGYKLYDY 60

Query: 61  NVNLNDVIQLMIKADIDKNYQSSESSSKENIQPNGPACKPNINTENASSSGNNTEPEDFV 120
           NVNLNDVIQLM+K  I+     + SS+   I         N N E      +N E E   
Sbjct: 61  NVNLNDVIQLMVKVQINDIENKATSSNSVTIS--------NSNYEKEXIDNSNKEEE--- 109

Query: 121 DLKPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKD 180
            L  A+S YYKVGD VD + +T GAWFE+ I  I           ED +I+   +L+++ 
Sbjct: 110 -LVEAESLYYKVGDAVDCLDQTYGAWFEAIILKIF--------KKEDKVIY---NLQWEF 157

Query: 181 DGSS---TMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGK 237
           D  +    +    +RP  KHL+ +FN   IG  VM N+N + P+E G W+D  + K   K
Sbjct: 158 DEKAPPFNVPESSVRPRAKHLL-QFNSLKIGQNVMINHNVDNPKETGLWYDFTVSKIDKK 216

Query: 238 RLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAEDEDHMSTEPKTLR 297
           R   ELI T+ IG+  L   LEN K+    E++ IE PKLL +RT EDE HM +  K  R
Sbjct: 217 RRVQELIGTLHIGRDQL---LENHKVNPKGEIFAIEEPKLLKDRTPEDEQHMISNGKR-R 272

Query: 298 QIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDD 357
           ++   C  C D   K C++CGC ICAGK     L++C+EC   YH+ CL PPL S+PE+D
Sbjct: 273 RVQAICNACLDNPRKKCRECGCRICAGKEDEHNLLLCDECNSAYHLRCLNPPLSSIPEED 332

Query: 358 EWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMACVGRTKVCTIVPSD 417
            W+CP CK D +E++  G KLK +KKK    + NS S RDWGKGMACVGRTK C+IVP +
Sbjct: 333 YWYCPECKNDENEIVKAGDKLKQTKKKT---NENSNSKRDWGKGMACVGRTKECSIVPPN 389

Query: 418 HFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSF 477
           H GPIPG+EVG  ++YR Q SE GVHRPH++GIHGRE   A+S+VLSGGYEDD+D+GD F
Sbjct: 390 HRGPIPGVEVGMCWMYRVQVSEVGVHRPHIAGIHGRETDCAYSIVLSGGYEDDIDNGDEF 449

Query: 478 LYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVM 537
           +YTGSGGRDLSGNKRT+ QS DQTLTRMNKALA NCNA ++   G  A DW+ G PVRV+
Sbjct: 450 IYTGSGGRDLSGNKRTAEQSCDQTLTRMNKALAVNCNAKLNATVGATAEDWRGGIPVRVV 509

Query: 538 RNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKK 597
           RNF  AKHSKYAP+EGNRYDGIYKVVKYYP  G S F VWR+ L+RDD APAPWT EGK 
Sbjct: 510 RNFKLAKHSKYAPEEGNRYDGIYKVVKYYPDTGKSGFRVWRYLLRRDDPAPAPWTNEGKA 569

Query: 598 RIKDLGLQMIYPEGYEEAQAAKEASKANLKRKVSSETLGESKVK---KSKQ---VYTLPS 651
           RI+ LGL+ +YP+GY EA A    +          E    SK K   K KQ   +Y L +
Sbjct: 570 RIEALGLKPMYPDGYLEAMAKNNKTNKKRNIFAEEEKSNFSKNKEPPKKKQKCEIYELET 629

Query: 652 SVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFC 711
            VL+HIN D  ++ +W+E +    +G+   L+ + E+F C  C ELVY P+T+ C H  C
Sbjct: 630 EVLKHINQDKTNAKLWEECRKALPDGKTIFLQKVSERFTCPCCLELVYNPVTIPCTHNIC 689

Query: 712 HDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR 764
            +CLKR+F   S   N CP CR  ++K       N   + +L  L+PGY   R
Sbjct: 690 VNCLKRSF---SSGVNCCPSCRHLLDKIIKWKLINFYHRLLL--LYPGYEGGR 737

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|340725067\|ref\|XP_003400896.1\| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UHRF1-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|334883192\|ref\|NP_001229385.1\| E3 ubiquitin-protein ligase UHRF1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|350424739\|ref\|XP_003493896.1\| PREDICTED: E3 ubiquitin-protein ligase UHRF1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi|209413707|ref|NP_001129236.1| E3 ubiquitin-protein ligase UHRF1 [Xenopus laevis] gi|410591702|sp|B6CHA3.1|UHRF1_XENLA RecName: Full=E3 ubiquitin-protein ligase UHRF1; AltName: Full=Nuclear zinc finger protein Np95; Short=XNp95; AltName: Full=Ubiquitin-like PHD and RING finger domain-containing protein 1; AltName: Full=Ubiquitin-like-containing PHD and RING finger domains protein 1 gi|163638968|gb|ABY28114.1| RING finger domain protein Np95 [Xenopus laevis]

Back alignment and taxonomy information

>gi\|383848346\|ref\|XP_003699812.1\| PREDICTED: E3 ubiquitin-protein ligase UHRF1 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|348550328\|ref\|XP_003460984.1\| PREDICTED: E3 ubiquitin-protein ligase UHRF1-like isoform 1 [Cavia porcellus]	Back alignment and taxonomy information

>gi\|307165883\|gb\|EFN60238.1\| E3 ubiquitin-protein ligase UHRF1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|348550330\|ref\|XP_003460985.1\| PREDICTED: E3 ubiquitin-protein ligase UHRF1-like isoform 2 [Cavia porcellus]	Back alignment and taxonomy information

>gi\|395831697\|ref\|XP_003788931.1\| PREDICTED: E3 ubiquitin-protein ligase UHRF1 [Otolemur garnettii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		764
UNIPROTKB\|F1PJN4		792	UHRF1 "Uncharacterized protein	0.816	0.787	0.480	5.2e-186
UNIPROTKB\|A7E320		786	UHRF1 "E3 ubiquitin-protein li	0.780	0.758	0.500	4.2e-184
UNIPROTKB\|B6CHA3		772	uhrf1 "E3 ubiquitin-protein li	0.969	0.959	0.457	2e-182
UNIPROTKB\|F1S7K1		813	UHRF1 "Uncharacterized protein	0.782	0.735	0.491	7.1e-180
UNIPROTKB\|Q96T88		793	UHRF1 "E3 ubiquitin-protein li	0.808	0.779	0.470	6.3e-179
UNIPROTKB\|F6UA42		775	uhrf1 "E3 ubiquitin-protein li	0.967	0.953	0.451	1.2e-177
RGD\|1309990		803	Uhrf2 "ubiquitin-like with PHD	0.772	0.734	0.464	3.7e-172
UNIPROTKB\|Q96PU4		802	UHRF2 "E3 ubiquitin-protein li	0.763	0.726	0.463	8.8e-171
UNIPROTKB\|E2RKA4		803	UHRF2 "Uncharacterized protein	0.772	0.734	0.461	1.1e-170
MGI\|MGI:1923718		803	Uhrf2 "ubiquitin-like, contain	0.772	0.734	0.463	3e-170

UNIPROTKB\|F1PJN4 UHRF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

 Score = 1581 (561.6 bits), Expect = 5.2e-186, Sum P(2) = 5.2e-186
 Identities = 315/655 (48%), Positives = 425/655 (64%)

Query:     1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFD 59
             M++++R++DG   + V  LS+ T + +++ +I+    V    QRLFY+GKQ+ED + LFD
Sbjct:     1 MWIQVRTMDGKVAHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query:    60 YNVNLNDVIQLMIKADIDKNYQSSESSSKENIQPNGPACKPNINTENASSSGNN-TEPED 118
             Y+V LND IQL+++  +     +S+    E    +   C     ++ +S+SG   +E + 
Sbjct:    61 YDVRLNDTIQLLVRQSLVLPPSNSKERDSELSDTDSGCCLGQSESDKSSNSGEAASEADG 120

Query:   119 FVDLKPADSQ------YYKVGDYVDAILETEGAWFESQITHILVDI-NKEKPYD------ 165
                L   D+        YKV +YVDA     GAWFE+Q+  +     ++++P        
Sbjct:   121 KAGLADEDTWDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSQDEPCSSTSSST 180

Query:   166 -EDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERG 224
              EDD+I+ V +  Y ++G   M   D+R   ++++ ++ E  +G  VM NYN + P+ERG
Sbjct:   181 PEDDVIYHVKYDDYPENGVVQMSSRDVRARARNIL-KWQELEVGQVVMLNYNPDNPKERG 239

Query:   225 YWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAE 284
             +W+D  I +K+  R   EL A V IG   L     +C+I FV E++KIE P    E +  
Sbjct:   240 FWYDAEILRKRETRTARELYANVRIGGDSLN----DCRIIFVDEVFKIEHP---GEGSPV 292

Query:   285 DEDHMSTEPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIW 344
              E+ M       R+  P C  C D E+K C+ C C +C GK  PDK ++C+EC   +HI+
Sbjct:   293 IENPMR------RKSGPSCKHCKDDESKTCRVCACHLCGGKQDPDKQLMCDECDMAFHIY 346

Query:   345 CLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTRDWGKGMAC 404
             CL+PPL S+P++DEW+CP C+ D SEV+  G+KLK+SKKKA+MAS  S S RDWGKGMAC
Sbjct:   347 CLRPPLSSIPKEDEWYCPECRNDASEVVLAGEKLKESKKKAKMASATSSSQRDWGKGMAC 406

Query:   405 VGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLS 464
             VGRTK CTIVPS+H+GPIPGI VG  + +R Q SE+GVHRPHV+GIHGR + GA+SLVL+
Sbjct:   407 VGRTKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLA 466

Query:   465 GGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNE 524
             GGYEDDVD G+SF YTGSGGRDLSGNKRT+ QS DQ LT  N+ALA NC+API+D++G E
Sbjct:   467 GGYEDDVDHGNSFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCSAPINDRKGAE 526

Query:   525 AVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQRD 584
             A DW+ GKPVRV+RN  G KHSKYAP EGNRYDGIYKVV+Y+P KG S F+VWR+ L+RD
Sbjct:   527 AKDWRSGKPVRVVRNVKGRKHSKYAPAEGNRYDGIYKVVRYWPEKGKSGFLVWRYLLRRD 586

Query:   585 DEAPAPWTEEGKKRIKDLGLQMIYPEGYXXXXXXXXXXXXNLKRKVSSETLGESK 639
             D  P PWT+EGK RIK LGL M YPEGY            N KR+   E  GE +
Sbjct:   587 DTEPGPWTKEGKDRIKKLGLTMQYPEGYLEARARKEKEKENSKREAEEEE-GEEE 640

GO:0042393 "histone binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB\|A7E320 UHRF1 "E3 ubiquitin-protein ligase UHRF1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B6CHA3 uhrf1 "E3 ubiquitin-protein ligase UHRF1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S7K1 UHRF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96T88 UHRF1 "E3 ubiquitin-protein ligase UHRF1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UA42 uhrf1 "E3 ubiquitin-protein ligase UHRF1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

RGD\|1309990 Uhrf2 "ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96PU4 UHRF2 "E3 ubiquitin-protein ligase UHRF2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RKA4 UHRF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1923718 Uhrf2 "ubiquitin-like, containing PHD and RING finger domains 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96T88	UHRF1_HUMAN	6, ., 3, ., 2, ., -	0.4404	0.9712	0.9356	yes	N/A
F6UA42	UHRF1_XENTR	6, ., 3, ., 2, ., -	0.4521	0.9607	0.9470	yes	N/A
A7E320	UHRF1_BOVIN	6, ., 3, ., 2, ., -	0.4671	0.9725	0.9452	yes	N/A
Q7TPK1	UHRF1_RAT	6, ., 3, ., 2, ., -	0.4520	0.9764	0.9638	yes	N/A
E7EZF3	UHRF1_DANRE	6, ., 3, ., 2, ., -	0.4527	0.9764	0.9613	yes	N/A
Q8VDF2	UHRF1_MOUSE	6, ., 3, ., 2, ., -	0.4547	0.9816	0.9590	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		764
pfam02182		154	pfam02182, YDG_SRA, YDG/SRA domain	7e-62
smart00466		155	smart00466, SRA, SET and RING finger associated do	2e-55
cd01797		78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	1e-21
pfam12148		85	pfam12148, DUF3590, Protein of unknown function (D	2e-14
smart00213		72	smart00213, UBQ, Ubiquitin homologues	2e-11
smart00249		47	smart00249, PHD, PHD zinc finger	2e-11
cd01769		69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-10
pfam00240		69	pfam00240, ubiquitin, Ubiquitin family	2e-10
pfam00628		51	pfam00628, PHD, PHD-finger	2e-10
cd01807		74	cd01807, GDX_N, ubiquitin-like domain of GDX	6e-09
cd01809		72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	5e-08
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	1e-07
cd01803		76	cd01803, Ubiquitin, Ubiquitin	4e-07
cd00162		45	cd00162, RING, RING-finger (Really Interesting New	4e-07
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-07
cd00196		69	cd00196, UBQ, Ubiquitin-like proteins	4e-06
smart00184		40	smart00184, RING, Ring finger	1e-05
cd01805		77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-05
cd04718		148	cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol	8e-05
cd01806		76	cd01806, Nedd8, Nebb8-like ubiquitin protein	9e-05
cd01800		76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-04
TIGR00599		397	TIGR00599, rad18, DNA repair protein rad18	2e-04
pfam13920		49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-04
PTZ00044		76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-04
pfam00097		40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-04
pfam11976		72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	0.001
TIGR00601		378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	0.003

>gnl\|CDD\|216920 pfam02182, YDG_SRA, YDG/SRA domain	Back alignment and domain information

 Score =  204 bits (521), Expect = 7e-62
 Identities = 81/172 (47%), Positives = 100/172 (58%), Gaps = 25/172 (14%)

Query: 418 HFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVG---AFSLVLSGGYEDDVDDG 474
             G +PG+EVG  + YR +    G+HRPH +GI G +  G   A S+V SGGYEDD D+G
Sbjct: 2   RIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGMKSEGGTIATSIVSSGGYEDDEDNG 61

Query: 475 DSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPV 534
           D  +YTG GG DLSGNK    QS DQ L R N ALA +C               +KG PV
Sbjct: 62  DVLVYTGQGGNDLSGNK----QSEDQKLERGNLALANSC---------------RKGNPV 102

Query: 535 RVMRNFHGAKHSKYAPKEG-NRYDGIYKVVKYYPVKGSSDFIVWRFHLQRDD 585
           RV+R   G   S +APK G  RYDG+Y+V KY+  KG S F V++F L R  
Sbjct: 103 RVIRGEKG--PSSHAPKGGIYRYDGLYRVEKYWREKGKSGFKVFKFKLVRIP 152

The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154

>gnl\|CDD\|197742 smart00466, SRA, SET and RING finger associated domain	Back alignment and domain information

>gnl\|CDD\|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF	Back alignment and domain information

>gnl\|CDD\|152583 pfam12148, DUF3590, Protein of unknown function (DUF3590)	Back alignment and domain information

>gnl\|CDD\|214563 smart00213, UBQ, Ubiquitin homologues	Back alignment and domain information

>gnl\|CDD\|214584 smart00249, PHD, PHD zinc finger	Back alignment and domain information

>gnl\|CDD\|176364 cd01769, UBL, Ubiquitin-like domain of UBL	Back alignment and domain information

>gnl\|CDD\|215813 pfam00240, ubiquitin, Ubiquitin family	Back alignment and domain information

>gnl\|CDD\|201356 pfam00628, PHD, PHD-finger	Back alignment and domain information

>gnl\|CDD\|176402 cd01807, GDX_N, ubiquitin-like domain of GDX	Back alignment and domain information

>gnl\|CDD\|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

>gnl\|CDD\|176398 cd01803, Ubiquitin, Ubiquitin	Back alignment and domain information

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|176352 cd00196, UBQ, Ubiquitin-like proteins	Back alignment and domain information

>gnl\|CDD\|214546 smart00184, RING, Ring finger	Back alignment and domain information

>gnl\|CDD\|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23	Back alignment and domain information

>gnl\|CDD\|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>gnl\|CDD\|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein	Back alignment and domain information

>gnl\|CDD\|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120	Back alignment and domain information

>gnl\|CDD\|233043 TIGR00599, rad18, DNA repair protein rad18	Back alignment and domain information

>gnl\|CDD\|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|185411 PTZ00044, PTZ00044, ubiquitin; Provisional	Back alignment and domain information

>gnl\|CDD\|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like	Back alignment and domain information

>gnl\|CDD\|233045 TIGR00601, rad23, UV excision repair protein Rad23	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		764
smart00466		155	SRA SET and RING finger associated domain. Domain	100.0
PF02182		155	SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This	100.0
PF12148		85	DUF3590: Protein of unknown function (DUF3590); In	100.0
cd01807		74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.72
cd01797		78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.69
cd01793		74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.68
PTZ00044		76	ubiquitin; Provisional	99.67
cd01802		103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.64
cd01805		77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.62
cd01791		73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.61
cd01810		74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.61
cd01806		76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.61
cd01803		76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.61
cd01804		78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.59
cd01794		70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.58
cd01798		70	parkin_N amino-terminal ubiquitin-like of parkin p	99.58
cd01809		72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.57
KOG0005\|consensus		70		99.56
cd01808		71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.54
cd01792		80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.54
KOG0003\|consensus		128		99.54
TIGR00601		378	rad23 UV excision repair protein Rad23. All protei	99.52
KOG0004\|consensus		156		99.5
KOG1244\|consensus		336		99.49
PF00240		69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.49
cd01790		79	Herp_N Homocysteine-responsive endoplasmic reticul	99.49
cd01796		71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.47
cd01800		76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.41
cd01812		71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.41
KOG0010\|consensus		493		99.4
cd01763		87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.39
KOG0011\|consensus		340		99.36
cd01815		75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.33
cd01813		74	UBP_N UBP ubiquitin processing protease. The UBP (	99.32
smart00213		64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.29
cd01814		113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.27
cd01799		75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.12
cd01769		69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.04
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.0
PF11976		72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.99
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	98.95
cd01795		107	USP48_C USP ubiquitin-specific protease. The USP (	98.92
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.88
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	98.87
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.84
KOG0287\|consensus		442		98.78
KOG0825\|consensus		1134		98.77
KOG0001\|consensus		75		98.77
KOG1512\|consensus		381		98.73
KOG4248\|consensus		1143		98.7
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.65
PF13881		111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.63
KOG0823\|consensus		230		98.56
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.55
cd01789		84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.55
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.5
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.49
KOG0317\|consensus		293		98.46
KOG0311\|consensus		381		98.46
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.45
KOG0320\|consensus		187		98.43
KOG4299\|consensus		613		98.41
PLN02560		308	enoyl-CoA reductase	98.41
PHA02929		238	N1R/p28-like protein; Provisional	98.39
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.36
cd01788		119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.36
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.36
KOG2177\|consensus		386		98.3
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	98.28
KOG2660\|consensus		331		98.27
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.25
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.25
PF14560		87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.24
PHA02926		242	zinc finger-like protein; Provisional	98.24
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	98.24
KOG4443\|consensus		694		98.23
cd01801		77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.2
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.07
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.06
KOG4159\|consensus		398		98.04
KOG0006\|consensus		446		98.04
cd00196		69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.03
PF14634		44	zf-RING_5: zinc-RING finger domain	98.01
KOG2164\|consensus		513		97.9
PF11543		80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.87
KOG0383\|consensus		696		97.84
KOG0957\|consensus		707		97.82
KOG1245\|consensus		1404		97.7
KOG1973\|consensus		274		97.67
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.6
smart00743		61	Agenet Tudor-like domain present in plant sequence	97.57
KOG0978\|consensus		698		97.44
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.4
KOG0824\|consensus		324		97.31
COG5152		259	Uncharacterized conserved protein, contains RING a	97.27
KOG0802\|consensus		543		97.27
COG5222		427	Uncharacterized conserved protein, contains RING Z	97.22
KOG0955\|consensus		1051		97.19
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	97.09
KOG1813\|consensus		313		96.98
cd01811		80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	96.93
KOG1769\|consensus		99		96.85
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.82
KOG4628\|consensus		348		96.8
PF05641		68	Agenet: Agenet domain; InterPro: IPR008395 This do	96.76
KOG1872\|consensus		473		96.65
KOG0297\|consensus		391		96.65
KOG4495\|consensus		110		96.56
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.53
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.51
KOG4367\|consensus		699		96.49
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.42
KOG4323\|consensus		464		96.42
KOG3493\|consensus		73		96.38
KOG4172\|consensus		62		96.21
KOG0954\|consensus		893		96.01
KOG2879\|consensus		298		95.93
PF13019		162	Telomere_Sde2: Telomere stability and silencing	95.91
PF10302		97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.73
KOG1039\|consensus		344		95.66
COG5141		669	PHD zinc finger-containing protein [General functi	95.64
PF00789		82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.49
smart00333		57	TUDOR Tudor domain. Domain of unknown function pre	95.39
PF08817		79	YukD: WXG100 protein secretion system (Wss), prote	95.27
KOG0013\|consensus		231		95.23
PF13831		36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	95.2
KOG4265\|consensus		349		94.78
KOG1002\|consensus		791		94.65
COG3440		301	Predicted restriction endonuclease [Defense mechan	94.48
smart00166		80	UBX Domain present in ubiquitin-regulatory protein	94.42
COG5219		1525	Uncharacterized conserved protein, contains RING Z	94.3
PF11470		65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	94.3
KOG4692\|consensus		489		94.23
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.1
cd01770		79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	93.93
KOG0828\|consensus		636		93.87
KOG1785\|consensus		563		93.58
KOG1473\|consensus		1414		93.34
KOG0804\|consensus		493		93.34
cd04508		48	TUDOR Tudor domains are found in many eukaryotic o	93.22
cd01767		77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	93.17
cd01772		79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	92.97
KOG0825\|consensus		1134		92.97
KOG0956\|consensus		900		92.93
COG5417		81	Uncharacterized small protein [Function unknown]	92.75
COG5227		103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	92.5
PF09465		55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	92.34
KOG4362\|consensus		684		92.24
KOG4739\|consensus		233		92.16
KOG1645\|consensus		463		92.1
KOG4185\|consensus		296		91.96
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	91.87
KOG1001\|consensus		674		91.71
KOG4275\|consensus		350		91.7
KOG1814\|consensus		445		91.62
KOG3800\|consensus		300		91.47
PF11717		55	Tudor-knot: RNA binding activity-knot of a chromod	91.41
KOG1246\|consensus		904		91.4
KOG3002\|consensus		299		91.19
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	90.83
KOG3161\|consensus		861		90.71
COG5194		88	APC11 Component of SCF ubiquitin ligase and anapha	90.65
cd01774		85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	90.61
KOG1639\|consensus		297		90.36
KOG1571\|consensus		355		90.18
cd01773		82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	89.52
KOG3039\|consensus		303		89.48
KOG2817\|consensus		394		89.36
KOG0827\|consensus		465		88.61
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	88.33
KOG1734\|consensus		328		87.63
PF09379		80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	86.77
cd06409		86	PB1_MUG70 The MUG70 protein is a product of the me	85.75
cd01771		80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	84.83
PRK06437		67	hypothetical protein; Provisional	83.63
PF12158		148	DUF3592: Protein of unknown function (DUF3592); In	83.44
PHA03096		284	p28-like protein; Provisional	83.26
PF14446		54	Prok-RING_1: Prokaryotic RING finger family 1	82.7
PF14453		57	ThiS-like: ThiS-like ubiquitin	82.51
KOG0298\|consensus		1394		82.26
PF11717		55	Tudor-knot: RNA binding activity-knot of a chromod	81.98
PF04641		260	Rtf2: Rtf2 RING-finger	81.64
PLN00104		450	MYST -like histone acetyltransferase; Provisional	81.64
COG5175		480	MOT2 Transcriptional repressor [Transcription]	80.31

>smart00466 SRA SET and RING finger associated domain	Back alignment and domain information

Probab=100.00  E-value=7.4e-55  Score=421.81  Aligned_cols=150  Identities=50%  Similarity=0.909  Sum_probs=142.4

Q ss_pred             CCCCCCCCceeecceecchhhhhhhcccCCCCCCCccCC----CCCeEEEEecCCccccCCCCCeEEEEccCCCCCCCCc
Q psy11302        416 SDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGRE----DVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNK  491 (764)
Q Consensus       416 ~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~----~~gA~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk  491 (764)
                      .++||+||||+|||+|+||+||+.+|||+++|+||++.+    ..||+|||+||||+||+|+||+|+|||+||+|.    
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~----   77 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM----   77 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEccCCccC----
Confidence            478999999999999999999999999999999999988    789999999999999999999999999999885    


Q ss_pred             cccccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEEEEecCC
Q psy11302        492 RTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGS  571 (764)
Q Consensus       492 ~~~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~~~~~g~  571 (764)
                       ++.|.+||+|+++|+||++||               ++++|||||||++.  +++|+|.+||||||||+|++||.++|+
T Consensus        78 -~~~~~~dQkl~~gNlAL~~S~---------------~~~~PVRViRg~~~--~~~~~p~~gyrYDGLY~V~~~w~e~g~  139 (155)
T smart00466       78 -THGQPEDQKLERGNLALEASC---------------RKGIPVRVVRGMKG--YSKYAPGKGYIYDGLYRIVDYWREVGK  139 (155)
T ss_pred             -CCCCccccEecchhHHHHHHH---------------hcCCceEEEccccc--cCCCCCCCeEEECcEEEEEEEEEecCC
Confidence             345889999999999999875               68999999999996  689999999999999999999999999


Q ss_pred             CCcEEEEEEEeecCCC
Q psy11302        572 SDFIVWRFHLQRDDEA  587 (764)
Q Consensus       572 ~g~~v~~f~l~R~~~~  587 (764)
                      +||.||||+|+|+++|
T Consensus       140 ~G~~v~kfkL~R~~gQ  155 (155)
T smart00466      140 SGFLVFKFKLVRIPGQ  155 (155)
T ss_pred             CCcEEEEEEEEeCCCC
Confidence            9999999999999997

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain	Back alignment and domain information

>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length	Back alignment and domain information

>cd01807 GDX_N ubiquitin-like domain of GDX	Back alignment and domain information

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF	Back alignment and domain information

>cd01793 Fubi Fubi ubiquitin-like protein	Back alignment and domain information

>PTZ00044 ubiquitin; Provisional	Back alignment and domain information

>cd01802 AN1_N ubiquitin-like domain of AN1	Back alignment and domain information

>cd01805 RAD23_N Ubiquitin-like domain of RAD23	Back alignment and domain information

>cd01791 Ubl5 UBL5 ubiquitin-like modifier	Back alignment and domain information

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2	Back alignment and domain information

>cd01806 Nedd8 Nebb8-like ubiquitin protein	Back alignment and domain information

>cd01803 Ubiquitin Ubiquitin	Back alignment and domain information

>cd01804 midnolin_N Ubiquitin-like domain of midnolin	Back alignment and domain information

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein	Back alignment and domain information

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein	Back alignment and domain information

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein	Back alignment and domain information

>KOG0005\|consensus	Back alignment and domain information

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2	Back alignment and domain information

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2	Back alignment and domain information

>KOG0003\|consensus	Back alignment and domain information

>TIGR00601 rad23 UV excision repair protein Rad23	Back alignment and domain information

>KOG0004\|consensus	Back alignment and domain information

>KOG1244\|consensus	Back alignment and domain information

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade	Back alignment and domain information

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein	Back alignment and domain information

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain	Back alignment and domain information

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120	Back alignment and domain information

>cd01812 BAG1_N Ubiquitin-like domain of BAG1	Back alignment and domain information

>KOG0010\|consensus	Back alignment and domain information

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)	Back alignment and domain information

>KOG0011\|consensus	Back alignment and domain information

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP	Back alignment and domain information

>cd01813 UBP_N UBP ubiquitin processing protease	Back alignment and domain information

>smart00213 UBQ Ubiquitin homologues	Back alignment and domain information

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4	Back alignment and domain information

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1	Back alignment and domain information

>cd01769 UBL Ubiquitin-like domain of UBL	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>cd01795 USP48_C USP ubiquitin-specific protease	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>KOG0287\|consensus	Back alignment and domain information

>KOG0825\|consensus	Back alignment and domain information

>KOG0001\|consensus	Back alignment and domain information

>KOG1512\|consensus	Back alignment and domain information

>KOG4248\|consensus	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A	Back alignment and domain information

>KOG0823\|consensus	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0317\|consensus	Back alignment and domain information

>KOG0311\|consensus	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG0320\|consensus	Back alignment and domain information

>KOG4299\|consensus	Back alignment and domain information

>PLN02560 enoyl-CoA reductase	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd01788 ElonginB Ubiquitin-like domain of Elongin B	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG2177\|consensus	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>KOG2660\|consensus	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG4443\|consensus	Back alignment and domain information

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>KOG4159\|consensus	Back alignment and domain information

>KOG0006\|consensus	Back alignment and domain information

>cd00196 UBQ Ubiquitin-like proteins	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>KOG2164\|consensus	Back alignment and domain information

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway	Back alignment and domain information

>KOG0383\|consensus	Back alignment and domain information

>KOG0957\|consensus	Back alignment and domain information

>KOG1245\|consensus	Back alignment and domain information

>KOG1973\|consensus	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>smart00743 Agenet Tudor-like domain present in plant sequences	Back alignment and domain information

>KOG0978\|consensus	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0824\|consensus	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0802\|consensus	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG0955\|consensus	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1813\|consensus	Back alignment and domain information

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2	Back alignment and domain information

>KOG1769\|consensus	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4628\|consensus	Back alignment and domain information

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []	Back alignment and domain information

>KOG1872\|consensus	Back alignment and domain information

>KOG0297\|consensus	Back alignment and domain information

>KOG4495\|consensus	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>KOG4367\|consensus	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG4323\|consensus	Back alignment and domain information

>KOG3493\|consensus	Back alignment and domain information

>KOG4172\|consensus	Back alignment and domain information

>KOG0954\|consensus	Back alignment and domain information

>KOG2879\|consensus	Back alignment and domain information

>PF13019 Telomere_Sde2: Telomere stability and silencing	Back alignment and domain information

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi	Back alignment and domain information

>KOG1039\|consensus	Back alignment and domain information

>COG5141 PHD zinc finger-containing protein [General function prediction only]	Back alignment and domain information

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast	Back alignment and domain information

>smart00333 TUDOR Tudor domain	Back alignment and domain information

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []	Back alignment and domain information

>KOG0013\|consensus	Back alignment and domain information

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A	Back alignment and domain information

>KOG4265\|consensus	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>COG3440 Predicted restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>smart00166 UBX Domain present in ubiquitin-regulatory proteins	Back alignment and domain information

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly	Back alignment and domain information

>KOG4692\|consensus	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>cd01770 p47_UBX p47-like ubiquitin domain	Back alignment and domain information

>KOG0828\|consensus	Back alignment and domain information

>KOG1785\|consensus	Back alignment and domain information

>KOG1473\|consensus	Back alignment and domain information

>KOG0804\|consensus	Back alignment and domain information

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains	Back alignment and domain information

>cd01767 UBX UBX (ubiquitin regulatory X) domain	Back alignment and domain information

>cd01772 SAKS1_UBX SAKS1-like UBX domain	Back alignment and domain information

>KOG0825\|consensus	Back alignment and domain information

>KOG0956\|consensus	Back alignment and domain information

>COG5417 Uncharacterized small protein [Function unknown]	Back alignment and domain information

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane	Back alignment and domain information

>KOG4362\|consensus	Back alignment and domain information

>KOG4739\|consensus	Back alignment and domain information

>KOG1645\|consensus	Back alignment and domain information

>KOG4185\|consensus	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>KOG1001\|consensus	Back alignment and domain information

>KOG4275\|consensus	Back alignment and domain information

>KOG1814\|consensus	Back alignment and domain information

>KOG3800\|consensus	Back alignment and domain information

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F	Back alignment and domain information

>KOG1246\|consensus	Back alignment and domain information

>KOG3002\|consensus	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>KOG3161\|consensus	Back alignment and domain information

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]	Back alignment and domain information

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain	Back alignment and domain information

>KOG1639\|consensus	Back alignment and domain information

>KOG1571\|consensus	Back alignment and domain information

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain	Back alignment and domain information

>KOG3039\|consensus	Back alignment and domain information

>KOG2817\|consensus	Back alignment and domain information

>KOG0827\|consensus	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG1734\|consensus	Back alignment and domain information

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain	Back alignment and domain information

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain	Back alignment and domain information

>cd01771 Faf1_UBX Faf1 UBX domain	Back alignment and domain information

>PRK06437 hypothetical protein; Provisional	Back alignment and domain information

>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised	Back alignment and domain information

>PHA03096 p28-like protein; Provisional	Back alignment and domain information

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1	Back alignment and domain information

>PF14453 ThiS-like: ThiS-like ubiquitin	Back alignment and domain information

>KOG0298\|consensus	Back alignment and domain information

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>PLN00104 MYST -like histone acetyltransferase; Provisional	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		764
3oln_A		231	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		5e-88
2zkd_A		210	Crystal Structure Of The Sra Domain Of Mouse Np95 I		2e-87
2pb7_A		239	Crystal Structure Of The Sra Domain Of The Human Uh		8e-85
3bi7_A		212	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		3e-82
3f8j_B		212	Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C		5e-82
3clz_A		212	The Set And Ring Associated (Sra) Domain Of Uhrf1 B		4e-81
2zo0_B		212	Mouse Np95 Sra Domain Dna Specific Complex 1 Length		6e-81
3dwh_A		208	Structural And Functional Analysis Of Sra Domain Le		6e-81
3ask_A		226	Structure Of Uhrf1 In Complex With Histone Tail Len		1e-42
4gy5_A		241	Crystal Structure Of The Tandem Tudor Domain And Pl		9e-42
3q0c_X		167	Crystal Structure Of Suvh5 Sra-Fully Methylated Cg		3e-19
2l3r_A		162	Nmr Structure Of Uhrf1 Tandem Tudor Domains In A Co		4e-19
3q0b_X		167	Crystal Structure Of Suvh5 Sra- Fully Methylated Cg		6e-19
1z6u_A		150	Np95-Like Ring Finger Protein Isoform B [homo Sapie		8e-18
3db3_A		161	Crystal Structure Of The Tandem Tudor Domains Of Th		2e-17
3fl2_A		124	Crystal Structure Of The Ring Domain Of The E3 Ubiq		4e-17
1wy8_A		89	Solution Structure Of The N-Terminal Ubiquitin-Like		3e-15
3zvz_B		57	Phd Finger Of Human Uhrf1 Length = 57		4e-15
3zvy_A		72	Phd Finger Of Human Uhrf1 In Complex With Unmodifie		4e-15
3sou_A		70	Structure Of Uhrf1 Phd Finger In Complex With Histo		1e-14
3shb_A		77	Crystal Structure Of Phd Domain Of Uhrf1 Length = 7		1e-14
2lgg_A		69	Structure Of Phd Domain Of Uhrf1 In Complex With H3		1e-14
3t6r_A		72	Structure Of Uhrf1 In Complex With Unmodified H3 N-		4e-14
2e6s_A		77	Solution Structure Of The Phd Domain In Ring Finger		2e-13
2faz_A		78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		6e-12
1f62_A		51	Wstf-Phd Length = 51		2e-08
2dzi_A		81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-06
2gbk_A		83	Crystal Structure Of The 9-10 Moad Insertion Mutant		1e-06
3l0w_B		169	Structure Of Split Monoubiquitinated Pcna With Ubiq		4e-06
2e6r_A		92	Solution Structure Of The Phd Domain In Smcy Protei		5e-06
4ii3_B		96	Crystal Structure Of S. Pombe Ubiquitin Activating		7e-06
4hcn_B		98	Crystal Structure Of Burkholderia Pseudomallei Effe		7e-06
1otr_B		76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		1e-05
3olm_D		79	Structure And Function Of A Ubiquitin Binding Site		1e-05
4ap4_C		80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-05
2znv_B		76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		1e-05
3dvg_Y		79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		1e-05
3u30_A		172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		1e-05
4ii2_B		83	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-05
3u5e_m		128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-05
4a18_K		129	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-05
3jvz_X		81	E2~ubiquitin-Hect Length = 81		1e-05
2ld9_A		77	Backbone Structure Of Ubiquitin Determined Using Ba		1e-05
2w9n_A		152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		2e-05
2ojr_A		111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-05
1xd3_B		75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-05
1cmx_B		76	Structural Basis For The Specificity Of Ubiquitin C		2e-05
3nob_A		78	Structure Of K11-Linked Di-Ubiquitin Length = 78		2e-05
2zvn_A		154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		2e-05
2khw_B		79	Solution Structure Of The Human Polymerase Iota Ubm		2e-05
1aar_A		76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-05
3b08_A		152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		2e-05
2y5b_B		152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-05
3v6e_B		91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		2e-05
3u5g_f		152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-05
3dvg_X		80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-05
2znv_C		77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-05
2ysl_A		73	Solution Structure Of The Ring Domain (1-66) From T		2e-05
1c3t_A		76	Rotamer Strain As A Determinant Of Protein Structur		2e-05
1yx5_B		98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-05
3ldz_F		73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		2e-05
2k6d_B		76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		2e-05
3rul_A		79	New Strategy To Analyze Structures Of Glycopeptide-		2e-05
3vdz_A		111	Tailoring Encodable Lanthanide-Binding Tags As Mri		2e-05
3ai5_A		307	Crystal Structure Of Yeast Enhanced Green Fluoresce		2e-05
2o6v_D		76	Crystal Structure And Solution Nmr Studies Of Lys48		2e-05
3ons_A		72	Crystal Structure Of Human Ubiquitin In A New Cryst		2e-05
1ud7_A		76	Solution Structure Of The Designed Hydrophobic Core		2e-05
1zgu_B		76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-05
3k9o_B		96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		3e-05
1sif_A		88	Crystal Structure Of A Multiple Hydrophobic Core Mu		3e-05
2fcs_A		76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-05
3q3f_A		189	Engineering Domain-Swapped Binding Interfaces By Mu		3e-05
1yj1_A		76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-05
1yiw_A		76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-05
3v6c_B		91	Crystal Structure Of Usp2 In Complex With Mutated U		4e-05
1zw7_A		82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-05
2o6v_B		76	Crystal Structure And Solution Nmr Studies Of Lys48		4e-05
1s1q_B		76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		4e-05
3zf7_s		128	High-resolution Cryo-electron Microscopy Structure		5e-05
3u5c_f		152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-05
2kdi_A		114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		6e-05
2zcb_A		76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		6e-05
2jwz_A		76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		7e-05
2k25_A		103	Automated Nmr Structure Of The Ubb By Fapsy Length		7e-05
2xk5_B		76	Crystal Structure Of K6-Linked Diubiquitin Length =		8e-05
2ecw_A		85	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-05
2gbj_A		84	Crystal Structure Of The 9-10 8 Glycine Insertion M		1e-04
2gbr_A		81	Crystal Structure Of The 35-36 Moad Insertion Mutan		1e-04
4hjk_A		77	U7ub7 Disulfide Variant Length = 77		1e-04
3h7s_A		76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		1e-04
2ysj_A		63	Solution Structure Of The Ring Domain (1-56) From T		1e-04
3mtn_B		85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		1e-04
3n3k_B		85	The Catalytic Domain Of Usp8 In Complex With A Usp8		2e-04
2ecv_A		85	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-04
1ogw_A		76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		2e-04
4epo_C		149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-04
4ayc_B		138	Rnf8 Ring Domain Structure Length = 138		2e-04
4gsw_A		80	Crystal Structure Of Ubiquitin From Entamoeba Histo		2e-04
2jvc_A		82	Nmr Solution Structure Of Ubiquitin Like Protein Le		2e-04
4ayc_A		138	Rnf8 Ring Domain Structure Length = 138		3e-04
2egp_A		79	Solution Structure Of The Ring-Finger Domain From H		5e-04
4dwf_A		90	Crystal Structure Of A Hla-B Associated Transcript		6e-04
4i6l_B		76	Crystal Structure Of Otub1 In Complex With Ubiquiti		7e-04
1xwh_A		66	Nmr Structure Of The First Phd Finger Of Autoimmune		9e-04

>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231