Psyllid ID: psy11347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHcccccccEEEccccEEEEEEccccEEEEEEccccccccEEEEccHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHccccccccccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHcccccHccccccHHHHcccccccccccHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHcccccccccccccccccEEEccccEEEEEEEccccccccEEEEcccHcHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEccccccccccccccccHHHHHHHHccccEcccccccHHHHHHHcccccccccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
cpgtesesagkvsacqgcpnqsicssgaaksvdpgIELVKSHLSNVKHKVLVLsgkggvgksTFTNLLARVLAKsnesvdvgvldldicgpsmprmmGLLNEQvhqsasgwspvfleeNLSVMSIGFLlnspddaviwrgpkkntMIRQFLSEvdwgngleyllidtppgtsdeHLSLVQYLKglpdigaivvttpqevslLDVRKEIDFcrkvnipiigvvenmatfvcpkctkpseifpkdsggaekMCAELsvpflgsvpidplvtrhcdegtsaidtpsaCVDAIQQIVQ
Flexible Loop (DISEMBL)
cpgtesesagkvsacqgcPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVlvlsgkggvgkSTFTNLLARVLaksnesvdvgvLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Low Complexity Region (SEG)
CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNvkhkvlvlsgkggvgksTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Disordered region (IsUnstruct)
**********************************GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPK***GAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAI*****
Disordered Region (DISOPRED)
*PGTE**************************************SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL**************VFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Disordered Region (DISEMBL)
**************CQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Disordered Region (DISPRO)
**************C*GCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q6P298	321	Cytosolic Fe-S cluster as	yes	N/A	0.986	0.903	0.651	1e-112
Q3KQF0	315	Cytosolic Fe-S cluster as	N/A	N/A	0.935	0.873	0.682	1e-110
Q16T79	318	Cytosolic Fe-S cluster as	N/A	N/A	0.989	0.915	0.648	1e-108
Q5I050	315	Cytosolic Fe-S cluster as	N/A	N/A	0.935	0.873	0.678	1e-108
Q5EB25	320	Cytosolic Fe-S cluster as	yes	N/A	0.935	0.859	0.678	1e-107
Q24K00	320	Cytosolic Fe-S cluster as	yes	N/A	0.986	0.906	0.624	1e-107
Q7PV10	325	Cytosolic Fe-S cluster as	yes	N/A	0.989	0.895	0.630	1e-107
B0X4N8	334	Cytosolic Fe-S cluster as	N/A	N/A	0.986	0.868	0.643	1e-107
A7RUD5	318	Cytosolic Fe-S cluster as	N/A	N/A	0.993	0.918	0.633	1e-107
P53384	320	Cytosolic Fe-S cluster as	yes	N/A	0.993	0.912	0.625	1e-106

>sp|Q6P298|NUBP1_DANRE Cytosolic Fe-S cluster assembly factor nubp1 OS=Danio rerio GN=nubp1 PE=2 SV=2

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/298 (65%), Positives = 244/298 (81%), Gaps = 8/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT S+ AGK SACQGCPNQSIC+SGA K+ DP IE +K  +++VKHK+LVLSGKGGVG
Sbjct: 12  CPGTSSDQAGKSSACQGCPNQSICASGATKAPDPAIEEIKQKMTSVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  L+  LA S+ S +V +LD+DICGPS+P++MGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLSHALA-SDSSKEVALLDVDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMSIGFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct: 131 AVMSIGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSIVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL G    GA+++TTPQEVSL DVRKEI FC+KVN+PI+GV+ENM+ FVCPKC   S+IF
Sbjct: 190 YLSGAGIDGAVIITTPQEVSLQDVRKEIRFCKKVNLPILGVIENMSGFVCPKCKNTSQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPSACVDAIQQIVQ 294
           P  +GGA++MC EL++P LG +P+DP + + CDEG S +    D+P+A   A Q IVQ
Sbjct: 250 PPTTGGAQRMCEELNLPLLGRIPLDPRIGKSCDEGKSFLTEVPDSPAAA--AYQSIVQ 305

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.
Danio rerio (taxid: 7955)

>sp|Q3KQF0|NUP1A_XENLA Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis GN=nubp1-a PE=2 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/277 (68%), Positives = 229/277 (82%), Gaps = 2/277 (0%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+S  AGK SACQGCPNQSIC+SGAA   DP IE +K  +S VKHK+LVLSGKGGVG
Sbjct: 12  CPGTDSTEAGKSSACQGCPNQSICASGAAAGPDPAIEEIKEKMSLVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  LA  LA+ +E  +V +LD+DICGPS+P+MMGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLAHGLAQ-DEGKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG+ ++YL++DTPPGTSDEHLS+VQ
Sbjct: 131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGD-VDYLIVDTPPGTSDEHLSVVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA+++TTPQEVSL DVRKEI+FCRKV +PIIGVVENM+ F+CPKC   S+IF
Sbjct: 190 YLSAAGIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKNESQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
           P  +GGAEKMC +LSV  LG VP+DP + + CD G S
Sbjct: 250 PPTTGGAEKMCTDLSVSLLGKVPLDPNIGKSCDTGKS 286

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Xenopus laevis (taxid: 8355)

>sp|Q16T79|NUBP1_AEDAE Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Aedes aegypti GN=AAEL010360 PE=3 SV=2

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/296 (64%), Positives = 235/296 (79%), Gaps = 5/296 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGTESE+AGK SAC GCPNQ IC++G  K  DP I LVK  L  V++K+LVLSGKGGVG
Sbjct: 17  CPGTESENAGKASACAGCPNQQICATGP-KGPDPSIALVKEKLKEVRNKILVLSGKGGVG 75

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T LL+R +A+ N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct: 76  KSTVTALLSRAMAQLNPERNYGVLDVDICGPSQPRVLGVLGEQVHQSGSGWSPVYVEDNL 135

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct: 136 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSATT 194

Query: 181 YLKGLP-DIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239
           +LK    + GA++VTTPQEV+LLDVRKEI FC+K+ IP++GVVENM+ FVCPKCT  S+I
Sbjct: 195 FLKETDGNWGAVLVTTPQEVALLDVRKEITFCKKMGIPVVGVVENMSVFVCPKCTTESDI 254

Query: 240 FPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI--DTPSACVDAIQQIV 293
           FP  +GGAEKMC E+ V +LG +P+DP + + CDEG   I   + S  V A+ QIV
Sbjct: 255 FPAKTGGAEKMCEEMEVAYLGKLPLDPRLAKCCDEGKDFITEHSKSPTVIALHQIV 310

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Aedes aegypti (taxid: 7159)

>sp|Q5I050|NUP1B_XENLA Cytosolic Fe-S cluster assembly factor nubp1-B OS=Xenopus laevis GN=nubp1-b PE=2 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 226/277 (81%), Gaps = 2/277 (0%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT S  AGK SACQGCPNQSIC+S A  + DP IE +K  +S VKHK+LVLSGKGGVG
Sbjct: 12  CPGTGSTEAGKSSACQGCPNQSICASAATSAPDPAIEEIKEKMSLVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  LA  LA+ +E  +V +LD+DICGPS+PRMMGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLAHGLAQ-DEGKEVALLDVDICGPSIPRMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct: 131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSVVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA++VTTPQEVSL DVRKEI+FCRKV +PIIGVVENM+ F+CPKC   S+IF
Sbjct: 190 YLSAAGIDGAVIVTTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCENESQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
           P  +GGAEKMC +L+V  LG VP+DP + + CD G S
Sbjct: 250 PPTTGGAEKMCTDLNVSLLGKVPLDPNIGKSCDTGKS 286

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Xenopus laevis (taxid: 8355)

>sp|Q5EB25|NUBP1_XENTR Cytosolic Fe-S cluster assembly factor nubp1 OS=Xenopus tropicalis GN=nubp1 PE=2 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 226/277 (81%), Gaps = 2/277 (0%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT S  AGK SACQGCPNQSIC+SG     DP IE +K  LS+VKHK+LVLSGKGGVG
Sbjct: 12  CPGTGSTEAGKSSACQGCPNQSICASGTMSGPDPAIEEIKEKLSSVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  LA  LA+ +ES +V +LD+DICGPS+P+MMGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLAHGLAQ-DESKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL+IDTPPGTSDEHLS+VQ
Sbjct: 131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIIDTPPGTSDEHLSVVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA+++TTPQEVSL DVRKEI+FC KV +PIIGVVENM+ F+CPKC   S+IF
Sbjct: 190 YLSVAGIDGAVIITTPQEVSLQDVRKEINFCHKVKLPIIGVVENMSGFICPKCKNESQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
           P  +GGAEKMC +L+V  LG VP+DP + + CD G S
Sbjct: 250 PPTTGGAEKMCTDLNVSLLGKVPLDPNIGKSCDTGKS 286

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Xenopus tropicalis (taxid: 8364)

>sp|Q24K00|NUBP1_BOVIN Cytosolic Fe-S cluster assembly factor NUBP1 OS=Bos taurus GN=NUBP1 PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/298 (62%), Positives = 233/298 (78%), Gaps = 8/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPG +S  AG+ ++CQGCPNQ +C+SGA  + DP IE +K  +  VKHK+LVLSGKGGVG
Sbjct: 8   CPGADSAQAGRGASCQGCPNQRLCASGAGAAADPAIEEIKEKMKTVKHKILVLSGKGGVG 67

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  LA  LA+ +E+  V +LD+DICGPS+P++MGL  EQVHQS SGWSPVFLE+NL
Sbjct: 68  KSTFSAHLAHGLAE-DENTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVFLEDNL 126

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
            VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct: 127 GVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSVVQ 185

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA+++TTPQEVSL DVRKEI FC KV +PIIGVVENM+ F+CPKC K S+IF
Sbjct: 186 YLTAAHIDGAVIITTPQEVSLQDVRKEISFCHKVKLPIIGVVENMSGFICPKCQKESQIF 245

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS----AIDTPSACVDAIQQIVQ 294
           P  +GGAE MC +L +P LG VP+DP + + CD+G S    A D+P+    A + I+Q
Sbjct: 246 PPTTGGAEAMCQDLKIPLLGKVPLDPRIGKSCDKGQSFLVEAPDSPATV--AYRSIIQ 301

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Bos taurus (taxid: 9913)

>sp|Q7PV10|NUBP1_ANOGA Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Anopheles gambiae GN=AGAP011997 PE=3 SV=3

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 236/298 (79%), Gaps = 7/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+S+ AGK SAC GCPNQ +C++G  K  DP I LV+  L++V++K+LVLSGKGGVG
Sbjct: 15  CPGTQSDDAGKASACAGCPNQQLCATGP-KGPDPAIALVRQKLADVRNKLLVLSGKGGVG 73

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T LL+R +A  N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct: 74  KSTVTALLSRAMAHRNPDENFGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 133

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct: 134 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSATT 192

Query: 181 YLKGLP-DIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239
           +LKG     GA++VTTPQEV+LLDVRKEI FC+K+ IP++GV+ENM+ FVCPKCT  + I
Sbjct: 193 FLKGTDGSWGAVLVTTPQEVALLDVRKEISFCKKLAIPVVGVIENMSAFVCPKCTTETRI 252

Query: 240 FPK--DSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDT--PSACVDAIQQIV 293
           FP   D GGAE+MC E+ VP+LG +P+DP +T+ CDEG   I     S  V A+++IV
Sbjct: 253 FPARTDGGGAEQMCIEMEVPYLGQLPLDPRLTKCCDEGKDFITEFPTSPAVVALEEIV 310

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Anopheles gambiae (taxid: 7165)

>sp|B0X4N8|NUBP1_CULQU Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Culex quinquefasciatus GN=CPIJ014142 PE=3 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/297 (64%), Positives = 234/297 (78%), Gaps = 7/297 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT SESAGK SAC GCPNQ IC++G  K  DP I LVK  L  V++KVLVLSGKGGVG
Sbjct: 19  CPGTASESAGKASACAGCPNQQICATGP-KGPDPSIALVKEKLREVRNKVLVLSGKGGVG 77

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T LL+R +A+ N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct: 78  KSTVTALLSRAMAQHNPDRNFGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 137

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct: 138 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSAAT 196

Query: 181 YLKGLPD--IGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE 238
           +LK + D   GA++VTTPQEV+LLDVRKEI FC+K+ IP++GVVENM+ FVCPKC   S+
Sbjct: 197 FLK-VTDGRWGAVLVTTPQEVALLDVRKEITFCKKMAIPVVGVVENMSVFVCPKCATESD 255

Query: 239 IFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS--AIDTPSACVDAIQQIV 293
           IFP  +GGAE+MCA++ V +LG +P+DP + + CDEG    A    S  V A++ IV
Sbjct: 256 IFPAKTGGAERMCADMEVRYLGKLPLDPRLAKCCDEGKDFLAEHAGSPTVTALKGIV 312

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Culex quinquefasciatus (taxid: 7176)

>sp|A7RUD5|NUBP1_NEMVE Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Nematostella vectensis GN=v1g236650 PE=3 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/300 (63%), Positives = 233/300 (77%), Gaps = 8/300 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGTES+ +GKVSACQGCPNQ IC+S      DP +  +K  LS+VKHK+LVLSGKGGVG
Sbjct: 12  CPGTESDKSGKVSACQGCPNQQICASSKPAPPDPDLGKIKERLSSVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTFT  LA  LA ++E   V VLD+DICGPS+P + GL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFTAHLAHGLA-ADEDRQVAVLDIDICGPSIPTVFGLQGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
            VMS+GFLL  P DAVIWRGPKKN +I+QFL +VDWG+  ++L++DTPPGTSDEHLS++Q
Sbjct: 131 GVMSVGFLLAKPTDAVIWRGPKKNGLIKQFLRDVDWGDA-DFLVVDTPPGTSDEHLSIIQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA+VVTTPQEVSLLDVRKEI FC+KV +P+IGVVENM+ FVCP C K S+IF
Sbjct: 190 YLNQTEVDGAVVVTTPQEVSLLDVRKEISFCKKVRLPVIGVVENMSVFVCPNCKKESQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTP--SACVDAIQQIVQ 294
           P  +GGAEKM  E+ VPFLG +P+DP + R CDEG S +    D+P  S+  D I++IV+
Sbjct: 250 PPTTGGAEKMAVEMKVPFLGRIPLDPRIGRACDEGKSFLSEIPDSPATSSYKDIIEKIVK 309

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Nematostella vectensis (taxid: 45351)

>sp|P53384|NUBP1_HUMAN Cytosolic Fe-S cluster assembly factor NUBP1 OS=Homo sapiens GN=NUBP1 PE=1 SV=2

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/296 (62%), Positives = 235/296 (79%), Gaps = 4/296 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPG +S  AG+ ++CQGCPNQ +C+SGA  + D  IE +K  +  VKHK+LVLSGKGGVG
Sbjct: 8   CPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVG 67

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  LA  LA+ +E+  + +LD+DICGPS+P++MGL  EQVHQS SGWSPV++E+NL
Sbjct: 68  KSTFSAHLAHGLAE-DENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNL 126

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
            VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+V+
Sbjct: 127 GVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSVVR 185

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA+++TTPQEVSL DVRKEI+FCRKV +PIIGVVENM+ F+CPKC K S+IF
Sbjct: 186 YLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIF 245

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS-AIDTP-SACVDAIQQIVQ 294
           P  +GGAE MC +L VP LG VP+DPL+ ++CD+G S  ID P S    A + I+Q
Sbjct: 246 PPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQ 301

Implicated in the regulation of centrosome duplication (By similarity). Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. May bind and transfer 2 labile 4Fe-4S clusters to target apoproteins.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
253314422	313	nucleotide binding protein 1 [Acyrthosip	1.0	0.939	0.672	1e-115
332026387	323	Cytosolic Fe-S cluster assembly factor N	0.989	0.900	0.681	1e-113
307185296	327	Nucleotide-binding protein 1 [Camponotus	0.996	0.896	0.665	1e-113
91078422	319	PREDICTED: similar to nucleotide binding	0.989	0.912	0.688	1e-112
156538843	315	PREDICTED: cytosolic Fe-S cluster assemb	0.996	0.930	0.676	1e-112
307206208	319	Nucleotide-binding protein 1 [Harpegnath	0.996	0.918	0.668	1e-112
322794801	324	hypothetical protein SINV_07936 [Solenop	0.989	0.898	0.677	1e-111
242012691	317	Nucleotide-binding protein, putative [Pe	0.993	0.921	0.655	1e-111
62955037	321	cytosolic Fe-S cluster assembly factor n	0.986	0.903	0.651	1e-111
257096598	321	RecName: Full=Cytosolic Fe-S cluster ass	0.986	0.903	0.651	1e-111

>gi|253314422|ref|NP_001156584.1| nucleotide binding protein 1 [Acyrthosiphon pisum] gi|239792212|dbj|BAH72473.1| ACYPI008089 [Acyrthosiphon pisum]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/296 (67%), Positives = 246/296 (83%), Gaps = 2/296 (0%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+S SAG+VSACQGCPNQ+IC+SG  +  DP +E++K  LS+VK+K+LVLSGKGGVG
Sbjct: 9   CPGTDSSSAGQVSACQGCPNQNICASGVTQLPDPALEVLKHRLSSVKYKILVLSGKGGVG 68

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTFT+LLARVLA  NE  ++GVLD+DICGPS+P + G+ +E +HQS SGWSPVF+EENL
Sbjct: 69  KSTFTSLLARVLANENEQKNIGVLDVDICGPSLPLVFGVQDENIHQSGSGWSPVFVEENL 128

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MS+GFLL S DDAVIWRGPKKN MI+QFL+EVDWG+ L+YL++DTPPGTSDEHLSLVQ
Sbjct: 129 SIMSVGFLLESKDDAVIWRGPKKNAMIKQFLTEVDWGDTLDYLIVDTPPGTSDEHLSLVQ 188

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           +LK   +  A+VVTTPQEVSLLDVRKE+DF RKV +P++GVVENM+ FVCPKC   SEIF
Sbjct: 189 FLKSTDNFSAVVVTTPQEVSLLDVRKELDFARKVGLPVLGVVENMSAFVCPKCKVTSEIF 248

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIVQ 294
           PK++GGA +M  E+ VPFLGSVP+DP + + CDEG + I     S  V AI+ IV+
Sbjct: 249 PKNTGGAAQMSYEMGVPFLGSVPLDPSLGQCCDEGVNFIQKYARSPTVVAIKNIVE 304

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026387|gb|EGI66516.1| Cytosolic Fe-S cluster assembly factor NUBP1-like protein [Acromyrmex echinatior]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/298 (68%), Positives = 245/298 (82%), Gaps = 7/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+SESAGK SAC GCPNQS+CSSGA K  DPGI LVK  L++V++K+LVLSGKGGVG
Sbjct: 12  CPGTQSESAGKASACAGCPNQSLCSSGATKQSDPGIALVKERLTSVRNKLLVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T+LL+R LA +N   +VGVLD+DICGPS PR++G L EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTVTSLLSRCLATNNPDKNVGVLDIDICGPSQPRVLGALGEQVHQSGSGWSPVYIEDNL 131

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL+SP DA+IWRGPKKN MIRQFLSEVDWG+ L+YL++DTPPGTSDEHLS   
Sbjct: 132 SLMSIGFLLSSPSDAIIWRGPKKNGMIRQFLSEVDWGS-LDYLILDTPPGTSDEHLSATS 190

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLKG    GAI+VTTP +V+LLDVRKEIDFCRKVNIPI+GVVENM+ FVCPKC   +EIF
Sbjct: 191 YLKGAGITGAIIVTTPPQVALLDVRKEIDFCRKVNIPILGVVENMSIFVCPKCKNTAEIF 250

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPSACVDAIQQIVQ 294
           P  SGGA  M  EL+V FLGS+P+DPL+ R CDEG + +    D+P+  V+ + +I +
Sbjct: 251 PALSGGARTMSNELNVEFLGSIPLDPLLARCCDEGKNFLTEIPDSPT--VNVLNEICK 306

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185296|gb|EFN71396.1| Nucleotide-binding protein 1 [Camponotus floridanus]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/296 (66%), Positives = 245/296 (82%), Gaps = 3/296 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+SE+AGK SAC GCPNQS+CSSGAAK  DPGI LV   LS+V++K+LVLSGKGGVG
Sbjct: 12  CPGTQSENAGKASACAGCPNQSLCSSGAAKQPDPGIALVTERLSSVRNKLLVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T+L++R LA +N   ++GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTVTSLISRCLAANNSDRNIGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 131

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL+SP DAVIWRGPKKN MIRQFLSEVDWG  L+YL++DTPPGTSDEHLS   
Sbjct: 132 SLMSIGFLLSSPSDAVIWRGPKKNGMIRQFLSEVDWGT-LDYLILDTPPGTSDEHLSATS 190

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLK     GAI++TTP +V+LLDVRKEI+FC+KVNIPI+GVVENM+TFVCPKC   +EIF
Sbjct: 191 YLKDTGITGAIIITTPPQVALLDVRKEINFCQKVNIPILGVVENMSTFVCPKCKNTAEIF 250

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIVQ 294
           P  +GGA+ M  EL++ FLGS+P+DPL+ R CDEG + +   + S  V+A+ +I +
Sbjct: 251 PASTGGAQAMSKELNIEFLGSIPLDPLLARCCDEGKNFLTEMSNSPTVNALNEICK 306

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078422|ref|XP_974710.1| PREDICTED: similar to nucleotide binding protein 2 (nbp 2) [Tribolium castaneum] gi|270004003|gb|EFA00451.1| hypothetical protein TcasGA2_TC003307 [Tribolium castaneum]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/295 (68%), Positives = 239/295 (81%), Gaps = 4/295 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGTES +AGK SAC GCPNQ IC+SG  K  DPGI+LVK  L  V++K+L+LSGKGGVG
Sbjct: 15  CPGTESANAGKASACAGCPNQQICASGP-KGPDPGIQLVKERLEQVRNKILILSGKGGVG 73

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T LL R LA +++  +V VLD+DICGPS PR++G LNEQVHQS SGWSPV++++NL
Sbjct: 74  KSTVTALLGRSLAAADKERNVAVLDIDICGPSQPRVLGALNEQVHQSGSGWSPVYVDDNL 133

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           SVMSIGFLL+SPDDAVIWRGPKKN MIRQFLSEVDWG  L+YLL+DTPPGTSDEHLS   
Sbjct: 134 SVMSIGFLLSSPDDAVIWRGPKKNGMIRQFLSEVDWGT-LDYLLMDTPPGTSDEHLSAST 192

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL      GA++VTTPQEV+LLDVRKEIDFCRKVNI I+GVVENM+ FVCP C + SEIF
Sbjct: 193 YLSQAGLTGAVIVTTPQEVALLDVRKEIDFCRKVNIRILGVVENMSIFVCPCCKRLSEIF 252

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-DTP-SACVDAIQQIV 293
           P  +GGA+KMC +L VPFLGS+P+DP + R+CDEG   + D P S  VDA+  IV
Sbjct: 253 PAATGGAKKMCEDLKVPFLGSLPLDPTIARYCDEGRDFVGDLPNSPAVDALNGIV 307

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538843|ref|XP_001608001.1| PREDICTED: cytosolic Fe-S cluster assembly factor NUBP1 homolog [Nasonia vitripennis]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/300 (67%), Positives = 245/300 (81%), Gaps = 7/300 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+SE AGKVSAC GCPNQ+ICSSGA K  DPGI LVK  LS+VK+K+L+LSGKGGVG
Sbjct: 12  CPGTQSEDAGKVSACAGCPNQNICSSGATKLPDPGIALVKERLSSVKNKLLILSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T+L++R LA  N   +V VLD+DICGPS PR++G L EQVHQSASGWSPV++E+NL
Sbjct: 72  KSTVTSLVSRALAAENPDRNVAVLDIDICGPSQPRVLGALGEQVHQSASGWSPVYIEDNL 131

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLLNS  DAVIWRGPKKN MI+QFLSEVDWG  L+YL++DTPPGTSDEHLS   
Sbjct: 132 SLMSIGFLLNSSSDAVIWRGPKKNGMIKQFLSEVDWGT-LDYLILDTPPGTSDEHLSAAS 190

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLK     GAI+VTTPQEV+LLDVRKEIDFC+KV+IPI+GVVENM+ FVCPKC   +EIF
Sbjct: 191 YLKEAGITGAIIVTTPQEVALLDVRKEIDFCKKVDIPILGVVENMSIFVCPKCKTSAEIF 250

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPS--ACVDAIQQIVQ 294
           P  +GGA+KM  +L+V FLG++P+DPL+ R CDEG + +    D+P+  A    +Q+IVQ
Sbjct: 251 PALTGGAKKMSDDLNVEFLGTLPLDPLLARCCDEGKNFLIEMPDSPTIVALNTIVQKIVQ 310

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206208|gb|EFN84288.1| Nucleotide-binding protein 1 [Harpegnathos saltator]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/296 (66%), Positives = 245/296 (82%), Gaps = 3/296 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+SESAGK SAC GCPNQS+CSSGA +  DPGI LVK  LS V++K+LVLSGKGGVG
Sbjct: 12  CPGTQSESAGKASACAGCPNQSLCSSGATRQPDPGIALVKEKLSLVQNKLLVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           K+T T+L++R LA +N   +VG+LD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct: 72  KTTVTSLVSRCLAANNLDKNVGILDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 131

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL SP+DAVIWRGPKKN MIRQFL+EVDWG+ L+YL++DTPPGTSDEHLS   
Sbjct: 132 SLMSIGFLLGSPNDAVIWRGPKKNGMIRQFLTEVDWGS-LDYLILDTPPGTSDEHLSATS 190

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLKG    GAI++TTP +++LLDVRKEIDFCRKVNIPI+GVVENM+ FVCPKC   +EIF
Sbjct: 191 YLKGAGITGAIIITTPPQIALLDVRKEIDFCRKVNIPILGVVENMSIFVCPKCKNTAEIF 250

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-DTP-SACVDAIQQIVQ 294
           P  +GGA+ M  EL+V FLGS+P+DPL+ R CDEG + + + P S  V+A+  I +
Sbjct: 251 PASTGGAQMMSKELNVEFLGSIPLDPLLARCCDEGKNFLTEIPNSPTVNALNNICE 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794801|gb|EFZ17748.1| hypothetical protein SINV_07936 [Solenopsis invicta]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/298 (67%), Positives = 241/298 (80%), Gaps = 7/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT+SESAGK SAC GCPNQS+CSSGA K  DP I LVK  LS+V++K+LVLSGKGGVG
Sbjct: 12  CPGTQSESAGKASACAGCPNQSLCSSGATKQPDPYIALVKEKLSSVRNKLLVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KST T+LL+R LA +N   +VGVLD+DICGPS PR++G L EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTITSLLSRCLAGNNPDRNVGVLDIDICGPSQPRVLGALGEQVHQSGSGWSPVYIEDNL 131

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           S+MSIGFLL+SP DAVIWRGPKKN MI QFLSEVDWG+ L+YL++DTPPGTSDEHLS   
Sbjct: 132 SLMSIGFLLSSPSDAVIWRGPKKNGMIAQFLSEVDWGS-LDYLILDTPPGTSDEHLSATS 190

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLK     GAI+VTTP +V+LLDVRKEIDFCRKVNIPI+GV+ENM+ FVCPKC   +EIF
Sbjct: 191 YLKSAGITGAIIVTTPPQVALLDVRKEIDFCRKVNIPILGVIENMSIFVCPKCKNTAEIF 250

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG----TSAIDTPSACVDAIQQIVQ 294
           P  +GGA  M  EL+V FLGS+P+DPL+ R CDEG    T   D+P+  V A+ +I +
Sbjct: 251 PPSTGGARAMSNELNVEFLGSIPLDPLLARCCDEGKNFLTEMPDSPT--VTALNEICK 306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012691|ref|XP_002427061.1| Nucleotide-binding protein, putative [Pediculus humanus corporis] gi|212511319|gb|EEB14323.1| Nucleotide-binding protein, putative [Pediculus humanus corporis]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/296 (65%), Positives = 237/296 (80%), Gaps = 4/296 (1%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPG  S  AGKVSAC+GCPNQ+ICSSG  K+ DPGI LVK  L  V+HK+L+LSGKGGVG
Sbjct: 11  CPGVNSNLAGKVSACEGCPNQNICSSGVTKT-DPGIALVKQRLDEVRHKILILSGKGGVG 69

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTFT+LL R LA S ++ ++G+ D+DICGPS+PRMMG L E+VH S SGWSP+F+E+NL
Sbjct: 70  KSTFTSLLGRYLANSLDTKNIGICDIDICGPSIPRMMGTLQEEVHNSGSGWSPIFVEDNL 129

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           SVMSIGFLL  P++AVIWRGPKKN MIRQFLS+VDWG  LEYLL+DTPPGTSDEHLS+  
Sbjct: 130 SVMSIGFLLGRPNEAVIWRGPKKNAMIRQFLSDVDWGQ-LEYLLVDTPPGTSDEHLSVFN 188

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YLK     GA+++TTP+EVSLLDVRKEIDFC+KVNIPI+GVVENM+ F CP C+K SEIF
Sbjct: 189 YLKHTNLSGALIITTPEEVSLLDVRKEIDFCKKVNIPILGVVENMSCFTCPNCSKSSEIF 248

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIVQ 294
              +GGA KMC++L+VPFLG +P+DP + R CDEG   +     S+  +A  +I +
Sbjct: 249 AAKTGGALKMCSDLNVPFLGKLPMDPKLARACDEGKDFLTEFKSSSAAEAFTEIAK 304

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62955037|ref|NP_001017538.1| cytosolic Fe-S cluster assembly factor nubp1 [Danio rerio] gi|62531231|gb|AAH93447.1| Nucleotide binding protein 1 (MinD homolog, E. coli) [Danio rerio]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/298 (65%), Positives = 244/298 (81%), Gaps = 8/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT S+ AGK SACQGCPNQSIC+SGA K+ DP IE +K  +++VKHK+LVLSGKGGVG
Sbjct: 12  CPGTSSDQAGKSSACQGCPNQSICASGATKAPDPAIEEIKQKMTSVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  L+  LA S+ S +V +LD+DICGPS+P++MGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLSHALA-SDSSKEVALLDVDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMSIGFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct: 131 AVMSIGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSIVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL G    GA+++TTPQEVSL DVRKEI FC+KVN+PI+GV+ENM+ FVCPKC   S+IF
Sbjct: 190 YLSGAGIDGAVIITTPQEVSLQDVRKEIRFCKKVNLPILGVIENMSGFVCPKCKNTSQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPSACVDAIQQIVQ 294
           P  +GGA++MC EL++P LG +P+DP + + CDEG S +    D+P+A   A Q IVQ
Sbjct: 250 PPTTGGAQRMCEELNLPLLGRIPLDPRIGKSCDEGKSFLTEVPDSPAAA--AYQSIVQ 305

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|257096598|sp|Q6P298.2|NUBP1_DANRE RecName: Full=Cytosolic Fe-S cluster assembly factor nubp1; AltName: Full=Nucleotide-binding protein 1; Short=NBP 1

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/298 (65%), Positives = 244/298 (81%), Gaps = 8/298 (2%)

Query: 1   CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG 60
           CPGT S+ AGK SACQGCPNQSIC+SGA K+ DP IE +K  +++VKHK+LVLSGKGGVG
Sbjct: 12  CPGTSSDQAGKSSACQGCPNQSICASGATKAPDPAIEEIKQKMTSVKHKILVLSGKGGVG 71

Query: 61  KSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
           KSTF+  L+  LA S+ S +V +LD+DICGPS+P++MGL  EQVHQS SGWSPV++E+NL
Sbjct: 72  KSTFSAHLSHALA-SDSSKEVALLDVDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNL 130

Query: 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
           +VMSIGFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct: 131 AVMSIGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSIVQ 189

Query: 181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
           YL G    GA+++TTPQEVSL DVRKEI FC+KVN+PI+GV+ENM+ FVCPKC   S+IF
Sbjct: 190 YLSGAGIDGAVIITTPQEVSLQDVRKEIRFCKKVNLPILGVIENMSGFVCPKCKNTSQIF 249

Query: 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPSACVDAIQQIVQ 294
           P  +GGA++MC EL++P LG +P+DP + + CDEG S +    D+P+A   A Q IVQ
Sbjct: 250 PPTTGGAQRMCEELNLPLLGRIPLDPRIGKSCDEGKSFLTEVPDSPAAA--AYQSIVQ 305

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
ZFIN|ZDB-GENE-050417-471	321	nubp1 "nucleotide binding prot	0.986	0.903	0.597	2.6e-95
UNIPROTKB|Q16T79	318	AAEL010360 "Cytosolic Fe-S clu	0.989	0.915	0.601	3.4e-93
UNIPROTKB|Q7PV10	325	AGAP011997 "Cytosolic Fe-S clu	0.989	0.895	0.587	7e-93
UNIPROTKB|Q3KQF0	315	nubp1-a "Cytosolic Fe-S cluste	0.993	0.926	0.597	9e-93
UNIPROTKB|Q5I050	315	nubp1-b "Cytosolic Fe-S cluste	0.935	0.873	0.620	2.1e-91
UNIPROTKB|Q5EB25	320	nubp1 "Cytosolic Fe-S cluster	0.935	0.859	0.620	2.7e-91
UNIPROTKB|I3LTH4	320	NUBP1 "Uncharacterized protein	0.993	0.912	0.577	3.5e-91
UNIPROTKB|B0X4N8	334	CPIJ014142 "Cytosolic Fe-S clu	0.986	0.868	0.592	3.5e-91
UNIPROTKB|Q24K00	320	NUBP1 "Cytosolic Fe-S cluster	0.993	0.912	0.570	5.7e-91
UNIPROTKB|E2R120	320	NUBP1 "Uncharacterized protein	0.993	0.912	0.577	1.5e-90

ZFIN|ZDB-GENE-050417-471 nubp1 "nucleotide binding protein 1 (MinD homolog, E. coli)" [Danio rerio (taxid:7955)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 178/298 (59%), Positives = 227/298 (76%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT S+ AGK SACQGCPNQSIC+SGA K+ DP IE +K  +++               
Sbjct:    12 CPGTSSDQAGKSSACQGCPNQSICASGATKAPDPAIEEIKQKMTSVKHKILVLSGKGGVG 71

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  L+  LA S+ S +V +LD+DICGPS+P++MGL  EQVHQS SGWSPV++E+NL
Sbjct:    72 KSTFSAHLSHALA-SDSSKEVALLDVDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNL 130

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             +VMSIGFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct:   131 AVMSIGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSIVQ 189

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL G    GA+++TTPQEVSL DVRKEI FC+KVN+PI+GV+ENM+ FVCPKC   S+IF
Sbjct:   190 YLSGAGIDGAVIITTPQEVSLQDVRKEIRFCKKVNLPILGVIENMSGFVCPKCKNTSQIF 249

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI----DTPSACVDAIQQIVQ 294
             P  +GGA++MC EL++P LG +P+DP + + CDEG S +    D+P+A   A Q IVQ
Sbjct:   250 PPTTGGAQRMCEELNLPLLGRIPLDPRIGKSCDEGKSFLTEVPDSPAAA--AYQSIVQ 305

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q16T79 AAEL010360 "Cytosolic Fe-S cluster assembly factor NUBP1 homolog" [Aedes aegypti (taxid:7159)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 178/296 (60%), Positives = 218/296 (73%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGTESE+AGK SAC GCPNQ IC++G  K  DP I LVK  L                 
Sbjct:    17 CPGTESENAGKASACAGCPNQQICATGP-KGPDPSIALVKEKLKEVRNKILVLSGKGGVG 75

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               T T LL+R +A+ N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct:    76 KSTVTALLSRAMAQLNPERNYGVLDVDICGPSQPRVLGVLGEQVHQSGSGWSPVYVEDNL 135

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct:   136 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSATT 194

Query:   181 YLKGLP-DIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239
             +LK    + GA++VTTPQEV+LLDVRKEI FC+K+ IP++GVVENM+ FVCPKCT  S+I
Sbjct:   195 FLKETDGNWGAVLVTTPQEVALLDVRKEITFCKKMGIPVVGVVENMSVFVCPKCTTESDI 254

Query:   240 FPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIV 293
             FP  +GGAEKMC E+ V +LG +P+DP + + CDEG   I   + S  V A+ QIV
Sbjct:   255 FPAKTGGAEKMCEEMEVAYLGKLPLDPRLAKCCDEGKDFITEHSKSPTVIALHQIV 310

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|Q7PV10 AGAP011997 "Cytosolic Fe-S cluster assembly factor NUBP1 homolog" [Anopheles gambiae (taxid:7165)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 175/298 (58%), Positives = 221/298 (74%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT+S+ AGK SAC GCPNQ +C++G  K  DP I LV+  L++               
Sbjct:    15 CPGTQSDDAGKASACAGCPNQQLCATGP-KGPDPAIALVRQKLADVRNKLLVLSGKGGVG 73

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               T T LL+R +A  N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct:    74 KSTVTALLSRAMAHRNPDENFGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 133

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct:   134 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSATT 192

Query:   181 YLKGLPDI-GAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239
             +LKG     GA++VTTPQEV+LLDVRKEI FC+K+ IP++GV+ENM+ FVCPKCT  + I
Sbjct:   193 FLKGTDGSWGAVLVTTPQEVALLDVRKEISFCKKLAIPVVGVIENMSAFVCPKCTTETRI 252

Query:   240 FPK--DSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-DTP-SACVDAIQQIV 293
             FP   D GGAE+MC E+ VP+LG +P+DP +T+ CDEG   I + P S  V A+++IV
Sbjct:   253 FPARTDGGGAEQMCIEMEVPYLGQLPLDPRLTKCCDEGKDFITEFPTSPAVVALEEIV 310

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|Q3KQF0 nubp1-a "Cytosolic Fe-S cluster assembly factor nubp1-A" [Xenopus laevis (taxid:8355)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 177/296 (59%), Positives = 221/296 (74%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT+S  AGK SACQGCPNQSIC+SGAA   DP IE +K  +S                
Sbjct:    12 CPGTDSTEAGKSSACQGCPNQSICASGAAAGPDPAIEEIKEKMSLVKHKILVLSGKGGVG 71

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +E  +V +LD+DICGPS+P+MMGL  EQVHQS SGWSPV++E+NL
Sbjct:    72 KSTFSAHLAHGLAQ-DEGKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG+ ++YL++DTPPGTSDEHLS+VQ
Sbjct:   131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGD-VDYLIVDTPPGTSDEHLSVVQ 189

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL      GA+++TTPQEVSL DVRKEI+FCRKV +PIIGVVENM+ F+CPKC   S+IF
Sbjct:   190 YLSAAGIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKNESQIF 249

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-DTP-SACVDAIQQIVQ 294
             P  +GGAEKMC +LSV  LG VP+DP + + CD G S   + P S    + ++I+Q
Sbjct:   250 PPTTGGAEKMCTDLSVSLLGKVPLDPNIGKSCDTGKSFFTEIPDSPATLSYRKIIQ 305

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|Q5I050 nubp1-b "Cytosolic Fe-S cluster assembly factor nubp1-B" [Xenopus laevis (taxid:8355)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 172/277 (62%), Positives = 209/277 (75%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT S  AGK SACQGCPNQSIC+S A  + DP IE +K  +S                
Sbjct:    12 CPGTGSTEAGKSSACQGCPNQSICASAATSAPDPAIEEIKEKMSLVKHKILVLSGKGGVG 71

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +E  +V +LD+DICGPS+PRMMGL  EQVHQS SGWSPV++E+NL
Sbjct:    72 KSTFSAHLAHGLAQ-DEGKEVALLDVDICGPSIPRMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct:   131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSVVQ 189

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL      GA++VTTPQEVSL DVRKEI+FCRKV +PIIGVVENM+ F+CPKC   S+IF
Sbjct:   190 YLSAAGIDGAVIVTTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCENESQIF 249

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
             P  +GGAEKMC +L+V  LG VP+DP + + CD G S
Sbjct:   250 PPTTGGAEKMCTDLNVSLLGKVPLDPNIGKSCDTGKS 286

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|Q5EB25 nubp1 "Cytosolic Fe-S cluster assembly factor nubp1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 172/277 (62%), Positives = 209/277 (75%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT S  AGK SACQGCPNQSIC+SG     DP IE +K  LS+               
Sbjct:    12 CPGTGSTEAGKSSACQGCPNQSICASGTMSGPDPAIEEIKEKLSSVKHKILVLSGKGGVG 71

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +ES +V +LD+DICGPS+P+MMGL  EQVHQS SGWSPV++E+NL
Sbjct:    72 KSTFSAHLAHGLAQ-DESKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNL 130

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             +VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL+IDTPPGTSDEHLS+VQ
Sbjct:   131 AVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIIDTPPGTSDEHLSVVQ 189

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL      GA+++TTPQEVSL DVRKEI+FC KV +PIIGVVENM+ F+CPKC   S+IF
Sbjct:   190 YLSVAGIDGAVIITTPQEVSLQDVRKEINFCHKVKLPIIGVVENMSGFICPKCKNESQIF 249

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
             P  +GGAEKMC +L+V  LG VP+DP + + CD G S
Sbjct:   250 PPTTGGAEKMCTDLNVSLLGKVPLDPNIGKSCDTGKS 286

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|I3LTH4 NUBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 171/296 (57%), Positives = 216/296 (72%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT S  AG+ ++CQGCPNQ +C+SGA  + DP IE +K  +                 
Sbjct:     8 CPGTGSAQAGRGASCQGCPNQRLCASGAGAAPDPAIEEIKEKMKTVKHKILVLSGKGGVG 67

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +E+  V +LD+DICGPS+P++MGL  EQVHQS SGWSPVFLE+NL
Sbjct:    68 KSTFSAHLAHGLAE-DENTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVFLEDNL 126

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
              VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  L+YL++DTPPGTSDEHLS VQ
Sbjct:   127 GVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-LDYLIVDTPPGTSDEHLSAVQ 185

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL G    GA+++TTPQEVSL DVRKEI FC KV +PIIGVVENM++F+CP+C K S+IF
Sbjct:   186 YLAGAHIDGAVLITTPQEVSLQDVRKEISFCHKVKLPIIGVVENMSSFLCPRCQKESQIF 245

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS-AIDTP-SACVDAIQQIVQ 294
             P  +GGAE MC +L +P LG VP+DP + + CD+G S  ++ P S    A + I+Q
Sbjct:   246 PPTTGGAEVMCQDLKIPLLGKVPLDPRIAKSCDKGQSFLVEAPDSPATLAYRSIIQ 301

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B0X4N8 CPIJ014142 "Cytosolic Fe-S cluster assembly factor NUBP1 homolog" [Culex quinquefasciatus (taxid:7176)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 176/297 (59%), Positives = 217/297 (73%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT SESAGK SAC GCPNQ IC++G  K  DP I LVK  L                 
Sbjct:    19 CPGTASESAGKASACAGCPNQQICATGP-KGPDPSIALVKEKLREVRNKVLVLSGKGGVG 77

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               T T LL+R +A+ N   + GVLD+DICGPS PR++G+L EQVHQS SGWSPV++E+NL
Sbjct:    78 KSTVTALLSRAMAQHNPDRNFGVLDIDICGPSQPRVLGVLGEQVHQSGSGWSPVYIEDNL 137

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
             S+MSIGFLL SPDDA+IWRGPKKN MIRQFL+EVDWG  L+YL++DTPPGTSDEHLS   
Sbjct:   138 SLMSIGFLLGSPDDAIIWRGPKKNGMIRQFLTEVDWGQ-LDYLVLDTPPGTSDEHLSAAT 196

Query:   181 YLKGLPD--IGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE 238
             +LK + D   GA++VTTPQEV+LLDVRKEI FC+K+ IP++GVVENM+ FVCPKC   S+
Sbjct:   197 FLK-VTDGRWGAVLVTTPQEVALLDVRKEITFCKKMAIPVVGVVENMSVFVCPKCATESD 255

Query:   239 IFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS--AIDTPSACVDAIQQIV 293
             IFP  +GGAE+MCA++ V +LG +P+DP + + CDEG    A    S  V A++ IV
Sbjct:   256 IFPAKTGGAERMCADMEVRYLGKLPLDPRLAKCCDEGKDFLAEHAGSPTVTALKGIV 312

GO:0005829 "cytosol" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

UNIPROTKB|Q24K00 NUBP1 "Cytosolic Fe-S cluster assembly factor NUBP1" [Bos taurus (taxid:9913)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 169/296 (57%), Positives = 215/296 (72%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPG +S  AG+ ++CQGCPNQ +C+SGA  + DP IE +K  +                 
Sbjct:     8 CPGADSAQAGRGASCQGCPNQRLCASGAGAAADPAIEEIKEKMKTVKHKILVLSGKGGVG 67

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +E+  V +LD+DICGPS+P++MGL  EQVHQS SGWSPVFLE+NL
Sbjct:    68 KSTFSAHLAHGLAE-DENTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVFLEDNL 126

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
              VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS+VQ
Sbjct:   127 GVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSVVQ 185

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL      GA+++TTPQEVSL DVRKEI FC KV +PIIGVVENM+ F+CPKC K S+IF
Sbjct:   186 YLTAAHIDGAVIITTPQEVSLQDVRKEISFCHKVKLPIIGVVENMSGFICPKCQKESQIF 245

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS-AIDTP-SACVDAIQQIVQ 294
             P  +GGAE MC +L +P LG VP+DP + + CD+G S  ++ P S    A + I+Q
Sbjct:   246 PPTTGGAEAMCQDLKIPLLGKVPLDPRIGKSCDKGQSFLVEAPDSPATVAYRSIIQ 301

GO:0005829 "cytosol" evidence=ISS

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E2R120 NUBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 171/296 (57%), Positives = 214/296 (72%)

Query:     1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNXXXXXXXXXXXXXXX 60
             CPGT S  AG+ ++CQGCPNQ +C+SGA  + DP IE +K  +                 
Sbjct:     8 CPGTGSAQAGRGASCQGCPNQRLCASGAGAAPDPAIEEIKEKMKTVKHKILVLSGKGGVG 67

Query:    61 XXTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL 120
               TF+  LA  LA+ +E+  V +LD+DICGPS+P++MGL  EQVHQS SGWSPVF+E+NL
Sbjct:    68 KSTFSAHLAHGLAE-DENTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVFVEDNL 126

Query:   121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ 180
              VMS+GFLL+SPDDAVIWRGPKKN MI+QFL +VDWG  ++YL++DTPPGTSDEHLS VQ
Sbjct:   127 GVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGE-VDYLIVDTPPGTSDEHLSAVQ 185

Query:   181 YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240
             YL      GA+++TTPQEVSL DVRKEI+FC KV +PIIGVVENM+ F+CPKC K S+IF
Sbjct:   186 YLSSTHIDGAVIITTPQEVSLQDVRKEINFCHKVKLPIIGVVENMSGFICPKCKKESQIF 245

Query:   241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS-AIDTP-SACVDAIQQIVQ 294
             P  +GGAE MC  L +P LG VP+DP + + CD+G S  ID P S    A + I+Q
Sbjct:   246 PPTTGGAEVMCQNLKIPLLGKVPLDPHIGKSCDKGQSFLIDAPDSPATLAYRSIIQ 301

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VJI9	NUBP1_DROME	No assigned EC number	0.6169	0.9897	0.9356	yes	N/A
B3MU92	NUBP1_DROAN	No assigned EC number	0.6237	0.9897	0.9387	N/A	N/A
Q0UI56	NBP35_PHANO	No assigned EC number	0.5637	0.9829	0.85	N/A	N/A
Q29MT7	NUBP1_DROPS	No assigned EC number	0.6338	0.9897	0.9356	yes	N/A
B3NNJ9	NUBP1_DROER	No assigned EC number	0.6169	0.9897	0.9356	N/A	N/A
Q2H317	NBP35_CHAGB	No assigned EC number	0.5824	0.9863	0.8479	N/A	N/A
Q5BBC5	NBP35_EMENI	No assigned EC number	0.5771	0.9829	0.8475	yes	N/A
B4N1C3	NUBP1_DROWI	No assigned EC number	0.6271	0.9897	0.9387	N/A	N/A
Q16T79	NUBP1_AEDAE	No assigned EC number	0.6486	0.9897	0.9150	N/A	N/A
Q24K00	NUBP1_BOVIN	No assigned EC number	0.6241	0.9863	0.9062	yes	N/A
Q7PV10	NUBP1_ANOGA	No assigned EC number	0.6308	0.9897	0.8953	yes	N/A
Q6C7A6	NBP35_YARLI	No assigned EC number	0.5866	0.9897	0.8558	yes	N/A
P52920	NBP35_YEAST	No assigned EC number	0.5587	0.9455	0.8475	yes	N/A
A8PW87	NUBP1_BRUMA	No assigned EC number	0.5615	0.9285	0.8806	N/A	N/A
Q4WZS2	NBP35_ASPFU	No assigned EC number	0.5945	0.9897	0.8434	yes	N/A
O94442	NBP35_SCHPO	No assigned EC number	0.6	0.9421	0.8738	yes	N/A
A7SE07	NUBP2_NEMVE	No assigned EC number	0.5307	0.8537	0.9296	N/A	N/A
B4G8R5	NUBP1_DROPE	No assigned EC number	0.6338	0.9897	0.9356	N/A	N/A
Q5I050	NUP1B_XENLA	No assigned EC number	0.6787	0.9353	0.8730	N/A	N/A
P53384	NUBP1_HUMAN	No assigned EC number	0.625	0.9931	0.9125	yes	N/A
Q8T2F3	NUBP1_DICDI	No assigned EC number	0.6120	0.9455	0.8825	yes	N/A
Q874M2	NBP35_CANGA	No assigned EC number	0.5785	0.9421	0.8293	yes	N/A
Q93459	NUBP1_CAEEL	No assigned EC number	0.5602	0.9489	0.8913	yes	N/A
B0X4N8	NUBP1_CULQU	No assigned EC number	0.6430	0.9863	0.8682	N/A	N/A
P0CO88	NBP35_CRYNJ	No assigned EC number	0.5733	0.9897	0.8660	yes	N/A
P0CO89	NBP35_CRYNB	No assigned EC number	0.5733	0.9897	0.8660	N/A	N/A
Q5EB25	NUBP1_XENTR	No assigned EC number	0.6787	0.9353	0.8593	yes	N/A
A8WWQ7	NUBP1_CAEBR	No assigned EC number	0.5602	0.9489	0.8913	N/A	N/A
Q3MHY6	NUBP2_BOVIN	No assigned EC number	0.5408	0.8435	0.9151	no	N/A
B4JBI7	NUBP1_DROGR	No assigned EC number	0.6283	0.9897	0.9356	N/A	N/A
B4I540	NUBP1_DROSE	No assigned EC number	0.6203	0.9897	0.9356	N/A	N/A
Q4HZ34	NBP35_GIBZE	No assigned EC number	0.5824	0.9863	0.8479	yes	N/A
A1C7T4	NBP35_ASPCL	No assigned EC number	0.5844	0.9931	0.8488	N/A	N/A
A7RUD5	NUBP1_NEMVE	No assigned EC number	0.6333	0.9931	0.9182	N/A	N/A
Q1EAU8	NBP35_COCIM	No assigned EC number	0.6071	0.9421	0.8099	N/A	N/A
Q6P298	NUBP1_DANRE	No assigned EC number	0.6510	0.9863	0.9034	yes	N/A
Q9R060	NUBP1_MOUSE	No assigned EC number	0.5973	0.9863	0.9062	yes	N/A
Q7S8Z0	NBP35_NEUCR	No assigned EC number	0.5943	0.9455	0.8081	N/A	N/A
Q59MP1	NBP35_CANAL	No assigned EC number	0.5742	0.9965	0.8851	N/A	N/A
Q2UDE2	NBP35_ASPOR	No assigned EC number	0.5574	0.9897	0.8953	yes	N/A
B4Q7F5	NUBP1_DROSI	No assigned EC number	0.6169	0.9897	0.9356	N/A	N/A
Q3KQF0	NUP1A_XENLA	No assigned EC number	0.6823	0.9353	0.8730	N/A	N/A
B4P9A8	NUBP1_DROYA	No assigned EC number	0.6101	0.9897	0.9356	N/A	N/A
B4LUF5	NUBP1_DROVI	No assigned EC number	0.6338	0.9897	0.9387	N/A	N/A
Q6CMN0	NBP35_KLULA	No assigned EC number	0.5607	0.9421	0.8496	yes	N/A
B4KHX1	NUBP1_DROMO	No assigned EC number	0.6101	0.9897	0.9387	N/A	N/A
Q6BTZ6	NBP35_DEBHA	No assigned EC number	0.5943	0.9523	0.8510	yes	N/A
Q754X6	NBP35_ASHGO	No assigned EC number	0.5472	0.9897	0.8738	no	N/A
Q5I0L4	NUBP1_RAT	No assigned EC number	0.5973	0.9863	0.9062	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	294
cd02037	169	cd02037, MRP-like, MRP (Multiple Resistance and pH	8e-88
COG0489	265	COG0489, Mrp, ATPases involved in chromosome parti	7e-70
PRK11670	369	PRK11670, PRK11670, antiporter inner membrane prot	9e-52
pfam10609	81	pfam10609, ParA, ParA/MinD ATPase like	2e-45
COG0455	262	COG0455, flhG, Antiactivator of flagellar biosynth	4e-14
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	5e-13
cd02036	179	cd02036, MinD, Bacterial cell division requires th	7e-12
cd03110	179	cd03110, Fer4_NifH_child, This protein family's fu	4e-11
TIGR01969	251	TIGR01969, minD_arch, cell division ATPase MinD, a	4e-10
COG3640	255	COG3640, CooC, CO dehydrogenase maturation factor	4e-08
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	3e-06
TIGR01968	261	TIGR01968, minD_bact, septum site-determining prot	3e-06
COG1192	259	COG1192, Soj, ATPases involved in chromosome parti	1e-05
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	1e-05
COG2894	272	COG2894, MinD, Septum formation inhibitor-activati	2e-05
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	3e-05
pfam13614	145	pfam13614, AAA_31, AAA domain	4e-05
COG1149	284	COG1149, COG1149, MinD superfamily P-loop ATPase c	4e-05
cd02042	104	cd02042, ParA, ParA and ParB of Caulobacter cresce	1e-04
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	3e-04
CHL00175	281	CHL00175, minD, septum-site determining protein; V	3e-04
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	8e-04
COG1149	284	COG1149, COG1149, MinD superfamily P-loop ATPase c	0.001
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.001
PRK00098	298	PRK00098, PRK00098, GTPase RsgA; Reviewed	0.001
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.001
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	0.002
CHL00067	230	CHL00067, rps2, ribosomal protein S2	0.002
COG0003	322	COG0003, ArsA, Predicted ATPase involved in chromo	0.003
TIGR01007	204	TIGR01007, eps_fam, capsular exopolysaccharide fam	0.003

>gnl|CDD|238994 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

 Score =  258 bits (663), Expect = 8e-88
 Identities = 107/218 (49%), Positives = 127/218 (58%), Gaps = 49/218 (22%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
            + V+SGKGGVGKST    LA  LAK    V  G+LD DI GPS+P+M            
Sbjct: 1   VIAVMSGKGGVGKSTVAVNLALALAKLGYKV--GLLDADIYGPSIPKM------------ 46

Query: 109 SGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168
                                        WRGP K   I+QFL++VDWG  L+YL+ID P
Sbjct: 47  -----------------------------WRGPMKMGAIKQFLTDVDWGE-LDYLVIDMP 76

Query: 169 PGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228
           PGT DEHL+L Q    LP  GA++VTTPQEV+L DVRK ID  +KVNIPI+GVVENM+ F
Sbjct: 77  PGTGDEHLTLAQ---SLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133

Query: 229 VCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266
           VCP C K   IF K  GG EK+  EL VP LG +P+DP
Sbjct: 134 VCPHCGKKIYIFGK--GGGEKLAEELGVPLLGKIPLDP 169

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. Length = 169

>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score =  216 bits (553), Expect = 7e-70
 Identities = 93/242 (38%), Positives = 133/242 (54%), Gaps = 23/242 (9%)

Query: 28  AAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
           A +++   ++  K     VK+ + V SGKGGVGKST    LA  LA+  + V   +LD D
Sbjct: 38  ALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRV--LLLDAD 95

Query: 88  ICGPSMPRMMGLLNEQVHQSAS---GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKN 144
           + GPS+PRM+GL N              PV   + + V+SI  L   P   VI RG   +
Sbjct: 96  LRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILPLGPVP---VIPRGLLGS 152

Query: 145 TMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204
             + Q L +V WG   +Y++IDTPPGT D   +++Q +      G ++VTTP + +L DV
Sbjct: 153 KAMLQLLEDVLWGE-YDYVIIDTPPGTGDADATVLQRIPD----GVVIVTTPGKTALEDV 207

Query: 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264
           +K ID   K  IP++GVVENM+ F+CP+C +         GG EK       P+LGS+P+
Sbjct: 208 KKAIDMLEKAGIPVLGVVENMSYFICPRCGE---------GGGEKYAERYG-PYLGSIPL 257

Query: 265 DP 266
           DP
Sbjct: 258 DP 259

Length = 265

>gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional

 Score =  173 bits (441), Expect = 9e-52
 Identities = 92/221 (41%), Positives = 135/221 (61%), Gaps = 13/221 (5%)

Query: 46  VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH 105
           VK+ + V SGKGGVGKS+    LA  LA   E   VG+LD DI GPS+P M+G  +++  
Sbjct: 106 VKNIIAVSSGKGGVGKSSTAVNLALALAA--EGAKVGILDADIYGPSIPTMLGAEDQR-P 162

Query: 106 QSASG--WSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYL 163
            S  G   +P+ +   L+  SIG+L+   D+A++WRGP  +  + Q L E  W + L+YL
Sbjct: 163 TSPDGTHMAPI-MAHGLATNSIGYLVT-DDNAMVWRGPMASKALMQMLQETLWPD-LDYL 219

Query: 164 LIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVE 223
           ++D PPGT D  L+L Q    +P  GA+VVTTPQ+++L+D +K I    KV +P++G+VE
Sbjct: 220 VLDMPPGTGDIQLTLAQ---NIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE 276

Query: 224 NMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264
           NM+  +C  C     IF   +GGAEK+  +     LG +P+
Sbjct: 277 NMSMHICSNCGHHEPIF--GTGGAEKLAEKYHTQLLGQMPL 315

Length = 369

>gnl|CDD|204531 pfam10609, ParA, ParA/MinD ATPase like

 Score =  147 bits (374), Expect = 2e-45
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 3/84 (3%)

Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
           L+YLLID PPGT DEHL+L Q L   P  GA++VTTPQ+V+LLDVRK ID  +KVN+PI+
Sbjct: 1   LDYLLIDLPPGTGDEHLTLAQSL---PVDGAVIVTTPQDVALLDVRKAIDMFKKVNVPIL 57

Query: 220 GVVENMATFVCPKCTKPSEIFPKD 243
           GVVENM+ FVCP C +   IF K 
Sbjct: 58  GVVENMSYFVCPDCGEKIYIFGKG 81

This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits. Length = 81

>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 65/266 (24%), Positives = 109/266 (40%), Gaps = 51/266 (19%)

Query: 48  HKVLVLSGKGGVGKSTFT-NLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL------L 100
             + V+SGKGGVGK+T T NL A + A   +   V ++D D+   ++  ++G+      L
Sbjct: 3   KVIAVVSGKGGVGKTTITANLGAALAALGGK--VVLLIDADLGLGNLSLLLGVESKPTTL 60

Query: 101 NEQVHQSASGWSPVFLE---ENLSVMSIG-----FLLNSPDDAVIWRGPKKNTMIRQFLS 152
           ++ +   AS    +  E   + L V+  G          P+D           +I++   
Sbjct: 61  HDVLAGEAS-IEDIIYETPQDGLYVLPGGSGLEDLAKLDPED--------LEDVIKELEE 111

Query: 153 EVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCR 212
             D      Y+LIDT  G S + LS +     L     ++VTTP+  S+ D  K I    
Sbjct: 112 LYD------YILIDTGAGLSRDTLSFI-----LSSDELVIVTTPEPTSITDAYKTIKILS 160

Query: 213 KVNIPIIG--VVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270
           K+ + ++G  VV N          +  ++        ++      VP L  +P DP V R
Sbjct: 161 KLGLDLLGRRVVLNRVR----STKEGVDVAALLIQVVKQ------VPVLQVIPFDPEVRR 210

Query: 271 HCDEGTSAIDTPSAC--VDAIQQIVQ 294
              EG   +          AI+++  
Sbjct: 211 ALAEGKPIVLYSPNSKASQAIKELAA 236

Length = 262

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 17/186 (9%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQV 104
           + +   KGGVGK+T    LAR LAK    V     D    +    G     +   L    
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVD 60

Query: 105 HQS----ASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL 160
            Q+    A+   P    + L ++     L + +  +I  G +++ +     S +      
Sbjct: 61  AQALQAIAAAIVPSRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIK--LAY 118

Query: 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIP-II 219
           +Y++ID PPG  +   + +       DI  +V   P+ V++   ++ ++    + +  I+
Sbjct: 119 DYVIIDGPPGLGELTANALV----AADI-LVVPIEPEGVAVEGAQRLLELIEDLGVLDIL 173

Query: 220 GVVENM 225
           GVV N 
Sbjct: 174 GVVLNK 179

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 70/233 (30%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
           ++V SGKGGVGK+T T  L   LA+    V   ++D D+    +                
Sbjct: 2   IVVTSGKGGVGKTTTTANLGTALAQLGYKV--VLIDADL---GLR--------------- 41

Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
                    NL +  I  L N                     +  D   G +Y+LID+P 
Sbjct: 42  ---------NLDL--ILGLENRVV-----------------YTLHDVLAG-DYILIDSPA 72

Query: 170 GTSDE---HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMA 226
           G        ++            A++VTTP+  SL D  +       + I ++GV+ N  
Sbjct: 73  GIERGFITAIAPADE--------ALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV 124

Query: 227 TFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI 279
                          +     E +   L VP LG +P DP V R  + G   +
Sbjct: 125 R----------PDMVEGGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVV 167

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is unkown

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 42/218 (19%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ-S 107
           ++ V+SGKGG GK+T T  LA +L          + D D+  P++   +    E+     
Sbjct: 1   QIAVISGKGGTGKTTVTAALAALLKNVV------LADCDVDAPNLHLFLKPEIEEEEDFI 54

Query: 108 ASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRG--PKKNTMIRQFLSEVDWGNGLEYLLI 165
             G   V   E                  I  G   K  T +R+   E+    G E ++I
Sbjct: 55  VGGKKAVIDPE----------------LCISCGLCGKLVTEVRKHAKEIAKAEGAELIII 98

Query: 166 DTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
           D PPG       ++  L G  D  A++VT P    L D+ + ++  R   IP +GVV N 
Sbjct: 99  DGPPGIG---CPVIASLTGA-DA-ALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVIN- 151

Query: 226 ATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263
                       ++  + +   E  C E  +P LG +P
Sbjct: 152 ----------KYDLNDEIAEEIEDYCEEEGIPILGKIP 179

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. Length = 179

>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 29/234 (12%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV--HQS 107
           + + SGKGG GK+T T  L   LAK  +   V  LD DI   ++  ++G+ ++ V  H  
Sbjct: 3   ITIASGKGGTGKTTITANLGVALAKLGK--KVLALDADITMANLELILGMEDKPVTLHDV 60

Query: 108 ASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNT--MIRQFLSEVDWGNGLEYLLI 165
            +G +   +++ +     G  +      V   G +K     +   L E+   +  ++LLI
Sbjct: 61  LAGEAD--IKDAIYEGPFGVKVIPA--GVSLEGLRKADPDKLEDVLKEI--IDDTDFLLI 114

Query: 166 DTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
           D P G   + ++ +     L     ++V  P+  S+ D  K      K+   I+GVV N 
Sbjct: 115 DAPAGLERDAVTALAAADEL-----LLVVNPEISSITDALKTKIVAEKLGTAILGVVLN- 168

Query: 226 ATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI 279
                 + T+      ++    E +   L VP LG VP DP V R    G   +
Sbjct: 169 ------RVTRDKTELGREE--IETI---LEVPVLGVVPEDPEVRRAAAFGEPVV 211

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251

>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 60/253 (23%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG---------- 98
           K+ + +GKGGVGK+T   LL + L       +V V+D D    ++P  +G          
Sbjct: 2   KIAI-TGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDAD-PDSNLPEALGVEEPMKYLGG 58

Query: 99  ---LLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKK------------ 143
              LL ++      G      +EN  V  +      PD+ ++  G               
Sbjct: 59  KRELLKKRTGAEPGGPPGEMFKENPLVSDL------PDEYLVENGDIDLLVMGKIEEGGE 112

Query: 144 ------NTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197
                 N ++R+ L  +   N  E +++DT  G   EH      ++G+  +  IVV  P 
Sbjct: 113 GCACPMNALLRRLLRHLIL-NRYEVVIVDTEAGI--EHFGR-GTIEGVDLV--IVVVDPS 166

Query: 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVP 257
             SL    +  +   ++ I  I VV N                 ++     ++  EL + 
Sbjct: 167 YKSLRTAERIKELAEELGIKRIFVVLNKVD--------------EEEELLRELAEELGLE 212

Query: 258 FLGSVPIDPLVTR 270
            LG +P DP V  
Sbjct: 213 VLGVIPYDPEVVE 225

Length = 255

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
           + ++GKGGVGK+T   LLAR LA+  + V
Sbjct: 1  KIAITGKGGVGKTTIAALLARYLAEKGKPV 30

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 55/236 (23%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQV 104
           +++ SGKGGVGK+T T  L   LA+  + V     D+G+ +LD+       ++GL N  V
Sbjct: 4   IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDL-------LLGLENRIV 56

Query: 105 HQSASGWSPVFLE---------------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQ 149
           +          +E               +NL ++          DAV     KK  ++ +
Sbjct: 57  YTLVD-----VVEGECRLQQALIKDKRLKNLYLLPAS--QTRDKDAVTPEQMKK--LVNE 107

Query: 150 FLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEID 209
              E D      Y++ID P G      + V      P   AIVVTTP+  ++ D  + I 
Sbjct: 108 LKEEFD------YVIIDCPAGIESGFRNAV-----APADEAIVVTTPEVSAVRDADRVIG 156

Query: 210 FCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265
                 I  I ++ N          +P  +   D    + +   LS+P +G +P D
Sbjct: 157 LLEAKGIEKIHLIVNR--------LRPEMVKKGDMLSVDDVLEILSIPLIGVIPED 204

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model [Cellular processes, Cell division]. Length = 261

>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 52  VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS----------MPRMMGLLN 101
           V + KGGVGK+T    LA  LAK      V ++DLD  G               +  LL+
Sbjct: 7   VANQKGGVGKTTTAVNLAAALAK-RGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLS 65

Query: 102 EQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE 161
               +         + E L ++     L    +  +    K+  ++++ L  V   +  +
Sbjct: 66  GLK-ERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKEL-LLKRLLDPVK--DDYD 121

Query: 162 YLLIDTPPGTSD 173
           Y++IDTPP    
Sbjct: 122 YIIIDTPPSLGV 133

Length = 259

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85
          V+V++GKGGVGK+T    LA  LAK  +   V ++D
Sbjct: 1  VIVVTGKGGVGKTTLAANLAAALAKRGKR--VLLID 34

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|225447 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 75/284 (26%), Positives = 114/284 (40%), Gaps = 84/284 (29%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQV 104
           ++V SGKGGVGK+T T  +   LA+  + V     D+G+ +LD+       +MGL N  V
Sbjct: 5   IVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDL-------IMGLENRIV 57

Query: 105 HQSASGWSPVFLE------------------ENLSVMSIGFLL----NSPDDAVIWRGPK 142
           +          ++                  ENL      FLL        DA+   G K
Sbjct: 58  YD--------LVDVIEGEATLNQALIKDKRLENL------FLLPASQTRDKDALTPEGVK 103

Query: 143 KNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL 202
           K  ++ +  +        +Y++ID+P G      + V          AIVVT P EVS  
Sbjct: 104 K--VVNELKAM-----DFDYIIIDSPAGIEQGFKNAV-----YFADEAIVVTNP-EVS-- 148

Query: 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE------IFPK-----DSGGAEKMC 251
            VR   D  R     IIG++E+  +       +P E        P+     +    E + 
Sbjct: 149 SVR---DSDR-----IIGLLESK-SRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVL 199

Query: 252 AELSVPFLGSVPIDPLVTRHCDEGTSAI-DTPSACVDAIQQIVQ 294
             LS+P +G +P D  V R  ++G   I D  S    A + I +
Sbjct: 200 EILSIPLIGVIPEDQDVLRASNKGEPVILDDNSDAGKAYRDIAR 243

Length = 272

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88
          V SGKGGVGK+  +  LA  LAK  +   V +LD D+
Sbjct: 4  VTSGKGGVGKTNISANLALALAKLGKR--VLLLDADL 38

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|222264 pfam13614, AAA_31, AAA domain

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 52  VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGW 111
           V S  GG GK+TF   LA+ LA+      V  LDL+     +   +GL          G 
Sbjct: 5   VYSPVGGEGKTTFALNLAQSLAEEGPK--VLYLDLEEYSGDLALFLGL-------EPKGL 55

Query: 112 SPV-FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE-------YL 163
           S + +  + L       L+ +         P+    +R+ +S  +W   LE        +
Sbjct: 56  SDLLYYLKRLD----SMLIQAMGGLDYLAPPRNPEDLRE-VSPEEWEQLLERLRERYDVI 110

Query: 164 LIDTPPGT 171
           ++D  P  
Sbjct: 111 VLDLGPLV 118

This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 145

>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG 98
          +V V SGKGG GK+T    LA +L    + V   + D D+  P++  ++G
Sbjct: 3  QVAVASGKGGTGKTTVAANLAVLLGDKYKLV---LADCDVEAPNLHLLLG 49

Length = 284

>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
          + V + KGGVGK+T    LA  LA+  +   V ++DLD
Sbjct: 2  IAVANQKGGVGKTTTAVNLAAALARRGK--RVLLIDLD 37

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. Length = 104

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIG 220
           +Y+LIDTPPG     L  +  L  L     I+VTTP+ +++L  R+  +   ++ I  + 
Sbjct: 35  DYVLIDTPPGLGLLVLLCLLAL--LAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLR 92

Query: 221 VV 222
            V
Sbjct: 93  PV 94

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|214385 CHL00175, minD, septum-site determining protein; Validated

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 52/248 (20%)

Query: 40  KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMP 94
           K   + +   +++ SGKGGVGK+T T  L   +A+    V     D+G+ +LD+      
Sbjct: 8   KEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL------ 61

Query: 95  RMMGLLNEQVHQSASGWSPVF-----LEE---------NLSVMSIGFLLNSPDDAVIWRG 140
            ++GL N  ++ +      V      L++         NLS+++I    N     V    
Sbjct: 62  -LLGLENRVLYTAMD----VLEGECRLDQALIRDKRWKNLSLLAIS--KNRQRYNVT--- 111

Query: 141 PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
            +KN      L +     G +Y+LID P G     ++ +      P   AIVVTTP+  +
Sbjct: 112 -RKNM---NMLVDSLKNRGYDYILIDCPAGIDVGFINAIA-----PAQEAIVVTTPEITA 162

Query: 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLG 260
           + D  +         I  + ++ N          +P  I   D      +   L +P LG
Sbjct: 163 IRDADRVAGLLEANGIYNVKLLVNR--------VRPDMIQANDMMSVRDVQEMLGIPLLG 214

Query: 261 SVPIDPLV 268
           ++P D  V
Sbjct: 215 AIPEDENV 222

Length = 281

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 33  DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLA 69
             G+E +   L+    K+ VL G+ GVGKST  N L 
Sbjct: 152 GDGLEELAELLAG---KITVLLGQSGVGKSTLINALL 185

Length = 301

>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI 218
             + L+ID+  GT      ++  LKG  D+ AI+VT P    L D+++ ++      IP 
Sbjct: 163 LADLLIIDSAAGT---GCPVIASLKGA-DL-AILVTEPTPFGLHDLKRALELVEHFGIP- 216

Query: 219 IGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA 278
            G+V N                  DS   E+ C E  +P LG +P D  +      G   
Sbjct: 217 TGIVINRYN-------------LGDS-EIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPF 262

Query: 279 IDTPSACVDAIQQIVQ 294
           ++  S   +AI +  +
Sbjct: 263 VEPDSKEAEAILEEAE 278

Length = 284

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 33  DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLA 69
             G++ ++  L     K  VL G+ GVGKST  N L 
Sbjct: 73  GEGLDELRELLKG---KTSVLVGQSGVGKSTLLNALL 106

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 35  GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLA 69
           G++ +K  L     KV VL+G+ GVGKST  N LA
Sbjct: 154 GLDELKPLL---AGKVTVLAGQSGVGKSTLLNALA 185

Length = 298

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLA 69
          GIE +K  L     K  VL+G+ GVGKST  N L 
Sbjct: 25 GIEELKPLLKG---KTSVLAGQSGVGKSTLLNALL 56

Length = 161

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNI-PI 218
            +Y++IDT  G SD  L          D   IVVTTP+  S+ D    I    K      
Sbjct: 45  YDYIIIDTGAGISDNVLDFFL----AADEV-IVVTTPEPTSITDAYALIKKLAKQLRVLN 99

Query: 219 IGVVENMATFVCPKCTKPSE---IFPKDSGGAEKMCAELSVPFLGSVP 263
             VV N           P E   +F + S  + +    LS+ +LG +P
Sbjct: 100 FRVVVNR-------AESPKEGKKVFKRLSNVSNRF-LGLSLDYLGFIP 139

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)

Query: 175 HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVV 222
           +L  ++Y+  LPDI  I++   +E + L   +E   CRK+ IP I ++
Sbjct: 151 YLGGIKYMTKLPDI-VIIIDQQEEYTAL---RE---CRKLGIPTISIL 191

Length = 230

>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 32/145 (22%)

Query: 47  KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD--------LDICGPSMPR--- 95
             +++  +GKGGVGK+T     A  LA+S + V +   D         D+     PR   
Sbjct: 1   MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG 60

Query: 96  ---------MMGLLNEQVHQSASGWSPV--FLEENLSVMSIGFLLNSPDDAVIWRGPKKN 144
                        L E        W  V  +L   L    +G +    D+     G  + 
Sbjct: 61  PNLDALELDPEKALEE-------YWDEVKDYLARLLRTRGLGGIY--ADELATLPGIDEA 111

Query: 145 TMIRQFLSEVDWGNGLEYLLIDTPP 169
             + + L         + +++DT P
Sbjct: 112 LALLKILEYYV-SGEYDVIVVDTAP 135

Length = 322

>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 25/192 (13%)

Query: 43  LSNVKHKVL-VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP------- 94
            S  + KVL + S K G GKST +  +A   A++       ++D D+    M        
Sbjct: 12  FSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQA--GYKTLLIDGDMRNSVMSGTFKSQN 69

Query: 95  RMMGLLNEQVHQSASGWSPVFLE-ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSE 153
           ++ GL N     +    +      ENL V++ G +   P+   + +     T+I      
Sbjct: 70  KITGLTNFLSGTTDLSDAICDTNIENLFVITSGPV--PPNPTELLQSSNFKTLIETLRKY 127

Query: 154 VDWGNGLEYLLIDTPP-GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCR 212
            D      Y++IDTPP GT  +   + +         +I+VT   E+   DV+K  +   
Sbjct: 128 FD------YIIIDTPPIGTVTDAAIIARACDA-----SILVTDAGEIKKRDVQKAKEQLE 176

Query: 213 KVNIPIIGVVEN 224
           +     +GVV N
Sbjct: 177 QTGSNFLGVVLN 188

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG3022|consensus	300		100.0
PRK11670	369	antiporter inner membrane protein; Provisional	100.0
COG2894	272	MinD Septum formation inhibitor-activating ATPase	100.0
CHL00175	281	minD septum-site determining protein; Validated	100.0
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.98
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.97
PRK10818	270	cell division inhibitor MinD; Provisional	99.97
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.97
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.97
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.97
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.97
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.97
PRK13236	296	nitrogenase reductase; Reviewed	99.97
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.96
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.96
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.96
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.96
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.96
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.96
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.96
PRK10037	250	cell division protein; Provisional	99.96
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.96
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.96
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.96
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.96
cd02032	267	Bchl_like This family of proteins contains bchL an	99.95
cd02036	179	MinD Bacterial cell division requires the formatio	99.95
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.95
PHA02518	211	ParA-like protein; Provisional	99.95
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.95
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.94
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.94
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.94
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.94
cd02117	212	NifH_like This family contains the NifH (iron prot	99.94
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.94
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.94
PHA02519	387	plasmid partition protein SopA; Reviewed	99.94
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.93
cd03110	179	Fer4_NifH_child This protein family's function is	99.92
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.91
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.91
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.9
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.9
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.89
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.89
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.89
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.88
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.86
PRK11519	719	tyrosine kinase; Provisional	99.85
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.85
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.84
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	99.83
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.83
cd03111	106	CpaE_like This protein family consists of proteins	99.83
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.82
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.79
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.78
KOG2825|consensus	323		99.77
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	99.71
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.67
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	99.62
cd03114	148	ArgK-like The function of this protein family is u	99.55
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.48
PRK13886	241	conjugal transfer protein TraL; Provisional	99.43
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	99.41
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.41
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.4
PRK10867	433	signal recognition particle protein; Provisional	99.39
cd02034	116	CooC The accessory protein CooC, which contains a	99.37
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	99.36
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.35
PRK10416	318	signal recognition particle-docking protein FtsY;	99.33
TIGR00959	428	ffh signal recognition particle protein. This mode	99.32
PRK12374	231	putative dithiobiotin synthetase; Provisional	99.32
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.27
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.26
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.25
PRK13768	253	GTPase; Provisional	99.25
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	99.25
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	99.24
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	99.23
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.23
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.22
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.2
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.19
PRK00784	488	cobyric acid synthase; Provisional	99.18
PRK05632	684	phosphate acetyltransferase; Reviewed	99.13
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	99.12
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.1
PRK14974	336	cell division protein FtsY; Provisional	99.08
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.06
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	99.04
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	99.03
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	99.02
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.01
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	99.01
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.01
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.98
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.94
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.94
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.93
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.9
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.9
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	98.83
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.81
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.73
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.55
KOG0781|consensus	587		98.55
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.55
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	98.55
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.52
KOG0780|consensus	483		98.52
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.51
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.39
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.23
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.12
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.08
KOG1532|consensus	366		98.07
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.04
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.01
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.98
KOG0635|consensus	207		97.95
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.94
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.9
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.83
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.83
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.8
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.79
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.77
KOG1533|consensus	290		97.76
cd00881	189	GTP_translation_factor GTP translation factor fami	97.73
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.71
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.69
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.69
PLN03127	447	Elongation factor Tu; Provisional	97.66
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.64
COG0857	354	Pta BioD-like N-terminal domain of phosphotransace	97.64
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.63
PRK04296	190	thymidine kinase; Provisional	97.63
cd03116	159	MobB Molybdenum is an essential trace element in t	97.62
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.61
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.61
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.59
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.58
PRK00049	396	elongation factor Tu; Reviewed	97.56
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.56
PRK06067	234	flagellar accessory protein FlaH; Validated	97.53
cd03112	158	CobW_like The function of this protein family is u	97.52
PTZ00141	446	elongation factor 1- alpha; Provisional	97.48
PHA02542	473	41 41 helicase; Provisional	97.48
CHL00071	409	tufA elongation factor Tu	97.48
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.47
PRK12736	394	elongation factor Tu; Reviewed	97.47
PLN03126	478	Elongation factor Tu; Provisional	97.47
KOG1534|consensus	273		97.45
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	97.45
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.42
PRK12735	396	elongation factor Tu; Reviewed	97.41
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.41
PRK00007	693	elongation factor G; Reviewed	97.4
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.4
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.39
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.37
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.36
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.35
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.34
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.33
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.33
smart00382	148	AAA ATPases associated with a variety of cellular	97.32
PRK12739	691	elongation factor G; Reviewed	97.32
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.31
KOG2749|consensus	415		97.28
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.28
PRK03846	198	adenylylsulfate kinase; Provisional	97.28
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.27
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.26
PRK12740	668	elongation factor G; Reviewed	97.26
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.25
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.25
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.25
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.24
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.22
PRK07667	193	uridine kinase; Provisional	97.2
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.19
PRK00889	175	adenylylsulfate kinase; Provisional	97.19
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.19
PRK05595	444	replicative DNA helicase; Provisional	97.18
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.18
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.18
PLN00043	447	elongation factor 1-alpha; Provisional	97.18
PRK00089	292	era GTPase Era; Reviewed	97.17
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.15
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.15
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.13
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.12
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.11
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.11
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.11
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.09
PRK10218	607	GTP-binding protein; Provisional	97.08
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.08
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.08
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.07
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.07
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.07
cd03246	173	ABCC_Protease_Secretion This family represents the	97.06
PRK06696	223	uridine kinase; Validated	97.06
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.05
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.04
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	97.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.03
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	97.03
COG1159	298	Era GTPase [General function prediction only]	97.03
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.03
COG4181	228	Predicted ABC-type transport system involved in ly	97.02
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.01
PRK09165	497	replicative DNA helicase; Provisional	97.0
PRK11823	446	DNA repair protein RadA; Provisional	97.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.99
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	96.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.95
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	96.94
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	96.93
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.92
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.91
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.9
PRK08760	476	replicative DNA helicase; Provisional	96.9
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.89
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.89
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.89
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.88
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.88
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.87
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.87
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.87
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.87
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.86
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.86
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.86
PRK00093	435	GTP-binding protein Der; Reviewed	96.86
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	96.85
COG2403	449	Predicted GTPase [General function prediction only	96.85
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.85
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	96.84
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.84
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	96.84
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	96.83
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.82
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.82
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.81
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.81
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.81
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.81
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	96.8
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.8
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.8
PRK09302	509	circadian clock protein KaiC; Reviewed	96.8
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.8
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	96.79
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.78
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.78
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.78
PRK05973	237	replicative DNA helicase; Provisional	96.78
PRK13351	687	elongation factor G; Reviewed	96.77
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.76
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.75
PRK08233	182	hypothetical protein; Provisional	96.75
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.74
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.74
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.73
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	96.73
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.72
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.72
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.7
PRK07952	244	DNA replication protein DnaC; Validated	96.7
PRK12317	425	elongation factor 1-alpha; Reviewed	96.7
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.69
PRK15453	290	phosphoribulokinase; Provisional	96.69
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.69
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	96.69
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.68
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.68
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.67
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.67
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.67
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	96.67
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.66
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.65
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.65
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.65
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.64
PRK10908	222	cell division protein FtsE; Provisional	96.64
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.64
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	96.63
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.63
PRK05748	448	replicative DNA helicase; Provisional	96.63
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.63
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	96.62
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.62
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	96.62
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.62
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.62
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.61
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.61
KOG0066|consensus	807		96.6
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.6
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.6
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	96.58
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.58
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	96.58
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.57
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.56
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.55
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	96.55
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	96.55
PRK08006	471	replicative DNA helicase; Provisional	96.55
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.54
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.54
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.53
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.53
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.52
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.52
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.51
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.51
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.5
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.5
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.5
PRK08506	472	replicative DNA helicase; Provisional	96.5
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.5
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.5
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.49
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	96.49
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.49
PRK06321	472	replicative DNA helicase; Provisional	96.48
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.48
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	96.48
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.47
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.47
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.47
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	96.47
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.47
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.46
PF13245	76	AAA_19: Part of AAA domain	96.46
COG4987	573	CydC ABC-type transport system involved in cytochr	96.46
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	96.46
PRK05480	209	uridine/cytidine kinase; Provisional	96.45
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.45
PTZ00416	836	elongation factor 2; Provisional	96.45
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.44
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	96.44
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.44
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.44
COG3367	339	Uncharacterized conserved protein [Function unknow	96.44
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.44
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.43
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.43
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.43
PRK15494	339	era GTPase Era; Provisional	96.42
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	96.42
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.41
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.41
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	96.4
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.39
PRK04328	249	hypothetical protein; Provisional	96.38
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.38
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	96.37
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.37
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	96.37
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	96.37
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	96.37
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.35
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	96.35
PRK06762	166	hypothetical protein; Provisional	96.35
PRK05636	505	replicative DNA helicase; Provisional	96.34
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	96.34
PRK05541	176	adenylylsulfate kinase; Provisional	96.33
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	96.33
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.33
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.31
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	96.31
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.3
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.29
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.29
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.29
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	96.29
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	96.29
PLN03232	1495	ABC transporter C family member; Provisional	96.29
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.28
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.28
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.28
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.27
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.27
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.27
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	96.27
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.26
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.26
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.25
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.25
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.25
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.22
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.22
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.22
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	96.21
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.21
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.21
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.2
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.19
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	96.19
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.18
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	96.18
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.18
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	96.18
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.18
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.17
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.17
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	96.17
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.17
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.17
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.17
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.16
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	96.16
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.16
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.15
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.15
PRK09302	509	circadian clock protein KaiC; Reviewed	96.14
PRK08840	464	replicative DNA helicase; Provisional	96.14
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	96.14
PTZ00243	1560	ABC transporter; Provisional	96.14
COG1160	444	Predicted GTPases [General function prediction onl	96.13
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	96.13
PF13479	213	AAA_24: AAA domain	96.13
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.13
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	96.13
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.13
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.13
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.13
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.13
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	96.12
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	96.11
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.11
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.1
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	96.09
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.09
PHA00729	226	NTP-binding motif containing protein	96.08
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.08
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.08
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.07
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.07
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	96.07
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.04
PRK09519	790	recA DNA recombination protein RecA; Reviewed	96.03
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.02
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	96.01
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.01
PRK05433	600	GTP-binding protein LepA; Provisional	95.99
PLN03130	1622	ABC transporter C family member; Provisional	95.99
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	95.99
COG4988	559	CydD ABC-type transport system involved in cytochr	95.97
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	95.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	95.96
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.94
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	95.94
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.94
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.94
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	95.94
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	95.94
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.94
PRK05439	311	pantothenate kinase; Provisional	95.93
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	95.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.92
PTZ00035	337	Rad51 protein; Provisional	95.91
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.9
PRK07004	460	replicative DNA helicase; Provisional	95.89
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	95.89
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	95.89
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	95.88
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	95.88
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.87
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	95.86
cd03299	235	ABC_ModC_like Archeal protein closely related to M	95.85
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.85
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	95.84
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	95.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.84
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	95.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	95.82

>KOG3022|consensus

Probab=100.00  E-value=7.5e-48  Score=320.69  Aligned_cols=286  Identities=59%  Similarity=1.050  Sum_probs=272.3

Q ss_pred             CCCCCccccCccccccCCCCCcccccCCCCCCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc
Q psy11347          1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD   80 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~   80 (294)
                      |||..++.+||.+.|.+|+++-.|.+ +|..+++-++.+.++++....+|+|.||||||||||+|.|||.+|+  ..|++
T Consensus         2 cpg~~s~~ag~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La--~~g~~   78 (300)
T KOG3022|consen    2 CPGVLSSEAGKAEECAGCPNVGYCSS-SPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALA--SEGKK   78 (300)
T ss_pred             CCCcchhhhcchhhccCCcccccccc-CCcCcCCCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHh--cCCCc
Confidence            99999999999999999999999999 8888899999999999999999999999999999999999999999  89999


Q ss_pred             EEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCc
Q psy11347         81 VGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL  160 (294)
Q Consensus        81 VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~y  160 (294)
                      |.++|.|..++++..++|.+.+...+....|.++....++.++..++.+...++.+.+.++.....++.++....|++ .
T Consensus        79 vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~-l  157 (300)
T KOG3022|consen   79 VGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGE-L  157 (300)
T ss_pred             EEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCC-c
Confidence            999999999999999999999999999999999989999999999999888788889999999999999999999988 9


Q ss_pred             cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347        161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF  240 (294)
Q Consensus       161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~  240 (294)
                      ||+|||+||+.+++++.+.+.+  ..+|..|+||+|...++.++.+-+.++++.+++.+|+|-||+.+.|+.|.+...++
T Consensus       158 DyLviDtPPGtsDehls~~~~~--~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF  235 (300)
T KOG3022|consen  158 DYLVIDTPPGTSDEHLSLVQFL--RESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIF  235 (300)
T ss_pred             CEEEEeCCCCCChhhhheeecc--cccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceec
Confidence            9999999999999999998877  44588999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347        241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ..  ...+++.+.+|+++|+.||-|+.+.++.++|.|+++  |.+.+++.|+++++
T Consensus       236 ~~--gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~  289 (300)
T KOG3022|consen  236 GS--GGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAE  289 (300)
T ss_pred             cC--ccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHH
Confidence            65  667899999999999999999999999999999888  99999999999873

>PRK11670 antiporter inner membrane protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=252.57  Aligned_cols=243  Identities=39%  Similarity=0.712  Sum_probs=180.1

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccc-ccCCCCcceeccCe
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ-SASGWSPVFLEENL  120 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~-~~~~~~~~~~~~~l  120 (294)
                      .+..+.++|+|.|+||||||||+|.|||..|+  ..|+||+++|+|+++++++.+||........ ....+.+.. ..++
T Consensus       102 ~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA--~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~-~~g~  178 (369)
T PRK11670        102 GVNGVKNIIAVSSGKGGVGKSSTAVNLALALA--AEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIM-AHGL  178 (369)
T ss_pred             cCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeee-ccCc
Confidence            46667899999999999999999999999999  8999999999999999998889875421110 000011100 0111


Q ss_pred             EEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                      .....+. +........+.++.....+.+++....+++ |||||||+||++++..+.. ..+  ..+|.+|+|++++..+
T Consensus       179 ~~~~~~~-l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~-yDyvIID~PPg~gd~~l~~-~~l--~aad~viiV~tp~~~s  253 (369)
T PRK11670        179 ATNSIGY-LVTDDNAMVWRGPMASKALMQMLQETLWPD-LDYLVLDMPPGTGDIQLTL-AQN--IPVTGAVVVTTPQDIA  253 (369)
T ss_pred             ccccHHH-hcCcCcceeecCcchHHHHHHHHHHHhhcc-CCEEEEeCCCCCchHHHHH-hhh--ccCCeEEEEecCchhH
Confidence            1111111 111111222333344456677775333345 9999999999998644322 222  3689999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID  280 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~  280 (294)
                      +.++.+.++.+.+.+++.+|+|.||+..+++.|.....++.  ....+++.+.++.++++.||.+..+.++...|+|+..
T Consensus       254 ~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~--~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~  331 (369)
T PRK11670        254 LIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFG--TGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVV  331 (369)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcc--cchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEE
Confidence            99999999999999999999999999988777766666553  2346788888999999999999999999999999997


Q ss_pred             --CCCHHHHHHHHhhC
Q psy11347        281 --TPSACVDAIQQIVQ  294 (294)
Q Consensus       281 --~~s~~~~~~~~la~  294 (294)
                        |+++++++|++|++
T Consensus       332 ~~p~s~~a~~y~~LA~  347 (369)
T PRK11670        332 SRPESEFTAIYRQLAD  347 (369)
T ss_pred             eCCCCHHHHHHHHHHH
Confidence              99999999999874

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=100.00  E-value=2e-33  Score=226.82  Aligned_cols=225  Identities=26%  Similarity=0.343  Sum_probs=180.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc------ccccCCCCccee---
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV------HQSASGWSPVFL---  116 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~------~~~~~~~~~~~~---  116 (294)
                      |.++|+++||||||||||.++||+..|+  ..|++|++||+|..-.+++..+|.+...+      .++...+.+...   
T Consensus         1 M~~iIVvTSGKGGVGKTTttAnig~aLA--~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDK   78 (272)
T COG2894           1 MARIIVVTSGKGGVGKTTTTANIGTALA--QLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDK   78 (272)
T ss_pred             CceEEEEecCCCCcCccchhHHHHHHHH--HcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccc
Confidence            6789999999999999999999999999  99999999999998889999999998743      333444444332   


Q ss_pred             -ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        117 -EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       117 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                       .+|+.++|+...-.  .      .....+.+..++++|+. .+|||||+|+|++....+.   +++  ..||..++|++
T Consensus        79 r~~nL~lLPAsQtrd--K------dalt~E~v~~vv~eL~~-~~fDyIi~DsPAGIE~G~~---~A~--~~Ad~AiVVtn  144 (272)
T COG2894          79 RLENLFLLPASQTRD--K------DALTPEGVKKVVNELKA-MDFDYIIIDSPAGIEQGFK---NAV--YFADEAIVVTN  144 (272)
T ss_pred             cCCceEecccccccC--c------ccCCHHHHHHHHHHHHh-cCCCEEEecCcchHHHHHH---hhh--hccceEEEEcC
Confidence             38899999874321  1      12234477888888875 3499999999999875443   333  68999999999


Q ss_pred             CchhhHHHHHHHHHHHHhcC----CC---eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        196 PQEVSLLDVRKEIDFCRKVN----IP---IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~~~----~~---~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      |+..|++++.|++-.++..+    ..   ..++++||+++.-   -.+.++.     .++++.+-+.++++|+||.++.+
T Consensus       145 PEvSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~---v~~GeMl-----sv~Dv~~iL~i~liGiiPed~~V  216 (272)
T COG2894         145 PEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEM---VKRGEML-----SVEDVLEILSIPLIGVIPEDQDV  216 (272)
T ss_pred             CCccccccchhheeehhcccchhhcCCcccceEEEEccCHHH---hccCCcc-----cHHHHHHHhCCceEEeecCchhh
Confidence            99999999999999997554    22   3799999998520   0122333     58899999999999999999999


Q ss_pred             hhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347        269 TRHCDEGTSAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       269 ~~a~~~g~~v~~-~~s~~~~~~~~la~  294 (294)
                      ..+.+.|.|+.- +.+.+.++|+.+++
T Consensus       217 i~asN~GePv~l~~~~~a~~Ay~d~ar  243 (272)
T COG2894         217 LRASNKGEPVILDDNSDAGKAYRDIAR  243 (272)
T ss_pred             heecCCCCCeEeCCCchHHHHHHHHHH
Confidence            999999999998 88899999998874

>CHL00175 minD septum-site determining protein; Validated

Probab=100.00  E-value=3.1e-32  Score=239.09  Aligned_cols=231  Identities=23%  Similarity=0.286  Sum_probs=178.5

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCc
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSP  113 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~  113 (294)
                      +.+...|+++|+|+|+||||||||+|.|||.+|+  +.|++|++||+|++.++++.+||.+...      +......+++
T Consensus         8 ~~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La--~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~   85 (281)
T CHL00175          8 KEKSATMSRIIVITSGKGGVGKTTTTANLGMSIA--RLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQ   85 (281)
T ss_pred             hhhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhh
Confidence            3455667899999999999999999999999999  8999999999999988999999876431      1222223333


Q ss_pred             ce----eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcE
Q psy11347        114 VF----LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIG  189 (294)
Q Consensus       114 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~  189 (294)
                      ..    ..++++++|.+.....        .......+.++++.+... .|||||||+||++.......+     ..+|.
T Consensus        86 ~~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~~~-~yD~VIiDtpp~~~~~~~~~l-----~~aD~  151 (281)
T CHL00175         86 ALIRDKRWKNLSLLAISKNRQR--------YNVTRKNMNMLVDSLKNR-GYDYILIDCPAGIDVGFINAI-----APAQE  151 (281)
T ss_pred             heeecCCCCCeEEEeCCCchhh--------ccCCHHHHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHH-----HhcCe
Confidence            22    2378999988643211        011233578888888632 499999999999875444433     46899


Q ss_pred             EEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        190 AIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       190 vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      +++|++++..++..+.++++.+++.+....++|+|++++.       ....+. ....+++.+.++.++++.||+++.+.
T Consensus       152 viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~Ip~d~~v~  223 (281)
T CHL00175        152 AIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD-------MIQAND-MMSVRDVQEMLGIPLLGAIPEDENVI  223 (281)
T ss_pred             eEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh-------hhhhhc-cccHHHHHHHhCCCeEEEccCCHhHH
Confidence            9999999999999999999999988877789999998631       110110 11245677778999999999999999


Q ss_pred             hhccCCccccc--CCCHHHHHHHHhhC
Q psy11347        270 RHCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       270 ~a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ++...|+|+.+  |.++++++|++||+
T Consensus       224 ~a~~~g~~~~~~~~~~~~~~~~~~la~  250 (281)
T CHL00175        224 ISTNRGEPLVLNKKLTLSGIAFENAAR  250 (281)
T ss_pred             HHHHcCCceEeCCCCCHHHHHHHHHHH
Confidence            99999999998  99999999999974

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.98  E-value=1.6e-31  Score=230.71  Aligned_cols=219  Identities=27%  Similarity=0.387  Sum_probs=169.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc--cc---cccCCCCcce--eccCe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ--VH---QSASGWSPVF--LEENL  120 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~--~~---~~~~~~~~~~--~~~~l  120 (294)
                      ++|+|+|+||||||||+|.|||.+|+  ..|++|++||+|++++++..++|.+...  +.   .....+.+..  ...++
T Consensus         1 ~ii~v~~~KGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   78 (251)
T TIGR01969         1 RIITIASGKGGTGKTTITANLGVALA--KLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGV   78 (251)
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCE
Confidence            47999999999999999999999999  8999999999999888889989876531  11   1112222221  23689


Q ss_pred             EEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                      +++|.+.......       ......+.+.+..+.  ++||+||||+||+++......+     ..+|.+|+|++++..+
T Consensus        79 ~~lp~~~~~~~~~-------~~~~~~l~~~l~~l~--~~yD~VIiD~p~~~~~~~~~~l-----~~ad~vliv~~~~~~s  144 (251)
T TIGR01969        79 KVIPAGVSLEGLR-------KADPDKLEDVLKEII--DDTDFLLIDAPAGLERDAVTAL-----AAADELLLVVNPEISS  144 (251)
T ss_pred             EEEeCCCCHHHHh-------hcCHHHHHHHHHHHH--hhCCEEEEeCCCccCHHHHHHH-----HhCCeEEEEECCCCch
Confidence            9998774332211       112346777888775  3499999999999986555444     4789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID  280 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~  280 (294)
                      +..+.++++.....+.+..++|+|+++..      ...+      ..+.+.+.++.++++.||+++.+.++...|+|+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~vv~N~~~~~------~~~~------~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~  212 (251)
T TIGR01969       145 ITDALKTKIVAEKLGTAILGVVLNRVTRD------KTEL------GREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVI  212 (251)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEECCCch------hhhh------HHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEE
Confidence            99998888888887888899999998631      1111      13445555788999999999999999999999998


Q ss_pred             --CCCHHHHHHHHhhC
Q psy11347        281 --TPSACVDAIQQIVQ  294 (294)
Q Consensus       281 --~~s~~~~~~~~la~  294 (294)
                        |.++++++|++|++
T Consensus       213 ~~~~~~~~~~~~~la~  228 (251)
T TIGR01969       213 YNPNSPAAQAFMELAA  228 (251)
T ss_pred             eCCCCHHHHHHHHHHH
Confidence              99999999999873

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.97  E-value=1.7e-30  Score=225.50  Aligned_cols=223  Identities=24%  Similarity=0.326  Sum_probs=170.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc---cc---cccCCCCcc----ee
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ---VH---QSASGWSPV----FL  116 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~---~~---~~~~~~~~~----~~  116 (294)
                      +++|+|+|+|||+||||+|.|||.+|+  ..|+||+++|+|++.++++.+||.+...   +.   .....+.+.    ..
T Consensus         1 ~~ii~v~s~kGGvGKTt~a~~lA~~la--~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~   78 (261)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALA--RLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKR   78 (261)
T ss_pred             CeEEEEecCCCCccHHHHHHHHHHHHH--HcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCC
Confidence            478999999999999999999999999  8999999999999988888888876431   11   111111111    12


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      .++++++|.+.....        .......+.++++.+.  +.||+||||+||++.......+     ..+|.+|+|+++
T Consensus        79 ~~~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~--~~~D~viiD~p~~~~~~~~~~l-----~~aD~viiv~~~  143 (261)
T TIGR01968        79 LKNLYLLPASQTRDK--------DAVTPEQMKKLVNELK--EEFDYVIIDCPAGIESGFRNAV-----APADEAIVVTTP  143 (261)
T ss_pred             CCCeEEEeCCCchhh--------hhCCHHHHHHHHHHHH--HhCCEEEEeCCCCcCHHHHHHH-----HhCCeEEEEcCC
Confidence            368999987643211        1112335777888876  3499999999999976544433     478999999999


Q ss_pred             chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCc
Q psy11347        197 QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGT  276 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~  276 (294)
                      +..++..+.++++.++..+....++|+|++++.       ....+ ....++++.+.++.++++.||++..+.++...|+
T Consensus       144 ~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~  215 (261)
T TIGR01968       144 EVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE-------MVKKG-DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGE  215 (261)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch-------hcccc-cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCC
Confidence            999999999999999988776789999998732       11011 1112567777789999999999999999999999


Q ss_pred             cccc-CCCHHHHHHHHhhC
Q psy11347        277 SAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       277 ~v~~-~~s~~~~~~~~la~  294 (294)
                      |+++ +.++++++|++|++
T Consensus       216 ~v~~~~~s~~~~~~~~La~  234 (261)
T TIGR01968       216 PVVLNDKSRAGKAFENIAR  234 (261)
T ss_pred             CeecCCCChHHHHHHHHHH
Confidence            9998 66999999999874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.97  E-value=4e-30  Score=224.47  Aligned_cols=225  Identities=23%  Similarity=0.277  Sum_probs=168.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---c---cccCCCCcce----
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---H---QSASGWSPVF----  115 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~---~~~~~~~~~~----  115 (294)
                      |+++|+|.|+||||||||+|.|||..|+  ..|++|+++|+|++.++++.+||.+....   .   .....+.+..    
T Consensus         1 m~kviav~s~KGGvGKTt~a~nlA~~la--~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (270)
T PRK10818          1 MARIIVVTSGKGGVGKTTSSAAIATGLA--QKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDK   78 (270)
T ss_pred             CceEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccC
Confidence            6799999999999999999999999999  89999999999999888999998764321   1   1111222211    


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                      ..++++++|.+....  ...      .....+.++++.++... |||||||+||+++......+     ..+|.+|+|++
T Consensus        79 ~~~~~~~lp~~~~~~--~~~------~~~~~~~~~l~~l~~~~-yd~viiD~p~~~~~~~~~~l-----~~ad~vivv~~  144 (270)
T PRK10818         79 RTENLYILPASQTRD--KDA------LTREGVAKVLDDLKAMD-FEFIVCDSPAGIETGALMAL-----YFADEAIITTN  144 (270)
T ss_pred             CcCCEEEecCCCCcc--hhh------hCHHHHHHHHHHHhhcC-CCEEEEeCCCCccHHHHHHH-----HhCCeEEEEcC
Confidence            247899999874321  110      11224567777775323 99999999999986654444     57999999999


Q ss_pred             CchhhHHHHHHHHHHHHhc-----C--CC-eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        196 PQEVSLLDVRKEIDFCRKV-----N--IP-IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~~-----~--~~-~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      ++..++..+.++++.+...     +  .+ ..++|+|+++.+       .... ......+++.+.+|.++++.||++..
T Consensus       145 p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~-------~~~~-~~~~~~~~~~~~~g~~~~~~Ip~~~~  216 (270)
T PRK10818        145 PEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG-------RVSR-GDMLSMEDVLEILRIKLVGVIPEDQS  216 (270)
T ss_pred             CCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh-------hhhh-cccccHHHHHHHhCCcEEEEecCCHH
Confidence            9999999999999998632     1  12 258899998632       1111 11113567777889999999999999


Q ss_pred             hhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347        268 VTRHCDEGTSAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       268 ~~~a~~~g~~v~~-~~s~~~~~~~~la~  294 (294)
                      +.++...|+|+.. ++++++++|++|++
T Consensus       217 v~~a~~~G~~v~~~~~~~~~~~~~~la~  244 (270)
T PRK10818        217 VLRASNQGEPVILDIEADAGKAYADTVD  244 (270)
T ss_pred             HHHHHHcCCeeEeCCCCHHHHHHHHHHH
Confidence            9999999999977 88999999999874

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.97  E-value=3.8e-30  Score=224.87  Aligned_cols=227  Identities=17%  Similarity=0.158  Sum_probs=161.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-cccccc-------CCCCcc--ee
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSA-------SGWSPV--FL  116 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~-------~~~~~~--~~  116 (294)
                      |++|+|. +||||||||++.|||..|+  +.|+||+++|+|+++++...++|.... .+....       ..+.++  ..
T Consensus         1 ~~~iav~-gKGGVGKTT~a~nLA~~La--~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~   77 (273)
T PRK13232          1 MRQIAIY-GKGGIGKSTTTQNLTAALS--TMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG   77 (273)
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHHHHH--hhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC
Confidence            4789999 9999999999999999999  899999999999999887777764322 111111       111112  12


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      .++++++|++.......  ...........+.+.++.+.  ++|||||||++++.....+....++  ..+|.+++|+++
T Consensus        78 ~~~i~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~--~~yD~vlID~~~~~~~~~~~~~~al--~aad~vlip~~p  151 (273)
T PRK13232         78 FGDIKCVESGGPEPGVG--CAGRGIITSIGLLENLGAYT--DDLDYVFYDVLGDVVCGGFAMPIRE--GKAKEIYIVASG  151 (273)
T ss_pred             CCCeEEEeCCCCCCCCC--CCCCchhHHHHHHHHccccc--ccCCEEEEecCCCeeECCEeccccc--cccceEEEecCc
Confidence            36899999864322110  00000011123556666655  4499999999876632111111111  368999999999


Q ss_pred             chhhHHHHHHHHHHHHhc---CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347        197 QEVSLLDVRKEIDFCRKV---NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD  273 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~  273 (294)
                      +..++.++.++++.++..   +.++.++|+|+...            ....+..+++.+.++..+++.||++..+.++..
T Consensus       152 ~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~------------~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~  219 (273)
T PRK13232        152 ELMAIYAANNICKGLAKFAKGGARLGGIICNSRNV------------DGERELLEAFAKKLGSQLIHFVPRDNIVQRAEI  219 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCC------------CccHHHHHHHHHHhCCCeEEECCCCHHHHHHHH
Confidence            999999999998888753   56678999998531            112345677778889889999999999999999


Q ss_pred             CCccccc--CCCHHHHHHHHhhC
Q psy11347        274 EGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       274 ~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .|+|++.  |+++++++|.+|++
T Consensus       220 ~g~pv~~~~p~s~~a~~y~~La~  242 (273)
T PRK13232        220 NRKTVIDFDPESNQAKEYLTLAH  242 (273)
T ss_pred             cCCCeEEeCCCChHHHHHHHHHH
Confidence            9999997  99999999999874

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.97  E-value=1.1e-29  Score=222.15  Aligned_cols=226  Identities=13%  Similarity=0.135  Sum_probs=158.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCCChhhhccccccc-cccccC-------CCCccee
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQSAS-------GWSPVFL  116 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~~~-------~~~~~~~  116 (294)
                      |+++|+|. +||||||||+|.|||..|+  + .|+||++||+|+|+++...++|..... +.....       ..+.+..
T Consensus         1 M~~vIav~-~KGGVGKTT~a~nLA~~La--~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~   77 (275)
T PRK13233          1 MTRKIAIY-GKGGIGKSTTTQNTAAAMA--YFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIK   77 (275)
T ss_pred             CceEEEEE-cCCCCcHHHHHHHHHHHHH--HhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHee
Confidence            57899999 8999999999999999999  7 599999999999987666556654321 111110       1112221


Q ss_pred             --ccCeEEEecccccCCCCcceeecCccc--hHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEE
Q psy11347        117 --EENLSVMSIGFLLNSPDDAVIWRGPKK--NTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIV  192 (294)
Q Consensus       117 --~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vli  192 (294)
                        .++++++|++.......    ......  ...+.+.++.+.  +.|||||||+++.+....+  ...+....||.+|+
T Consensus        78 ~~~~~l~~ipa~~~~~~~~----~~~~~~~~~~~l~~~l~~~~--~~yD~iliD~~~~~~~~al--~~~~~~~aad~viI  149 (275)
T PRK13233         78 TGFKDIRCVESGGPEPGVG----CAGRGVITAIDLMEENGAYT--DDLDFVFFDVLGDVVCGGF--AMPIRDGKAQEVYI  149 (275)
T ss_pred             eCCCCcEEEECCCCCCCCC----CCCcchhHHHHHHHHcCCcc--CCCCEEEEecCCceeeccc--cccchhccCceEEE
Confidence              37899999875443210    001011  112455555564  4499999999654421111  10000016999999


Q ss_pred             ecCCchhhHHHHHHHHHHHH----hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        193 VTTPQEVSLLDVRKEIDFCR----KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       193 v~~~~~~s~~~~~~~l~~l~----~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      |++++..++.++.++++.+.    ..+++..|+|+|+...       .     ...+..+++.+.++.++++.||+++.+
T Consensus       150 p~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-------~-----~~~~~~e~l~~~~~~~~l~~Ip~~~~v  217 (275)
T PRK13233        150 VASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-------D-----GELELLEEFTDAIGTQMIHFVPRDNIV  217 (275)
T ss_pred             eccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-------C-----cHHHHHHHHHHHcCCceeeecCcchHH
Confidence            99999999999999987773    4467788999997421       0     112356777778888889999999999


Q ss_pred             hhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347        269 TRHCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       269 ~~a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .++...|+|+++  |+++++++|.+|++
T Consensus       218 ~~A~~~g~pv~~~~~~s~~a~~y~~La~  245 (275)
T PRK13233        218 QKAEFNKKTVVEFDPDCNQAKEYKELAR  245 (275)
T ss_pred             HHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence            999999999998  99999999999874

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.97  E-value=1.3e-29  Score=218.18  Aligned_cols=226  Identities=17%  Similarity=0.191  Sum_probs=162.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc------ccccCCCCcc--eecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV------HQSASGWSPV--FLEE  118 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~------~~~~~~~~~~--~~~~  118 (294)
                      |++|+|.|.|||+||||+|.|||..|+  ..|+||++||+|+++ +++..+|.+....      ......|.+.  ...+
T Consensus         1 m~iI~v~s~KGGvGKTt~a~nla~~la--~~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (246)
T TIGR03371         1 MKVIAIVGVKGGVGKTTLTANLASALK--LLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSD   77 (246)
T ss_pred             CcEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCC
Confidence            578999999999999999999999999  899999999999975 5777887654321      1111123322  2247


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|.+.........   ........++++++.+.... ||+||||+||+.+......+     ..+|.+++|+.++.
T Consensus        78 ~l~~ip~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~-~D~viiD~pp~~~~~~~~~l-----~~ad~vii~~~~~~  148 (246)
T TIGR03371        78 GVLFLPFGDLSADEREA---YQAHDAGWLARLLQQLDLAA-RDWVLIDVPRGPSPITRQAL-----AAADLVLVVVNADA  148 (246)
T ss_pred             CeEEecCCCCcHHHHHH---HhhcCHHHHHHHHHhcccCC-CCEEEEECCCCchHHHHHHH-----HhCCeEEEEeCCCH
Confidence            88999875432111110   00112335677888876333 69999999998876554444     57999999999999


Q ss_pred             hhHHHHHH-HHHHHHhcCC-CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCC
Q psy11347        199 VSLLDVRK-EIDFCRKVNI-PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEG  275 (294)
Q Consensus       199 ~s~~~~~~-~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g  275 (294)
                      .++..+.+ +.+.++.... ...++|+|+++.       +..+.   .+..+.+.+.++.+++ +.||++..+.++...|
T Consensus       149 ~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g  218 (246)
T TIGR03371       149 ACYATLHQQALALFAGSGPRIGPHFLINQFDP-------ARQLS---RDVRAVLRQTLGSRLLPFVIHRDEAVSEALARG  218 (246)
T ss_pred             HHHHHHHHHHHHHhhcccccccceEEeeccCc-------chhhH---HHHHHHHHHHhcccccCCcccchhhHHHHHHcC
Confidence            99999884 4445553322 247899999873       22222   2334455566787644 7899999999999999


Q ss_pred             ccccc--CCCHHHHHHHHhhC
Q psy11347        276 TSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       276 ~~v~~--~~s~~~~~~~~la~  294 (294)
                      +|+++  |+++++++|++|++
T Consensus       219 ~pv~~~~~~s~~~~~~~~la~  239 (246)
T TIGR03371       219 TPVLNYAPHSQAAHDIRTLAG  239 (246)
T ss_pred             CCccccCCcCHHHHHHHHHHH
Confidence            99998  89999999999874

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.97  E-value=2.3e-29  Score=220.06  Aligned_cols=225  Identities=16%  Similarity=0.142  Sum_probs=154.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c---cccc---cCCCCcce--ec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q---VHQS---ASGWSPVF--LE  117 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~---~~~~---~~~~~~~~--~~  117 (294)
                      |++|+|. +||||||||+|.|||..|+  +.|+||++||+|+|+++...+++.... .   +...   ......+.  ..
T Consensus         1 m~~iav~-~KGGVGKTT~~~nLA~~La--~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~   77 (274)
T PRK13235          1 MRKVAIY-GKGGIGKSTTTQNTVAGLA--EMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGY   77 (274)
T ss_pred             CCEEEEe-CCCCccHHHHHHHHHHHHH--HCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCC
Confidence            4789999 7999999999999999999  899999999999998776665543222 1   1111   01111111  13


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHH-HHHHhhc---cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIR-QFLSEVD---WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV  193 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~---~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv  193 (294)
                      ++++++|++........    ...  ...++ .+++.+.   ..++|||||||+++.+....+....++  ..||.+++|
T Consensus        78 ~~l~~ip~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~--~aad~vlIp  149 (274)
T PRK13235         78 GGTRCTESGGPEPGVGC----AGR--GIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRD--GKAEEIYIV  149 (274)
T ss_pred             CCCEEEeCCCCCCCCCC----CCC--ceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCccccccc--ccccEEEEE
Confidence            68999987643332110    000  10111 2333331   113499999999866532111111111  269999999


Q ss_pred             cCCchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        194 TTPQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       194 ~~~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      ++++..++.++..+++.+++    .+++..++|+|+...            ....+..+++.+.++.++++.||++..+.
T Consensus       150 ~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~------------~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~  217 (274)
T PRK13235        150 CSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV------------DNEREMIEELARKIGTQMIHFVPRDNFVQ  217 (274)
T ss_pred             ecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC------------CchHHHHHHHHHHcCCceEEeCCCCHHHH
Confidence            99999999999988887753    345677899997421            11234566777778888889999999999


Q ss_pred             hhccCCccccc--CCCHHHHHHHHhhC
Q psy11347        270 RHCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       270 ~a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ++...|+|+++  |+++++++|++|++
T Consensus       218 ~A~~~g~pv~~~~p~s~~a~~y~~La~  244 (274)
T PRK13235        218 RAEINRKTVIEYDPTHPQADEYRALAR  244 (274)
T ss_pred             HHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence            99999999998  89999999999874

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.97  E-value=3.1e-29  Score=218.86  Aligned_cols=227  Identities=18%  Similarity=0.171  Sum_probs=155.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc----CCCCcce--e
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA----SGWSPVF--L  116 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~----~~~~~~~--~  116 (294)
                      |++|+|. +||||||||+|.|||.+|+  ..|+||++||+|+|++....+++.....    .....    ..+.++.  .
T Consensus         1 m~~iav~-~KGGvGKTT~~~nLA~~La--~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   77 (270)
T cd02040           1 MRQIAIY-GKGGIGKSTTTQNLSAALA--EMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEG   77 (270)
T ss_pred             CcEEEEE-eCCcCCHHHHHHHHHHHHH--hCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeec
Confidence            5789998 6999999999999999999  8999999999999986655544422211    11100    0222222  2


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      .++++++|++..........  ........+.+.+..+.  +.|||||||+++.+....+.....+  ..+|.+|+|+++
T Consensus        78 ~~~l~~ip~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~--~~yD~viID~~g~~~~~~~~~~~~~--~aaD~vlip~~p  151 (270)
T cd02040          78 FGGIKCVESGGPEPGVGCAG--RGVITAINLLEELGAYE--DDLDFVIYDVLGDVVCGGFAMPIRE--GKAQEIYIVTSG  151 (270)
T ss_pred             CCCeEEEeCCCCCCCCCCcC--cchhhHHHHHHhcCccc--cCCCEEEEecccCcccCCccccccc--ccccEEEEEecC
Confidence            37899999886554322110  00000111222333333  3499999999865531111111111  369999999999


Q ss_pred             chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347        197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC  272 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~  272 (294)
                      +..++.++.++++.+...    +.+..++|.|+...            ....+..+++.+.++.++++.||++..+.++.
T Consensus       152 ~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~------------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~  219 (270)
T cd02040         152 EMMALYAANNICKGILKYAKSGGVRLGGLICNSRNT------------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAE  219 (270)
T ss_pred             chHHHHHHHHHHHHHHHhCccCCCceEEEEEecCCC------------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHH
Confidence            999999998888777543    46677888887431            11134567777888999999999999999999


Q ss_pred             cCCccccc--CCCHHHHHHHHhhC
Q psy11347        273 DEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       273 ~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ..|+|+++  |.++++++|++|++
T Consensus       220 ~~g~pv~~~~p~~~aa~~~~~La~  243 (270)
T cd02040         220 LRGKTVIEYDPESKQADEYRELAR  243 (270)
T ss_pred             HcCCceEEecCCCHHHHHHHHHHH
Confidence            99999998  89999999999874

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.97  E-value=3.5e-29  Score=220.66  Aligned_cols=226  Identities=14%  Similarity=0.090  Sum_probs=156.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-cccc--------cCCCCcce--
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQS--------ASGWSPVF--  115 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~--------~~~~~~~~--  115 (294)
                      +++|+| +|||||||||++.|||..|+  +.|+||+++|+|++.++...+++..... +...        ...+.++.  
T Consensus         6 ~~~~~~-~GKGGVGKTt~a~NLA~~La--~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~   82 (296)
T PRK13236          6 IRQIAF-YGKGGIGKSTTSQNTLAAMA--EMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLT   82 (296)
T ss_pred             ceEEEE-ECCCcCCHHHHHHHHHHHHH--HCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhee
Confidence            588888 78999999999999999999  8999999999999999988888765532 1111        11222222  


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                      ..+|++++|++.......    .........+..+.....+.+ ||||+||+++............+  ..||.+|+|++
T Consensus        83 ~~~gv~llpa~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~-yD~vliD~~~~~~~~~~~~~~~l--~aAD~vIIvtt  155 (296)
T PRK13236         83 GFRGVKCVESGGPEPGVG----CAGRGIITAINFLEENGAYQD-LDFVSYDVLGDVVCGGFAMPIRE--GKAQEIYIVTS  155 (296)
T ss_pred             CCCCeEEEECCCCCCCCC----CcceeehhhhHHHHhcCcccc-CCEEEEeccccceeccccccchh--ccCCEEEEecC
Confidence            247999999874332211    111111112222222222234 99999999754422111111111  37999999999


Q ss_pred             CchhhHHHHHHHHHHH----HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347        196 PQEVSLLDVRKEIDFC----RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH  271 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l----~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a  271 (294)
                      ++..++.++.++++.+    ...+++..++|+||.+       ...     .....+++.+.++..++++||++..+.++
T Consensus       156 pe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~-------~~~-----~~~ile~l~~~~g~~vl~~Ip~~~~v~eA  223 (296)
T PRK13236        156 GEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRN-------VDR-----EIELIETLAKRLNTQMIHFVPRDNIVQHA  223 (296)
T ss_pred             cchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC-------Ccc-----hHHHHHHHHHHhCccceeeCCCChHHHHH
Confidence            9999998887554433    3446788899999843       111     11345777778898899999999999999


Q ss_pred             ccCCccccc--CCCHHHHHHHHhhC
Q psy11347        272 CDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       272 ~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ...|+|++.  |+++++++|++|++
T Consensus       224 ~~~~~Pv~~~~p~s~~a~~y~~La~  248 (296)
T PRK13236        224 ELRRMTVNEYAPDSNQGNEYRALAK  248 (296)
T ss_pred             HHcCCChhhcCCCCHHHHHHHHHHH
Confidence            999999998  99999999999874

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.96  E-value=5.2e-29  Score=213.61  Aligned_cols=223  Identities=26%  Similarity=0.381  Sum_probs=172.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHH-HHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc-----ccccCCCCccee--c
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLL-ARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV-----HQSASGWSPVFL--E  117 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~L-A~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~-----~~~~~~~~~~~~--~  117 (294)
                      |+++|+|.|+|||+||||+|+|| |..++  ..+++|+++|+|+..++++.+||......     ......+.++..  .
T Consensus         1 ~~~~Iav~SgKGGvGKTtitanlga~~~~--~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~   78 (262)
T COG0455           1 MTKVIAVVSGKGGVGKTTITANLGAALAA--LGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETP   78 (262)
T ss_pred             CCEEEEEEecCCCccHHHHHHhHHHHHHh--hCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecC
Confidence            57899999999999999999999 55555  77888899999999999999999998532     223344444332  3


Q ss_pred             -cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        118 -ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       118 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                       .+++++|.+.......       ......+..+++.+.  +.|||||+|+|++++.+.+..+     ..+|.+|+|++|
T Consensus        79 ~~gl~vipg~~~~~~~~-------~~~~~~~~~~~~~l~--~~~D~iliD~~aGl~~~~~~~~-----~~sd~~viVt~p  144 (262)
T COG0455          79 QDGLYVLPGGSGLEDLA-------KLDPEDLEDVIKELE--ELYDYILIDTGAGLSRDTLSFI-----LSSDELVIVTTP  144 (262)
T ss_pred             cCCEEEeeCCCChHHHh-------hcCHHHHHHHHHHHH--hcCCEEEEeCCCCccHHHHHHH-----HhcCcEEEEeCC
Confidence             8999999986654332       223447778888887  4489999999999987665544     456999999999


Q ss_pred             chhhHHHHHHHHHHHHhcCCCeeE--EEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347        197 QEVSLLDVRKEIDFCRKVNIPIIG--VVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE  274 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~~~~~~~--vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~  274 (294)
                      +..++.++..+++++.+.+....+  +|+||++..    .+..+..    ....++.  ...+.+.+||+++.+.++...
T Consensus       145 e~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~----~e~~~~~----~~~~~~~--~~~~~~~~i~~~~~v~~a~~~  214 (262)
T COG0455         145 EPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRST----KEGVDVA----ALLIQVV--KQVPVLQVIPFDPEVRRALAE  214 (262)
T ss_pred             CcchHHHHHHHHHHHHHcCCccccceEEEEecccc----cchhHHH----HHHHHHH--HhCCceeEeccChHHHHHhhc
Confidence            999999999999999999998777  999998621    0111111    1122222  234477789999999999999


Q ss_pred             Cccccc--CCCHHHHHHHHhhC
Q psy11347        275 GTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       275 g~~v~~--~~s~~~~~~~~la~  294 (294)
                      |.|+..  |++++++++++||.
T Consensus       215 g~p~~~~~p~s~as~ai~~lA~  236 (262)
T COG0455         215 GKPIVLYSPNSKASQAIKELAA  236 (262)
T ss_pred             CCcEEEeCCCCHHHHHHHHHHH
Confidence            999998  99999999999873

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.96  E-value=2.1e-29  Score=221.95  Aligned_cols=225  Identities=15%  Similarity=0.138  Sum_probs=159.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccc-----cCCCCcce--
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQS-----ASGWSPVF--  115 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~-----~~~~~~~~--  115 (294)
                      |++|+|. +||||||||++.|||..|+  +.|+||++||+|++.++...+++.....    +...     ...+.++.  
T Consensus         4 ~~~iai~-~KGGvGKTt~~~nLa~~la--~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   80 (295)
T PRK13234          4 LRQIAFY-GKGGIGKSTTSQNTLAALV--EMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKI   80 (295)
T ss_pred             ceEEEEE-CCCCccHHHHHHHHHHHHH--HCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHhee
Confidence            5899997 9999999999999999999  8999999999999988876555543321    1110     11122221  


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHH-HHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIR-QFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ..+|++++|++......      ........++ ..++.+...++|||||||+++.+....  ....+....||.+|+|+
T Consensus        81 ~~~gl~lipa~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~na--l~~~~~~~aAD~vIIPv  152 (295)
T PRK13234         81 GYKGIKCVESGGPEPGV------GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGG--FAMPIRENKAQEIYIVM  152 (295)
T ss_pred             cCCCeEEEECCCCCCCC------CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECC--CccccccccCceEEEec
Confidence            23799999987533321      1111122334 356654322349999999975542111  11101002699999999


Q ss_pred             CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      +++..++.++.++++.+.+.    +++..++|+|+.+.         ..   ..+..+++.+.++.++++.||++..+.+
T Consensus       153 ~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt---------~~---~~~~~e~l~e~~g~~ll~~Ip~d~~V~e  220 (295)
T PRK13234        153 SGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQT---------DR---ELELAEALAARLGSKLIHFVPRDNIVQH  220 (295)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC---------ch---HHHHHHHHHHHhCCceEEECCCchHHHH
Confidence            99999999999998888653    46688999997541         11   1334566777788888899999999999


Q ss_pred             hccCCccccc--CCCHHHHHHHHhhC
Q psy11347        271 HCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      +...|+|+++  |.++++++|++|++
T Consensus       221 A~~~g~pv~~~~p~s~aa~~y~~La~  246 (295)
T PRK13234        221 AELRRMTVIEYAPDSKQAGEYRALAE  246 (295)
T ss_pred             HHHcCCceEEECCCCHHHHHHHHHHH
Confidence            9999999998  89999999999874

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.96  E-value=1.7e-29  Score=212.59  Aligned_cols=223  Identities=21%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------cccCCCCc--ceecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------QSASGWSP--VFLEE  118 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------~~~~~~~~--~~~~~  118 (294)
                      |++|++.|.||||||||+|+|||..|+  ..|++|++||+||++ .+...||.+.....      .....|..  ....+
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~--~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~   77 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALA--RLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSD   77 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCC
Confidence            789999999999999999999999999  999999999999975 67778888765211      12345544  34569


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|.|.........+.. .......+.+.+..+.....||+||+|+|++.+......+     ..+|.+++|+.++.
T Consensus        78 g~~~LPfG~l~~~~~~~~~~-l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al-----~~aD~vL~V~~~Da  151 (243)
T PF06564_consen   78 GVDFLPFGQLTEAEREAFEQ-LAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQAL-----AAADLVLVVVNPDA  151 (243)
T ss_pred             CCEEEcCCCCCHHHHHHHHH-hhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHH-----HhCCeEEEEeCCCH
Confidence            99999998543322221111 1222345677777777334499999999998876554444     57999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccc
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA  278 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v  278 (294)
                      .+.....+      +.-....++|+|+++       ..+++.+   +...-+.+..+-.+.++|++|+.+.||...+.|+
T Consensus       152 ~s~~~L~q------~~l~~~~~~liNq~~-------~~s~l~~---D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v  215 (243)
T PF06564_consen  152 ASHARLHQ------RALPAGHRFLINQYD-------PASQLQR---DLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPV  215 (243)
T ss_pred             HHHHHHHH------hcccCCcEEEEeccC-------ccchHHH---HHHHHHHHhhccccceeeecchHHHHHHhcCCCc
Confidence            88654332      111224689999998       4566663   3333444555655557899999999999999999


Q ss_pred             cc--CCCHHHHHHHHhhC
Q psy11347        279 ID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       279 ~~--~~s~~~~~~~~la~  294 (294)
                      .+  |.|.++++|+.||.
T Consensus       216 ~~yaP~S~Aa~D~~~LA~  233 (243)
T PF06564_consen  216 GEYAPHSQAAEDIQTLAN  233 (243)
T ss_pred             cccCccCHHHHHHHHHHH
Confidence            99  99999999999873

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.96  E-value=1.3e-28  Score=216.04  Aligned_cols=218  Identities=17%  Similarity=0.118  Sum_probs=153.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc---------CCCCccee--cc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA---------SGWSPVFL--EE  118 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~---------~~~~~~~~--~~  118 (294)
                      |+|.+ ||||||||++.|||..|+  +.|+||++||+|++++....+.|.....+....         ..+.++..  .+
T Consensus         3 ia~~g-KGGVGKTTta~nLA~~La--~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~   79 (290)
T CHL00072          3 LAVYG-KGGIGKSTTSCNISIALA--RRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYG   79 (290)
T ss_pred             EEEEC-CCCCcHHHHHHHHHHHHH--HCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCC
Confidence            66665 999999999999999999  899999999999997544333343222111000         11112211  37


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|++..+.........  ..   ....+++.+...++|||||||+++++....  +..++  ..||.+|+|+.++.
T Consensus        80 ~l~lip~~~~~~~~~~~~~~--~~---~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a--~~aal--~~AD~viIp~~p~~  150 (290)
T CHL00072         80 GVDCVEAGGPPAGAGCGGYV--VG---ETVKLLKELNAFYEYDIILFDVLGDVVCGG--FAAPL--NYADYCIIITDNGF  150 (290)
T ss_pred             CeEEEeCCCCCCccchhhcc--cH---HHHHHHHHhhccccCCEEEEecCCcceech--hhhhh--hcCCEEEEEecCCH
Confidence            89999988765433321110  00   111233333211239999999987764321  11223  57999999999999


Q ss_pred             hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347        199 VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE  274 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~  274 (294)
                      .+++++.++++.++..    +++..++|+||++.               ...++++.+.++.++++.||++..+.++...
T Consensus       151 ~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~---------------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~  215 (290)
T CHL00072        151 DALFAANRIAASVREKARTHPLRLAGLVGNRTSK---------------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVK  215 (290)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc---------------hhHHHHHHHHcCCceEEECCCChHHHHHHhC
Confidence            9999999999888654    46678999999752               1245667778899999999999999999999


Q ss_pred             Cccccc--CCCH----HHHHHHHhhC
Q psy11347        275 GTSAID--TPSA----CVDAIQQIVQ  294 (294)
Q Consensus       275 g~~v~~--~~s~----~~~~~~~la~  294 (294)
                      |+|+++  |+++    ++++|++|++
T Consensus       216 g~pv~~~~p~s~~~~~~a~~y~~La~  241 (290)
T CHL00072        216 GKTLFEMVESEPSLNYVCDYYLNIAD  241 (290)
T ss_pred             CCceEEeCCCCcchhHHHHHHHHHHH
Confidence            999998  8888    5899999874

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.96  E-value=7.9e-29  Score=215.61  Aligned_cols=226  Identities=16%  Similarity=0.153  Sum_probs=157.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC-----CCCcc--eeccC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS-----GWSPV--FLEEN  119 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~-----~~~~~--~~~~~  119 (294)
                      |++|+|. +||||||||+|.|||.+|+  +.| ||++||+|++++.+..+++.....+.....     .+..+  ...++
T Consensus         2 ~~~iav~-~KGGvGKTT~a~nLA~~La--~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (264)
T PRK13231          2 MKKIAIY-GKGGIGKSTTVSNMAAAYS--NDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNG   77 (264)
T ss_pred             ceEEEEE-CCCCCcHHHHHHHHhcccC--CCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCC
Confidence            6889999 6999999999999999999  889 999999999986555555543221111110     12221  12468


Q ss_pred             eEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347        120 LSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      ++++|++........  ..........+.+.+..+.  ++|||||||+++.+....+.  ..+....+|.+|+|++++..
T Consensus        78 l~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~yD~ViIDt~~~~~~~~~~--~~~~~~aaD~vlip~~p~~~  151 (264)
T PRK13231         78 ILCVESGGPEPGVGC--AGRGVIVAMNLLENLGVFD--EDIDVVIYDVLGDVVCGGFS--VPLREDYADEVYIVTSGEYM  151 (264)
T ss_pred             eEEEEcCCCCCCCCC--cCceeeehhhhHHhhcccc--CCCCEEEEecCCCceEcccc--ccccccccceeEEEecCchh
Confidence            889988744322110  0000001112344555555  44999999998755211111  01101379999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcccc
Q psy11347        200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI  279 (294)
Q Consensus       200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~  279 (294)
                      ++.++.++++.++..+.+..++|.|+.+.       .     ...+..+++.+.++.++++.||++..+.++...|+|++
T Consensus       152 si~~~~~~~~~i~~~~~~~~~vv~~~~~~-------~-----~~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~  219 (264)
T PRK13231        152 SLYAANNIARGIKKLKGKLGGIICNCRGI-------D-----NEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVV  219 (264)
T ss_pred             HHHHHHHHHHHHHHcCCcceEEEEcCCCC-------c-----cHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCcee
Confidence            99999999999987776667888887541       1     12345677777888888899999999999999999999


Q ss_pred             c--CCCHHHHHHHHhhC
Q psy11347        280 D--TPSACVDAIQQIVQ  294 (294)
Q Consensus       280 ~--~~s~~~~~~~~la~  294 (294)
                      +  |.++++++|++|++
T Consensus       220 ~~~~~~~aa~~~~~la~  236 (264)
T PRK13231        220 ETFPESEQASVYRKLAN  236 (264)
T ss_pred             EeCCCChHHHHHHHHHH
Confidence            8  99999999999874

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=212.98  Aligned_cols=221  Identities=14%  Similarity=0.090  Sum_probs=154.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccc------ccCCCCcce
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQ------SASGWSPVF  115 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~------~~~~~~~~~  115 (294)
                      |+++|+|. +||||||||++.|||.+|+  ..|+||++||+|+|+ ++...++.....    +..      ....+.++.
T Consensus         1 m~~iIav~-~KGGVGKTT~~~nLA~~la--~~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i   76 (270)
T PRK13185          1 MALVLAVY-GKGGIGKSTTSSNLSAAFA--KLGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFV   76 (270)
T ss_pred             CceEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHhe
Confidence            57899998 6999999999999999999  899999999999986 444555432211    110      011122221


Q ss_pred             --eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347        116 --LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV  193 (294)
Q Consensus       116 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv  193 (294)
                        ..+|++++|++..+.+......     .......++..+...++|||||||+++......  +..++  ..+|.+|+|
T Consensus        77 ~~~~~~l~~ip~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~--~~~~l--~~AD~viip  147 (270)
T PRK13185         77 YEGYNGVDCVEAGGPPAGTGCGGY-----VVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG--FAAPL--QYADYALIV  147 (270)
T ss_pred             eeCCCCcEEEECCCCCCCCCccch-----hHHHHHHHHHhcCccccCCEEEEecCCCcccCc--ccchh--hhCcEEEEE
Confidence              1379999998866543321110     001111233332222449999999987664321  11222  479999999


Q ss_pred             cCCchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        194 TTPQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       194 ~~~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      +.++..++..+.++++.++.    .+++..++|+|+++.               ....+++.+.++.++++.||++..+.
T Consensus       148 ~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~---------------~~~~~~~~~~~g~~vl~~Ip~~~~i~  212 (270)
T PRK13185        148 TANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG---------------TDLIDKFNEAVGLKVLAHVPDLDAIR  212 (270)
T ss_pred             ecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh---------------HHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999999998887753    355678999999651               23457788888999999999999999


Q ss_pred             hhccCCccccc--CC----CHHHHHHHHhhC
Q psy11347        270 RHCDEGTSAID--TP----SACVDAIQQIVQ  294 (294)
Q Consensus       270 ~a~~~g~~v~~--~~----s~~~~~~~~la~  294 (294)
                      ++...|+|+++  |+    ++++++|++|++
T Consensus       213 ~A~~~G~pv~~~~~~~~~~~~aa~~~~~la~  243 (270)
T PRK13185        213 RSRLKGKTLFEMEETDPGLEEVQNEYLRLAE  243 (270)
T ss_pred             hHHHcCCcHhhhCcCCccchHHHHHHHHHHH
Confidence            99999999998  54    358888988863

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.96  E-value=1.7e-28  Score=215.14  Aligned_cols=228  Identities=17%  Similarity=0.149  Sum_probs=150.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc-------CCCCcce--ec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA-------SGWSPVF--LE  117 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~-------~~~~~~~--~~  117 (294)
                      |++|+|. +||||||||+|.|||.+|+  ..|+||++||+|++++....+.+.....+....       ..+.++.  ..
T Consensus         1 ~~~i~~~-gKGGVGKTT~a~nLA~~La--~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~   77 (279)
T PRK13230          1 MRKFCFY-GKGGIGKSTTVCNIAAALA--ESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGF   77 (279)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHH--hCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence            6789999 7999999999999999999  899999999999987654443332111111111       1112211  24


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      ++++++|++..........  ........+.+.+..+.. .+|||||||+++......+.....+  ..||.+|+|++++
T Consensus        78 ~~l~lipa~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~yD~viID~~~~~~~~~l~~~~~~--~aAD~vlIp~~p~  152 (279)
T PRK13230         78 NGIYCVESGGPEPGYGCAG--RGVITAIDLLKKLGVFEE-LGPDVVIYDILGDVVCGGFAMPLQK--GLADDVYIVTTCD  152 (279)
T ss_pred             CCcEEEECCCCCCCCCcCC--cchhhHHHHHHHcCcccc-cCCCEEEEecCCccccCCccccccc--cccceEEEeccch
Confidence            7899999875543211000  000000011122222221 2399999999865431111111112  3689999999999


Q ss_pred             hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347        198 EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD  273 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~  273 (294)
                      ..++.++..+++.+...    +.++.+++.|+-.          ...  ..+..+++.+.++.++++.||++..+.++..
T Consensus       153 ~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~----------~~~--~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~  220 (279)
T PRK13230        153 PMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS----------VID--APDIVEEFAKKIGTNVIGKIPMSNIITEAEI  220 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC----------CCc--hhHHHHHHHHHhCCcEEEECCCChHHHHHHH
Confidence            99999999888777533    4556667655311          111  1245677888899999999999999999999


Q ss_pred             CCccccc--CCCHHHHHHHHhhC
Q psy11347        274 EGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       274 ~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .|+|+++  |.++++++|++|++
T Consensus       221 ~g~pv~~~~p~~~~a~~y~~La~  243 (279)
T PRK13230        221 YGKTVIEYAPDSEISNIFRELAE  243 (279)
T ss_pred             cCCeEEEeCCCCHHHHHHHHHHH
Confidence            9999998  89999999999874

>PRK10037 cell division protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=212.50  Aligned_cols=219  Identities=14%  Similarity=0.104  Sum_probs=147.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcc--eecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPV--FLEE  118 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~--~~~~  118 (294)
                      |++|+|.|.||||||||++.|||..|+  ..|+||++||+|+++ ++...||.....      .......|.+.  ...+
T Consensus         1 ~~~iav~n~KGGvGKTT~a~nLA~~La--~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
T PRK10037          1 MAILGLQGVRGGVGTTSITAALAWSLQ--MLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTS   77 (250)
T ss_pred             CcEEEEecCCCCccHHHHHHHHHHHHH--hcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccccC
Confidence            569999999999999999999999999  899999999999985 666667764321      01111233332  2237


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|++. ..................+.+.++.++..+.|||||||+||+.+......+     ..||.+|+|+.++.
T Consensus        78 ~l~iip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al-----~aaD~vlvpv~~~~  151 (250)
T PRK10037         78 QLDLLPFGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLL-----SLCDHSLAIVNVDA  151 (250)
T ss_pred             CeEEEcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHH-----HhCCEEEEEcCcCH
Confidence            899999862 111110000000011124667777775213499999999999875444333     57999999999987


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHh---hcCCcee-eccCCCchhhhhccC
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCA---ELSVPFL-GSVPIDPLVTRHCDE  274 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~g~~~l-~~Ip~~~~~~~a~~~  274 (294)
                      .+.      ++..+........+++|+++.       ..       +..+++.+   ..+.+++ ..||+++.+.++...
T Consensus       152 ~~~------i~~~~~~~~~~~~i~~n~~~~-------~~-------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~  211 (250)
T PRK10037        152 NCH------IRLHQQALPAGAHILINDLRI-------GS-------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAA  211 (250)
T ss_pred             HHH------HhhhccccCCCeEEEEecCCc-------cc-------HHHHHHHHHHHHhcccccCccccCchhHHHHHhc
Confidence            652      333333222345678888752       11       22233333   2366677 489999999999999


Q ss_pred             Cccccc--CCCHHHHHHHHhhC
Q psy11347        275 GTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       275 g~~v~~--~~s~~~~~~~~la~  294 (294)
                      |+|+++  |+++++++|++|++
T Consensus       212 g~~v~~~~~~s~aa~~~~~l~~  233 (250)
T PRK10037        212 KQPLGEYRSDSLAAEEILTLAN  233 (250)
T ss_pred             CCcchhcCCcCHHHHHHHHHHH
Confidence            999998  99999999999873

>TIGR01287 nifH nitrogenase iron protein

Probab=99.96  E-value=5.2e-28  Score=211.66  Aligned_cols=226  Identities=16%  Similarity=0.155  Sum_probs=151.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc----CCCCcce--ec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA----SGWSPVF--LE  117 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~----~~~~~~~--~~  117 (294)
                      +.|+|. |||||||||+|.|||..|+  ..|+||++||+|+|+++...+++.....    +....    ..+.+..  ..
T Consensus         1 ~~ia~~-gKGGVGKTT~a~nLA~~La--~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~   77 (275)
T TIGR01287         1 RQIAIY-GKGGIGKSTTTQNIAAALA--EMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGF   77 (275)
T ss_pred             CeeEEe-CCCcCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCC
Confidence            357776 6999999999999999999  8999999999999987655554533321    11110    1112222  23


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      ++++++|++........  ..........+.+.+..+.  ++|||||||+++......+.....+  ..+|.+|+|++++
T Consensus        78 ~~l~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~yD~iiIDt~~~~~~~~~~~~~~~--~aAD~viip~~p~  151 (275)
T TIGR01287        78 GGIRCVESGGPEPGVGC--AGRGVITAINLLEELGAYE--DDLDFVFYDVLGDVVCGGFAMPIRE--GKAQEIYIVTSGE  151 (275)
T ss_pred             CCEEEEeCCCCCccCCC--ccchhhhHHHHHHHhhhhh--ccCCEEEEeccCcceecceeecccc--ccccEEEEEecch
Confidence            68999998754432110  0000000001222234444  3499999999865532111111111  3689999999999


Q ss_pred             hhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347        198 EVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD  273 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~  273 (294)
                      ..++.++.++++.+..    .+.+..++|.|+.+            .....+..+++.+.++.++++.||++..+.+|..
T Consensus       152 ~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~------------~~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~  219 (275)
T TIGR01287       152 MMALYAANNICKGILKYAKSGGVRLGGLICNSRN------------VDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEI  219 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC------------CchHHHHHHHHHHHhCCceEEECCCChHHHHHHH
Confidence            9999999888776532    35566778888632            1112334567777888888999999999999999


Q ss_pred             CCccccc--CCCHHHHHHHHhhC
Q psy11347        274 EGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       274 ~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .|+|+++  |.++++++|+++++
T Consensus       220 ~g~pv~~~~p~s~~a~~~~~la~  242 (275)
T TIGR01287       220 RKMTVIEYDPESEQANEYRELAK  242 (275)
T ss_pred             cCCceEEeCCCCHHHHHHHHHHH
Confidence            9999998  99999999999874

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.96  E-value=1e-27  Score=209.12  Aligned_cols=218  Identities=17%  Similarity=0.122  Sum_probs=150.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c---ccc------ccCCCCcce--e
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q---VHQ------SASGWSPVF--L  116 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~---~~~------~~~~~~~~~--~  116 (294)
                      +|+|. +||||||||+|.|||.+|+  +.|+||++||+|++.+ +...|+.... .   +..      ....+.++.  .
T Consensus         2 ~i~~~-gKGGVGKTT~~~nLA~~La--~~g~rVLliD~D~q~~-~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~   77 (268)
T TIGR01281         2 ILAVY-GKGGIGKSTTSSNLSVAFA--KLGKRVLQIGCDPKHD-STFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTG   77 (268)
T ss_pred             EEEEE-cCCcCcHHHHHHHHHHHHH--hCCCeEEEEecCcccc-ccceecCCCCCcHHHHHHhccccccCCCHHHeeEeC
Confidence            46777 7999999999999999999  8999999999999874 4445532221 1   110      011122222  2


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      .++++++|++..+......... ..    ....+++.+...++|||||||+++.+.....  ...+  ..+|.+|+|+.+
T Consensus        78 ~~~l~~i~~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~--~~~l--~aAD~vlip~~~  148 (268)
T TIGR01281        78 YGGVDCVEAGGPPAGSGCGGYV-VG----ETVKLLKEHHILDDYDVILFDVLGDVVCGGF--ATPL--QYADYALVVAAN  148 (268)
T ss_pred             CCCeEEEecCCCCCCCccccee-hh----hhHHHhhhccccccCCEEEEecCCccccCcc--ccch--hhcCEEEEEecC
Confidence            3789999988654332211110 01    1112233322123499999999876642211  1122  479999999999


Q ss_pred             chhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347        197 QEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC  272 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~  272 (294)
                      +..++..+.++++.+.+    .+++..++|+||++.+               +..+++.+.++.++++.||++..+.++.
T Consensus       149 ~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---------------~~~~~~~~~~~~~vl~~I~~~~~v~~A~  213 (268)
T TIGR01281       149 DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT---------------DLIERFNERVGMPVLGVVPDLEVIRRSR  213 (268)
T ss_pred             chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH---------------HHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence            99999999999887764    3566789999998631               3456677778999999999999999999


Q ss_pred             cCCccccc--CCC----HHHHHHHHhhC
Q psy11347        273 DEGTSAID--TPS----ACVDAIQQIVQ  294 (294)
Q Consensus       273 ~~g~~v~~--~~s----~~~~~~~~la~  294 (294)
                      ..|+|+++  |++    .++++|++|++
T Consensus       214 ~~G~pV~~~~~~~~~~~~~a~~~~~la~  241 (268)
T TIGR01281       214 VKGKTLFEMEESGPELAAVTQEYLRMAE  241 (268)
T ss_pred             HCCCCHHHhCcccccchHHHHHHHHHHH
Confidence            99999998  544    46788888863

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.96  E-value=2.5e-28  Score=223.26  Aligned_cols=226  Identities=17%  Similarity=0.146  Sum_probs=159.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc-------cc------ccCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV-------HQ------SASGWS  112 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~-------~~------~~~~~~  112 (294)
                      .+++|+|.+.||||||||+|.|||..|+  ..|+||++||+|+|+ ++..+||..+...       ..      ....+.
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA--~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~  196 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLA--LQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLR  196 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHH--hcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHH
Confidence            4689999999999999999999999999  899999999999984 7788888654310       00      011222


Q ss_pred             cce---eccCeEEEecccccCCCCccee--e--c-Cc--cchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        113 PVF---LEENLSVMSIGFLLNSPDDAVI--W--R-GP--KKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       113 ~~~---~~~~l~~~~~~~~~~~~~~~~~--~--~-~~--~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      ++.   ..+|++++|++..+...+....  .  . ..  .....+++.++.+.  ++|||||||+||+++..   +.+++
T Consensus       197 ~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~--~~yD~IiIDtpP~l~~~---t~~al  271 (405)
T PRK13869        197 DVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA--DDYDVVVIDCPPQLGFL---TLSGL  271 (405)
T ss_pred             HheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh--ccCCEEEEECCCchhHH---HHHHH
Confidence            222   2378999998765533221110  0  0 00  01235788888886  45999999999999854   44444


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHH-------Hhc--C--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHH
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFC-------RKV--N--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMC  251 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l-------~~~--~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~  251 (294)
                        ..+|.+|+|+.++..++.++..+++.+       .+.  +  ...+++|+|+++.       +...+   .+..+.+.
T Consensus       272 --~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~-------~~~~~---~~~~~~l~  339 (405)
T PRK13869        272 --CAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP-------QDAPQ---TKVAALLR  339 (405)
T ss_pred             --HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC-------CCcHH---HHHHHHHH
Confidence              579999999999999999988887632       222  2  3467899999973       23323   33455566


Q ss_pred             hhcCCcee-eccCCCchhhhhccCCccccc--CCCHHHHHHHH
Q psy11347        252 AELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQ  291 (294)
Q Consensus       252 ~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~~~  291 (294)
                      +.+|-.++ ..||.+..+.++...|+||++  |....++.|.+
T Consensus       340 ~~~~~~vl~~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~r  382 (405)
T PRK13869        340 NMFEDHVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDR  382 (405)
T ss_pred             HHhhhhhccCcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHH
Confidence            66676666 689999999999999999999  55444444444

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.96  E-value=3.4e-27  Score=191.83  Aligned_cols=169  Identities=61%  Similarity=1.011  Sum_probs=133.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      +|+|+|+|||+||||+|.|||..++  ..|+||++||+|++++++..+++                              
T Consensus         1 vi~v~s~kgG~GKTt~a~~LA~~la--~~g~~vllvD~D~q~~~~~~~~~------------------------------   48 (169)
T cd02037           1 VIAVMSGKGGVGKSTVAVNLALALA--KLGYKVGLLDADIYGPSIPKMWR------------------------------   48 (169)
T ss_pred             CEEEecCCCcCChhHHHHHHHHHHH--HcCCcEEEEeCCCCCCCchHHHh------------------------------
Confidence            5899999999999999999999999  89999999999998865433200                              


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                                 .......++.+++.+...+ ||+||+|+||++++....... +  ..+|.+++|+.++..++..+.+++
T Consensus        49 -----------~~~~~~~l~~~~~~~~~~~-yD~VIiD~pp~~~~~~~~~~~-~--~~ad~viiV~~p~~~s~~~~~~~~  113 (169)
T cd02037          49 -----------GPMKMGAIKQFLTDVDWGE-LDYLVIDMPPGTGDEHLTLAQ-S--LPIDGAVIVTTPQEVALDDVRKAI  113 (169)
T ss_pred             -----------CcchHHHHHHHHHHhhcCC-CCEEEEeCCCCCcHHHHHHHh-c--cCCCeEEEEECCchhhHHHHHHHH
Confidence                       0001125566666654334 999999999998765432221 1  368999999999999999999999


Q ss_pred             HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347        209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP  266 (294)
Q Consensus       209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~  266 (294)
                      +.+++.+.+..++|+||+...++.|.++.+.+.  ....+++.+.++.++++.||+++
T Consensus       114 ~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ip~~~  169 (169)
T cd02037         114 DMFKKVNIPILGVVENMSYFVCPHCGKKIYIFG--KGGGEKLAEELGVPLLGKIPLDP  169 (169)
T ss_pred             HHHHhcCCCeEEEEEcCCcccCCCCCCcccccC--CccHHHHHHHcCCCEEEeccCCC
Confidence            999999999999999999876666666655542  24578999999999999999975

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.95  E-value=1.7e-27  Score=207.52  Aligned_cols=217  Identities=16%  Similarity=0.128  Sum_probs=150.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccc------ccCCCCccee--
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQ------SASGWSPVFL--  116 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~------~~~~~~~~~~--  116 (294)
                      +|+|. +||||||||+|.|||.+|+  ..|+||++||+|+++ ++...++.....    +..      ......++..  
T Consensus         2 ~i~v~-gKGGvGKTT~a~nLA~~la--~~G~rvlliD~Dpq~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~   77 (267)
T cd02032           2 VLAVY-GKGGIGKSTTSSNLSVALA--KRGKKVLQIGCDPKH-DSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEG   77 (267)
T ss_pred             EEEEe-cCCCCCHHHHHHHHHHHHH--HCCCcEEEEecCCCC-CcceeccCCCCCCHHHHHHhccccccCCChhheEEEC
Confidence            46777 6999999999999999999  899999999999986 445555432111    110      0111222222  


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-HHHHHHHhhcCCCcEEEEecC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-HLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-~~~~~~~l~~~~ad~vliv~~  195 (294)
                      .++++++|++..+.........     ......+++.+...+.|||||||+++..... ....+     ..||.+|+|+.
T Consensus        78 ~~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~~~~al-----~~aD~vlip~~  147 (267)
T cd02032          78 YGGVDCVEAGGPPAGAGCGGYV-----VGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL-----NYADYALIVTD  147 (267)
T ss_pred             CCCcEEEEcCCCCCCccccchH-----HHHHHHHHHHccccccCCEEEEeCCCCcccccchhhh-----hhcCEEEEEec
Confidence            3789999987654332211100     0111223333322234999999998776432 22222     47999999999


Q ss_pred             CchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347        196 PQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH  271 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a  271 (294)
                      ++..++..+.++++.++.    .+++..++|+||++.               ...++++.+.++.++++.||+++.+.++
T Consensus       148 p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~---------------~~~i~~~~~~~~~~vl~~Ip~~~~v~~A  212 (267)
T cd02032         148 NDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK---------------TDLIDKFVEAVGMPVLAVLPLIEDIRRS  212 (267)
T ss_pred             CCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH---------------HHHHHHHHHhCCCCEEEEecCCccccHH
Confidence            999999999998887763    356678899999862               1245677778899999999999999999


Q ss_pred             ccCCccccc--CCCHH----HHHHHHhhC
Q psy11347        272 CDEGTSAID--TPSAC----VDAIQQIVQ  294 (294)
Q Consensus       272 ~~~g~~v~~--~~s~~----~~~~~~la~  294 (294)
                      ...|+|+++  |.++.    +++|++|++
T Consensus       213 ~~~G~~v~e~~~~~~~a~e~a~~y~~La~  241 (267)
T cd02032         213 RVKGKTLFEMDESDEELAYRCDYYLLIAD  241 (267)
T ss_pred             HHcCCCHHHhCcccccccHHHHHHHHHHH
Confidence            999999998  65654    567888763

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.95  E-value=1.8e-27  Score=194.93  Aligned_cols=177  Identities=31%  Similarity=0.430  Sum_probs=140.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      +|+|+++|||+||||+|.|||.+|+  .+|++|+++|+|++.+++..+++.+...         .      .        
T Consensus         1 ~i~v~~~kgG~GKtt~a~~la~~l~--~~g~~vllvD~D~~~~~~~~~~~~~~~~---------~------~--------   55 (179)
T cd02036           1 VIVVTSGKGGVGKTTTTANLGTALA--QLGYKVVLIDADLGLRNLDLILGLENRV---------V------Y--------   55 (179)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCCchhhccccccC---------C------c--------
Confidence            4899999999999999999999999  8999999999999877776665543210         0      0        


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                                       .+.+.+   .    -|+||||+||+........+     ..+|.+|+|+.++..++..+.+++
T Consensus        56 -----------------~~~~~~---~----~d~viiD~p~~~~~~~~~~l-----~~ad~viiv~~~~~~s~~~~~~~~  106 (179)
T cd02036          56 -----------------TLHDVL---A----GDYILIDSPAGIERGFITAI-----APADEALLVTTPEISSLRDADRVK  106 (179)
T ss_pred             -----------------chhhcc---c----CCEEEEECCCCCcHHHHHHH-----HhCCcEEEEeCCCcchHHHHHHHH
Confidence                             000010   0    18999999999876544433     579999999999999999999999


Q ss_pred             HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc--CCCHHH
Q psy11347        209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACV  286 (294)
Q Consensus       209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~--~~s~~~  286 (294)
                      +.++..+.+..++|+|+++.+       ....   .+..+++.+.++.++++.||+++.+.++...|+++++  |.++++
T Consensus       107 ~~~~~~~~~~~~iv~N~~~~~-------~~~~---~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~  176 (179)
T cd02036         107 GLLEALGIKVVGVIVNRVRPD-------MVEG---GDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAA  176 (179)
T ss_pred             HHHHHcCCceEEEEEeCCccc-------ccch---hhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhh
Confidence            999988888899999998732       2111   2234667777899999999999999999999999999  889887


Q ss_pred             HHH
Q psy11347        287 DAI  289 (294)
Q Consensus       287 ~~~  289 (294)
                      ++|
T Consensus       177 ~~~  179 (179)
T cd02036         177 QAY  179 (179)
T ss_pred             hcC
Confidence            754

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.95  E-value=1e-26  Score=207.86  Aligned_cols=217  Identities=18%  Similarity=0.227  Sum_probs=167.4

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------cccCCCC-----
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------QSASGWS-----  112 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------~~~~~~~-----  112 (294)
                      ...+++|+|+|+|||+||||+|.|||.+|+  ..|++|+++|+|+++++++.+||.+.....      .....++     
T Consensus        90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la--~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~  167 (322)
T TIGR03815        90 PARGVVVAVIGGRGGAGASTLAAALALAAA--RHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALR  167 (322)
T ss_pred             CCCceEEEEEcCCCCCcHHHHHHHHHHHHH--hcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHH
Confidence            345899999999999999999999999999  899999999999999988888887653211      1011111     


Q ss_pred             -cceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347        113 -PVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI  191 (294)
Q Consensus       113 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl  191 (294)
                       .+...+++.+++.+....         .......++.+++.+.  +.|||||||+|++........+     ..+|.+|
T Consensus       168 ~~~~~~~~l~vl~~~~~~~---------~~~~~~~l~~~l~~l~--~~~D~VIID~p~~~~~~~~~~L-----~~AD~vl  231 (322)
T TIGR03815       168 DALPRRGGLSVLSWGRAVG---------AALPPAAVRAVLDAAR--RGGDLVVVDLPRRLTPAAETAL-----ESADLVL  231 (322)
T ss_pred             HhCCCcCCeEEEecCCCCc---------CCCCHHHHHHHHHHHH--hcCCEEEEeCCCCCCHHHHHHH-----HHCCEEE
Confidence             112246888888765431         1123456788888886  4499999999999876544444     5799999


Q ss_pred             EecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347        192 VVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH  271 (294)
Q Consensus       192 iv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a  271 (294)
                      +|+.++..++..+.++++.+...+.+ +.+|+|+..        ...+      ..+++.+.+|.++++.||++..+.++
T Consensus       232 iV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~--------~~~~------~~~~i~~~lg~~v~~~Ip~d~~v~~a  296 (322)
T TIGR03815       232 VVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPA--------PAGL------DPEEIAESLGLPLLGEVRDQRGLARA  296 (322)
T ss_pred             EEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC--------CCCC------CHHHHHHHhCCCceeeCCCChhHHHH
Confidence            99999999999999999999876644 567777643        1112      24677778899999999999999999


Q ss_pred             ccCCccccc-CCCHHHHHHHHhh
Q psy11347        272 CDEGTSAID-TPSACVDAIQQIV  293 (294)
Q Consensus       272 ~~~g~~v~~-~~s~~~~~~~~la  293 (294)
                      .+.|+++.. +++++++.+.++.
T Consensus       297 ~~~G~~~~~~~~~~~~~~~~~~l  319 (322)
T TIGR03815       297 LERGGLPAASRRRPLGRAAAEVL  319 (322)
T ss_pred             HhCCCCcCCCCCCHHHHHHHHHH
Confidence            999998877 9999999888763

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PHA02518 ParA-like protein; Provisional

Probab=99.95  E-value=6.1e-27  Score=196.95  Aligned_cols=195  Identities=21%  Similarity=0.305  Sum_probs=142.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ++|+|.+.||||||||+|.|||.+|+  ..|++|++||+|++++. ...++....               .. .+++...
T Consensus         1 ~ii~v~~~KGGvGKTT~a~~la~~la--~~g~~vlliD~D~q~~~-~~~~~~~~~---------------~~-~~i~~~~   61 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLH--ADGHKVLLVDLDPQGSS-TDWAEAREE---------------GE-PLIPVVR   61 (211)
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCh-HHHHHhccc---------------CC-CCCchhh
Confidence            57999999999999999999999999  89999999999998743 333322110               00 1111100


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE  207 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~  207 (294)
                                     ....+...+..+.  +.|||||||+||+.+......+     ..+|.||+|+.++..++..+.++
T Consensus        62 ---------------~~~~~~~~l~~~~--~~~d~viiD~p~~~~~~~~~~l-----~~aD~viip~~ps~~~~~~~~~~  119 (211)
T PHA02518         62 ---------------MGKSIRADLPKVA--SGYDYVVVDGAPQDSELARAAL-----RIADMVLIPVQPSPFDIWAAPDL  119 (211)
T ss_pred             ---------------ccHHHHHHHHHHh--ccCCEEEEeCCCCccHHHHHHH-----HHCCEEEEEeCCChhhHHHHHHH
Confidence                           0113455566654  3499999999999875544444     57999999999999999999888


Q ss_pred             HHHHHhc-----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceee-ccCCCchhhhhccCCccccc-
Q psy11347        208 IDFCRKV-----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLG-SVPIDPLVTRHCDEGTSAID-  280 (294)
Q Consensus       208 l~~l~~~-----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~-~Ip~~~~~~~a~~~g~~v~~-  280 (294)
                      ++.++..     +.+..++|.|++..       +....    ..+.++++..+.+++. .|+++..+.++.+.|+++++ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~iv~n~~~~-------~~~~~----~~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~  188 (211)
T PHA02518        120 VELIKARQEVTDGLPKFAFIISRAIK-------NTQLY----REARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLEL  188 (211)
T ss_pred             HHHHHHHHhhCCCCceEEEEEeccCC-------cchHH----HHHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEec
Confidence            8877643     45567888898752       22221    2345555566888774 56777999999999999998 


Q ss_pred             -CCCHHHHHHHHhhC
Q psy11347        281 -TPSACVDAIQQIVQ  294 (294)
Q Consensus       281 -~~s~~~~~~~~la~  294 (294)
                       +.+++.++|++|++
T Consensus       189 ~~~~~a~~~~~~l~~  203 (211)
T PHA02518        189 PEDDKAAEEIIQLVK  203 (211)
T ss_pred             CCCchHHHHHHHHHH
Confidence             89999999999874

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.95  E-value=2.3e-27  Score=205.83  Aligned_cols=227  Identities=19%  Similarity=0.280  Sum_probs=160.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhcccccc---c---ccccc-CC---CCcc
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNE---Q---VHQSA-SG---WSPV  114 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~---~---~~~~~-~~---~~~~  114 (294)
                      ||++|+|.+.||||||||+|.|||.+|+  ..+ +||++||+||| +++...+|.+..   .   +.... ..   ....
T Consensus         1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La--~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
T COG1192           1 MMKIIAVANQKGGVGKTTTAVNLAAALA--KRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYT   77 (259)
T ss_pred             CCEEEEEEecCCCccHHHHHHHHHHHHH--HhcCCcEEEEeCCCc-chhhHhcCCCcccchhHHHHHhcccccccchhcc
Confidence            5899999999999999999999999999  444 89999999998 577888887655   1   11111 11   1111


Q ss_pred             eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ...++++++|+...... ..............++.+++.+.  ++|||||||+||+.+..   +.+++  ..+|++++|+
T Consensus        78 ~~~~~ld~ips~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~--~~yD~iiID~pp~l~~l---~~nal--~asd~vlIP~  149 (259)
T COG1192          78 VVIEGLDLIPSNIDLAE-GAEIELNAVAKELLLKRLLDPVK--DDYDYIIIDTPPSLGVL---TLNAL--AAADHVLIPV  149 (259)
T ss_pred             cCCCCceEecCChHHHh-HHHHHHhhhhHHHHHHHHhhhhc--cCCCEEEECCCCchhHH---HHHHH--HHcCeeEEec
Confidence            13478999998766542 10111111223335566666444  45999999999999643   33444  5789999999


Q ss_pred             CCchhhHHHHHHHHHHHHhcC------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCch
Q psy11347        195 TPQEVSLLDVRKEIDFCRKVN------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPL  267 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~~------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~  267 (294)
                      .++..++..+..++..+....      ....++++|+++.+       ...   ..+..+...+.++.+++ ..||.+..
T Consensus       150 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~  219 (259)
T COG1192         150 QPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSR-------TKL---ADEVLQELKQLLGDPVLKTKIPRRVA  219 (259)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCC-------cch---HHHHHHHHHHHhccccccccCccccc
Confidence            999999999998877775432      25678999998742       221   23344555555555554 68999999


Q ss_pred             hhhhccCCccccc--CCCHHHHHHHHhh
Q psy11347        268 VTRHCDEGTSAID--TPSACVDAIQQIV  293 (294)
Q Consensus       268 ~~~a~~~g~~v~~--~~s~~~~~~~~la  293 (294)
                      +.++...|.++..  ++++.++++.+++
T Consensus       220 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~  247 (259)
T COG1192         220 YREAAAEGKPLYEYDPKSKAAEEYYELA  247 (259)
T ss_pred             HHhHHHcCCCceecCCcchHHHHHHHHH
Confidence            9999999999988  7788998888876

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.94  E-value=7.1e-26  Score=185.63  Aligned_cols=215  Identities=23%  Similarity=0.335  Sum_probs=160.4

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc--cc------cc----ccCCCCc-----
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE--QV------HQ----SASGWSP-----  113 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~--~~------~~----~~~~~~~-----  113 (294)
                      ..++||||+||||+|+.|+..|. .+.|++|++||+|+ ..+++..||.+.+  ++      .+    ....+..     
T Consensus         3 IaI~GKGG~GKTtiaalll~~l~-~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk   80 (255)
T COG3640           3 IAITGKGGVGKTTIAALLLKRLL-SKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK   80 (255)
T ss_pred             EEEecCCCccHHHHHHHHHHHHH-hcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence            34569999999999999777766 14559999999999 6799999999874  10      00    0001000     


Q ss_pred             -------c-----eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347        114 -------V-----FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY  181 (294)
Q Consensus       114 -------~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~  181 (294)
                             +     ...++++++-.|.......    -+.......++++++.+...+ ||+||+|+-+++.-.-..+.  
T Consensus        81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~Ge----GC~Cp~~allR~~l~~l~~~~-~e~VivDtEAGiEHfgRg~~--  153 (255)
T COG3640          81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGE----GCACPMNALLRRLLRHLILNR-YEVVIVDTEAGIEHFGRGTI--  153 (255)
T ss_pred             cCcchhhhhHHHhhhcCCccEEEeccccCCCC----cccchHHHHHHHHHHHHhccc-CcEEEEecccchhhhccccc--
Confidence                   0     0114566666553321111    112234458899999998655 99999999998854333344  


Q ss_pred             hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeec
Q psy11347        182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGS  261 (294)
Q Consensus       182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~  261 (294)
                         ..+|.+|+|++|+..++..+.++-++.++.+++.+++|+||++.       .       ...........+.+++++
T Consensus       154 ---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e-------~-------e~~~~~~~~~~~~~vlg~  216 (255)
T COG3640         154 ---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE-------E-------EELLRELAEELGLEVLGV  216 (255)
T ss_pred             ---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc-------h-------hHHHHhhhhccCCeEEEE
Confidence               68999999999999999999999999999999999999999872       1       234567777889999999


Q ss_pred             cCCCchhhhhccCCccccc-CCCHHHHHHHHhh
Q psy11347        262 VPIDPLVTRHCDEGTSAID-TPSACVDAIQQIV  293 (294)
Q Consensus       262 Ip~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la  293 (294)
                      ||+|+.+.++-..|.|+.. |  .+.+++++++
T Consensus       217 iP~d~~v~~~dl~G~pl~~~~--~v~~~i~~I~  247 (255)
T COG3640         217 IPYDPEVVEADLKGEPLNEEP--EVLKEIEEIA  247 (255)
T ss_pred             ccCCHHHHhccccCCccccch--hhhHHHHHHH
Confidence            9999999999999999999 7  6777777665

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.94  E-value=8.2e-26  Score=195.36  Aligned_cols=202  Identities=43%  Similarity=0.732  Sum_probs=163.4

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCcceec---
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFLE---  117 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~~---  117 (294)
                      ...++|++.|+|||+||||+|.|||..++  ..|+||+++|+|..+++++.+||.+...    ...+.. +.++...   
T Consensus        55 ~~~~~I~V~S~kgGvGKStva~nLA~alA--~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~-~~~~~~~~~~  131 (265)
T COG0489          55 GVKNVIAVTSGKGGVGKSTVAVNLAAALA--QLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEA-LEPVIQHDGI  131 (265)
T ss_pred             ccceEEEEEeCCCCCcHHHHHHHHHHHHH--hcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCc-cccceecCcc
Confidence            35789999999999999999999999999  9999999999999999999999997532    222222 6665443   


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      .++++++.+.....      +........+.+++..+.|.+ |||||||+||+..+.....+.    ...|.+|+|+++.
T Consensus       132 ~~lsi~~~~~~p~~------~r~~l~s~~~~qll~~~~~~~-~D~vIID~PP~~g~~d~~i~~----~~~~g~viVt~p~  200 (265)
T COG0489         132 KVLSILPLGPVPVI------PRGLLGSKAMLQLLEDVLWGE-YDYVIIDTPPGTGDADATVLQ----RIPDGVVIVTTPG  200 (265)
T ss_pred             ceEEEEecCCCCCC------ChHhhhhHHHHHHHHHHhccC-CCEEEEeCCCCchHHHHHHHh----ccCCeEEEEeCCc
Confidence            56777777652222      234455678999999999776 999999999999876665555    4678999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      ......+.+.++.+++.+.+++|+|.||..+.|+.|.         ....+.+.++++ ++++.+|.++...+
T Consensus       201 ~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~---------~g~~~~~~~~~~-~~~g~~p~~~~~~~  263 (265)
T COG0489         201 KTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG---------EGGGEKYAERYG-PYLGSIPLDPSARE  263 (265)
T ss_pred             cchHHHHHHHHHHHHhcCCceEEEEecCccCcccccC---------CCchhhHHHHhc-cccccCCCChhhhh
Confidence            9999999999999999999999999999998877775         123456666667 88899998876654

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.94  E-value=9.9e-27  Score=212.65  Aligned_cols=225  Identities=16%  Similarity=0.149  Sum_probs=154.3

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----------ccc---ccCCC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQ---SASGW  111 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~---~~~~~  111 (294)
                      ..+++|+|.|.||||||||+|.|||.+|+  ..|+||++||+|+++ +++.+||..+..          ...   ....+
T Consensus       102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La--~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (387)
T TIGR03453       102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLA--LRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPL  178 (387)
T ss_pred             CCceEEEEEccCCCcCHHHHHHHHHHHHH--hcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCH
Confidence            34689999999999999999999999999  899999999999974 788888875431          000   01122


Q ss_pred             Ccce---eccCeEEEecccccCCCCccee--e-c----CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347        112 SPVF---LEENLSVMSIGFLLNSPDDAVI--W-R----GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY  181 (294)
Q Consensus       112 ~~~~---~~~~l~~~~~~~~~~~~~~~~~--~-~----~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~  181 (294)
                      .++.   ..++++++|++..+...+....  . .    .......+.+.++.+.  +.||+||||+||+++....   ++
T Consensus       179 ~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~IiiD~pp~~~~~~~---~a  253 (387)
T TIGR03453       179 SEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE--DDYDVVVIDCPPQLGFLTL---SA  253 (387)
T ss_pred             HhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH--hcCCEEEEeCCccHhHHHH---HH
Confidence            2222   2378999998754322111100  0 0    0011235778888876  4499999999999975433   33


Q ss_pred             hhcCCCcEEEEecCCchhhHHHHHHHHHHH-------Hhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHH
Q psy11347        182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFC-------RKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKM  250 (294)
Q Consensus       182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l-------~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~  250 (294)
                      +  ..+|.+|+|+.++..++..+..+++.+       +..    +....++|+|+++.       +....   .+..+.+
T Consensus       254 l--~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-------~~~~~---~~~~~~l  321 (387)
T TIGR03453       254 L--CAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP-------NDGPQ---AQMVAFL  321 (387)
T ss_pred             H--HHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC-------CCccH---HHHHHHH
Confidence            4  579999999999988888776555433       332    24467899999873       22222   3344555


Q ss_pred             HhhcCCcee-eccCCCchhhhhccCCccccc--CCCHHHHHH
Q psy11347        251 CAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPSACVDAI  289 (294)
Q Consensus       251 ~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~  289 (294)
                      .+.+|..++ ..||.+..+.++...|.||++  |.+..++.+
T Consensus       322 ~~~~~~~vl~~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~  363 (387)
T TIGR03453       322 RSLFGDHVLTNPMLKSTAISDAGLTKQTLYEVERSQFTRSTY  363 (387)
T ss_pred             HHHhccccccccccccHHHHhhhhcCCCcEEECCCCCCHHHH
Confidence            556677777 589999999999999999999  554333333

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.94  E-value=1.1e-25  Score=188.35  Aligned_cols=221  Identities=23%  Similarity=0.383  Sum_probs=158.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc------------------
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA------------------  108 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~------------------  108 (294)
                      |+.|+|+|||||+||||+|++||..|+   ..++++++|+|...|+++.+|+.+........                  
T Consensus         1 mm~vAV~sGKGGtGKTTva~~la~~l~---~~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C   77 (284)
T COG1149           1 MMQVAVASGKGGTGKTTVAANLAVLLG---DKYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKC   77 (284)
T ss_pred             CcEEEEeecCCCCChhhHHHHHHHHhc---cccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcH
Confidence            467999999999999999999999999   57899999999999999999988765211100                  


Q ss_pred             ---CCCCccee-c-----------------------cCeEEEe--cccccCCCCc---ce----eecCccc-hHHHHHHH
Q psy11347        109 ---SGWSPVFL-E-----------------------ENLSVMS--IGFLLNSPDD---AV----IWRGPKK-NTMIRQFL  151 (294)
Q Consensus       109 ---~~~~~~~~-~-----------------------~~l~~~~--~~~~~~~~~~---~~----~~~~~~~-~~~l~~~l  151 (294)
                         ..+..+.. .                       +.+...+  .|.......+   .+    ...+... ...+..+-
T Consensus        78 ~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~k  157 (284)
T COG1149          78 AEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALK  157 (284)
T ss_pred             HHhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHH
Confidence               01111100 0                       0000000  0000000000   00    0011112 22333333


Q ss_pred             HhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCC
Q psy11347        152 SEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCP  231 (294)
Q Consensus       152 ~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~  231 (294)
                      +..+ +. -|++|||+|||.+++.++.+     ..+|.+|+||.|++.+++++.+.++..+..+++ .++|+||+...  
T Consensus       158 k~a~-E~-~~~~IIDsaaG~gCpVi~sl-----~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g--  227 (284)
T COG1149         158 KHAK-EL-ADLLIIDSAAGTGCPVIASL-----KGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLG--  227 (284)
T ss_pred             Hhhh-hh-cceeEEecCCCCCChHHHhh-----ccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCC--
Confidence            3333 22 59999999999999988877     799999999999999999999999999999999 68999997421  


Q ss_pred             CCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcccccCCCHHHHHHHHh
Q psy11347        232 KCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQI  292 (294)
Q Consensus       232 ~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~~~s~~~~~~~~l  292 (294)
                                  ...++++.++.|+++++.||++..+.++..+|.|+.++.++.+..+...
T Consensus       228 ------------~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~~~~k~~~~~~~~  276 (284)
T COG1149         228 ------------DSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVEPDSKEAEAILEE  276 (284)
T ss_pred             ------------chHHHHHHHHcCCCeeEECCcchhHHHHHhCCCccccccchHHHHHHHH
Confidence                        1158899999999999999999999999999999999777777766554

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.94  E-value=7.3e-26  Score=190.62  Aligned_cols=197  Identities=16%  Similarity=0.118  Sum_probs=133.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-c---cc-----ccCCCCcce--e
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-V---HQ-----SASGWSPVF--L  116 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~---~~-----~~~~~~~~~--~  116 (294)
                      ++|+|. +||||||||++.|||.+|+  +.|+||++||+|++.+....+++.+... +   ..     ....+.++.  .
T Consensus         1 ~~iav~-gKGGvGKTt~~~nLA~~la--~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (212)
T cd02117           1 RQIAIY-GKGGIGKSTTSQNLSAALA--EMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEG   77 (212)
T ss_pred             CEEEEE-CCCcCcHHHHHHHHHHHHH--HCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeC
Confidence            367888 5999999999999999999  8999999999999987666555543321 1   11     111122222  2


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      .+|++++|++........... ........++ .+..+.  ++|||||||+++......  ....+....+|.+++|+++
T Consensus        78 ~~~l~vlp~~~~~~~~~~~~~-~~~~~~~~l~-~l~~~~--~~yD~ilID~~g~~~~~~--~~~~l~~~~ad~vliv~~p  151 (212)
T cd02117          78 FGGVKCVESGGPEPGVGCAGR-GVITAVNLLE-KEGFAE--DDLDVVLYDVLGDVVCGG--FAMPIREGKADEIYIVTSG  151 (212)
T ss_pred             CCCcEEEeCCCCCCCcccCCc-chhhHHHHHH-hccccc--cCCCEEEEecCCCceecc--cccccccccCcEEEEEecc
Confidence            379999999876654432110 0000111232 444444  449999999976553111  1111101379999999999


Q ss_pred             chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC
Q psy11347        197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID  265 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~  265 (294)
                      +..+++++.++++.++..    +.+..++|+||++.       +     ...+..+++.+.++.++++.||++
T Consensus       152 ~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~-------~-----~~~~~~~~~~~~~~~~vl~~IP~d  212 (212)
T cd02117         152 EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT-------D-----RETELIDAFAERLGTQVIHFVPRD  212 (212)
T ss_pred             cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC-------c-----cHHHHHHHHHHHcCCCEEEecCCC
Confidence            999999999888888754    55678999999862       1     123467888888999999999986

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.94  E-value=3.2e-25  Score=195.98  Aligned_cols=221  Identities=19%  Similarity=0.271  Sum_probs=153.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-ccccc--CCC-------Cc-
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQSA--SGW-------SP-  113 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~~--~~~-------~~-  113 (294)
                      +..++|+|+ +|||+||||++.|||.+|+  ..|+||+++|+|++++++..+||..... +....  ..+       .+ 
T Consensus        29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la--~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv  105 (329)
T cd02033          29 KKTQIIAIY-GKGGIGKSFTLANLSYMMA--QQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDV  105 (329)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeece
Confidence            446788887 6999999999999999999  8999999999999999999999865432 11110  000       11 


Q ss_pred             ceeccCeEEEecccccCCCCcceeecCccch--HHHHHHHHhh---ccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347        114 VFLEENLSVMSIGFLLNSPDDAVIWRGPKKN--TMIRQFLSEV---DWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI  188 (294)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l---~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad  188 (294)
                      .....++.++..+       ....+.+....  ....++++.+   .| + |||||+|++++..+..+......  ..+|
T Consensus       106 ~~~~~gv~~~~~g-------~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~-~DyVliD~~gdv~~ggf~l~i~~--~~ad  174 (329)
T cd02033         106 CFKRDGVFAMELG-------GPEVGRGCGGRGIIHGFELLEKLGFHDW-D-FDYVLLDFLGDVVCGGFGLPIAR--DMAQ  174 (329)
T ss_pred             EEEeCCEEEecCC-------CCeecccccchHHHHHHHHHHHccCccc-c-CCEEEEecCCcceeccccchhhh--cCCc
Confidence            1112344444322       11112222211  1222456654   44 3 99999999876642111111111  3588


Q ss_pred             EEEEecCCchhhHHHH---HHHHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        189 GAIVVTTPQEVSLLDV---RKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       189 ~vliv~~~~~~s~~~~---~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      .+++|++++..++..+   .+.+..+++.+  .+.+++|+||++.               ...++++.+.+++++++.||
T Consensus       175 ~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~---------------~~~ie~~ae~lgi~vLg~IP  239 (329)
T cd02033         175 KVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG---------------TGEAQAFAAHAGIPILAAIP  239 (329)
T ss_pred             eEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC---------------cchHHHHHHHhCCCEEEECC
Confidence            9999999999999765   45556666664  5689999999752               12478888999999999999


Q ss_pred             CCchhhhhccCCcccccCCCHHHHHHHHhhC
Q psy11347        264 IDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ  294 (294)
Q Consensus       264 ~~~~~~~a~~~g~~v~~~~s~~~~~~~~la~  294 (294)
                      +++.+.++..+|+++..|.+++++.|++||+
T Consensus       240 ~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~  270 (329)
T cd02033         240 ADEELRRKSAAYQIVGRPGTTWGPLFEQLAT  270 (329)
T ss_pred             CCHHHHHHHHcCCeecCCCCHHHHHHHHHHH
Confidence            9999999999999654499999999999874

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.94  E-value=1.6e-26  Score=210.07  Aligned_cols=217  Identities=15%  Similarity=0.120  Sum_probs=151.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec-CCCCCChhhhccccccc-------cc----cccCCCC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQ-------VH----QSASGWS  112 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~-D~~~~~l~~~lg~~~~~-------~~----~~~~~~~  112 (294)
                      .++++|+|.+.||||||||+|.|||..|+  ..|+||++||+ |+|+ ++..+||..+..       +.    .......
T Consensus       104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA--~~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~  180 (388)
T PRK13705        104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLA--LKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDAT  180 (388)
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHHHHHH--hcCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchh
Confidence            45799999999999999999999999999  89999999996 9986 556677764321       00    0001111


Q ss_pred             cce---eccCeEEEecccccCCCCcceeec------CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhh
Q psy11347        113 PVF---LEENLSVMSIGFLLNSPDDAVIWR------GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK  183 (294)
Q Consensus       113 ~~~---~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~  183 (294)
                      ...   ..+|++++|++..+...+..+...      .......+++.++.+.  ++|||||||+||+++...   .+++ 
T Consensus       181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~--~~YD~IiIDtpP~l~~~t---~nal-  254 (388)
T PRK13705        181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA--HDYDVIVIDSAPNLGIGT---INVV-  254 (388)
T ss_pred             hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh--ccCCEEEEECCCchhHHH---HHHH-
Confidence            111   237999999875543222111000      0112346778888876  449999999999998543   3444 


Q ss_pred             cCCCcEEEEecCCchhhHHHHHHHHHHHHhc-------C-CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcC
Q psy11347        184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV-------N-IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELS  255 (294)
Q Consensus       184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~-------~-~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g  255 (294)
                       ..||.||+|+.++..++.++..+++.+...       + .+.+.+++|+++.+       ....  .....+.+.+.+|
T Consensus       255 -~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~-------~~~~--~~~~~~~l~~~~~  324 (388)
T PRK13705        255 -CAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS-------NGSQ--SPWMEEQIRDAWG  324 (388)
T ss_pred             -HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC-------CchH--HHHHHHHHHHHhc
Confidence             579999999999999999988887777532       1 13356899998731       1111  1113355666677


Q ss_pred             Ccee-eccCCCchhhhhccCCccccc
Q psy11347        256 VPFL-GSVPIDPLVTRHCDEGTSAID  280 (294)
Q Consensus       256 ~~~l-~~Ip~~~~~~~a~~~g~~v~~  280 (294)
                      -.++ ..||.+..+.++...++++++
T Consensus       325 ~~vl~~~I~~s~~i~~a~~~~~ti~e  350 (388)
T PRK13705        325 SMVLKNVVRETDEVGKGQIRMRTVFE  350 (388)
T ss_pred             cccccccCcccchHhhhhhcCCCcee
Confidence            6677 589999999999999999999

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.94  E-value=5.1e-26  Score=206.48  Aligned_cols=216  Identities=14%  Similarity=0.119  Sum_probs=150.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec-CCCCCChhhhcccccccc----------ccc-cCCCCc
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQV----------HQS-ASGWSP  113 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~-D~~~~~l~~~lg~~~~~~----------~~~-~~~~~~  113 (294)
                      .+++|+|.+.||||||||+|.|||.+|+  ..|+||++||+ |+|+ ++..+||..+...          ... ...+..
T Consensus       105 ~~~vIav~n~KGGVGKTTta~nLA~~LA--~~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~  181 (387)
T PHA02519        105 NPVVLAVMSHKGGVYKTSSAVHTAQWLA--LQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEY  181 (387)
T ss_pred             CceEEEEecCCCCCcHHHHHHHHHHHHH--hCCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHh
Confidence            4689999999999999999999999999  89999999996 9986 5666777654210          000 001111


Q ss_pred             ce---eccCeEEEecccccCCCCcceeec---C---ccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhc
Q psy11347        114 VF---LEENLSVMSIGFLLNSPDDAVIWR---G---PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKG  184 (294)
Q Consensus       114 ~~---~~~~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~  184 (294)
                      ..   ..++++++|++..+...+..+...   .   ......+++.++.+.  ++|||||||+||.++..   +.+++  
T Consensus       182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~--~~YD~IlID~pPslg~l---t~nAL--  254 (387)
T PHA02519        182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW--DNYDIIVIDSAPNLGTG---TINVV--  254 (387)
T ss_pred             heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh--ccCCEEEEECCCCccHH---HHHHH--
Confidence            11   237999999875543222111000   0   112346778888876  45999999999999853   44444  


Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHHHHh-------cC-CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347        185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRK-------VN-IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV  256 (294)
Q Consensus       185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~-------~~-~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~  256 (294)
                      ..||.||+|+.++..++.++..+++.+..       .+ .+.+.+++|+++.+      .....   ....+.+.+.+|-
T Consensus       255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~------~~~~~---~~i~~~l~~~~g~  325 (387)
T PHA02519        255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT------VGNQS---RWMEEQIRNTWGS  325 (387)
T ss_pred             HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC------CchHH---HHHHHHHHHHhcc
Confidence            57899999999999999988777666632       12 22456899998732      01111   2234566677787


Q ss_pred             cee-eccCCCchhhhhccCCccccc
Q psy11347        257 PFL-GSVPIDPLVTRHCDEGTSAID  280 (294)
Q Consensus       257 ~~l-~~Ip~~~~~~~a~~~g~~v~~  280 (294)
                      .++ ..||....+.+|...++++++
T Consensus       326 ~vl~~~I~~s~~i~~a~~~~~ti~e  350 (387)
T PHA02519        326 MVLRQVVRVTDEVGKGQIKMRTVFE  350 (387)
T ss_pred             ccccccCcCcchHhhchhcCCChhh
Confidence            777 689999999999999999999

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.93  E-value=7.9e-25  Score=192.58  Aligned_cols=221  Identities=19%  Similarity=0.195  Sum_probs=137.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccccC---------CCCcceec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSAS---------GWSPVFLE  117 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~~---------~~~~~~~~  117 (294)
                      ++|+|+ +|||+||||+|.|||.+|+  ..|+||++||+|++.+++..++|.... .+.....         .+.++...
T Consensus         1 ~vIav~-gKGGvGKTT~a~nLA~~La--~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~   77 (296)
T TIGR02016         1 RIIAIY-GKGGSGKSFTTTNLSHMMA--EMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFK   77 (296)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheee
Confidence            478888 8999999999999999999  899999999999999888877763321 1111110         11111111


Q ss_pred             cCeEEEecccccCCCCcceeecCc--------cchHHHHHHHHhhcc-CCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGP--------KKNTMIRQFLSEVDW-GNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI  188 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~l~~-~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad  188 (294)
                      ..   ++.+...  .. ......+        .........++.+.. .++|||||||+++...+.-......+  ..+|
T Consensus        78 ~~---~~~~~~~--~~-~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~~~~a~--~~Ad  149 (296)
T TIGR02016        78 TT---IMNGSGG--VY-GMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFATPLAR--SLAE  149 (296)
T ss_pred             cc---ccCcCCC--cc-eeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccccchhh--hhCC
Confidence            00   1101000  00 0001110        011122355555431 12499999999764411000011111  3689


Q ss_pred             EEEEecCCchhhHHHHHHHHHHH---HhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        189 GAIVVTTPQEVSLLDVRKEIDFC---RKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       189 ~vliv~~~~~~s~~~~~~~l~~l---~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      .+++|+.++..++..+.++.+.+   ++.+  ++..++|+||++.               ....+++.+.+++++++.||
T Consensus       150 ~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~---------------~~~~~~~~~~~~i~vLg~IP  214 (296)
T TIGR02016       150 EVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG---------------SGEAQAFAREVGIPVLAAIP  214 (296)
T ss_pred             eEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC---------------ccHHHHHHHHcCCCeEEECC
Confidence            99999999999998776666644   4543  6689999999751               12457888899999999999


Q ss_pred             CCchhhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347        264 IDPLVTRHCDEGTSAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       264 ~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la~  294 (294)
                      ++..+.++....-.+.. +.+...+.|.+|++
T Consensus       215 ~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~  246 (296)
T TIGR02016       215 ADEELRRKSLAYQIVGSHATPRFGKLFEELAG  246 (296)
T ss_pred             CCHHHHHHhcCCCeeecCCCHHHHHHHHHHHH
Confidence            99999884433223333 56668888888874

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.92  E-value=3.3e-24  Score=175.85  Aligned_cols=179  Identities=30%  Similarity=0.464  Sum_probs=123.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      +|+|+|+|||+||||+|.|||..|      +||+++|+|++.++++.+||.+.......... ......+.....+.+..
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l------~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   73 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL------KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVG-GKKAVIDPELCISCGLC   73 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH------hCcEEEECCCCCCchhhhcCCCccccccceec-CCceEEchhhhccccch
Confidence            489999999999999999999998      58999999999999999999876432110000 00000011111111100


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                                  ......+.+.+..+...++|||||+|+||+........+     ..+|.+++|+.++..++..+.+++
T Consensus        74 ------------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l-----~~aD~vliv~~~~~~~~~~~~~~~  136 (179)
T cd03110          74 ------------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASL-----TGADAALLVTEPTPSGLHDLERAV  136 (179)
T ss_pred             ------------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHH-----HcCCEEEEEecCCcccHHHHHHHH
Confidence                        011122333332222123499999999999876544333     579999999999999999999999


Q ss_pred             HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      +.+++.+.+ .++|+|+++.       +..    ....++++++.+|+++++.||
T Consensus       137 ~~l~~~~~~-~~vV~N~~~~-------~~~----~~~~~~~~~~~~~~~vl~~ip  179 (179)
T cd03110         137 ELVRHFGIP-VGVVINKYDL-------NDE----IAEEIEDYCEEEGIPILGKIP  179 (179)
T ss_pred             HHHHHcCCC-EEEEEeCCCC-------Ccc----hHHHHHHHHHHcCCCeEEeCC
Confidence            999988877 5899999873       111    233567788889999999987

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.91  E-value=8.2e-24  Score=177.14  Aligned_cols=168  Identities=23%  Similarity=0.297  Sum_probs=127.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-----ccccccCCCCcce---ecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-----QVHQSASGWSPVF---LEE  118 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-----~~~~~~~~~~~~~---~~~  118 (294)
                      +++|+|+|.|||+||||++.+||..|+  ..|+||++||+|++.+.+...++....     .+......+.+..   ..+
T Consensus        17 ~kvI~v~s~kgG~GKTt~a~~LA~~la--~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~   94 (204)
T TIGR01007        17 IKVLLITSVKPGEGKSTTSANIAVAFA--QAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIE   94 (204)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCC
Confidence            899999999999999999999999999  899999999999999888888876542     1111222222222   127


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|.+.........+      ....+.++++.++  ++||+||||+||.........+.    ..+|.+|+|+.++.
T Consensus        95 ~l~~l~~g~~~~~~~~~l------~~~~l~~~l~~l~--~~yD~ViiD~pp~~~~~~~~~~~----~~~D~vilV~~~~~  162 (204)
T TIGR01007        95 NLFVITSGPVPPNPTELL------QSSNFKTLIETLR--KYFDYIIIDTPPIGTVTDAAIIA----RACDASILVTDAGE  162 (204)
T ss_pred             CEEEEeCCCCCCCHHHHh------CcHHHHHHHHHHH--hcCCEEEEeCCCccccchHHHHH----HhCCeEEEEEECCC
Confidence            999999876543322111      1236778888886  34999999999843211111111    46899999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .+.+.+.+.++.+++.+.+.+|+|+|+++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~  192 (204)
T TIGR01007       163 IKKRDVQKAKEQLEQTGSNFLGVVLNKVDI  192 (204)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEEEeCccc
Confidence            999999999999999999999999999874

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.91  E-value=6.1e-23  Score=174.24  Aligned_cols=187  Identities=16%  Similarity=0.229  Sum_probs=128.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      |++|+|.+.||||||||++.|||.+|+  ..|++|+++|+|+|+ ++..+++....     ...|...     ... .  
T Consensus         1 M~iI~v~n~KGGvGKTT~a~nLA~~la--~~G~~VlliD~DpQ~-s~~~w~~~~~~-----~~~~~~~-----~~~-~--   64 (231)
T PRK13849          1 MKLLTFCSFKGGAGKTTALMGLCAALA--SDGKRVALFEADENR-PLTRWKENALR-----SNTWDPA-----CEV-Y--   64 (231)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHHHHH--hCCCcEEEEeCCCCC-CHHHHHHhhcc-----ccCCCcc-----cee-c--
Confidence            579999999999999999999999999  899999999999986 44444432211     0001100     000 0  


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~  206 (294)
                                   .......+...++.+..++ |||||||+||+.+......+     ..+|.||+|+.++..++..+.+
T Consensus        65 -------------~~~~~~~l~~~l~~~~~~~-yD~iiID~pp~~~~~~~~al-----~~aD~vliP~~ps~~d~~~~~~  125 (231)
T PRK13849         65 -------------AADELPLLEAAYEDAELQG-FDYALADTHGGSSELNNTII-----ASSNLLLIPTMLTPLDIDEALS  125 (231)
T ss_pred             -------------CCCHHHHHHHHHHHHhhCC-CCEEEEeCCCCccHHHHHHH-----HHCCEEEEeccCcHHHHHHHHH
Confidence                         0001124566666664334 99999999998885544333     4799999999999999998888


Q ss_pred             HHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCcccc
Q psy11347        207 EIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAI  279 (294)
Q Consensus       207 ~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~  279 (294)
                      +++.+.+.      +++ ..+++||++.      .+...   ..+...++.+  +++++ ..|+.+..+.++...|.+..
T Consensus       126 ~~~~v~~~~~~~~~~l~-~~iv~~~~~~------~~~~~---~~~~~~~~~~--~~~vl~t~I~~r~~~~~a~~~G~~~~  193 (231)
T PRK13849        126 TYRYVIELLLSENLAIP-TAILRQRVPV------GRLTT---SQRAMSDMLE--SLPVVDSPMHERDAFAAMKERGMLHL  193 (231)
T ss_pred             HHHHHHHHHHHhCCCCC-eEEEEEeccc------ccCCH---HHHHHHHHHh--cCCCCCccccchHHHHHHHhcCCccc
Confidence            87776432      344 4699999852      11111   1223444444  45666 58999999999999999776


Q ss_pred             c
Q psy11347        280 D  280 (294)
Q Consensus       280 ~  280 (294)
                      .
T Consensus       194 ~  194 (231)
T PRK13849        194 T  194 (231)
T ss_pred             c
Confidence            4

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.90  E-value=2.1e-23  Score=174.91  Aligned_cols=164  Identities=23%  Similarity=0.249  Sum_probs=124.5

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCCChhhhcccccccc----ccccC-CCCcce---
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICGPSMPRMMGLLNEQV----HQSAS-GWSPVF---  115 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~~~l~~~lg~~~~~~----~~~~~-~~~~~~---  115 (294)
                      ..+++|+|+|+|||+||||++.|||.+|+  . .|+||++||+|++.++++..++.+...-    ..... .+.+..   
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la--~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~  110 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAINLAISLA--QEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPT  110 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHH--HhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccC
Confidence            35889999999999999999999999999  6 5999999999999988888888765421    11111 233322   


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCc--cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL--EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV  193 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~y--d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv  193 (294)
                      ..++++++|.+.........      .....+.++++.++  +.|  ||||||+||.........+.    ..+|.+|+|
T Consensus       111 ~~~~l~vl~~g~~~~~~~~~------~~~~~l~~~l~~l~--~~y~~D~IiiD~pp~~~~~~~~~l~----~~aD~viiV  178 (207)
T TIGR03018       111 NIGRLSLLPAGRRHPNPTEL------LASQRMRSLLHELA--RRYPDRIIIIDTPPLLVFSEARALA----RLVGQIVLV  178 (207)
T ss_pred             CCCCEEEEeCCCCCCCHHHH------hCcHHHHHHHHHHH--hhCCCCEEEEECCCCcchhHHHHHH----HhCCEEEEE
Confidence            23789999987654332111      12346788888887  337  99999999988643222221    369999999


Q ss_pred             cCCchhhHHHHHHHHHHHHhcCCCeeEEEec
Q psy11347        194 TTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN  224 (294)
Q Consensus       194 ~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN  224 (294)
                      +.++..+...+.+.++.++  +.+.+|+|+|
T Consensus       179 ~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N  207 (207)
T TIGR03018       179 VEEGRTTQEAVKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             EECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence            9999999999999999998  6788999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.90  E-value=4e-23  Score=180.70  Aligned_cols=177  Identities=21%  Similarity=0.332  Sum_probs=133.6

Q ss_pred             ChHHHHhhh-----ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347         35 GIELVKSHL-----SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH  105 (294)
Q Consensus        35 ~~~~i~~~~-----~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~  105 (294)
                      ..+.|+..+     ....++|+|+|+|||+||||++.|||..++  ..|+||++||+|+..+.++.+|+.+...    ..
T Consensus        86 ~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la--~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l  163 (274)
T TIGR03029        86 ALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFS--QLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDIL  163 (274)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHh
Confidence            345555555     235799999999999999999999999999  8999999999999999888888875542    11


Q ss_pred             cccCCCCcc---eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        106 QSASGWSPV---FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       106 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      .+....+.+   ...++++++|.+....+..+.+      ....+..+++.++  +.|||||||+||.........+.  
T Consensus       164 ~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~~~------~~~~~~~~l~~l~--~~yD~ViiD~pp~~~~~d~~~~~--  233 (274)
T TIGR03029       164 AGRSDLEVITHIPALENLSVLPAGAIPPNPQELL------ARPAFTDLLNKVM--GDYDVVIVDTPSAEHSSDAQIVA--  233 (274)
T ss_pred             CCCCCHHHeeecCCCCCEEEEeCcCCCCCHHHHh------CcHHHHHHHHHHH--hcCCEEEEeCCCcccccHHHHHH--
Confidence            111111111   1237899999987654332222      1236788888886  44999999999976422112221  


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM  225 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~  225 (294)
                        ..+|.+|+|+.++..+...+.+.++.+++.+.+.+|+|+|+
T Consensus       234 --~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       234 --TRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             --HhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence              46899999999999999999999999999999999999996

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.89  E-value=2.1e-23  Score=173.04  Aligned_cols=188  Identities=28%  Similarity=0.426  Sum_probs=124.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL  129 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (294)
                      |+|+|+|||+||||+|.+||.+|+  .+|++|+++|+|++.+++..+++... ......   ....   ..   +     
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la--~~g~~VlliD~D~~~~~~~~~~~~~~-~~~~~~---~~~~---~~---~-----   63 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALA--RKGKKVLLIDLDPQAPNLSILFGVYD-ILREGL---ENAN---AI---L-----   63 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEESTTSHHHHHHTTCHH-HHTTSS---HGHH---CH---H-----
T ss_pred             CEEEcCCCCccHHHHHHHHHhccc--cccccccccccCcccccHHHHhcchh-hccccc---eehh---hh---h-----
Confidence            789999999999999999999999  79999999999999877766665510 000000   0000   00   0     


Q ss_pred             CCCCcceeec---CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347        130 NSPDDAVIWR---GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       130 ~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~  206 (294)
                      ...+......   . .....++++++.+.... ||+||||+|++........+     ..+|.+|+|+.++..+++.+.+
T Consensus        64 ~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~-yD~iiiD~~~~~~~~~~~~l-----~~ad~viv~~~~~~~~i~~~~~  136 (195)
T PF01656_consen   64 KNFESQDIYQGEEY-LDPELLREILESLIKSD-YDYIIIDTPPGLSDPVRNAL-----AAADYVIVPIEPDPSSIEGAER  136 (195)
T ss_dssp             ESCCHHHHHHHCHC-HHHHHHHHHHHHHHHTT-SSEEEEEECSSSSHHHHHHH-----HTSSEEEEEEESSHHHHHHHHH
T ss_pred             hccchhhhhhhhhh-hHHHHHHHHHHHhhhcc-ccceeecccccccHHHHHHH-----HhCceeeeecCCcHHHHHHHHH
Confidence            0000000000   0 23346888888866444 99999999999987644444     4799999999999999999999


Q ss_pred             HHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCc-ee-eccCCCchhhh
Q psy11347        207 EIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVP-FL-GSVPIDPLVTR  270 (294)
Q Consensus       207 ~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~-~l-~~Ip~~~~~~~  270 (294)
                      +++.++..+  .+..++|+||++..      .....   .....+.....+.+ ++ +.||++.+++|
T Consensus       137 ~~~~l~~~~~~~~~~~vv~N~v~~~------~~~~~---~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~  195 (195)
T PF01656_consen  137 LIELLKRLGKKLKIIGVVINRVDPG------NESKL---QEEIEEIERELYVPVVLPGVIPYSEAVSE  195 (195)
T ss_dssp             HHHHHHHHTHTEEEEEEEEEEETSC------CHHHH---HHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred             HHHHHHHhccccceEEEEEeeeCCC------ccchH---HHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence            999999887  55889999999631      11111   11223333333322 44 68999988764

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.89  E-value=2.1e-22  Score=169.32  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=154.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccc---cCC-----CCcce--e
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQS---ASG-----WSPVF--L  116 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~---~~~-----~~~~~--~  116 (294)
                      +.|+|. ||||+||||++.||+.+|+  ..|+||+.|.|||...+...+++-... .+...   ...     ++++.  -
T Consensus         1 r~IAiY-GKGGIGKST~~~Nlsaala--~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G   77 (273)
T PF00142_consen    1 RKIAIY-GKGGIGKSTTASNLSAALA--EMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEG   77 (273)
T ss_dssp             EEEEEE-ESTTSSHHHHHHHHHHHHH--HTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEE
T ss_pred             CeEEEE-cCCCcccChhhhHHHHHHH--hccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEec
Confidence            346666 9999999999999999999  899999999999988776666664433 22111   111     12222  2


Q ss_pred             ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccC-CCccEEEEcCCCCCChH-HHHHHHHhhcCCCcEEEEec
Q psy11347        117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-NGLEYLLIDTPPGTSDE-HLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~yd~IiiD~p~~~~~~-~~~~~~~l~~~~ad~vliv~  194 (294)
                      ..++..+.+|..-++...     .....-...++++++..- ++||+|+.|.-+..-+. +..-   +.+..++.+.+|+
T Consensus        78 ~~gi~CvEsGGPePGvGC-----aGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP---ir~g~a~evyIVt  149 (273)
T PF00142_consen   78 FKGILCVESGGPEPGVGC-----AGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP---IREGYAQEVYIVT  149 (273)
T ss_dssp             GGGEEEEE---SCTTSSB-----HHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH---HHTTS-SEEEEEE
T ss_pred             cCCceeeccCCCcccccc-----cccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh---hhhccCCEEEEEe
Confidence            378888887743332221     122223455677766532 34899999998655221 1111   2225899999999


Q ss_pred             CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      ..+..++-.++.+.+.+++.    +.++.|+|.|+-.            .....+.++++.++.|.++++.||++..+.+
T Consensus       150 Sge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~------------~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~  217 (273)
T PF00142_consen  150 SGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN------------VDDEEEIVEDFAERIGTPIIAFIPRSEIVQR  217 (273)
T ss_dssp             BSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS------------STTHHHHHHHHHHHHTSEEEEEE---HHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC------------CCCchHHHHHHHHHcCCcEEEecCchHHHHH
Confidence            99999999999999888755    3578999999632            1223567899999999999999999999999


Q ss_pred             hccCCccccc--CCCHHHHHHHHhhC
Q psy11347        271 HCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      +-..+++|++  |+|+.+..|++||+
T Consensus       218 ae~~~~TVie~~P~s~~a~~yr~LA~  243 (273)
T PF00142_consen  218 AELYGKTVIEAAPDSEQAQEYRELAR  243 (273)
T ss_dssp             HHHCTS-CCCC-TTSHHHHHHHHHHH
T ss_pred             HHHcCCEEEEeCCCcHHHHHHHHHHH
Confidence            9999999999  99999999999984

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.89  E-value=7.2e-22  Score=173.41  Aligned_cols=221  Identities=20%  Similarity=0.265  Sum_probs=177.2

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCcce-----
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVF-----  115 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~-----  115 (294)
                      +..+.++|++.|||+|-||+|.|+|+.++ ...+..|+++|+|.+.++-..+|+.++..    .......+++..     
T Consensus       102 ~~~r~iafl~akgg~g~stlA~n~a~~l~-~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~  180 (366)
T COG4963         102 QQGRELAFLGAKGGVGTSTLAHNLAKGLA-ILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLL  180 (366)
T ss_pred             hhceEEEEEeecCCcchHHHHHHHHHHHh-hhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHH
Confidence            34799999999999999999999999999 56789999999999998888888888762    223333444422     


Q ss_pred             --eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347        116 --LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV  193 (294)
Q Consensus       116 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv  193 (294)
                        ..+++.+++....+....+       .....+..+++.+.  ..||+||+|.|..+.+|+...+     ..+|.|+++
T Consensus       181 ~~~~~~l~ll~a~~~~~~~~d-------~~~~~~~~Ll~~~~--~~~~~vV~Dlp~~~~~~t~~vL-----~~Sd~iviv  246 (366)
T COG4963         181 TRLASGLKLLAAPTELAKNYD-------LKTGAVERLLDLLR--GSFDFVVVDLPNIWTDWTRQVL-----SGSDEIVIV  246 (366)
T ss_pred             hccCCCceeecCCcchhhhcc-------cccchHHHHHHHhh--ccCCeEEEcCCCccchHHHHHH-----hcCCeEEEE
Confidence              2377777776544433322       23336677777776  3499999999988888887777     689999999


Q ss_pred             cCCchhhHHHHHHHHHHHHhcCC--CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh-hh
Q psy11347        194 TTPQEVSLLDVRKEIDFCRKVNI--PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV-TR  270 (294)
Q Consensus       194 ~~~~~~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~-~~  270 (294)
                      ++++..+++.++++++.+++.+.  +...+|+|++...     .       ..+ .+++.+.+|++.+..+|.|..+ ..
T Consensus       247 ~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~-----~-------~~~-~~dl~~~~~i~~~~~~p~d~~~~~~  313 (366)
T COG4963         247 AEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVP-----K-------RPE-PSDLEEILGIESLLVLPFDPALFGD  313 (366)
T ss_pred             ecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC-----C-------CCC-HHHHHHHhCCchhccccCCchhhhh
Confidence            99999999999999999997754  4789999998731     1       111 6788889999999999999777 79


Q ss_pred             hccCCccccc--CCCHHHHHHHHhh
Q psy11347        271 HCDEGTSAID--TPSACVDAIQQIV  293 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~~~~la  293 (294)
                      |.++|+++.+  |.+++++++.+++
T Consensus       314 A~n~g~~l~E~~~~~~~~k~l~~la  338 (366)
T COG4963         314 AANNGRMLSEVDPGSPAAKALAQLA  338 (366)
T ss_pred             hhccCccccccCCCChHHHHHHHHH
Confidence            9999999999  9999999999886

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.2e-21  Score=157.49  Aligned_cols=226  Identities=17%  Similarity=0.169  Sum_probs=166.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcc-cccccccccc-------CCC-Ccce--
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG-LLNEQVHQSA-------SGW-SPVF--  115 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg-~~~~~~~~~~-------~~~-~~~~--  115 (294)
                      ++.|+|. ||||+||||++.|+|.+|+  +.|+||+++.|||..-+...++| .....+....       ..+ +++.  
T Consensus         1 mr~iAiY-GKGGIGKSTts~N~aAAla--~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~   77 (278)
T COG1348           1 MRQIAIY-GKGGIGKSTTSQNLAAALA--ELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFT   77 (278)
T ss_pred             CceEEEe-cCCCcCcchhHHHHHHHHH--HcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheec
Confidence            4567776 9999999999999999999  89999999999998877777777 4444322211       111 1222  


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhcc-CCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW-GNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ...++..+.+|..-++...     .....-...++|+++.. .++.|+|++|..+..-+.-.+  --+.+..||.+.+|+
T Consensus        78 Gf~Gv~CVEsGGPepGvGC-----AGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFA--mPiReg~AdeiyIVt  150 (278)
T COG1348          78 GFGGVKCVESGGPEPGVGC-----AGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFA--MPIREGYADEIYIVT  150 (278)
T ss_pred             cCCceEEeecCCCCCCCCc-----ccchHHHHHHHHHHhCCccccCCEEEEeccCceeeccee--eehhcccCcEEEEEe
Confidence            2367888877744333322     22222244577777742 243599999999765321111  112225899999999


Q ss_pred             CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      ..+.+++-+++.+.+-+++.    +.++-|+|.|.-.            ..+..+.++++.+++|.+++..||+++.+..
T Consensus       151 Sge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~------------~~~e~e~v~~fa~~igt~li~~vPr~~ivq~  218 (278)
T COG1348         151 SGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS------------VDRERELVEAFAERLGTQLIHFVPRDNIVQK  218 (278)
T ss_pred             cCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC------------cccHHHHHHHHHHHhCCceEeeccchHHHHH
Confidence            99999999999888888643    5778999998832            1223567899999999999999999999999


Q ss_pred             hccCCccccc--CCCHHHHHHHHhhC
Q psy11347        271 HCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      |-.+|++|++  |+|..+..|++||+
T Consensus       219 aE~~~kTvie~~P~s~~a~~yr~LA~  244 (278)
T COG1348         219 AELNGKTVIEYAPDSNQAEEYRELAK  244 (278)
T ss_pred             HHHcCcchhhhCcchhHHHHHHHHHH
Confidence            9999999999  99999999999984

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.86  E-value=4e-21  Score=189.80  Aligned_cols=181  Identities=12%  Similarity=0.083  Sum_probs=136.6

Q ss_pred             cChHHHHhhh-----ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----c
Q psy11347         34 PGIELVKSHL-----SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----V  104 (294)
Q Consensus        34 ~~~~~i~~~~-----~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~  104 (294)
                      -..+.|+..+     ....++|+|+|.|||+||||+|.|||..|+  ..|+||++||+|++.++++..||.....    +
T Consensus       528 Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA--~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~  605 (754)
T TIGR01005       528 EELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIA--SGGKRALLIDADGRKAALSQILVAREVSGLLDL  605 (754)
T ss_pred             HHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHH--hCCCeEEEEeCCCCchhHHHHhCCcccCChHHH
Confidence            3344554444     234689999999999999999999999999  8999999999999998999999876542    1


Q ss_pred             ccccCCCCcce---eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347        105 HQSASGWSPVF---LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY  181 (294)
Q Consensus       105 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~  181 (294)
                      ......+.+..   ..++++++|++....++.+.+      ....+.++++.++  +.||+||||+||.........+. 
T Consensus       606 l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~ll------~~~~~~~~l~~l~--~~yD~IiID~pp~~~~~d~~~l~-  676 (754)
T TIGR01005       606 LAGLRSLLLDLTASGAASLPMLDSGLFPHGITELL------ASPAMFSLVIHAR--LYSDCVVVDVGTADPVRDMRAAA-  676 (754)
T ss_pred             HcCCccHHHHhccCCCCCeeEecCCCCCCCHHHHh------ccHHHHHHHHHHH--hhCCEEEEcCCCcchhHHHHHhh-
Confidence            12222232222   247899999985443332221      1235677888876  44999999999988643322221 


Q ss_pred             hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                         ..+|.+|+|+..+..+...+.+.++.++..+.+..|+|+|+++.
T Consensus       677 ---~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~  720 (754)
T TIGR01005       677 ---RLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP  720 (754)
T ss_pred             ---hhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence               46899999999999999999999999999999999999999874

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK11519 tyrosine kinase; Provisional

Probab=99.85  E-value=1.6e-20  Score=183.86  Aligned_cols=180  Identities=17%  Similarity=0.226  Sum_probs=139.6

Q ss_pred             cChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----c
Q psy11347         34 PGIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----V  104 (294)
Q Consensus        34 ~~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~  104 (294)
                      -..+.||..+.     ...++|+|+|.+||+||||++.|||..++  ..|+||++||+|+..++++.+||.....    +
T Consensus       508 Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la--~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~  585 (719)
T PRK11519        508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVIS--QTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDI  585 (719)
T ss_pred             HHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHH
Confidence            34555555543     24689999999999999999999999999  8999999999999999999999876542    2


Q ss_pred             ccccCCCCcce---eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347        105 HQSASGWSPVF---LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY  181 (294)
Q Consensus       105 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~  181 (294)
                      ......+.+..   ..++++++|+|....++.+.+      ....+.++++.++  +.||+||||+||.........+. 
T Consensus       586 l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~ell------~s~~~~~ll~~l~--~~yD~ViiDtpP~~~v~Da~~l~-  656 (719)
T PRK11519        586 LIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELL------MSERFAELVNWAS--KNYDLVLIDTPPILAVTDAAIVG-  656 (719)
T ss_pred             hCCCCCHHHhecccCcCCEEEEeCCCCCCCHHHHh------hHHHHHHHHHHHH--hcCCEEEEeCCCcccchHHHHHH-
Confidence            22223333332   238999999987655544332      2447888999887  44999999999977532112221 


Q ss_pred             hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                         ..+|.+|+|+..+......+...++.+++.+.++.|+|+|+++
T Consensus       657 ---~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~  699 (719)
T PRK11519        657 ---RHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF  699 (719)
T ss_pred             ---HHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence               5789999999999999999999999999999999999999986

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.85  E-value=2e-20  Score=183.31  Aligned_cols=179  Identities=16%  Similarity=0.235  Sum_probs=138.5

Q ss_pred             ChHHHHhhhcc-----CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347         35 GIELVKSHLSN-----VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH  105 (294)
Q Consensus        35 ~~~~i~~~~~~-----~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~  105 (294)
                      ..+.||..+..     ..++|+|+|.++|+||||+|.|||..++  ..|+||++||+|++.+.++..|+.....    +.
T Consensus       514 a~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la--~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l  591 (726)
T PRK09841        514 AVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIA--QSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYL  591 (726)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHh
Confidence            45556665422     4689999999999999999999999999  8999999999999999998888876542    22


Q ss_pred             cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      .+...++++..   .++++++|+|....++.+.+.      ...+.++++.++  +.||+||||+||.........+.  
T Consensus       592 ~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~ell~------~~~~~~ll~~l~--~~yD~IIIDtPP~~~~~Da~~la--  661 (726)
T PRK09841        592 AGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLM------RDRMRQLLEWAN--DHYDLVIVDTPPMLAVSDAAVVG--  661 (726)
T ss_pred             CCCCCHHHheeccCCCCEEEEeCCCCCCCHHHHhC------cHHHHHHHHHHH--hcCCEEEEeCCCccccchHHHHH--
Confidence            22233333322   369999999876555443331      237888888887  44999999999987532222222  


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                        ..+|.+|+|+..+......+...++.+.+.+.+..|+|+|+++
T Consensus       662 --~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~  704 (726)
T PRK09841        662 --RSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI  704 (726)
T ss_pred             --HhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence              4689999999999999999999999999999999999999986

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.84  E-value=1.2e-20  Score=148.32  Aligned_cols=107  Identities=37%  Similarity=0.442  Sum_probs=92.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      +|+|+++|||+||||++.++|..++  .+|.+|+++|+|++++++.                                  
T Consensus         1 ~i~~~~~kgg~gkt~~~~~~a~~~~--~~~~~~~~vd~D~~~~~~~----------------------------------   44 (139)
T cd02038           1 IIAVTSGKGGVGKTNISANLALALA--KLGKRVLLLDADLGLANLD----------------------------------   44 (139)
T ss_pred             CEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEECCCCCCCCC----------------------------------
Confidence            4789999999999999999999999  8999999999998764321                                  


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                                                     ||+||+|+|++.+......+     ..+|.+++|+.++..+++.+.+++
T Consensus        45 -------------------------------yd~VIiD~p~~~~~~~~~~l-----~~aD~vviv~~~~~~s~~~~~~~l   88 (139)
T cd02038          45 -------------------------------YDYIIIDTGAGISDNVLDFF-----LAADEVIVVTTPEPTSITDAYALI   88 (139)
T ss_pred             -------------------------------CCEEEEECCCCCCHHHHHHH-----HhCCeEEEEcCCChhHHHHHHHHH
Confidence                                           89999999999886655444     579999999999999999999999


Q ss_pred             HHHHhc-CCCeeEEEecccc
Q psy11347        209 DFCRKV-NIPIIGVVENMAT  227 (294)
Q Consensus       209 ~~l~~~-~~~~~~vvvN~~~  227 (294)
                      +.+.+. +....++|+||++
T Consensus        89 ~~l~~~~~~~~~~lVvN~~~  108 (139)
T cd02038          89 KKLAKQLRVLNFRVVVNRAE  108 (139)
T ss_pred             HHHHHhcCCCCEEEEEeCCC
Confidence            888654 4456889999986

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=99.83  E-value=1.7e-20  Score=161.91  Aligned_cols=176  Identities=22%  Similarity=0.254  Sum_probs=108.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---ccccCCCCcceec---------
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---HQSASGWSPVFLE---------  117 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~~~~~~~~~~~~~---------  117 (294)
                      +.++++|||+||||++.++|..++  ..|+||++||+|+. ++++..|+.+....   ......+......         
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a--~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~   78 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLA--EQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR   78 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHH--HCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHH
Confidence            678889999999999999999999  89999999999996 69999998863100   0001111000000         


Q ss_pred             -cCeEEEecccccCCC----CcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-HHHH-------HHHhhc
Q psy11347        118 -ENLSVMSIGFLLNSP----DDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-HLSL-------VQYLKG  184 (294)
Q Consensus       118 -~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-~~~~-------~~~l~~  184 (294)
                       +.++.+..+......    ......++....-.+..+.+.+...+ ||+||+|+||....- .+..       ...+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~-yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d  157 (254)
T cd00550          79 QEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAE-YDVVVFDTAPTGHTLRLLSLPTVLSWAREILSD  157 (254)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcC
Confidence             011111111000000    00000011111112333334443234 999999999853211 1111       122333


Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccccc
Q psy11347        185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV  229 (294)
Q Consensus       185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~  229 (294)
                      ...+.+++|+.++..++..+.+.++.++..+++..++|+|++.+.
T Consensus       158 ~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~  202 (254)
T cd00550         158 PERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE  202 (254)
T ss_pred             CcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence            456789999999999999999999999999999999999998753

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.83  E-value=1.8e-20  Score=158.28  Aligned_cols=167  Identities=22%  Similarity=0.273  Sum_probs=113.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC-------CChhhhcccccccccc--ccCCCCc---c---
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG-------PSMPRMMGLLNEQVHQ--SASGWSP---V---  114 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~-------~~l~~~lg~~~~~~~~--~~~~~~~---~---  114 (294)
                      +.++++|||+||||++.++|..++  ..|+||+++|+|+..       +++..+++..+.....  .......   .   
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a--~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   78 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLA--EEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERA   78 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhc
Confidence            468899999999999999999999  899999999999988       3555555531111000  0000000   0   


Q ss_pred             eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ....+..+++.+...+++.+.+         .+.++++.+...+ ||+||+|+||............+....+|.+++|+
T Consensus        79 ~~~~~~~~~~~~~~~p~~~ell---------~~~~l~~~l~~~~-yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~  148 (217)
T cd02035          79 WGGEGGLMLELAAALPGIEELA---------SLLAVFREFSEGL-YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVT  148 (217)
T ss_pred             ccchhhhHHhHhccCCCHHHHH---------HHHHHHHHHhcCC-CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEe
Confidence            0012333344443333333322         3667777776333 99999999997432222233333223458999999


Q ss_pred             CCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        195 TPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .++..+++.+.+.++.++..+.+..++|+|++..
T Consensus       149 ~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~  182 (217)
T cd02035         149 LPEKLPLYETERAITELALYGIPVDAVVVNRVLP  182 (217)
T ss_pred             CCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence            9999999999999999999999999999999863

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.83  E-value=1.1e-19  Score=135.95  Aligned_cols=102  Identities=25%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      +|++++.|||+||||++.+||..++  .. |++|+++|+|++.++                                   
T Consensus         1 ~i~~~~~kgg~gkt~~~~~la~~~~--~~~~~~~~l~d~d~~~~~-----------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALA--KEAGRRVLLVDLDLQFGD-----------------------------------   43 (106)
T ss_pred             CEEEECCCCCCcHHHHHHHHHHHHH--hcCCCcEEEEECCCCCCC-----------------------------------
Confidence            4789999999999999999999999  77 999999999998632                                   


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE  207 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~  207 (294)
                                                       |+||+|+||+........+     ..+|.+++|+.++..++..+.++
T Consensus        44 ---------------------------------D~IIiDtpp~~~~~~~~~l-----~~aD~vlvvv~~~~~s~~~~~~~   85 (106)
T cd03111          44 ---------------------------------DYVVVDLGRSLDEVSLAAL-----DQADRVFLVTQQDLPSIRNAKRL   85 (106)
T ss_pred             ---------------------------------CEEEEeCCCCcCHHHHHHH-----HHcCeEEEEecCChHHHHHHHHH
Confidence                                             7999999999986655444     57899999999999999999999


Q ss_pred             HHHHHhcCCC---eeEEEecc
Q psy11347        208 IDFCRKVNIP---IIGVVENM  225 (294)
Q Consensus       208 l~~l~~~~~~---~~~vvvN~  225 (294)
                      ++.+++.+.+   ...+|+||
T Consensus        86 ~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          86 LELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHcCCCCcCceEEEecC
Confidence            9999887643   78899996

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.82  E-value=3.5e-19  Score=147.98  Aligned_cols=185  Identities=17%  Similarity=0.260  Sum_probs=125.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      |++|+|.|.|||+||||.+..||..|+  .+|.+|++||+||+.+- ..+.....     ....|.     +++.+..  
T Consensus         1 M~vItf~s~KGGaGKTT~~~~LAs~la--~~G~~V~lIDaDpn~pl-~~W~~~a~-----~~~~~~-----~~~~V~~--   65 (231)
T PF07015_consen    1 MPVITFASSKGGAGKTTAAMALASELA--ARGARVALIDADPNQPL-AKWAENAQ-----RPGAWP-----DRIEVYE--   65 (231)
T ss_pred             CCeEEEecCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCcH-HHHHHhcc-----ccCCCC-----CCeeEEe--
Confidence            689999999999999999999999999  89999999999998742 22211100     001111     1122211  


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~  206 (294)
                                    ......+...++...... |||||||+.++.+....   .++  ..+|.||+|+.++..+...+.+
T Consensus        66 --------------~~e~~~l~~~~e~a~~~~-~d~VlvDleG~as~~~~---~ai--a~sDlVlIP~~~s~lD~~eA~~  125 (231)
T PF07015_consen   66 --------------ADELTILEDAYEAAEASG-FDFVLVDLEGGASELND---YAI--ARSDLVLIPMQPSQLDADEAAK  125 (231)
T ss_pred             --------------ccchhhHHHHHHHHHhcC-CCEEEEeCCCCCchhHH---HHH--HHCCEEEECCCCChHHHHHHHH
Confidence                          111225666666654333 99999999977764332   223  5799999999999999999999


Q ss_pred             HHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccc
Q psy11347        207 EIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSA  278 (294)
Q Consensus       207 ~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v  278 (294)
                      +++++.+.      +++ ..|+++|++..         ........+.++++  ++|++ ..+.....+.+-...|...
T Consensus       126 t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~~---------~~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~l~  192 (231)
T PF07015_consen  126 TFKWVRRLEKAERRDIP-AAVLFTRVPAA---------RLTRAQRIISEQLE--SLPVLDTELHERDAFRAMFSRGLLH  192 (231)
T ss_pred             HHHHHHHHHHhhCCCCC-eeEEEecCCcc---------hhhHHHHHHHHHHh--cCCccccccccHHHHHHHHHhcchH
Confidence            98888654      234 57899997621         11111223345544  58888 5788889998888888544

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.79  E-value=2.4e-19  Score=149.46  Aligned_cols=207  Identities=26%  Similarity=0.287  Sum_probs=115.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEe-cc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMS-IG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~-~~  126 (294)
                      .+|+|.|+|||+||||+|.|||.+|+  ..|++|.++|+|..++++..+++.........           ++.+.. ..
T Consensus         1 HiIvV~sgKGGvGKSTva~~lA~aLa--~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-----------gi~Lp~p~~   67 (261)
T PF09140_consen    1 HIIVVGSGKGGVGKSTVAVNLAVALA--RMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-----------GIELPVPSH   67 (261)
T ss_dssp             EEEEEE-SSTTTTHHHHHHHHHHHHH--CTT--EEEEE--TTT-HHHHHHHHHHHHHHHH-----------T------EE
T ss_pred             CEEEEecCCCCCcHHHHHHHHHHHHH--HCCCeEEEEecCCCCCCHHHHHhccchhHHhc-----------CcccCCccc
Confidence            37999999999999999999999999  99999999999999999999997654432211           111110 01


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHH---
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD---  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~---  203 (294)
                      ..+......+..........+.+++..+. .+ +||||||+|+ .++.....+  .  ..||.++.|..++..++.-   
T Consensus        68 ~~L~~~~~~v~~~~~~~~~~L~q~l~~l~-~~-~DfLVID~PG-td~~lsr~A--h--s~ADtLiTPlNdSfvDfDllg~  140 (261)
T PF09140_consen   68 FFLPPDQASVWEGENVEDKRLEQALADLE-GD-LDFLVIDTPG-TDDRLSRVA--H--SMADTLITPLNDSFVDFDLLGQ  140 (261)
T ss_dssp             E-SSSHHHHTTS-HHHHHHHHHHHHHHHH-HH--SEEEEEE-S-SS-HHHHHH--H--HT-SEEEEEEESSHHHHCCCEE
T ss_pred             eeecccccccccCcchhHHHHHHHHHHHh-cC-CCEEEEeCCC-CCcHHHHHH--H--HhCCEEEccCchhHHhHHHHhc
Confidence            11111000111111122347888888876 34 9999999994 443332222  1  4799999999887766521   


Q ss_pred             -------------HHHHHHHHHhc-----CCCeeEEEe-ccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347        204 -------------VRKEIDFCRKV-----NIPIIGVVE-NMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI  264 (294)
Q Consensus       204 -------------~~~~l~~l~~~-----~~~~~~vvv-N~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~  264 (294)
                                   ...++-..++.     +...-+||+ ||...      ....-.++..+.++++.+..|+.+..-+..
T Consensus       141 vD~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~------~~a~Nk~~~~~~l~~ls~rigfr~~~G~~e  214 (261)
T PF09140_consen  141 VDPETFKVIGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSH------LDARNKRRVEEALEELSKRIGFRVAPGFSE  214 (261)
T ss_dssp             E-TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--------HHHHHHHHHHHHHHHHHHT-EEEE--B-
T ss_pred             cCcccceecCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccH------HHhHHHHHHHHHHHHHHHhhCceeCCCcch
Confidence                         22233333322     233445554 77642      111111123445667778889999988888


Q ss_pred             CchhhhhccCCccccc
Q psy11347        265 DPLVTRHCDEGTSAID  280 (294)
Q Consensus       265 ~~~~~~a~~~g~~v~~  280 (294)
                      ..-+.|.-..|.++.+
T Consensus       215 Rvi~RelFp~GlTllD  230 (261)
T PF09140_consen  215 RVIYRELFPRGLTLLD  230 (261)
T ss_dssp             -HHHCCCGGGT--GGG
T ss_pred             hhhhHHhccccchhhc
Confidence            8888999999999998

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.78  E-value=4.3e-18  Score=126.98  Aligned_cols=99  Identities=27%  Similarity=0.422  Sum_probs=84.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      +|+|.+.|||+||||++.+||.+++  ..|.+|+++|+|++                                       
T Consensus         1 ~i~~~~~kgG~Gkst~~~~la~~~~--~~~~~vl~~d~d~~---------------------------------------   39 (104)
T cd02042           1 VIAVANQKGGVGKTTTAVNLAAALA--RRGKRVLLIDLDPQ---------------------------------------   39 (104)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHH--hCCCcEEEEeCCCC---------------------------------------
Confidence            4889999999999999999999999  89999999999985                                       


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                                                     ||+||+|+|++.+......+     ..+|.+++|+.++..+++.+.+++
T Consensus        40 -------------------------------~d~viiD~p~~~~~~~~~~l-----~~ad~viv~~~~~~~s~~~~~~~~   83 (104)
T cd02042          40 -------------------------------YDYIIIDTPPSLGLLTRNAL-----AAADLVLIPVQPSPLDLDGLEKLL   83 (104)
T ss_pred             -------------------------------CCEEEEeCcCCCCHHHHHHH-----HHCCEEEEeccCCHHHHHHHHHHH
Confidence                                           79999999999886555444     579999999999999999999998


Q ss_pred             H---HHHhc--CCCeeEEEec
Q psy11347        209 D---FCRKV--NIPIIGVVEN  224 (294)
Q Consensus       209 ~---~l~~~--~~~~~~vvvN  224 (294)
                      +   ..+..  .....++|+|
T Consensus        84 ~~~~~~~~~~~~~~~~~vv~n  104 (104)
T cd02042          84 ETLILEDRLNPDLDILGILPT  104 (104)
T ss_pred             HHHHHHHhcCCCCceEEEEeC
Confidence            8   33322  3457788876

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG2825|consensus

Probab=99.77  E-value=1.2e-18  Score=143.88  Aligned_cols=227  Identities=19%  Similarity=0.254  Sum_probs=151.0

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCC--
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASG--  110 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~--  110 (294)
                      +|..+.+.+.+++....+.|++|||||||||.++.||..|+  +.+.+|++|-+||. ++++..|+.+....+....+  
T Consensus         4 dple~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla--~~r~~vLiISTDPA-HNlSDAF~qkftk~pt~V~Gf~   80 (323)
T KOG2825|consen    4 DPLEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLA--KVRESVLIISTDPA-HNLSDAFSQKFTKTPTKVEGFE   80 (323)
T ss_pred             CccchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHh--ccCCceEEeecCcc-cchHHHHHHHhcCCCccccChh
Confidence            46666888899999999999999999999999999999999  89999999999995 47777776554432222211  


Q ss_pred             -CCcceeccCeEEEecccccCCC--Ccc-----------eeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC----
Q psy11347        111 -WSPVFLEENLSVMSIGFLLNSP--DDA-----------VIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS----  172 (294)
Q Consensus       111 -~~~~~~~~~l~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~----  172 (294)
                       +-...+++++.+-.......+.  .+.           ...++-...-.+.+++..++..+ ||.||+|+.|.-.    
T Consensus        81 nLfAMEIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~-F~~vVFDTAPTGHTLRl  159 (323)
T KOG2825|consen   81 NLFAMEIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMN-FDVVVFDTAPTGHTLRL  159 (323)
T ss_pred             hheeeecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccc-cceEEeccCCCcceehh
Confidence             2222222221110000000000  000           00011122224667777777445 9999999997321    


Q ss_pred             --------------------------------------h--------HH----HHHHHHhhcCCCcEEEEecCCchhhHH
Q psy11347        173 --------------------------------------D--------EH----LSLVQYLKGLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       173 --------------------------------------~--------~~----~~~~~~l~~~~ad~vliv~~~~~~s~~  202 (294)
                                                            .        ..    -.+...+....++..|+|+.++..|+.
T Consensus       160 L~fP~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflsly  239 (323)
T KOG2825|consen  160 LQFPTTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLY  239 (323)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHH
Confidence                                                  0        00    111222333567888999999999999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccc-----cCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATF-----VCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      .+.|++..+.+.+++...+|+|+.-+     .|++|..+..++.++.+.+++..+.+.+--+..+|
T Consensus       240 EteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~  305 (323)
T KOG2825|consen  240 ETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLP  305 (323)
T ss_pred             HHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccch
Confidence            99999999999999999999999543     36778778888888888888888776544443333

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=99.71  E-value=4.6e-17  Score=143.69  Aligned_cols=170  Identities=23%  Similarity=0.310  Sum_probs=105.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      ++.|++|||||||||+|+.+|.+++  .+|+||+++..||. +++...||.+...-+.....      .+|++.+.....
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~~~A--~~G~rtLlvS~Dpa-~~L~d~l~~~~~~~~~~v~~------~~~L~a~eid~~   72 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALALALA--RRGKRTLLVSTDPA-HSLSDVLGQKLGGEPTKVEG------VPNLSAMEIDPE   72 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HTTS-EEEEESSTT-THHHHHHTS--BSS-EEETT------CSSEEEEE--HH
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHh--hCCCCeeEeecCCC-ccHHHHhCCcCCCCCeEecC------CCCceeeecCHH
Confidence            3677889999999999999999999  89999999999995 57888888754322111110      022222111000


Q ss_pred             -----------------cC--CC----Ccce-eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC------------
Q psy11347        129 -----------------LN--SP----DDAV-IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS------------  172 (294)
Q Consensus       129 -----------------~~--~~----~~~~-~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~------------  172 (294)
                                       ..  ..    .... ..++-.....+..+.+.+.. +.||+||+|+||.-.            
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~-~~~D~IVvDt~ptg~tLrlL~lP~~l~  151 (305)
T PF02374_consen   73 AELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLES-GEYDLIVVDTPPTGHTLRLLSLPERLR  151 (305)
T ss_dssp             HHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHH-CSTSEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHh-CCCCEEEECCCCcHHHHHHHhHHHHHH
Confidence                             00  00    0000 00111222244455555543 349999999997321            


Q ss_pred             --------------------------h---------------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHH
Q psy11347        173 --------------------------D---------------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFC  211 (294)
Q Consensus       173 --------------------------~---------------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l  211 (294)
                                                .               ........+.....+.+++|++|+..++..+.+++..+
T Consensus       152 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L  231 (305)
T PF02374_consen  152 WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTEL  231 (305)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence                                      0               00011122323345679999999999999999999999


Q ss_pred             HhcCCCeeEEEeccccc
Q psy11347        212 RKVNIPIIGVVENMATF  228 (294)
Q Consensus       212 ~~~~~~~~~vvvN~~~~  228 (294)
                      +..+++.-++|+||+-+
T Consensus       232 ~~~gi~v~~vVvNrvlp  248 (305)
T PF02374_consen  232 KLYGIPVDAVVVNRVLP  248 (305)
T ss_dssp             HHTT-EEEEEEEEEE-T
T ss_pred             HhcCCccCeEEEEcccc
Confidence            99999999999999864

...

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.67  E-value=1.1e-16  Score=128.20  Aligned_cols=140  Identities=23%  Similarity=0.321  Sum_probs=97.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccccC------------CCCcc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSAS------------GWSPV  114 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~~------------~~~~~  114 (294)
                      |+|+|+|.+||+||||+|.+||..|+  ..+++|+++|+|...+++..+++.+.. .+.....            .+..+
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la--~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~   78 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALA--RKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDH   78 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHH--HTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH--hcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHH
Confidence            68999999999999999999999999  889999999999999999999988776 2211111            11222


Q ss_pred             ee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347        115 FL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI  191 (294)
Q Consensus       115 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl  191 (294)
                      ..   ..++++++.......       ......+.+..+++.++.  .||+||+|+|+.........  .+  ..+|.++
T Consensus        79 ~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~li~~l~~--~yd~IivD~~~~~~~~~~~~--~l--~~~D~ii  145 (157)
T PF13614_consen   79 IYSDAHDGLDLLPPPSSPED-------LEELTPEDVEELIDALKE--HYDYIIVDLPSSLSNPDTQA--VL--ELADKII  145 (157)
T ss_dssp             CEEESSTTEEEE--SSSSHH-------HHHHTSHHHHHHHHHHHH--HSSEEEEEEESTTTHTHHHH--HH--TTHSEEE
T ss_pred             heeccCCCeEEecCCCCCCc-------hhhcCHHHHHHHHHHHHH--cCCEEEEECcCCccHHHHHH--HH--HHCCEEE
Confidence            22   267777765432211       111234477888888873  49999999999887654321  22  6899999


Q ss_pred             EecCCchhhHH
Q psy11347        192 VVTTPQEVSLL  202 (294)
Q Consensus       192 iv~~~~~~s~~  202 (294)
                      +|+.++..+++
T Consensus       146 ~v~~~~~~s~~  156 (157)
T PF13614_consen  146 LVVRPDVTSIR  156 (157)
T ss_dssp             EEEETTHHHHH
T ss_pred             EEECCCccccc
Confidence            99999998875

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.62  E-value=2.3e-15  Score=132.70  Aligned_cols=176  Identities=20%  Similarity=0.269  Sum_probs=111.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC-C---------------C
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS-G---------------W  111 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~-~---------------~  111 (294)
                      ..|.+++|||||||||+|+++|..++  ..|++|+++-+||. +++...|+.+......... .               |
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPA-hsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~   78 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPA-HSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYW   78 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCC-CchHhhhccccCCchhhcCCCCceeeecHHHHHHHHH
Confidence            46788889999999999999999999  88999999999995 5888888774332111111 0               1


Q ss_pred             CcceeccCeEEEecccc--cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----------------
Q psy11347        112 SPVFLEENLSVMSIGFL--LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-----------------  172 (294)
Q Consensus       112 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-----------------  172 (294)
                      +.+.  +.+.-......  ....+.....++-.....+..+.+.+...+ ||+||+|+||...                 
T Consensus        79 ~~v~--~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~-yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~  155 (322)
T COG0003          79 DEVK--DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGE-YDVIVVDTAPTGHTLRLLSLPEVLGWYLEK  155 (322)
T ss_pred             HHHH--HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccC-CCEEEEcCCChHHHHHHhccHHHHHHHHHh
Confidence            1110  11111111110  111112222233333335566666666445 9999999997321                 


Q ss_pred             --------------------------hHHHHHHH-----------HhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC
Q psy11347        173 --------------------------DEHLSLVQ-----------YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN  215 (294)
Q Consensus       173 --------------------------~~~~~~~~-----------~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~  215 (294)
                                                +..+..++           .+....-..+.+|..|+..++..+.+.+..+...+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~  235 (322)
T COG0003         156 LFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYG  235 (322)
T ss_pred             hhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcC
Confidence                                      00111111           11112245678999999999999999999999999


Q ss_pred             CCeeEEEecccccc
Q psy11347        216 IPIIGVVENMATFV  229 (294)
Q Consensus       216 ~~~~~vvvN~~~~~  229 (294)
                      ++..++++|++-+.
T Consensus       236 i~v~~vi~n~~~p~  249 (322)
T COG0003         236 IPVDAVIVNKILPD  249 (322)
T ss_pred             Cchheeeeeccccc
Confidence            99999999998753

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.55  E-value=1.8e-13  Score=108.39  Aligned_cols=143  Identities=20%  Similarity=0.201  Sum_probs=83.9

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh-hhhccccccccccccCCCCcceeccCeEE--Eecccc
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM-PRMMGLLNEQVHQSASGWSPVFLEENLSV--MSIGFL  128 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l-~~~lg~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~  128 (294)
                      .+.|++|+||||++.+++..+.  ..|.+|+++|+|++.... ...++...        .+.+....+++.+  ++.+..
T Consensus         3 ~~~G~~GsGKTt~~~~l~~~~~--~~g~~v~ii~~D~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~   72 (148)
T cd03114           3 GITGVPGAGKSTLIDALITALR--ARGKRVAVLAIDPSSPFSGGAILGDRI--------RMERHASDPGVFIRSLATRGF   72 (148)
T ss_pred             EEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEeCCCCCCcccchhcCce--------EhhheecCCCceEEEcCCcCc
Confidence            4459999999999999999999  899999999999864321 12222110        1111111233332  333311


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l  208 (294)
                      .....           ....+.++.++.. +||+||||+ ++........+     ..+|.+|+|++|+   ..+++.++
T Consensus        73 ~~~~~-----------~~~~~~~~~~~~~-~~D~iiIDt-aG~~~~~~~~~-----~~Ad~~ivv~tpe---~~D~y~~~  131 (148)
T cd03114          73 LGGLS-----------RATPEVIRVLDAA-GFDVIIVET-VGVGQSEVDIA-----SMADTTVVVMAPG---AGDDIQAI  131 (148)
T ss_pred             ccccc-----------hhHHHHHHHHHhc-CCCEEEEEC-CccChhhhhHH-----HhCCEEEEEECCC---chhHHHHh
Confidence            11111           1233344444323 399999999 56665444333     5799999999999   44444444


Q ss_pred             HHHHhcCCCeeEEEecccc
Q psy11347        209 DFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       209 ~~l~~~~~~~~~vvvN~~~  227 (294)
                      +...-...  -.+++|+++
T Consensus       132 k~~~~~~~--~~~~~~k~~  148 (148)
T cd03114         132 KAGIMEIA--DIVVVNKAD  148 (148)
T ss_pred             hhhHhhhc--CEEEEeCCC
Confidence            44322222  357888864

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.48  E-value=1.4e-12  Score=113.40  Aligned_cols=168  Identities=17%  Similarity=0.193  Sum_probs=97.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +++|+++ |++|+||||++.+||..++  ..|++|+++|+|+.......           ....|..   ..++.+++..
T Consensus        72 ~~vi~l~-G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~-----------ql~~~~~---~~~i~~~~~~  134 (272)
T TIGR00064        72 PNVILFV-GVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIE-----------QLEEWAK---RLGVDVIKQK  134 (272)
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHH-----------HHHHHHH---hCCeEEEeCC
Confidence            5677777 8999999999999999999  88999999999985422100           0001111   1123333322


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCCc
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTPQ  197 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~~  197 (294)
                      ..    .+        ........+..... ++||+||||+|+....+.  +..+..+.       ....|.+++|+...
T Consensus       135 ~~----~d--------p~~~~~~~l~~~~~-~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~  201 (272)
T TIGR00064       135 EG----AD--------PAAVAFDAIQKAKA-RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT  201 (272)
T ss_pred             CC----CC--------HHHHHHHHHHHHHH-CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence            11    00        01122233333332 349999999998764222  11111111       12378899998886


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ..-..+.......+..+  ..++|+|+++..            .....+-.+...+++|+.
T Consensus       202 -~~~~~~~~~~~f~~~~~--~~g~IlTKlDe~------------~~~G~~l~~~~~~~~Pi~  248 (272)
T TIGR00064       202 -TGQNALEQAKVFNEAVG--LTGIILTKLDGT------------AKGGIILSIAYELKLPIK  248 (272)
T ss_pred             -CCHHHHHHHHHHHhhCC--CCEEEEEccCCC------------CCccHHHHHHHHHCcCEE
Confidence             44455555444444444  469999999831            112344555556777777

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.43  E-value=7.4e-12  Score=105.91  Aligned_cols=148  Identities=19%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      |++++.+.++||||||||++.+||.+++  ..|.+|+++|+|++++++..+......                .+.++. 
T Consensus         1 m~~i~~i~~~KGGvGKSt~a~~la~~l~--~~g~~vl~iD~D~~n~~~~~~~~l~~~----------------~~~i~~-   61 (241)
T PRK13886          1 MAKIHMVLQGKGGVGKSFIAATIAQYKA--SKGQKPLCIDTDPVNATFEGYKALNVR----------------RLNIMD-   61 (241)
T ss_pred             CCeEEEEecCCCCCcHHHHHHHHHHHHH--hCCCCEEEEECCCCCchhhhHHhcCCc----------------ceeccc-
Confidence            6789999999999999999999999999  899999999999987654333211111                111110 


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH------HHHHhhcCCCcEEEE-ecCCch
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS------LVQYLKGLPDIGAIV-VTTPQE  198 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~------~~~~l~~~~ad~vli-v~~~~~  198 (294)
                      .             .......+..+++.+...+ -| +|||.++..-.++..      +...+.+..-+.++. |++...
T Consensus        62 ~-------------~~i~~r~fD~Lve~i~~~~-~d-vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~  126 (241)
T PRK13886         62 G-------------DEINTRNFDALVEMIASTE-GD-VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQ  126 (241)
T ss_pred             C-------------CccchhhHHHHHHHHhccC-CC-EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCc
Confidence            0             0011224556666654222 45 678888754332221      112222245565654 666665


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEE-ecccc
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVV-ENMAT  227 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vv-vN~~~  227 (294)
                      .....+..+.+.++..+-...+|| .|.+-
T Consensus       127 ~~~dtl~~~~~l~~~~~~~~~~Vvw~N~~~  156 (241)
T PRK13886        127 ALLDTVSGFAQLASQFPAECLFVVWLNPYW  156 (241)
T ss_pred             ccHHHHHHHHHHHHHcCCCceEEEEecCcc
Confidence            555555555555555543344555 78754

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=99.41  E-value=1.4e-12  Score=110.49  Aligned_cols=196  Identities=17%  Similarity=0.117  Sum_probs=111.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCC-cceeccCeEEE-eccc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWS-PVFLEENLSVM-SIGF  127 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~  127 (294)
                      |.|++...|+|||+++..|+.+|+  .+|++|.++--=..+..- .....+.. ......... +......+.+- |..+
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~--~~g~~v~~~KPv~~g~~~-~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~sp   77 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALR--EAGYSVAGYKPVQSGCEE-TDRNGDAL-ALQRLSGLPLDYEDVNPYRFEEPLSP   77 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH--HcCCceEEEeeEecCCCC-CCCcHHHH-HHHHHcCCCCChhhcCceeeCCCCCH
Confidence            678999999999999999999999  899999886521111000 00000000 000111110 00000111110 0000


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH---HHHHHhhcCCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL---SLVQYLKGLPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~---~~~~~l~~~~ad~vliv~~~~~~s~~~~  204 (294)
                      .+..   ... ........+.+.++.+.  ++||+||||+++++.....   .....+. ....-+++|+.++..++..+
T Consensus        78 ~~a~---~~~-~~~~~~~~i~~~~~~l~--~~~D~viIEg~gg~~~~~~~~~~~adl~~-~l~~pvilV~~~~~~~i~~~  150 (222)
T PRK00090         78 HLAA---ALE-GVAIDLEKISAALRRLA--QQYDLVLVEGAGGLLVPLTEDLTLADLAK-QLQLPVILVVGVKLGCINHT  150 (222)
T ss_pred             HHHH---HHh-CCCCCHHHHHHHHHHHH--hhCCEEEEECCCceeccCCCCCcHHHHHH-HhCCCEEEEECCCCcHHHHH
Confidence            0000   000 01122345666777665  3499999999977532211   1111111 12234889999999899999


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID  265 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~  265 (294)
                      ...++.++..+.+..++|+|+++..      ....   ..+..+.+.+.+++++++.||+-
T Consensus       151 ~~~i~~l~~~~~~i~gvIlN~~~~~------~~~~---~~~~~~~l~~~~gi~vlg~ip~~  202 (222)
T PRK00090        151 LLTLEAIRARGLPLAGWVANGIPPE------PGLR---HAENLATLERLLPAPLLGELPYL  202 (222)
T ss_pred             HHHHHHHHHCCCCeEEEEEccCCCc------chhH---HHHHHHHHHHHcCCCeEEecCCC
Confidence            9999999888999999999998631      0111   12345677777899999999984

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.41  E-value=2.1e-11  Score=99.20  Aligned_cols=166  Identities=17%  Similarity=0.215  Sum_probs=97.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL  129 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (294)
                      +.++.|+.|+||||++.++|..++  ..|.+|+++|+|...+.....+....              ...++.+.+.... 
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~~v~~i~~D~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~-   64 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLG--------------EQVGVPVFEEGEG-   64 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCChHHHHHHHHhc--------------ccCCeEEEecCCC-
Confidence            456669999999999999999999  78999999999987654433322100              0123444433210 


Q ss_pred             CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHHHHH
Q psy11347        130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~~~  206 (294)
                         .        .....+.+.+..... .+||+||+|+++...  ...+..+..+.. ...|.+++|+.+.. ..+....
T Consensus        65 ---~--------~~~~~~~~~~~~~~~-~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~~~  131 (173)
T cd03115          65 ---K--------DPVSIAKRAIEHARE-ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAVNQ  131 (173)
T ss_pred             ---C--------CHHHHHHHHHHHHHh-CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHHHH
Confidence               0        111233344444332 339999999998652  223333322221 24788888888742 2233333


Q ss_pred             HHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        207 EIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       207 ~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+..+..+  ..++|+|+++..       .    +....+. +.+..++|+.
T Consensus       132 ~~~~~~~~~--~~~viltk~D~~-------~----~~g~~~~-~~~~~~~p~~  170 (173)
T cd03115         132 AKAFNEALG--ITGVILTKLDGD-------A----RGGAALS-IRAVTGKPIK  170 (173)
T ss_pred             HHHHHhhCC--CCEEEEECCcCC-------C----Ccchhhh-hHHHHCcCeE
Confidence            333333444  579999998832       1    1122333 6777788775

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.40  E-value=2.2e-11  Score=113.52  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      +|+.+.|.++++|+||||++.+|+++|+  ++|++|..+...++..+...+         ........    .+++... 
T Consensus         2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~--~~G~~V~~fK~Gpd~~d~~~~---------~~~~g~~~----~~ld~~~-   65 (451)
T PRK01077          2 RMPALVIAAPASGSGKTTVTLGLMRALR--RRGLRVQPFKVGPDYIDPAYH---------TAATGRPS----RNLDSWM-   65 (451)
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHH--hCCCCcceeecCCCcccHHHH---------HHHhCCCc----ccCCcee-
Confidence            3678999999999999999999999999  899999999886542111000         00000000    1111000 


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCC
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                                      .....+++.+..+.  .+||++||+...++.+         ....++..+   .+. ||+|++.
T Consensus        66 ----------------~~~~~v~~~~~~~~--~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l---~~p-viLV~~~  123 (451)
T PRK01077         66 ----------------MGEELVRALFARAA--QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLL---GAP-VVLVVDA  123 (451)
T ss_pred             ----------------CCHHHHHHHHHHhc--ccCCEEEEECCCccccCCccCCCCCCHHHHHHHh---CCC-EEEEECC
Confidence                            01236677777765  3499999998855422         123333333   566 7777776


Q ss_pred             chhhHHH--HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        197 QEVSLLD--VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       197 ~~~s~~~--~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      ...+...  +...+..+ ..++++.++|+|+++.      .      +..+...+.++..|++++++||+++.+.
T Consensus       124 ~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~~------~------~~~~~l~~~l~~~gipvLG~IP~~~~l~  185 (451)
T PRK01077        124 SGMAQSAAALVLGFATF-DPDVRIAGVILNRVGS------E------RHYQLLREALERCGIPVLGALPRDAALA  185 (451)
T ss_pred             chHHHHHHHHHHHHHHh-CCCCCEEEEEEECCCC------h------hHHHHHHHHHHhcCCCEEEEeeCCcccC
Confidence            6533322  22222222 2367899999999852      1      1123445666668999999999998874

>PRK10867 signal recognition particle protein; Provisional

Probab=99.39  E-value=7.2e-12  Score=115.00  Aligned_cols=168  Identities=17%  Similarity=0.186  Sum_probs=100.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+.++.|.+|+||||++.+||.+|+  .. |++|+++|+|++.+.....+..              .....++.+.+.+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~aa~eQL~~--------------~a~~~gv~v~~~~  163 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPAAIEQLKT--------------LGEQIGVPVFPSG  163 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchHHHHHHHH--------------HHhhcCCeEEecC
Confidence            45666668999999999999999999  77 9999999999976543222211              0111234444332


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                      ..            ........+.++.....+ ||+|||||++...  ...+..+..+.. ...+.+++|++...  -++
T Consensus       164 ~~------------~dp~~i~~~a~~~a~~~~-~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~  228 (433)
T PRK10867        164 DG------------QDPVDIAKAALEEAKENG-YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQD  228 (433)
T ss_pred             CC------------CCHHHHHHHHHHHHHhcC-CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHH
Confidence            10            011224445555544334 9999999998663  222222222211 24667888887643  244


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +....+.+.+ .++..++|+|+.+..            .....+-.+...+++|+.
T Consensus       229 av~~a~~F~~-~~~i~giIlTKlD~~------------~rgG~alsi~~~~~~PI~  271 (433)
T PRK10867        229 AVNTAKAFNE-ALGLTGVILTKLDGD------------ARGGAALSIRAVTGKPIK  271 (433)
T ss_pred             HHHHHHHHHh-hCCCCEEEEeCccCc------------ccccHHHHHHHHHCcCEE
Confidence            4444444443 355679999998831            112245666667777765

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.37  E-value=2.2e-12  Score=97.69  Aligned_cols=113  Identities=25%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc-c
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL-L  129 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  129 (294)
                      .++.+|||+||||++.++|.+++  .+|++|+++|+|+  +++...++....               +...++-.+.. .
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~--~~g~~V~~id~D~--~~~~~~~~~~~~---------------~~~~~i~~g~~~~   62 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLA--EKGKPVLAIDADP--DDLPERLSVEVG---------------EIKLLLVMGMGRP   62 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCc--hhhHHHHhhccC---------------CceEEEEeccccc
Confidence            35678999999999999999999  8899999999999  233222222111               11111111111 1


Q ss_pred             CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347        130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV  193 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv  193 (294)
                      ........     ....+++++..+.... ||++++|+++++......+.     ..+|.+++|
T Consensus        63 ~~~g~~~~-----~n~~~~~~l~~~~~~~-~~~vivDt~ag~e~~~~~~~-----~~~d~vv~v  115 (116)
T cd02034          63 GGEGCYCP-----ENALLNALLRHLVLTR-DEQVVVDTEAGLEHLGRGTA-----EGVDLLVVV  115 (116)
T ss_pred             CCCCCEeh-----hhHHHHHHHHHeEccC-CCEEEEecHHHHHHHHhhcc-----ccCCEEEEe
Confidence            11111111     1126778888864334 99999999998864333222     478988876

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=99.36  E-value=1.7e-11  Score=102.24  Aligned_cols=202  Identities=16%  Similarity=0.155  Sum_probs=121.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE--
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM--  123 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~--  123 (294)
                      |+++++|++.-.|||||++++.|+.+|.  ..|++|.+.--=-.+..  .--........+.......-...-+...+  
T Consensus         1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~--~~g~~~~~~KPVqsG~~--~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~   76 (223)
T COG0132           1 MMKRFFVTGTDTGVGKTVVSAALAQALK--QQGYSVAGYKPVQTGSE--ETAENSDALVLQRLSGLDLSYELINPYRFKE   76 (223)
T ss_pred             CCceEEEEeCCCCccHHHHHHHHHHHHH--hCCCeeEEECceeeCCC--CCCCCchHHHHHHhcCCCcccccccceecCC
Confidence            6899999999999999999999999999  89999988632111100  00000000111111111110001111111  


Q ss_pred             ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH---HHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH---LSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~---~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                      |..+.+....+    ......+.+..-+..+.  +.||+|||.+.+|+..+.   ..+...+.+.... ||+|+.....+
T Consensus        77 P~sPhlAa~~e----g~~I~~~~l~~~l~~l~--~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lp-vILV~~~~LGt  149 (223)
T COG0132          77 PLSPHLAAELE----GRTIDLEKLSQGLRQLL--KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLP-VILVVGIKLGT  149 (223)
T ss_pred             CCCcHHHHhhc----CCcccHHHHHHHHHhhh--cccCEEEEeCCCceeeecCCcccHHHHHHHcCCC-EEEEecCCccH
Confidence            22222222211    11233345555555555  349999999998863211   1222223323445 89999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      ++++.-.++.++..+++..|+|+|++.+.       ..-.   ......+.+..+.|+++.+|+.++.
T Consensus       150 INHtlLt~eal~~~gl~l~G~I~n~~~~~-------~~~~---~~~~~~l~~~~~~p~~g~~p~~~~~  207 (223)
T COG0132         150 INHTLLTVEALRARGLPLAGWVANGINPE-------LDHY---AEINATLLKRIGAPLLGIIPYLPES  207 (223)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEccCCCc-------hhHH---HHHHHHHHHhcCCCccccccCCccc
Confidence            99999999999999999999999998731       1111   1112245567799999999997654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.35  E-value=1.3e-11  Score=90.00  Aligned_cols=95  Identities=39%  Similarity=0.560  Sum_probs=74.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLN  130 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (294)
                      .++++++|+||||++.+||..|+  +.|++|+++|                                             
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~--~~g~~v~~~~---------------------------------------------   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALA--KRGKRVLLID---------------------------------------------   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEC---------------------------------------------
Confidence            45667779999999999999999  8899999999                                             


Q ss_pred             CCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHH
Q psy11347        131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDF  210 (294)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~  210 (294)
                                                    |+||+|++++...........+  ..+|.+++|+.++..++....+..+.
T Consensus        35 ------------------------------d~iivD~~~~~~~~~~~~~~~~--~~~~~vi~v~~~~~~~~~~~~~~~~~   82 (99)
T cd01983          35 ------------------------------DYVLIDTPPGLGLLVLLCLLAL--LAADLVIIVTTPEALAVLGARRLTEV   82 (99)
T ss_pred             ------------------------------CEEEEeCCCCccchhhhhhhhh--hhCCEEEEecCCchhhHHHHHHHHHH
Confidence                                          8999999999876542111222  57999999999999999999988654


Q ss_pred             HH---hcCCCeeEEEec
Q psy11347        211 CR---KVNIPIIGVVEN  224 (294)
Q Consensus       211 l~---~~~~~~~~vvvN  224 (294)
                      ..   ..+....++|+|
T Consensus        83 ~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          83 VLELAIEGLRPVGVVVN   99 (99)
T ss_pred             HHHhhccCCceEEEEeC
Confidence            43   334446677766

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.33  E-value=5.6e-11  Score=105.52  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=94.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+++++ |.+|+||||++.+||..++  ..|++|+++|+|++.......+           ..|   ....++.+++..
T Consensus       114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql-----------~~~---a~~~~i~~~~~~  176 (318)
T PRK10416        114 PFVILVV-GVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQL-----------QVW---GERVGVPVIAQK  176 (318)
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHH-----------HHH---HHHcCceEEEeC
Confidence            4566666 6999999999999999999  8899999999998653211100           001   111234444332


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-------cCCCcEEEEecCCc
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-------GLPDIGAIVVTTPQ  197 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-------~~~ad~vliv~~~~  197 (294)
                      ... ++           .....+.+..... ++||+||||+|+....  ..+..+..+.       ....+.+++|+...
T Consensus       177 ~~~-dp-----------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~  243 (318)
T PRK10416        177 EGA-DP-----------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT  243 (318)
T ss_pred             CCC-CH-----------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence            110 00           0122222222221 3499999999987642  1112222211       12466778888776


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      . ............+..  ...++|+|+.+..            .....+-.+...+++|+.
T Consensus       244 ~-g~~~~~~a~~f~~~~--~~~giIlTKlD~t------------~~~G~~l~~~~~~~~Pi~  290 (318)
T PRK10416        244 T-GQNALSQAKAFHEAV--GLTGIILTKLDGT------------AKGGVVFAIADELGIPIK  290 (318)
T ss_pred             C-ChHHHHHHHHHHhhC--CCCEEEEECCCCC------------CCccHHHHHHHHHCCCEE
Confidence            3 334444443333333  4569999999831            112344455566788777

>TIGR00959 ffh signal recognition particle protein

Probab=99.32  E-value=3.6e-11  Score=110.36  Aligned_cols=170  Identities=18%  Similarity=0.193  Sum_probs=100.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+.+.+++|..|+||||++.+||.++. ...|++|+++|+|...+.....+...              ...-++.+...+
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~~a~~QL~~~--------------a~~~gvp~~~~~  162 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRPAAIEQLKVL--------------GQQVGVPVFALG  162 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccchHHHHHHHHH--------------HHhcCCceEecC
Confidence            356888889999999999999999986 14799999999999765422222110              000122222211


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                      .    ..        .......+.++.+...+ ||+||||+++...  ...+..+..+.. ...+.+++|++...  -++
T Consensus       163 ~----~~--------~P~~i~~~al~~~~~~~-~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t--gq~  227 (428)
T TIGR00959       163 K----GQ--------SPVEIARRALEYAKENG-FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT--GQD  227 (428)
T ss_pred             C----CC--------CHHHHHHHHHHHHHhcC-CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc--hHH
Confidence            0    00        01123455555554234 9999999998653  222322222211 24677888888653  345


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +....+.+. ..++..++|+|+.+..            .....+..+...+++|+.
T Consensus       228 ~~~~a~~f~-~~v~i~giIlTKlD~~------------~~~G~~lsi~~~~~~PI~  270 (428)
T TIGR00959       228 AVNTAKTFN-ERLGLTGVVLTKLDGD------------ARGGAALSVRSVTGKPIK  270 (428)
T ss_pred             HHHHHHHHH-hhCCCCEEEEeCccCc------------ccccHHHHHHHHHCcCEE
Confidence            555555554 2235669999998731            112346677777777776

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=99.32  E-value=7.1e-11  Score=100.67  Aligned_cols=200  Identities=17%  Similarity=0.177  Sum_probs=115.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh-cccccc--ccccccCCCCcceeccCeEE
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM-MGLLNE--QVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~-lg~~~~--~~~~~~~~~~~~~~~~~l~~  122 (294)
                      |++.+.|+++..|+|||+++..|+.+|.  .+|.+|.++.-=  ..+.... -+....  ........... . .+.+..
T Consensus         1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~--~~g~~v~~~KPi--~~g~~~~~~~~~~~D~~~l~~~~~~~~-~-~~~~~p   74 (231)
T PRK12374          1 MLKRFFITGTDTSVGKTVVSRALLQALA--SQGKTVAGYKPV--AKGSKETPEGLRNKDALVLQSVSSIEL-P-YEAVNP   74 (231)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEECcc--ccCCccCCCCCchHHHHHHHHhcCCCC-C-HHhccC
Confidence            5667999999999999999999999999  899999997432  2111000 000010  00011101000 0 000100


Q ss_pred             EecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH---HHHHHHhhcCCCcEEEEecCCchh
Q psy11347        123 MSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH---LSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~---~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      .+.........    .........+.+.++.+.  ..||+||||+.+++....   ...........+. +++|+.....
T Consensus        75 ~~~~~~~a~~~----~~~~i~~~~i~~~~~~l~--~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~p-vilV~~~~lg  147 (231)
T PRK12374         75 IALSEEESSVA----HSCPINYTLMSNGLANLS--EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLP-VLMVVGIQEG  147 (231)
T ss_pred             eecCCCcChHH----cCCcCCHHHHHHHHHHHH--hhCCEEEEECCCCcceeccCcccHHHHHHHhCCC-EEEEECCCcC
Confidence            00110000000    011111234555555555  349999999997543221   1111111113445 7888888888


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      .+..+...++.+...+++..++|+|++++.          .....+..+.+.+..++++++.||+.+.+
T Consensus       148 ~in~~lLt~~~l~~~~~~~~gvV~N~~~~~----------~~~~~~~~~~l~~~~~~~~lg~iP~~~~~  206 (231)
T PRK12374        148 CINHALLTAQAIANDGLPLIGWVANRINPG----------LAHYAEIIDVLGKKLPAPLIGELPYLPRA  206 (231)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEEEeCccCc----------hhhhhhHHHHHHHhcCCCEEEEeCCCCCC
Confidence            899999999999999999999999998631          11122335566667799999999987543

>TIGR00347 bioD dethiobiotin synthase

Probab=99.27  E-value=1.5e-11  Score=99.46  Aligned_cols=155  Identities=16%  Similarity=0.247  Sum_probs=92.1

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---ccccCCCCcceeccCeEE-Eeccc
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---HQSASGWSPVFLEENLSV-MSIGF  127 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~~~~~~~~~~~~~~~l~~-~~~~~  127 (294)
                      |++..+|+||||++.+|+.+|+  ++|+||.+++-......  . .+.+...+   ......|...   ..+.. .|...
T Consensus         2 I~~t~~~~GKT~va~~L~~~l~--~~g~~V~~~kP~~~~~~--~-~d~d~~~i~~~~~~~~~~~~~---~~~~~~~~~~p   73 (166)
T TIGR00347         2 VTGTDTGVGKTVASSALAAKLK--KAGYSVGYYKPVQTGIE--K-TNSDALLLQNISGTALDWDEV---NPYAFALPLSP   73 (166)
T ss_pred             eecCCCCccHHHHHHHHHHHHH--HCCCcEEEEEeeeeCCC--C-CchHHHHHHHHcCCCCchhcc---CCeeeCCCCCh
Confidence            6788999999999999999999  89999999753322110  0 00000000   0111112211   11111 00000


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEEecCCchhhH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIVVTTPQEVSL  201 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vliv~~~~~~s~  201 (294)
                      ...   ... ...+.....+.+.++.+.  +.||+||||+|++....      ....+..    ..+.+|+|+.....++
T Consensus        74 ~~~---~~~-~~~~~~~~~i~~~~~~l~--~~~D~viid~~g~~~~~~~~~~~~~dl~~~----~~~~vilV~~~~~~~~  143 (166)
T TIGR00347        74 HIA---ADQ-EGRPIDLEELSKHLRTLE--QKYDFVLVEGAGGLCVPITEEYTTADLIKL----LQLPVILVVRVKLGTI  143 (166)
T ss_pred             HHH---HHH-hCCCCCHHHHHHHHHHHH--hcCCEEEEEcCCccccCCCCCCcHHHHHHH----hCCCEEEEECCCCcHH
Confidence            000   000 001122235667777765  33999999999764321      1222322    3445899999999999


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEec
Q psy11347        202 LDVRKEIDFCRKVNIPIIGVVEN  224 (294)
Q Consensus       202 ~~~~~~l~~l~~~~~~~~~vvvN  224 (294)
                      +.+...++.+++.+.++.|+|+|
T Consensus       144 ~~~~~~~~~l~~~~~~i~gvv~N  166 (166)
T TIGR00347       144 NHTLLTVEHARQTGLTLAGVILN  166 (166)
T ss_pred             HHHHHHHHHHHHCCCCeEEEEeC
Confidence            99999999999999999999998

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.26  E-value=3.5e-10  Score=103.42  Aligned_cols=148  Identities=9%  Similarity=0.059  Sum_probs=87.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      .+..+.|.+|+||||++..||.+|+  ..|++|+++++|++.+.....+....              ...++.+..... 
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~aA~eQLk~~a--------------~~~~vp~~~~~~-  163 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAGAFDQLKQNA--------------TKARIPFYGSYT-  163 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchhHHHHHHHHh--------------hccCCeEEeecC-
Confidence            4555557899999999999999999  88999999999997653322221100              001222221110 


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhhc-CCCcEEEEecCCchhhHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDVR  205 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~~  205 (294)
                                 .........+.++.++.. +||+|||||++....  ..+..+..+.. ...+.+++|+++...  +.+.
T Consensus       164 -----------~~dp~~i~~~~l~~~~~~-~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~  229 (429)
T TIGR01425       164 -----------ESDPVKIASEGVEKFKKE-NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAE  229 (429)
T ss_pred             -----------CCCHHHHHHHHHHHHHhC-CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHH
Confidence                       001112445566666533 499999999976643  22222222211 346788899876532  2223


Q ss_pred             HHHHHHHhcCCCeeEEEeccccc
Q psy11347        206 KEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       206 ~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ...+.+.+ .....++|+++.|.
T Consensus       230 ~~a~~F~~-~~~~~g~IlTKlD~  251 (429)
T TIGR01425       230 AQAKAFKD-SVDVGSVIITKLDG  251 (429)
T ss_pred             HHHHHHHh-ccCCcEEEEECccC
Confidence            33344432 23456999999984

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.25  E-value=3e-10  Score=101.88  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++|+++ |.+|+||||++..||..+.  ..|++|+++++|++.......+.              ......++.+....
T Consensus       241 ~~vI~LV-GptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk--------------~yae~lgipv~v~~  303 (436)
T PRK11889        241 VQTIALI-GPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQ--------------DYVKTIGFEVIAVR  303 (436)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHH--------------HHhhhcCCcEEecC
Confidence            3566665 5699999999999999999  88999999999987522111111              00111223322211


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~  203 (294)
                                      ....+.+.+..++...+||+||||+++....  ..+.-+..+. ....+.+++|++++ ..-++
T Consensus       304 ----------------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d  366 (436)
T PRK11889        304 ----------------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKD  366 (436)
T ss_pred             ----------------CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHH
Confidence                            1225556776665222499999999976542  2222222221 23456678887654 33345


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV  268 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~  268 (294)
                      +...++.++..  ..-++|+.+.|..       .     ....+-.+....++|+.  +   .||+|-..
T Consensus       367 ~~~i~~~F~~~--~idglI~TKLDET-------~-----k~G~iLni~~~~~lPIsyit~GQ~VPeDI~~  422 (436)
T PRK11889        367 MIEIITNFKDI--HIDGIVFTKFDET-------A-----SSGELLKIPAVSSAPIVLMTDGQDVKKNIHI  422 (436)
T ss_pred             HHHHHHHhcCC--CCCEEEEEcccCC-------C-----CccHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence            56677777764  4559999999831       1     12234455556666665  3   47777544

>PRK13768 GTPase; Provisional

Probab=99.25  E-value=4.9e-11  Score=102.91  Aligned_cols=44  Identities=27%  Similarity=0.443  Sum_probs=36.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      |+. +.++.|+||+||||++.+++.+++  ..|++|+++|+|++...
T Consensus         1 ~~~-~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~D~~~~~   44 (253)
T PRK13768          1 MMY-IVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNLDPAVEY   44 (253)
T ss_pred             CcE-EEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEECCCcccc
Confidence            344 455557799999999999999999  89999999999997543

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=99.25  E-value=1.6e-10  Score=90.03  Aligned_cols=126  Identities=24%  Similarity=0.263  Sum_probs=95.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLN  130 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (294)
                      .|+.++| +|||+++..|+..|.  .+|.+|..++...+                                         
T Consensus         3 ~~~~~~~-~Gkt~~~~~l~~~l~--~~~~~v~~~kp~~~-----------------------------------------   38 (134)
T cd03109           3 GFGTGTD-IGKTVATAILARALK--EKGYRVAPLKPVQT-----------------------------------------   38 (134)
T ss_pred             EEeCCCC-cCHHHHHHHHHHHHH--HCCCeEEEEecCCC-----------------------------------------
Confidence            3444555 999999999999999  89999999976542                                         


Q ss_pred             CCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC------hHHHHHHHHhhcCCCcEEEEecCCchhhHHHH
Q psy11347        131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS------DEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~------~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~  204 (294)
                                                   ||++||++++++.      ......+..+   .+. +++|++++..+++++
T Consensus        39 -----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~---~~~-vllV~~~~~g~i~~a   85 (134)
T cd03109          39 -----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKEL---NLP-AILVTSAGLGSINHA   85 (134)
T ss_pred             -----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHh---CCC-EEEEEcCCCCcHhHH
Confidence                                         4788888876543      1123344333   444 789999999999999


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      ...++.++..++...+++.|+++.       .....   ....+.+.+..++++++.||
T Consensus        86 ~~~~~~l~~~g~~i~gvi~N~~~~-------~~~~~---~~~~~~i~~~~gip~LG~IP  134 (134)
T cd03109          86 FLTIEAARIKGIILNGVLGNVIVE-------KEGLA---TLNVETIERLTGIPVLGIVP  134 (134)
T ss_pred             HHHHHHHHhcCCceeEEEEccCCC-------ccchh---hhhHHHHHHhcCCCEEEeCC
Confidence            999999999999999999999762       22211   13467888899999999987

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=99.24  E-value=3.4e-11  Score=83.68  Aligned_cols=78  Identities=65%  Similarity=1.109  Sum_probs=62.0

Q ss_pred             cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347        161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF  240 (294)
Q Consensus       161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~  240 (294)
                      ||+|||+|||.++..+.+++.+   ..+..|+|++|...++..+.+.++.+++.+++.+|+|-||....|+.|.++..++
T Consensus         2 D~LiiD~PPGTgD~~l~~~~~~---~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iF   78 (81)
T PF10609_consen    2 DYLIIDLPPGTGDEHLTLMQYL---PIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIF   78 (81)
T ss_dssp             CEEEEE--SCSSSHHHHHHHHH-----SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETT
T ss_pred             CEEEEeCCCCCCcHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCC
Confidence            8999999999999999888887   4788999999999999999999999999999999999999999999999888776


Q ss_pred             C
Q psy11347        241 P  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus        79 g   79 (81)
T PF10609_consen   79 G   79 (81)
T ss_dssp             T
T ss_pred             C
Confidence            3

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=99.23  E-value=8.4e-11  Score=97.94  Aligned_cols=187  Identities=18%  Similarity=0.231  Sum_probs=109.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCc-ceeccCeEEEecc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSP-VFLEENLSVMSIG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  126 (294)
                      +.|.+++...|+|||+++..|+.+|.  .+|.+|.++--=.++...    +.+.. .......... ......+.+-   
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~--~~g~~v~~~KPi~~~~~~----d~d~~-~~~~~~~~~~~~~~~~~~~~~---   70 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALR--RRGIKVGYFKPIQTGPED----DEDAE-LIRELFGLSEPPDDPSPYTFD---   70 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHH--HTTSEEEEEEEEEESCCC----SSHHH-HHHHHCCTCCCHHHHECEEES---
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH--hCCCceEEEeeeEecCCC----CchHH-HHHHHhCCCcccccccccccC---
Confidence            46899999999999999999999999  899999886321111000    00000 0011111110 0000111110   


Q ss_pred             cccCCCC-cceeecCccchHHHHHH-HHhhccCCCccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        127 FLLNSPD-DAVIWRGPKKNTMIRQF-LSEVDWGNGLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       127 ~~~~~~~-~~~~~~~~~~~~~l~~~-l~~l~~~~~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                          .+. .............+.++ ++.+.  +.+|++||++..+...      .....+..+   .+. ||+|+....
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~D~vlVEGag~~~~~~~~~~~n~dia~~L---~a~-vIlV~~~~~  140 (199)
T PF13500_consen   71 ----EPASPHLAAELEGVDIDLERIIYKELA--EEYDVVLVEGAGGLMVPIFSGDLNADIAKAL---GAP-VILVASGRL  140 (199)
T ss_dssp             ----SSS-HHHHHHHHT----HHHHHHHHCH--TTTCEEEEEESSSTTSECCTTEEHHHHHHHH---T-E-EEEEEESST
T ss_pred             ----cccCHHHHhhccCCcccHHHHHHHHHh--hcCCEEEEeCCcccCcccccChHHHHHHHHc---CCC-EEEEeCCCC
Confidence                000 00000000011123333 35555  3499999999965531      123444444   566 788888888


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      .+++++...++.++..+.+..|+|+|++..               .+..+.+.+..++++++.||+++.+.
T Consensus       141 g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~---------------~~~~~~l~~~~~i~vlg~iP~~~~L~  196 (199)
T PF13500_consen  141 GTINHTLLTIEALKQRGIRVLGVILNRVPE---------------PENLEALREKSGIPVLGVIPEDPDLS  196 (199)
T ss_dssp             THHHHHHHHHHHHHCTTS-EEEEEEEECTC---------------CHHHHHHHHHHCCEECE---SSTT--
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEEECCCC---------------HHHHHHHHHhCCCCEEEECCCCcccc
Confidence            999999999999999999999999999752               14678888889999999999998875

...

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.23  E-value=3.5e-10  Score=104.15  Aligned_cols=164  Identities=17%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ..+.++.|..|+||||++..||.+|.  ..|++|+++++|...+.....+..-              ...-++.+.... 
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~l--------------a~~~gvp~~~~~-  157 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQL--------------AEKIGVPFYGDP-  157 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHH--------------HHHcCCcEEecC-
Confidence            34445558999999999999999999  8899999999998754322111110              000111111110 


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHH---HHHHhhcCCCcEEEEecCCchhhHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLS---LVQYLKGLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~---~~~~l~~~~ad~vliv~~~~~~s~~  202 (294)
                           .      .......+.+.++.+.  + +|+||||+++....+  .+.   .+..+  ..+|.+++|+++...  .
T Consensus       158 -----~------~~d~~~i~~~al~~~~--~-~DvVIIDTAGr~~~d~~lm~El~~l~~~--~~pdevlLVvda~~g--q  219 (437)
T PRK00771        158 -----D------NKDAVEIAKEGLEKFK--K-ADVIIVDTAGRHALEEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q  219 (437)
T ss_pred             -----C------ccCHHHHHHHHHHHhh--c-CCEEEEECCCcccchHHHHHHHHHHHHH--hcccceeEEEecccc--H
Confidence                 0      0112235667777765  4 799999999766422  111   22222  367889999987664  2


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+....+.+.+ .++..++|+|+++..            .....+-.+....+.|+.
T Consensus       220 ~av~~a~~F~~-~l~i~gvIlTKlD~~------------a~~G~~ls~~~~~~~Pi~  263 (437)
T PRK00771        220 QAKNQAKAFHE-AVGIGGIIITKLDGT------------AKGGGALSAVAETGAPIK  263 (437)
T ss_pred             HHHHHHHHHHh-cCCCCEEEEecccCC------------CcccHHHHHHHHHCcCEE
Confidence            33333333332 245679999999832            122345555666676665

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.22  E-value=6.2e-10  Score=99.55  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=95.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++++++| ..|+||||++..||..+.  ..|++|.++++|++.......+..              .....++.+... 
T Consensus       206 ~~ii~lvG-ptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~--------------yae~lgvpv~~~-  267 (407)
T PRK12726        206 HRIISLIG-QTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQG--------------YADKLDVELIVA-  267 (407)
T ss_pred             CeEEEEEC-CCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHH--------------HhhcCCCCEEec-
Confidence            45556665 569999999999999998  789999999999986432222211              111112211111 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                                     .....+...++.++..++||+|||||++..  ....+..+..+.. ...+.+++|..++ ....+
T Consensus       268 ---------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d  331 (407)
T PRK12726        268 ---------------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSAD  331 (407)
T ss_pred             ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHH
Confidence                           012245666666642234999999999764  3333333333321 2345556666553 33334


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +..+++.++.  ++.-++|+++.|..            .....+-.+....|+|+.
T Consensus       332 ~~~i~~~f~~--l~i~glI~TKLDET------------~~~G~~Lsv~~~tglPIs  373 (407)
T PRK12726        332 VMTILPKLAE--IPIDGFIITKMDET------------TRIGDLYTVMQETNLPVL  373 (407)
T ss_pred             HHHHHHhcCc--CCCCEEEEEcccCC------------CCccHHHHHHHHHCCCEE
Confidence            4455555444  44559999999831            122344455556677666

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.20  E-value=2.7e-10  Score=106.63  Aligned_cols=204  Identities=19%  Similarity=0.181  Sum_probs=107.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC-CCCChhhhcccccc--cccc-ccCCCCcceeccCeEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI-CGPSMPRMMGLLNE--QVHQ-SASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~-~~~~l~~~lg~~~~--~~~~-~~~~~~~~~~~~~l~~~~~  125 (294)
                      |.|+++.++||||++++.|++.|+  ++|++|..+..-. ..++-...-+.+..  ...+ ......+....+.+.+-|.
T Consensus         1 ~~I~GT~t~vGKT~v~~~L~~~l~--~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~   78 (475)
T TIGR00313         1 IMVVGTTSSAGKSTLTAGLCRILA--RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPK   78 (475)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHH--hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcC
Confidence            468899999999999999999999  8999999986631 11110000011111  1111 1111111111112222221


Q ss_pred             ----------ccccCC--CCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-----HHHHHHHhhcCCCc
Q psy11347        126 ----------GFLLNS--PDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-----HLSLVQYLKGLPDI  188 (294)
Q Consensus       126 ----------~~~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad  188 (294)
                                +.....  ..+............+++.++.+.  ..||+||||+++++...     ....+.......++
T Consensus        79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~--~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap  156 (475)
T TIGR00313        79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA--REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD  156 (475)
T ss_pred             CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH--hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC
Confidence                      110000  000000000222345566666665  34999999999865430     01111111114677


Q ss_pred             EEEEecCCchh-hHHHHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347        189 GAIVVTTPQEV-SLLDVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP  266 (294)
Q Consensus       189 ~vliv~~~~~~-s~~~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~  266 (294)
                       +|+|++.... .+..+..++..++.. +..+.|+|+|+++.       ...+   ..+.++.+.+..|+|++++||+++
T Consensus       157 -VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~-------~~~~---~~~~~~~l~e~~gipvLG~ip~~~  225 (475)
T TIGR00313       157 -AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRG-------NVDV---LKSGIEKLEELTGIPVLGVLPYDE  225 (475)
T ss_pred             -EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCC-------cHHH---HHHHHHHHHHhhCCCEEEEecCCC
Confidence             6677776654 334555566665543 35788999999873       1111   123445556667999999999875


Q ss_pred             hh
Q psy11347        267 LV  268 (294)
Q Consensus       267 ~~  268 (294)
                      .+
T Consensus       226 ~l  227 (475)
T TIGR00313       226 NL  227 (475)
T ss_pred             cC
Confidence            43

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.19  E-value=2.1e-10  Score=102.88  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      .|.+.+..+|+||||+|..|.++|+  .+|.+|--+..-|+.             +.-..            .-...|..
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~--~rg~~VqpfKvGPDY-------------IDP~~------------H~~atG~~   54 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALR--RRGLKVQPFKVGPDY-------------IDPGY------------HTAATGRP   54 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHH--hcCCcccccccCCCc-------------cCchh------------hhHhhCCc
Confidence            5788899999999999999999999  899998665554432             11000            00011111


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      ..+.+.+.+     ....++.++.+..  .+.|+.||..--++-+         .+..+...+   .+- ||+|++....
T Consensus        55 srNLD~~mm-----~~~~v~~~f~~~~--~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l---~~P-VvLVid~~~~  123 (451)
T COG1797          55 SRNLDSWMM-----GEEGVRALFARAA--ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL---GAP-VVLVVDASGL  123 (451)
T ss_pred             cCCCchhhc-----CHHHHHHHHHHhc--CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh---CCC-EEEEEeCcch
Confidence            112222211     1236667776665  3388998877643321         122233333   555 7888888776


Q ss_pred             hHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhh-cCCceeeccCCCchh
Q psy11347        200 SLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE-LSVPFLGSVPIDPLV  268 (294)
Q Consensus       200 s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~g~~~l~~Ip~~~~~  268 (294)
                      +-.. ..++.-++..  ++++.|||+||+.            .++..+.+++.++. .|++++|+||.++.+
T Consensus       124 s~S~-AAiv~G~~~fdp~v~iaGVIlNrVg------------serH~~llr~Ale~~~gv~vlG~lpr~~~l  182 (451)
T COG1797         124 SRSV-AAIVKGFKHFDPDVNIAGVILNRVG------------SERHYELLRDALEEYTGVPVLGYLPRDDDL  182 (451)
T ss_pred             hHHH-HHHHHHHHhcCCCCceEEEEEecCC------------CHHHHHHHHHHhhhcCCCcEEEEecCCccc
Confidence            6444 3445555544  5778999999997            34456677777777 689999999999875

>PRK00784 cobyric acid synthase; Provisional

Probab=99.18  E-value=4.8e-10  Score=105.62  Aligned_cols=203  Identities=14%  Similarity=0.127  Sum_probs=109.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhc---cccccc--ccc-ccCCCCcceeccC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM---GLLNEQ--VHQ-SASGWSPVFLEEN  119 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~l---g~~~~~--~~~-~~~~~~~~~~~~~  119 (294)
                      ||+.|.|+++.+|||||+++..|+++|+  ++|++|..+..  .+.......   |.+..+  ..+ ......+....+.
T Consensus         1 m~~~ifItGT~T~vGKT~vt~~L~~~l~--~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P   76 (488)
T PRK00784          1 MAKALMVQGTASDAGKSTLVAGLCRILA--RRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNP   76 (488)
T ss_pred             CCceEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCC
Confidence            5788999999999999999999999999  89999998854  110000000   111110  000 0111111101111


Q ss_pred             eEEEecccccC-----CCC-ccee-----ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----h---HHHHHHH
Q psy11347        120 LSVMSIGFLLN-----SPD-DAVI-----WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-----D---EHLSLVQ  180 (294)
Q Consensus       120 l~~~~~~~~~~-----~~~-~~~~-----~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-----~---~~~~~~~  180 (294)
                      +.+.|......     +.. ..+.     .........+.+.+..+.  ++||++||+..+++.     +   ....++.
T Consensus        77 ~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~--~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak  154 (488)
T PRK00784         77 VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA--AEYDVVVVEGAGSPAEINLRDRDIANMGFAE  154 (488)
T ss_pred             EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH--hcCCEEEEECCCCccccCcccCCchhHHHHH
Confidence            11112111100     000 0000     001123335566666655  349999999884332     1   1223333


Q ss_pred             HhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHh-cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCce
Q psy11347        181 YLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRK-VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       181 ~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~-~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~  258 (294)
                      .   ..+. ||+|+..... ++..+..+++.+.. .+.++.|+|+|+++.      . ...   ..+..+.+.+..++|+
T Consensus       155 ~---l~~P-VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~------~-~~~---~~~~~~~l~~~~gipv  220 (488)
T PRK00784        155 A---ADAP-VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRG------D-ISL---LEPGLDWLEELTGVPV  220 (488)
T ss_pred             H---cCCC-EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCC------C-HHH---HHHHHHHHHHhcCCCE
Confidence            3   3555 6777766554 56666666666653 357899999999873      1 111   1223344556679999


Q ss_pred             eeccCCCchh
Q psy11347        259 LGSVPIDPLV  268 (294)
Q Consensus       259 l~~Ip~~~~~  268 (294)
                      +++||+++.+
T Consensus       221 LG~iP~~~~L  230 (488)
T PRK00784        221 LGVLPYLDDL  230 (488)
T ss_pred             EEEcCCCcCC
Confidence            9999998765

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=99.13  E-value=8.1e-10  Score=108.01  Aligned_cols=178  Identities=18%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      |++.|.+.++..|+|||+++..|+.+|.  .+|.+|.++--..+.+       .......            .   .+..
T Consensus         1 m~k~l~I~~T~t~~GKT~vslgL~~~L~--~~G~~Vg~fKPi~~~p-------~~~~~~~------------~---~~~~   56 (684)
T PRK05632          1 MSRSIYLAPTGTGVGLTSVSLGLMRALE--RKGVKVGFFKPIAQPP-------LTMSEVE------------A---LLAS   56 (684)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEeCCcccCC-------CCHHHHH------------H---HHhc
Confidence            5778999999999999999999999999  8999999987433220       0000000            0   0000


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH------HHHHHHhhcCCCcEEEEecCCchh
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH------LSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~------~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      +      .      .....+.+.+.++.+.  ++||+||||++.+.....      ..++..+   .+ -+|+|++++..
T Consensus        57 ~------~------~~~~~~~I~~~~~~l~--~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L---~~-pVILV~~~~~~  118 (684)
T PRK05632         57 G------Q------LDELLEEIVARYHALA--KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL---GA-EVVLVSSGGND  118 (684)
T ss_pred             c------C------ChHHHHHHHHHHHHhc--cCCCEEEEeCcCCCCcCcccCchHHHHHHHh---CC-CEEEEECCCCC
Confidence            0      0      0111224455555555  349999999996543211      1222222   34 48888888877


Q ss_pred             hHHHH----HHHHHHHH-hcCCCeeEEEeccccccCCCCCC-CCccCCCC----------chhHHHHHhhcCCceeeccC
Q psy11347        200 SLLDV----RKEIDFCR-KVNIPIIGVVENMATFVCPKCTK-PSEIFPKD----------SGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       200 s~~~~----~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~-~~~i~~~~----------~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      ++.++    ....+.+. ..+.+..|+|+|+++..    +. ...+....          .......++..+++++|+||
T Consensus       119 si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP  194 (684)
T PRK05632        119 TPEELAERIELAASSFGGAKNANILGVIINKLNAP----VDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVP  194 (684)
T ss_pred             ChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC----HHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEcc
Confidence            75443    33444444 45688999999994310    01 00000000          00112334567899999999


Q ss_pred             CCchhh
Q psy11347        264 IDPLVT  269 (294)
Q Consensus       264 ~~~~~~  269 (294)
                      +++.+.
T Consensus       195 ~d~~L~  200 (684)
T PRK05632        195 WSPDLI  200 (684)
T ss_pred             CccccC
Confidence            998876

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.12  E-value=2.3e-09  Score=99.76  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++|+|+ |.+|+||||++.+||..+.....+++|.++++|.+..+....+...              ...-++.+... 
T Consensus       350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y--------------a~iLgv~v~~a-  413 (559)
T PRK12727        350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY--------------GRQLGIAVHEA-  413 (559)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh--------------hcccCceeEec-
Confidence            5667776 6789999999999999887112257999999998653221111100              00011111110 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh--cCCCcEEEEecCCchhhHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK--GLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~--~~~ad~vliv~~~~~~s~~  202 (294)
                                     .....+...++.+.  + ||+||||+++....+.  ...+..+.  ....+.+|++.......+ 
T Consensus       414 ---------------~d~~~L~~aL~~l~--~-~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl-  474 (559)
T PRK12727        414 ---------------DSAESLLDLLERLR--D-YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL-  474 (559)
T ss_pred             ---------------CcHHHHHHHHHHhc--c-CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH-
Confidence                           11125566777664  4 9999999997543221  11111111  124555566665544444 


Q ss_pred             HHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                        ..+++.+...  ...++|+|+++
T Consensus       475 --~eii~~f~~~--~~~gvILTKlD  495 (559)
T PRK12727        475 --DEVVRRFAHA--KPQGVVLTKLD  495 (559)
T ss_pred             --HHHHHHHHhh--CCeEEEEecCc
Confidence              4455555543  45799999998

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.10  E-value=2.1e-09  Score=92.20  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             CCCCCCCcChHHHHhhhccC--ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc
Q psy11347         27 GAAKSVDPGIELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV  104 (294)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~--~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~  104 (294)
                      ..|++.....+.|+......  ..+|+|+ |-+|+||||+.-.|...|.  .+|+||.++-.||+.+-.       ...+
T Consensus        29 ~~~~h~~~a~~ll~~l~p~tG~a~viGIT-G~PGaGKSTli~~L~~~l~--~~G~rVaVlAVDPSSp~T-------GGsi   98 (323)
T COG1703          29 RRPDHRALARELLRALYPRTGNAHVIGIT-GVPGAGKSTLIEALGRELR--ERGHRVAVLAVDPSSPFT-------GGSI   98 (323)
T ss_pred             CCchhhhHHHHHHHHHhhcCCCCcEEEec-CCCCCchHHHHHHHHHHHH--HCCcEEEEEEECCCCCCC-------Cccc
Confidence            33444433445555444333  4567776 7789999999999999999  999999999999975311       0111


Q ss_pred             ccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhc
Q psy11347        105 HQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKG  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~  184 (294)
                      ......+..+...+|+.+-|....-.         ........++.+..+.... ||+|||.|-+ .+.......     
T Consensus        99 LGDRiRM~~~~~~~~vFiRs~~srG~---------lGGlS~at~~~i~~ldAaG-~DvIIVETVG-vGQsev~I~-----  162 (323)
T COG1703          99 LGDRIRMQRLAVDPGVFIRSSPSRGT---------LGGLSRATREAIKLLDAAG-YDVIIVETVG-VGQSEVDIA-----  162 (323)
T ss_pred             cccHhhHHhhccCCCeEEeecCCCcc---------chhhhHHHHHHHHHHHhcC-CCEEEEEecC-CCcchhHHh-----
Confidence            12223344444457777765432110         1112224444444444223 9999999994 332223344     


Q ss_pred             CCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        185 LPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       185 ~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ..+|.+++++.|.. .+++..+.-+-.+..      -+|+|+.|
T Consensus       163 ~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------i~vINKaD  200 (323)
T COG1703         163 NMADTFLVVMIPGAGDDLQGIKAGIMEIAD------IIVINKAD  200 (323)
T ss_pred             hhcceEEEEecCCCCcHHHHHHhhhhhhhh------eeeEeccC
Confidence            57899999998877 666666665555544      48899987

>PRK14974 cell division protein FtsY; Provisional

Probab=99.08  E-value=4.9e-09  Score=93.54  Aligned_cols=168  Identities=17%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ..+.++.|..|+||||++..||.+|.  ..|++|+++++|.........+..              ....-++.+++...
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~~a~eqL~~--------------~a~~lgv~v~~~~~  203 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRAGAIEQLEE--------------HAERLGVKVIKHKY  203 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcHHHHHHHHH--------------HHHHcCCceecccC
Confidence            34555557999999999999999999  889999999999764322111110              00111222222110


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~  204 (294)
                                  .......+.+.++.....+ ||+||||+++...  ...+..+..+.. ...|.+++|.+... . +++
T Consensus       204 ------------g~dp~~v~~~ai~~~~~~~-~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g-~d~  268 (336)
T PRK14974        204 ------------GADPAAVAYDAIEHAKARG-IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-G-NDA  268 (336)
T ss_pred             ------------CCCHHHHHHHHHHHHHhCC-CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-c-hhH
Confidence                        0011123445555444234 9999999997663  333333332211 25677888887644 2 233


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.+.+ ....-++|+|++|..           . ....+-.+....+.|+.
T Consensus       269 ~~~a~~f~~-~~~~~giIlTKlD~~-----------~-~~G~~ls~~~~~~~Pi~  310 (336)
T PRK14974        269 VEQAREFNE-AVGIDGVILTKVDAD-----------A-KGGAALSIAYVIGKPIL  310 (336)
T ss_pred             HHHHHHHHh-cCCCCEEEEeeecCC-----------C-CccHHHHHHHHHCcCEE
Confidence            333333332 133459999999831           1 12233444445677776

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.06  E-value=5.1e-09  Score=92.75  Aligned_cols=149  Identities=19%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      +.+|.|+ |++|+||||++..|+..+.  ..|++|.+++.|++.+-.. .+++.        ...+......++..+.+.
T Consensus        34 ~~~i~i~-G~~G~GKttl~~~l~~~~~--~~~~~v~~i~~D~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  102 (300)
T TIGR00750        34 AHRVGIT-GTPGAGKSTLLEALGMELR--RRGLKVAVIAVDPSSPFTGGSILGD--------RTRMQRLATDPGAFIRSM  102 (300)
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCCcchhhhccc--------chhhhhcccCCCceeeec
Confidence            5566555 9999999999999999999  8899999999998753211 11111        111222222233333332


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV  204 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~  204 (294)
                      ...-     .+    ........++++.+... +||+||+|+++ .........     ..+|.++++..+.. ..+...
T Consensus       103 ~~~~-----~~----~~~~~~~~~~~~~l~~~-g~D~viidT~G-~~~~e~~i~-----~~aD~i~vv~~~~~~~el~~~  166 (300)
T TIGR00750       103 PTRG-----HL----GGLSQATRELILLLDAA-GYDVIIVETVG-VGQSEVDIA-----NMADTFVVVTIPGTGDDLQGI  166 (300)
T ss_pred             Cccc-----cc----cchhHHHHHHHHHHHhC-CCCEEEEeCCC-CchhhhHHH-----HhhceEEEEecCCccHHHHHH
Confidence            2110     00    00112445555555433 49999999995 443333333     46787887765442 333333


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccc
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .   ..+.  +.+ ..+|+|+.+.
T Consensus       167 ~---~~l~--~~~-~ivv~NK~Dl  184 (300)
T TIGR00750       167 K---AGLM--EIA-DIYVVNKADG  184 (300)
T ss_pred             H---HHHh--hhc-cEEEEEcccc
Confidence            3   2222  222 3689999984

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.04  E-value=9.4e-09  Score=93.41  Aligned_cols=171  Identities=18%  Similarity=0.186  Sum_probs=94.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHH-hhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVL-AKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~l-a~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+.++.|.+|+||||++..||..+ .  ..|++|+++++|.+.......+....              ...++.+.+. 
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~eQLk~yA--------------e~lgvp~~~~-  285 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIEQLKRYA--------------DTMGMPFYPV-  285 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHHHHHHHH--------------HhcCCCeeeh-
Confidence            4456666999999999999999865 4  67999999999997643222111100              0011111110 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhcC----CCcEEEEecCCchhh
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKGL----PDIGAIVVTTPQEVS  200 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~~----~ad~vliv~~~~~~s  200 (294)
                                        ..+..+.+.+.. ++||+||||+++...  ...+..+..+...    ....+++|+.++.. 
T Consensus       286 ------------------~~~~~l~~~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-  345 (432)
T PRK12724        286 ------------------KDIKKFKETLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS-  345 (432)
T ss_pred             ------------------HHHHHHHHHHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-
Confidence                              012233333332 349999999986442  2233333322211    12246666655433 


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchhh
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLVT  269 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~~  269 (294)
                      ..++..+++.++..++  -++|+.+.|..       .     ....+-.+....++|+.  +   .||+|-..+
T Consensus       346 ~~~~~~~~~~f~~~~~--~glIlTKLDEt-------~-----~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A  405 (432)
T PRK12724        346 YHHTLTVLKAYESLNY--RRILLTKLDEA-------D-----FLGSFLELADTYSKSFTYLSVGQEVPFDILNA  405 (432)
T ss_pred             HHHHHHHHHHhcCCCC--CEEEEEcccCC-------C-----CccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence            3344555555555554  49999999831       1     12234455556676665  3   488885543

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=99.03  E-value=1.8e-09  Score=94.81  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             CCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        186 PDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       186 ~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ....+++|+.++..++..+.++++.++..+.+..++|+|++.+
T Consensus       188 ~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~  230 (284)
T TIGR00345       188 ERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP  230 (284)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcC
Confidence            3466899999999999999999999999999999999999875

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=99.02  E-value=1.9e-08  Score=93.84  Aligned_cols=170  Identities=17%  Similarity=0.179  Sum_probs=99.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL  129 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (294)
                      |.|.++.+|+||||++..|+++|+  ++|++|..+..-+..        .++... ........    .+++.       
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~--~~G~~V~~fK~g~d~--------~D~~~~-~~~~g~~~----~~ld~-------   59 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALS--RRKLRVQPFKVGPDY--------IDPMFH-TQATGRPS----RNLDS-------   59 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH--HCCCceeEEccCCCC--------CCHHHH-HHHhCCch----hhCCc-------
Confidence            788999999999999999999999  899999999753211        111100 00000000    11110       


Q ss_pred             CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                           ..     .....+.+.+..+.  .++|++||+...++.+         ....++..+   .+. ||+|+.... .
T Consensus        60 -----~~-----~~~~~i~~~~~~~~--~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l---~~p-VILV~~~~~-~  122 (449)
T TIGR00379        60 -----FF-----MSEAQIQECFHRHS--KGTDYSIIEGVRGLYDGISAITDYGSTASVAKAL---DAP-IVLVMNCQR-L  122 (449)
T ss_pred             -----cc-----CCHHHHHHHHHHhc--ccCCEEEEecCCccccCCCCCCCCccHHHHHHHh---CCC-EEEEECCch-H
Confidence                 00     12336777777765  3499999999855421         123333333   555 677776552 1


Q ss_pred             HHHHHHHHHHH--HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347        201 LLDVRKEIDFC--RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT  269 (294)
Q Consensus       201 ~~~~~~~l~~l--~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~  269 (294)
                      ...+..++..+  ...++++.|+|+|+++.      . .  +  .....+.+.+..+++++++||+++.+.
T Consensus       123 ~~t~~al~~~~~~~~~~i~i~GvIlN~v~~------~-~--~--~~~~~~~i~~~~gipvLG~IP~~~~l~  182 (449)
T TIGR00379       123 SRSAAAIVLGYRSFDPGVKLKGVILNRVGS------E-R--H--LEKLKIAVEPLRGIPILGVIPRQQDLK  182 (449)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEEECCCC------H-H--H--HHHHHHHHHHhCCCCEEEEecCccccC
Confidence            22233332222  23478899999999862      1 1  1  111233344446999999999998774

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.01  E-value=9.4e-09  Score=91.50  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=87.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      ..+..+.|..|+||||++..|+..+.  ..|++|.++..|++.+... .++|-        ......+...++..+.+.+
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~~~l~--~~g~~v~vi~~Dp~s~~~~gallgd--------~~r~~~~~~~~~~~~r~~~  125 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALGMHLI--EQGHKVAVLAVDPSSTRTGGSILGD--------KTRMERLSRHPNAFIRPSP  125 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeCCCccccchhhhch--------HhHHHhhcCCCCeEEEecC
Confidence            34444557799999999999999999  8899999999999753211 11110        0011111122333333221


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC-CchhhHHHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT-PQEVSLLDVR  205 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~-~~~~s~~~~~  205 (294)
                      .     ...    .......+.+.++.+.... ||+||||+++..... ....     ..+|.+++|+. +...++....
T Consensus       126 ~-----~~~----l~~~a~~~~~~~~~~~~~g-~d~viieT~Gv~qs~-~~i~-----~~aD~vlvv~~p~~gd~iq~~k  189 (332)
T PRK09435        126 S-----SGT----LGGVARKTRETMLLCEAAG-YDVILVETVGVGQSE-TAVA-----GMVDFFLLLQLPGAGDELQGIK  189 (332)
T ss_pred             C-----ccc----ccchHHHHHHHHHHHhccC-CCEEEEECCCCccch-hHHH-----HhCCEEEEEecCCchHHHHHHH
Confidence            1     000    0111235566666665334 999999999655332 2222     47999998886 5556776655


Q ss_pred             H-HHHHHHhcCCCeeEEEeccccc
Q psy11347        206 K-EIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       206 ~-~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      . .++...       .+|+||+|.
T Consensus       190 ~gi~E~aD-------IiVVNKaDl  206 (332)
T PRK09435        190 KGIMELAD-------LIVINKADG  206 (332)
T ss_pred             hhhhhhhh-------eEEeehhcc
Confidence            4 222221       589999983

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.01  E-value=4.2e-09  Score=97.92  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE--E
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV--M  123 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~--~  123 (294)
                      .++.+.|.++.+|+||||+|..|+.+|+  .+   |..+-+.+..             +...          +.+..  .
T Consensus       237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~--~~---v~~fK~GpD~-------------id~~----------p~~~~~~~  288 (476)
T PRK06278        237 KPKGIILLATGSESGKTFLTTSIAGKLR--GK---VFVAKIGPDV-------------RDIV----------PSLYLLRE  288 (476)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHH--hC---eEEEcCCCCh-------------hhcC----------Ccceeccc
Confidence            3678999999999999999999999999  54   7666643211             0000          00000  0


Q ss_pred             ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH---------HHHHHHHhhcCCCcEEEEec
Q psy11347        124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE---------HLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~---------~~~~~~~l~~~~ad~vliv~  194 (294)
                      |.........+...+  .    ...+.++.+... ++|++||+...++.+.         ...++..+   .+. ||+|+
T Consensus       289 ~~sp~~a~n~~~d~~--~----~~~~~~~~~~~~-~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l---~~P-VILV~  357 (476)
T PRK06278        289 KMTKYNSIKIGDRGW--S----DVEEFLEFVKNS-DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL---GFP-VYIVS  357 (476)
T ss_pred             ccCChHHHhhcCCcc--c----CHHHHHHHHHhc-CCCEEEEECCCCcccccCCCCccccHHHHHHHh---CCC-EEEEE
Confidence            111000000000000  0    112223333222 3899999998665332         12333333   455 88899


Q ss_pred             CCchhhHHHHHHH----HHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347        195 TPQEVSLLDVRKE----IDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP  263 (294)
Q Consensus       195 ~~~~~s~~~~~~~----l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip  263 (294)
                      +....+++.+...    .+.++..++++.|+|+|++..            .++.+.++++++..|+|++|++|
T Consensus       358 ~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~------------~~~~~~~~~~le~~gvpVLG~~~  418 (476)
T PRK06278        358 SCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYN------------MEIFEKVKKIAENSNINLIGVGK  418 (476)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCc------------HHHHHHHHHHHHhcCCCEEEecc
Confidence            8888886555543    455666788999999999872            11345667888889999999944

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.01  E-value=1.3e-08  Score=84.38  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=94.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ++|+++ |..||||||.++-||.++.  ..+++|.++-+|.........+..-              -..-++.+.....
T Consensus         2 ~vi~lv-GptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~--------------a~~l~vp~~~~~~   64 (196)
T PF00448_consen    2 KVIALV-GPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTY--------------AEILGVPFYVART   64 (196)
T ss_dssp             EEEEEE-ESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHH--------------HHHHTEEEEESST
T ss_pred             EEEEEE-CCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHH--------------HHHhccccchhhc
Confidence            445555 7889999999999999999  6699999999998653322221110              0112333332210


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~  204 (294)
                                  .......+++.++....++ ||+||||+++....+  .+.-+..+.. ...+.+++|...+... ...
T Consensus        65 ------------~~~~~~~~~~~l~~~~~~~-~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~  130 (196)
T PF00448_consen   65 ------------ESDPAEIAREALEKFRKKG-YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDL  130 (196)
T ss_dssp             ------------TSCHHHHHHHHHHHHHHTT-SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHH
T ss_pred             ------------chhhHHHHHHHHHHHhhcC-CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHH
Confidence                        1112235666777665334 999999999654321  1112211111 2456677777666543 344


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+....+..++.  ++|+.+.|.           .. ....+-.+....+.|+.
T Consensus       131 ~~~~~~~~~~~~~--~lIlTKlDe-----------t~-~~G~~l~~~~~~~~Pi~  171 (196)
T PF00448_consen  131 EQALAFYEAFGID--GLILTKLDE-----------TA-RLGALLSLAYESGLPIS  171 (196)
T ss_dssp             HHHHHHHHHSSTC--EEEEESTTS-----------SS-TTHHHHHHHHHHTSEEE
T ss_pred             HHHHHHhhcccCc--eEEEEeecC-----------CC-CcccceeHHHHhCCCeE
Confidence            4555555555555  899999983           11 22334455556777766

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.98  E-value=1.2e-08  Score=94.28  Aligned_cols=164  Identities=17%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++++|+ |.+|+||||++..||..++....|++|+++|+|++.......+..           |..   .-++.+....
T Consensus       221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~-----------~a~---~~~vp~~~~~  285 (424)
T PRK05703        221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKT-----------YAK---IMGIPVEVVY  285 (424)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHH-----------HHH---HhCCceEccC
Confidence            3456666 679999999999999987511468999999999875221111100           000   0111111110


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhhc-C-CCcEEEEecCCchhhHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLKG-L-PDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~~-~-~ad~vliv~~~~~~s~~  202 (294)
                                      ....+...+..+.  + ||+||||+++....  .....+..+.. . .-..+++|+..+ ....
T Consensus       286 ----------------~~~~l~~~l~~~~--~-~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~  345 (424)
T PRK05703        286 ----------------DPKELAKALEQLR--D-CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYE  345 (424)
T ss_pred             ----------------CHHhHHHHHHHhC--C-CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHH
Confidence                            0114455566554  4 99999999965432  22333333322 1 112334444332 2334


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+..+++.++..++  .++|+++++..       ..     ...+-.+....++|+.
T Consensus       346 ~l~~~~~~f~~~~~--~~vI~TKlDet-------~~-----~G~i~~~~~~~~lPv~  388 (424)
T PRK05703        346 DLKDIYKHFSRLPL--DGLIFTKLDET-------SS-----LGSILSLLIESGLPIS  388 (424)
T ss_pred             HHHHHHHHhCCCCC--CEEEEeccccc-------cc-----ccHHHHHHHHHCCCEE
Confidence            55555556655554  58999999832       11     2234455556677776

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.94  E-value=1.8e-08  Score=90.66  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+.+....|--|+||||.|.-||.+|.  ++|++|+++-+|.+.+..-..|..              +-..-++.+.+.+
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~kvllVaaD~~RpAA~eQL~~--------------La~q~~v~~f~~~  162 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKKVLLVAADTYRPAAIEQLKQ--------------LAEQVGVPFFGSG  162 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHH--HcCCceEEEecccCChHHHHHHHH--------------HHHHcCCceecCC
Confidence            345555557788999999999999999  899999999999987543222211              1111233333321


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                      .            .....+..++.++..+... ||+|||||.+.+.  ...+.-+..+.. ...|.+++|++....  ++
T Consensus       163 ~------------~~~Pv~Iak~al~~ak~~~-~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--Qd  227 (451)
T COG0541         163 T------------EKDPVEIAKAALEKAKEEG-YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QD  227 (451)
T ss_pred             C------------CCCHHHHHHHHHHHHHHcC-CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc--hH
Confidence            0            1112236788888888544 9999999997653  322222222221 467889999976431  22


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +...-+.+.+ .+.+-|+|+++.|.
T Consensus       228 A~~~A~aF~e-~l~itGvIlTKlDG  251 (451)
T COG0541         228 AVNTAKAFNE-ALGITGVILTKLDG  251 (451)
T ss_pred             HHHHHHHHhh-hcCCceEEEEcccC
Confidence            2222233321 23456999999985

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.94  E-value=4.4e-08  Score=89.03  Aligned_cols=170  Identities=15%  Similarity=0.210  Sum_probs=94.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhc--CCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKS--NESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~--~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+.++.|++|+||||+++.||..+...  ..|++|+++++|.........+..           |.+.   -++.+... 
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~-----------~a~~---lgvpv~~~-  239 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT-----------YGDI---MGIPVKAI-  239 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH-----------Hhhc---CCcceEee-
Confidence            455556888999999999999988711  247899999999865332222211           0000   01111100 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc-CCCc-EEEEecCCchhhHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG-LPDI-GAIVVTTPQEVSLL  202 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~-~~ad-~vliv~~~~~~s~~  202 (294)
                                     .....+...+..+.  + ||+||||+++......  +.-+..+.. ...+ .+++|..++.. ..
T Consensus       240 ---------------~~~~~l~~~L~~~~--~-~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~  300 (388)
T PRK12723        240 ---------------ESFKDLKEEITQSK--D-FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TS  300 (388)
T ss_pred             ---------------CcHHHHHHHHHHhC--C-CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HH
Confidence                           01124555555553  4 9999999997654222  222222222 1223 57777766554 33


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCc
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDP  266 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~  266 (294)
                      ++..++..+...+  .-++|+++.|..       .     ....+-.+....++|+.  +   .||.|-
T Consensus       301 ~~~~~~~~~~~~~--~~~~I~TKlDet-------~-----~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl  355 (388)
T PRK12723        301 DVKEIFHQFSPFS--YKTVIFTKLDET-------T-----CVGNLISLIYEMRKEVSYVTDGQIVPHNI  355 (388)
T ss_pred             HHHHHHHHhcCCC--CCEEEEEeccCC-------C-----cchHHHHHHHHHCCCEEEEeCCCCChhhh
Confidence            4445555555444  459999999831       1     12334455556666665  2   366653

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.93  E-value=1.9e-09  Score=91.16  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEe
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMS  124 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (294)
                      ...+|+|+ |.+|+||||+.-.|+..+.  ..|++|.++-.||..+-.. .+|        .....+..+...+++++-+
T Consensus        28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~--~~g~~VaVlAVDPSSp~tGGAlL--------GDRiRM~~~~~d~~vfIRS   96 (266)
T PF03308_consen   28 RAHVIGIT-GPPGAGKSTLIDALIRELR--ERGKRVAVLAVDPSSPFTGGALL--------GDRIRMQELSRDPGVFIRS   96 (266)
T ss_dssp             -SEEEEEE-E-TTSSHHHHHHHHHHHHH--HTT--EEEEEE-GGGGCC---SS----------GGGCHHHHTSTTEEEEE
T ss_pred             CceEEEee-CCCCCcHHHHHHHHHHHHh--hcCCceEEEEECCCCCCCCCccc--------ccHHHhcCcCCCCCEEEee
Confidence            35666665 7889999999999999999  8999999999999753211 112        2222333334457777765


Q ss_pred             cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHH
Q psy11347        125 IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLD  203 (294)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~  203 (294)
                      ....-     .    .........+.+.-+.... ||+|||.|-+ .+.......     ..+|.++++..|.. .+++.
T Consensus        97 ~atRG-----~----lGGls~~t~~~v~ll~aaG-~D~IiiETVG-vGQsE~~I~-----~~aD~~v~v~~Pg~GD~iQ~  160 (266)
T PF03308_consen   97 MATRG-----S----LGGLSRATRDAVRLLDAAG-FDVIIIETVG-VGQSEVDIA-----DMADTVVLVLVPGLGDEIQA  160 (266)
T ss_dssp             E---S-----S----HHHHHHHHHHHHHHHHHTT--SEEEEEEES-SSTHHHHHH-----TTSSEEEEEEESSTCCCCCT
T ss_pred             cCcCC-----C----CCCccHhHHHHHHHHHHcC-CCEEEEeCCC-CCccHHHHH-----HhcCeEEEEecCCCccHHHH
Confidence            43110     0    0111223344444443223 9999999994 443344454     68999999998877 66666


Q ss_pred             HHHHHHHHHhcCCCeeEEEecccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      .+.-+-.+..      .+|+|+.|
T Consensus       161 ~KaGimEiaD------i~vVNKaD  178 (266)
T PF03308_consen  161 IKAGIMEIAD------IFVVNKAD  178 (266)
T ss_dssp             B-TTHHHH-S------EEEEE--S
T ss_pred             Hhhhhhhhcc------EEEEeCCC
Confidence            6655555543      58999987

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.90  E-value=8.8e-08  Score=83.00  Aligned_cols=173  Identities=18%  Similarity=0.189  Sum_probs=99.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ..++++ |++|+||||+...|+..+.  ..+.+|.++++|.+.......+.              ......++.+...  
T Consensus        76 ~~i~~~-G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~--------------~~~~~~~~~~~~~--  136 (270)
T PRK06731         76 QTIALI-GPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQ--------------DYVKTIGFEVIAV--  136 (270)
T ss_pred             CEEEEE-CCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHH--------------HHhhhcCceEEec--
Confidence            455555 7799999999999999999  78999999999976422111110              0000112222111  


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhh-cCCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~~  204 (294)
                                    .....+.+.++.++...+||+||||+++...  ...+.-+..+. ....+.+++|..++... +++
T Consensus       137 --------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~  201 (270)
T PRK06731        137 --------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDM  201 (270)
T ss_pred             --------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHH
Confidence                          0112455666666432349999999997763  33333232221 12456677777654322 344


Q ss_pred             HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV  268 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~  268 (294)
                      ...++.+..  ...-++|+.+.|..       .     ....+-.+....+.|+.  +   .+|+|-..
T Consensus       202 ~~~~~~f~~--~~~~~~I~TKlDet-------~-----~~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~  256 (270)
T PRK06731        202 IEIITNFKD--IHIDGIVFTKFDET-------A-----SSGELLKIPAVSSAPIVLMTDGQDVKKNIHI  256 (270)
T ss_pred             HHHHHHhCC--CCCCEEEEEeecCC-------C-----CccHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence            445555655  45569999999831       1     12234444455666665  2   47766444

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.90  E-value=4e-08  Score=90.47  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=101.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      |+.+.|.+...|+||||++..|+.+|.  .+|.+|-.+-..+..-+...+         ........    .+++.    
T Consensus         1 m~~~~i~~~~s~~GKT~vt~gl~~~l~--~~g~~v~~~K~Gpd~iD~~~~---------~~~~g~~~----~nld~----   61 (433)
T PRK13896          1 MKGFVLGGTSSGVGKTVATLATIRALE--DAGYAVQPAKAGPDFIDPSHH---------EAVAGRPS----RTLDP----   61 (433)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHH--HCCCeeEEEeeCCCCCCHHHH---------HHHhCCCc----ccCCh----
Confidence            457999999999999999999999999  899999888764432111000         00000000    12210    


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-HHHHHHhhcCCCcEEEEecCCchhhHHHH-
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-LSLVQYLKGLPDIGAIVVTTPQEVSLLDV-  204 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~~~~~~l~~~~ad~vliv~~~~~~s~~~~-  204 (294)
                       ++.         .   .+.++..+..   .. +|++||+...++.+.. ..+...+...... ||+|++....+...+ 
T Consensus        62 -~~~---------~---~~~i~~~~~~---~~-~d~~vIEG~gGl~dg~~~s~adla~~l~~P-viLVv~~~~g~~s~aa  123 (433)
T PRK13896         62 -WLS---------G---EDGMRRNYYR---GE-GDICVVEGVMGLYDGDVSSTAMVAEALDLP-VVLVVDAKAGMESVAA  123 (433)
T ss_pred             -hhC---------C---HHHHHHHHHh---hc-CCEEEEECCCccccCCCCCHHHHHHHHCCC-EEEEEcCcccHHHHHH
Confidence             000         0   1234443332   23 8999999987663321 1122222222455 788888777754444 


Q ss_pred             -HHHHHHHHh---cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        205 -RKEIDFCRK---VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       205 -~~~l~~l~~---~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                       ...+..+..   .++++.|+|+|++.+            .++.+.+++..+. ++++++.||.++.+
T Consensus       124 ~l~g~~~~~~~~~~~~~i~GvIlN~~~~------------~~h~~~l~~~~~~-~i~vlG~lP~~~~~  178 (433)
T PRK13896        124 TALGFRAYADRIGRDIDVAGVIAQRAHG------------GRHADGIRDALPD-ELTYFGRIPPRDDL  178 (433)
T ss_pred             HHHHHHHHHHhccCCCcEEEEEEECCCc------------HHHHHHHHHhhhh-cCceeEecccCCCC
Confidence             333333333   478999999999862            1112333444444 79999999998776

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=98.83  E-value=3.1e-08  Score=91.99  Aligned_cols=85  Identities=24%  Similarity=0.364  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee----------eccCCCchh
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL----------GSVPIDPLV  268 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l----------~~Ip~~~~~  268 (294)
                      ..+.++.+.++.+++.+++ ..|.+|+++..     ...+     .+.+++++++.|+++.          |-+|.++.+
T Consensus       356 sGl~NL~RHIenvr~FGvP-vVVAINKFd~D-----Te~E-----i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aV  424 (557)
T PRK13505        356 KGFANLERHIENIRKFGVP-VVVAINKFVTD-----TDAE-----IAALKELCEELGVEVALSEVWAKGGEGGVELAEKV  424 (557)
T ss_pred             HHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC-----CHHH-----HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHH
Confidence            3557788899999999999 45899999841     1112     3467889999999999          899999999


Q ss_pred             hhhccCCcc----cccCCCHHHHHHHHhhC
Q psy11347        269 TRHCDEGTS----AIDTPSACVDAIQQIVQ  294 (294)
Q Consensus       269 ~~a~~~g~~----v~~~~s~~~~~~~~la~  294 (294)
                      .+++.++.+    ++..+.++.+.++.+|+
T Consensus       425 veA~~~~~s~f~~lY~~d~sl~eKIe~IAk  454 (557)
T PRK13505        425 VELIEEGESNFKPLYDDEDSLEEKIEKIAT  454 (557)
T ss_pred             HHHHhcCCCCCceecCCCCcHHHHHHHHHH
Confidence            988887654    33378888888888874

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.81  E-value=1.7e-07  Score=91.15  Aligned_cols=170  Identities=17%  Similarity=0.147  Sum_probs=97.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      ++|+| -|.+|+||||++..||..+.. ..| ++|.++++|.........+...              ....++.+... 
T Consensus       186 ~Vi~l-VGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~--------------a~~~gvpv~~~-  248 (767)
T PRK14723        186 GVLAL-VGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIY--------------GRILGVPVHAV-  248 (767)
T ss_pred             eEEEE-ECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHH--------------HHhCCCCcccc-
Confidence            44555 588999999999999998851 455 6999999997653322111110              00011111000 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                                     .....+.+.++.++  + ||+|||||++-.  .......+..+.. ...+.+++|++.+. ..+.
T Consensus       249 ---------------~~~~~l~~al~~~~--~-~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~  309 (767)
T PRK14723        249 ---------------KDAADLRFALAALG--D-KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDT  309 (767)
T ss_pred             ---------------CCHHHHHHHHHHhc--C-CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHH
Confidence                           01225677777765  5 899999999743  2223333333321 23556788876653 3445


Q ss_pred             HHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCC
Q psy11347        204 VRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPID  265 (294)
Q Consensus       204 ~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~  265 (294)
                      +..+++.++.. +.+.-++|++|.|.       ..     ....+-.+....++|+.  +   .||+|
T Consensus       310 l~~i~~~f~~~~~~~i~glIlTKLDE-------t~-----~~G~iL~i~~~~~lPI~yit~GQ~VPdD  365 (767)
T PRK14723        310 LNEVVHAYRHGAGEDVDGCIITKLDE-------AT-----HLGPALDTVIRHRLPVHYVSTGQKVPEH  365 (767)
T ss_pred             HHHHHHHHhhcccCCCCEEEEeccCC-------CC-----CccHHHHHHHHHCCCeEEEecCCCChhh
Confidence            55666666544 34566999999983       11     12234455556666655  2   46655

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.73  E-value=5.3e-08  Score=84.70  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccc-ccCCCCcce-eccCeEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ-SASGWSPVF-LEENLSVMS  124 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~-~~~~~~~~~-~~~~l~~~~  124 (294)
                      |++|.|++.| |+||||++.+|+..|+  .+| +|.+|+.|.....     .....+... ...+..... ..+.-.++ 
T Consensus         1 M~~i~i~G~~-gSGKTTLi~~Li~~L~--~~G-~V~~IKhd~h~~~-----~~~g~Ds~~~~~aGa~~v~~~s~~~~~~-   70 (274)
T PRK14493          1 MKVLSIVGYK-ATGKTTLVERLVDRLS--GRG-RVGTVKHMDTERL-----NPDGTDTGRHFDAGADVVYGLTDGEWVA-   70 (274)
T ss_pred             CcEEEEECCC-CCCHHHHHHHHHHHHH--hCC-CEEEEEEcCCCcC-----CCCCCCcHHHHHCCCcEEEEecCCeEEE-
Confidence            5678888775 9999999999999999  889 8999999985310     000000000 000000000 00110110 


Q ss_pred             cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc-EEEEecCCchhhH
Q psy11347        125 IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI-GAIVVTTPQEVSL  201 (294)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad-~vliv~~~~~~s~  201 (294)
                                   ...   ...+.+++..+. .+ ||+||+|+.....-+-+... .+  ..+| .++++..++...+
T Consensus        71 -------------~~~---~~~l~~~l~~l~-~~-~D~vlVEG~k~~~~pki~v~-~~--~~~~~~~l~p~~~s~~d~  127 (274)
T PRK14493         71 -------------SGR---DRSLDDALDDLA-PG-MDYAVVEGFKDSRLPKVVLG-DM--DADSDVVARAPTAADLDT  127 (274)
T ss_pred             -------------Eec---CCCHHHHHHhhC-cC-CCEEEEECCCCCCCCEEEEE-ec--ccCCcEEEecCCCCccCH
Confidence                         000   114556666665 23 99999999976542111111 11  3566 7889998888773

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.55  E-value=2.9e-06  Score=76.69  Aligned_cols=173  Identities=19%  Similarity=0.215  Sum_probs=91.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      .+.++.|..|+||||++..||..+. ...| .+|.++.+|....+-...+..           |...   -++.+.... 
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~-----------~a~~---~gv~~~~~~-  201 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRI-----------FGKI---LGVPVHAVK-  201 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHH-----------HHHH---cCCceEecC-
Confidence            3555668999999999999999876 1345 699999999864321111110           0000   111111100 


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~  204 (294)
                                     ....+...+..+.  + +|+||||+++..  .......+..+.. .....+++|+.++. ....+
T Consensus       202 ---------------~~~~l~~~l~~l~--~-~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l  262 (374)
T PRK14722        202 ---------------DGGDLQLALAELR--N-KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTL  262 (374)
T ss_pred             ---------------CcccHHHHHHHhc--C-CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHH
Confidence                           0013445555554  4 899999999644  2333344444422 12344566665443 22333


Q ss_pred             HHHHHHHHhcC-------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347        205 RKEIDFCRKVN-------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV  268 (294)
Q Consensus       205 ~~~l~~l~~~~-------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~  268 (294)
                      ...+..+....       .+.-++|+++.|.       ...     ...+-.+....++|+.  +   .||+|-..
T Consensus       263 ~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE-------t~~-----~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~  326 (374)
T PRK14722        263 NEVVQAYRSAAGQPKAALPDLAGCILTKLDE-------ASN-----LGGVLDTVIRYKLPVHYVSTGQKVPENLYV  326 (374)
T ss_pred             HHHHHHHHHhhcccccccCCCCEEEEecccc-------CCC-----ccHHHHHHHHHCcCeEEEecCCCCCccccc
Confidence            33344443321       1356999999983       221     2234444445566655  2   47877444

>KOG0781|consensus

Probab=98.55  E-value=1.3e-06  Score=79.21  Aligned_cols=168  Identities=18%  Similarity=0.171  Sum_probs=106.7

Q ss_pred             HHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceec
Q psy11347         38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLE  117 (294)
Q Consensus        38 ~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~  117 (294)
                      .|.+..++..+-+..+.|-+||||||-.+-+|..|-  +.+.||++.-||+-..+.-..|+.+.+.+..-..        
T Consensus       368 dI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLl--qNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~--------  437 (587)
T KOG0781|consen  368 DIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLL--QNKFRVLIAACDTFRSGAVEQLRTHVERLSALHG--------  437 (587)
T ss_pred             HHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHH--hCCceEEEEeccchhhhHHHHHHHHHHHHHHhcc--------
Confidence            333333333444444447799999999999999999  8999999999998766655555554432211100        


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHH-HHHHHhhcCCCcEEEEec
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHL-SLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~-~~~~~l~~~~ad~vliv~  194 (294)
                      .-+.+...|.            ++......++.++..+. ++||+|+|||.+.+.+  ..+ ++...+....-|.|+.|.
T Consensus       438 ~~v~lfekGY------------gkd~a~vak~AI~~a~~-~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg  504 (587)
T KOG0781|consen  438 TMVELFEKGY------------GKDAAGVAKEAIQEARN-QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG  504 (587)
T ss_pred             chhHHHhhhc------------CCChHHHHHHHHHHHHh-cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence            0001111110            12234477888888874 4599999999976632  222 222333346789999988


Q ss_pred             CCc--hhhHHHHHHHHHHHHhcCCC--eeEEEeccccc
Q psy11347        195 TPQ--EVSLLDVRKEIDFCRKVNIP--IIGVVENMATF  228 (294)
Q Consensus       195 ~~~--~~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~  228 (294)
                      ++=  -.++..+..+-+.+..+.-+  +-++|+.+++.
T Consensus       505 ealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt  542 (587)
T KOG0781|consen  505 EALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT  542 (587)
T ss_pred             hhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence            663  36777777777777766522  56999999874

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.55  E-value=1.8e-07  Score=82.12  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=34.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-C-CcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-S-VDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g-~~VlliD~D~~~   90 (294)
                      .++|+|+ |.+|+||||++..||.+++  .. | ++|.++++|++.
T Consensus       194 ~~vi~~v-GptGvGKTTt~~kLa~~~~--~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       194 GGVIALV-GPTGVGKTTTLAKLAARFV--LEHGNKKVALITTDTYR  236 (282)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--HHcCCCeEEEEECCccc
Confidence            3456666 6799999999999999998  55 4 899999999865

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=98.55  E-value=7.4e-08  Score=88.28  Aligned_cols=206  Identities=15%  Similarity=0.146  Sum_probs=120.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcceeccC--
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPVFLEEN--  119 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~~~~~~--  119 (294)
                      +.|.+.++-+.+|||++++.|.+.++  .+|++|.-+-.  |+.+++.+.-.+..+      +........+....+.  
T Consensus         2 ~~iMv~GT~S~~GKS~~~aglcRi~~--~~G~~V~PFK~--QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL   77 (486)
T COG1492           2 KAIMVQGTTSDAGKSFLVAGLCRILA--RRGYRVAPFKS--QNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL   77 (486)
T ss_pred             CccEEEeccCCcchhhhhhhhhHHHH--hcCCccCCCch--hhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence            46889999999999999999999999  99999977644  444444443222221      1111222222222232  


Q ss_pred             --------eEEEecccccCCCCcce--eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----hHHHHHHHHhhc
Q psy11347        120 --------LSVMSIGFLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-----DEHLSLVQYLKG  184 (294)
Q Consensus       120 --------l~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-----~~~~~~~~~l~~  184 (294)
                              ..++-.+...-......  ..........+.+.++.+.  +.||+|++...++-.     +..+.-+.....
T Consensus        78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~--~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~  155 (486)
T COG1492          78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD--REYDVVVIEGAGSPAEINLRDRDIANMGVAEI  155 (486)
T ss_pred             EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh--hcccEEEEecCCChhhcCcccccccceeeehh
Confidence                    33333332222211110  0011122335566677666  449999999985321     111111111111


Q ss_pred             CCCcEEEEecCCch-hhHHHHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeecc
Q psy11347        185 LPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSV  262 (294)
Q Consensus       185 ~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~I  262 (294)
                      ..+. +|+|.+-+. ..+.+..-++..+... ...+.|+|+|+++       ....+.   ...++.+.+..|.++++++
T Consensus       156 ~dap-vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR-------Gd~~ll---~~gik~Le~~tg~~vlGv~  224 (486)
T COG1492         156 ADAP-VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR-------GDESLL---DPGLKWLEELTGVPVLGVL  224 (486)
T ss_pred             cCCC-EEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC-------CCHHHH---hhHHHHHHHhhCCeeEeec
Confidence            2455 678887776 4555566666666443 3456799999987       444444   4567777788999999999


Q ss_pred             CCCchhhh
Q psy11347        263 PIDPLVTR  270 (294)
Q Consensus       263 p~~~~~~~  270 (294)
                      |+.....+
T Consensus       225 P~~~~~~~  232 (486)
T COG1492         225 PYLKDALR  232 (486)
T ss_pred             cccccccC
Confidence            99866653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.52  E-value=3.4e-06  Score=75.99  Aligned_cols=144  Identities=16%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      +.+..+-|..||||||..+-||..+.-....++|.+|-+|...-+....|...                 ..+.-+|.  
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y-----------------a~im~vp~--  263 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY-----------------ADIMGVPL--  263 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHH-----------------HHHhCCce--
Confidence            44445558899999999999999877225678999999997653322222110                 01110110  


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhcCC-CcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKGLP-DIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~~~-ad~vliv~~~~~~s~~~~  204 (294)
                                 ......+.+...+..+.  + ||+|+|||.+..  +...++-+.++.... ...+.+|...+ ...+++
T Consensus       264 -----------~vv~~~~el~~ai~~l~--~-~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dl  328 (407)
T COG1419         264 -----------EVVYSPKELAEAIEALR--D-CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDL  328 (407)
T ss_pred             -----------EEecCHHHHHHHHHHhh--c-CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHH
Confidence                       11112336667777765  5 999999999543  333344444443322 23344444333 344677


Q ss_pred             HHHHHHHHhcCCCeeEEEecccc
Q psy11347        205 RKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       205 ~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ..+++.++..++.  ++|+.+.|
T Consensus       329 kei~~~f~~~~i~--~~I~TKlD  349 (407)
T COG1419         329 KEIIKQFSLFPID--GLIFTKLD  349 (407)
T ss_pred             HHHHHHhccCCcc--eeEEEccc
Confidence            7788888777666  89999987

>KOG0780|consensus

Probab=98.52  E-value=3.7e-07  Score=80.81  Aligned_cols=146  Identities=11%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+|.|+ |-.|+||||.+.-||.++.  ++|++++++-+|.-.+.....+.....              ..++.+.-++
T Consensus       101 psVimfV-GLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRagAfDQLkqnA~--------------k~~iP~ygsy  163 (483)
T KOG0780|consen  101 PSVIMFV-GLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAGAFDQLKQNAT--------------KARVPFYGSY  163 (483)
T ss_pred             CcEEEEE-eccCCCcceeHHHHHHHHH--hcCCceeEEeecccccchHHHHHHHhH--------------hhCCeeEecc
Confidence            4455555 6678999999999999999  999999999999865433222221110              1122222211


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                      .            .........+-+++.+.++ ||+||+||.+....      +.....+++   .-|.||+|.+....-
T Consensus       164 t------------e~dpv~ia~egv~~fKke~-fdvIIvDTSGRh~qe~sLfeEM~~v~~ai---~Pd~vi~VmDasiGQ  227 (483)
T KOG0780|consen  164 T------------EADPVKIASEGVDRFKKEN-FDVIIVDTSGRHKQEASLFEEMKQVSKAI---KPDEIIFVMDASIGQ  227 (483)
T ss_pred             c------------ccchHHHHHHHHHHHHhcC-CcEEEEeCCCchhhhHHHHHHHHHHHhhc---CCCeEEEEEeccccH
Confidence            1            1112336677788887544 99999999975532      222333333   678899999876522


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                        .+....+.+. ..+.+-++|+++.|.
T Consensus       228 --aae~Qa~aFk-~~vdvg~vIlTKlDG  252 (483)
T KOG0780|consen  228 --AAEAQARAFK-ETVDVGAVILTKLDG  252 (483)
T ss_pred             --hHHHHHHHHH-HhhccceEEEEeccc
Confidence              1111111111 123456888999874

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.51  E-value=2.8e-06  Score=79.23  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~   90 (294)
                      +.+++|+ |.+|+||||++..||..+. ...| ++|.++++|.+.
T Consensus       256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        256 GGVFALM-GPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYR  298 (484)
T ss_pred             CcEEEEE-CCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccc
Confidence            3455555 8899999999999999885 1344 589999999854

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.39  E-value=5.6e-06  Score=72.57  Aligned_cols=166  Identities=16%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +-+|.|+ |-+|+||||...-||.+|.  +.|++|++.-+|.-....-..+           ..|-+   .-++.++...
T Consensus       139 p~Vil~v-GVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL-----------~~w~e---r~gv~vI~~~  201 (340)
T COG0552         139 PFVILFV-GVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQL-----------EVWGE---RLGVPVISGK  201 (340)
T ss_pred             cEEEEEE-ecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHH-----------HHHHH---HhCCeEEccC
Confidence            4455555 7799999999999999999  8999999999986432211111           11111   1345554421


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc--C-----CCcEEEEecCC-
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG--L-----PDIGAIVVTTP-  196 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~--~-----~ad~vliv~~~-  196 (294)
                       .           +........+.++..+..+ ||++|+||.+.+.+..  +.-+..+..  .     ....++++.+. 
T Consensus       202 -~-----------G~DpAaVafDAi~~Akar~-~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt  268 (340)
T COG0552         202 -E-----------GADPAAVAFDAIQAAKARG-IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT  268 (340)
T ss_pred             -C-----------CCCcHHHHHHHHHHHHHcC-CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence             1           1122236667777776444 9999999998764322  222222111  1     22336666544 


Q ss_pred             -chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        197 -QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       197 -~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       +..+++.+..+-+...     +-|+|+.+.+..     .+..+       +-.+...+++|+.
T Consensus       269 tGqnal~QAk~F~eav~-----l~GiIlTKlDgt-----AKGG~-------il~I~~~l~~PI~  315 (340)
T COG0552         269 TGQNALSQAKIFNEAVG-----LDGIILTKLDGT-----AKGGI-------ILSIAYELGIPIK  315 (340)
T ss_pred             cChhHHHHHHHHHHhcC-----CceEEEEecccC-----CCcce-------eeeHHHHhCCCEE
Confidence             3355555555544432     459999998842     22222       2344556666666

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.23  E-value=1.4e-06  Score=69.48  Aligned_cols=119  Identities=24%  Similarity=0.278  Sum_probs=76.0

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCc
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSP  113 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~  113 (294)
                      .+..+-|..+......+..+.|-+|+||||||..|...|.  ..|++|.++|.|.-..+|..-+|...++..++....-+
T Consensus         9 ~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~--~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae   86 (197)
T COG0529           9 SVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE   86 (197)
T ss_pred             ccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH--HcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHH
Confidence            3445556666555555666668899999999999999999  99999999999988778777777776644333222211


Q ss_pred             ---ceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCC
Q psy11347        114 ---VFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP  168 (294)
Q Consensus       114 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p  168 (294)
                         +....++-.+-+-.++.          ....+..++++..    +.|=-|.||+|
T Consensus        87 vAkll~daG~iviva~ISP~----------r~~R~~aR~~~~~----~~FiEVyV~~p  130 (197)
T COG0529          87 VAKLLADAGLIVIVAFISPY----------REDRQMARELLGE----GEFIEVYVDTP  130 (197)
T ss_pred             HHHHHHHCCeEEEEEeeCcc----------HHHHHHHHHHhCc----CceEEEEeCCC
Confidence               22235555543322211          1112244455443    23667899999

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.12  E-value=2.1e-05  Score=68.62  Aligned_cols=93  Identities=19%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |++.|+|+|+... ....+...+  ..+|.+++|++++......+..+++.+...+.+. .+++|+++..      .   
T Consensus        64 ~~i~liDtPG~~~-f~~~~~~~l--~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~-iivvNK~D~~------~---  130 (268)
T cd04170          64 HKINLIDTPGYAD-FVGETRAAL--RAADAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRE------R---  130 (268)
T ss_pred             EEEEEEECcCHHH-HHHHHHHHH--HHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCccC------C---
Confidence            8999999997543 112233444  5799999999988766667777788888778774 4799999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee-eccCCCc
Q psy11347        240 FPKDSGGAEKMCAELSVPFL-GSVPIDP  266 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~~~  266 (294)
                       .++....+++.+.++.+++ ..+|...
T Consensus       131 -~~~~~~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170         131 -ADFDKTLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             -CCHHHHHHHHHHHhCCCeEEEEecccC
Confidence             1234456677677777666 4677554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=0.00021  Score=65.81  Aligned_cols=145  Identities=19%  Similarity=0.164  Sum_probs=76.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+++++ |.+|+||||+..-||..+.....+.+|.++-.|....+....+..           +-.+   -++.+... 
T Consensus       191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~-----------~a~i---lGvp~~~v-  254 (420)
T PRK14721        191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRI-----------YGKL---LGVSVRSI-  254 (420)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHH-----------HHHH---cCCceecC-
Confidence            3455555 899999999999999865411234688888777643211111000           0000   01111100 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                                     .....+...+..+.  + +|+|+||+++-..  ......+..+.. .....+++|+..+ ..-+.
T Consensus       255 ---------------~~~~dl~~al~~l~--~-~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~  315 (420)
T PRK14721        255 ---------------KDIADLQLMLHELR--G-KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDT  315 (420)
T ss_pred             ---------------CCHHHHHHHHHHhc--C-CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHH
Confidence                           01113445555554  4 9999999974332  222333333322 1233466666554 23344


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +..++..+...+  .-++|+++.|.
T Consensus       316 ~~~~~~~f~~~~--~~~~I~TKlDE  338 (420)
T PRK14721        316 LDEVISAYQGHG--IHGCIITKVDE  338 (420)
T ss_pred             HHHHHHHhcCCC--CCEEEEEeeeC
Confidence            555555555544  45999999983

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.08  E-value=3.9e-05  Score=63.58  Aligned_cols=66  Identities=24%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+.. ...-.+...+  ..+|.+++|++....-.......+..+.+.+.+.+.+++|++|.
T Consensus        65 ~~i~~iDtPG~~-~~~~~~~~~~--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~  130 (195)
T cd01884          65 RHYAHVDCPGHA-DYIKNMITGA--AQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM  130 (195)
T ss_pred             eEEEEEECcCHH-HHHHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence            788999999642 2223344444  68999999998876555667788888888888766688999984

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1532|consensus

Probab=98.07  E-value=1.4e-05  Score=68.04  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+++.++-|=-|+||||+..-|-..++  ..+.+..+|.+||.-.++..-.+++..+.......+.++..-      |-|
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG------PNG   89 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG------PNG   89 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC------CCc
Confidence            455666668889999999999999999  888889999999976565555555544333222222222111      112


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-----HHHHHHhhcCCCcEEEEecCCchh--
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-----LSLVQYLKGLPDIGAIVVTTPQEV--  199 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-----~~~~~~l~~~~ad~vliv~~~~~~--  199 (294)
                      .......-..     .....+..+++...  +.+|++|||+|+-+....     .-+...+....-..|+-+++....  
T Consensus        90 gI~TsLNLF~-----tk~dqv~~~iek~~--~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~  162 (366)
T KOG1532|consen   90 GIVTSLNLFA-----TKFDQVIELIEKRA--EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS  162 (366)
T ss_pred             chhhhHHHHH-----HHHHHHHHHHHHhh--cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC
Confidence            1111111000     01113446666655  449999999995321000     001122222344444444433221  


Q ss_pred             ---hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        200 ---SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       200 ---s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                         =++.+.-....+-+..+++ .+++|+.+.
T Consensus       163 p~tFMSNMlYAcSilyktklp~-ivvfNK~Dv  193 (366)
T KOG1532|consen  163 PTTFMSNMLYACSILYKTKLPF-IVVFNKTDV  193 (366)
T ss_pred             chhHHHHHHHHHHHHHhccCCe-EEEEecccc
Confidence               1233444455556677785 488999874

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.04  E-value=0.00019  Score=71.44  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCC
Q psy11347        159 GLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPK  232 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~  232 (294)
                      .+|++||++.+|+..      ....++..+   ... +|+|+......++.+...++.++..|+++.++|+|...     
T Consensus       184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l---~lP-vILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~-----  254 (817)
T PLN02974        184 GRVLALVETAGGVASPGPSGTLQCDLYRPL---RLP-AILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG-----  254 (817)
T ss_pred             cCCeEEEECCCcccccCCCCCCHHHHHHHh---CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc-----
Confidence            389999999977631      123344333   344 89999999999999999999999999999999999632     


Q ss_pred             CCCCCccCCCCchhHHHHHhhcCCceee--ccCCC
Q psy11347        233 CTKPSEIFPKDSGGAEKMCAELSVPFLG--SVPID  265 (294)
Q Consensus       233 ~~~~~~i~~~~~~~~~~~~~~~g~~~l~--~Ip~~  265 (294)
                             . .+...++++++. ++|++.  .+|.+
T Consensus       255 -------~-~N~~~l~~~~~~-~~pv~~lp~~p~~  280 (817)
T PLN02974        255 -------L-SNEKALLSYLSN-RVPVFVLPPVPED  280 (817)
T ss_pred             -------c-chHHHHHHHHhc-CCcEEeCCCCCCC
Confidence                   1 233445555543 788874  45544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.01  E-value=3.7e-06  Score=69.30  Aligned_cols=138  Identities=20%  Similarity=0.178  Sum_probs=77.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ..+.++-|.+|+||||+...|...-.  ..+.++.+-+-+.....--..++.....+++.++.+.....-+|+.+-|...
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v  105 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV  105 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence            34455558999999999999998887  6777776655444322111223334445667777777766666666544321


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccC-------------------------CCccEEEEcCCCCCC-----hHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-------------------------NGLEYLLIDTPPGTS-----DEHLS  177 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-------------------------~~yd~IiiD~p~~~~-----~~~~~  177 (294)
                      .-.        ...+..+...++|+.+...                         -+++++++|.|.+..     .+++.
T Consensus       106 ~~~--------~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~  177 (240)
T COG1126         106 KKL--------SKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD  177 (240)
T ss_pred             cCC--------CHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence            100        0111112222333322211                         148999999995443     34456


Q ss_pred             HHHHhhcCCCcEEEEecCC
Q psy11347        178 LVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       178 ~~~~l~~~~ad~vliv~~~  196 (294)
                      ++..+.....+ .++||+.
T Consensus       178 vm~~LA~eGmT-MivVTHE  195 (240)
T COG1126         178 VMKDLAEEGMT-MIIVTHE  195 (240)
T ss_pred             HHHHHHHcCCe-EEEEech
Confidence            66666544544 5666654

>cd04169 RF3 RF3 subfamily

Probab=98.00  E-value=0.00014  Score=63.35  Aligned_cols=91  Identities=21%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.++|+|+... ........+  ..+|.+|+|++.....-.....+++.....+.+ ..+++|+.+..          
T Consensus        71 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~----------  136 (267)
T cd04169          71 CVINLLDTPGHED-FSEDTYRTL--TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDRE----------  136 (267)
T ss_pred             EEEEEEECCCchH-HHHHHHHHH--HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccC----------
Confidence            8999999996432 112233344  578999999887654334456667777777777 55889998731          


Q ss_pred             CCCCchhHHHHHhhcCCceee-ccCC
Q psy11347        240 FPKDSGGAEKMCAELSVPFLG-SVPI  264 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l~-~Ip~  264 (294)
                      ...+...++++.+.++.+.+. .+|-
T Consensus       137 ~a~~~~~~~~l~~~l~~~~~~~~~Pi  162 (267)
T cd04169         137 GRDPLELLDEIEEELGIDCTPLTWPI  162 (267)
T ss_pred             CCCHHHHHHHHHHHHCCCceeEEecc
Confidence            111233456777777766653 4443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.98  E-value=3.4e-05  Score=64.79  Aligned_cols=75  Identities=23%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC---hhhhccccccccccccCCCCcceeccCeEE
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS---MPRMMGLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~---l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      ....+..+.|++|+||||+-..++....  ..+..|.+-+.|....+   +..+.......++++...++.+...+|+.+
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l  106 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL  106 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence            3455667779999999999999999999  88888888887766543   334445555678888888888877777764

>KOG0635|consensus

Probab=97.95  E-value=2.3e-05  Score=60.80  Aligned_cols=76  Identities=21%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             CCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc
Q psy11347         31 SVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA  108 (294)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~  108 (294)
                      ++.++...-|.++-+....+..+.|-+|+||||+|++|..+|-  ++|+-...+|.|....++..-|++..++..++.
T Consensus        14 h~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~--qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENI   89 (207)
T KOG0635|consen   14 HESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALL--QRGKLTYILDGDNVRHGLNKDLGFKAEDRNENI   89 (207)
T ss_pred             ecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHH--hcCceEEEecCcccccccccccCcchhhhhhhH
Confidence            4455666667777776666666778899999999999999999  899999999999888888888887766544443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.94  E-value=0.0001  Score=64.23  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.++|+|+... ........+  ..+|.+++|++..........++++.+...+.+.+ +++|+.+..      .   
T Consensus        64 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~------~---  130 (270)
T cd01886          64 HRINIIDTPGHVD-FTIEVERSL--RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT------G---  130 (270)
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence            8899999996432 223344444  57899999998876555566788888888888865 899999831      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee-eccCCC
Q psy11347        240 FPKDSGGAEKMCAELSVPFL-GSVPID  265 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~~  265 (294)
                       .+.....+++.+.++.... ..+|-.
T Consensus       131 -a~~~~~~~~l~~~l~~~~~~~~~Pis  156 (270)
T cd01886         131 -ADFFRVVEQIREKLGANPVPLQLPIG  156 (270)
T ss_pred             -CCHHHHHHHHHHHhCCCceEEEeccc
Confidence             1223345666666665433 345543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.90  E-value=2.2e-06  Score=73.19  Aligned_cols=45  Identities=29%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccc
Q psy11347         54 SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL  100 (294)
Q Consensus        54 s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~  100 (294)
                      -|..|+||||++..+..++.  ..|++|.+|.+||....+......+
T Consensus         2 iGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDPa~~~~~y~~~iD   46 (238)
T PF03029_consen    2 IGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDPAVENLPYPPDID   46 (238)
T ss_dssp             EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--TT-S--SS--SEE
T ss_pred             CCCCCCCHHHHHHHHHHHHH--hccCCceEEEcchHhcccccCchHH
Confidence            36789999999999999999  8999999999999765544433333

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.87  E-value=0.00015  Score=65.31  Aligned_cols=43  Identities=33%  Similarity=0.415  Sum_probs=35.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      ..+++++ |.-++||||++.-||--+-  .+|++|.++|+|+.+++
T Consensus        73 ~~~vmvv-G~vDSGKSTLt~~LaN~~l--~rG~~v~iiDaDvGQ~e  115 (398)
T COG1341          73 VGVVMVV-GPVDSGKSTLTTYLANKLL--ARGRKVAIIDADVGQSE  115 (398)
T ss_pred             CcEEEEE-CCcCcCHHHHHHHHHHHHh--hcCceEEEEeCCCCCcc
Confidence            4455555 5556999999999999999  89999999999997754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.84  E-value=0.00024  Score=60.80  Aligned_cols=86  Identities=23%  Similarity=0.116  Sum_probs=58.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.++|+|+... ........+  ..+|.+++|++...........+++.+++.+.+. .+++|+.+.      .    
T Consensus        64 ~~i~liDTPG~~~-f~~~~~~~l--~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~-iivvNK~D~------~----  129 (237)
T cd04168          64 TKVNLIDTPGHMD-FIAEVERSL--SVLDGAILVISAVEGVQAQTRILWRLLRKLNIPT-IIFVNKIDR------A----  129 (237)
T ss_pred             EEEEEEeCCCccc-hHHHHHHHH--HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc------c----
Confidence            8899999996542 222333444  5789999998877654556777888888888885 489999983      1    


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..++...++++.+.++..++
T Consensus       130 ~a~~~~~~~~i~~~~~~~~~  149 (237)
T cd04168         130 GADLEKVYQEIKEKLSSDIV  149 (237)
T ss_pred             CCCHHHHHHHHHHHHCCCeE
Confidence            11235567777777776555

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.83  E-value=0.00014  Score=57.70  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .++.|++|+||||++..++..+.  ..+.+|++++.+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~   39 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEI   39 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcch
Confidence            46778999999999999999999  789999999998654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.83  E-value=4.3e-05  Score=64.63  Aligned_cols=79  Identities=22%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM  123 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~  123 (294)
                      ......+.++-|.+|+||||+-..+-+.+.  ....++++-+-|...-+ ..-++....|+.+....++.....+|+.++
T Consensus        23 ~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d-~~~LRr~IGYviQqigLFPh~Tv~eNIa~V   99 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLD-PVELRRKIGYVIQQIGLFPHLTVAENIATV   99 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCC-HHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence            334567788889999999999999999999  88889999888876433 344667777888888888888888888776


Q ss_pred             ec
Q psy11347        124 SI  125 (294)
Q Consensus       124 ~~  125 (294)
                      |.
T Consensus       100 P~  101 (309)
T COG1125         100 PK  101 (309)
T ss_pred             hh
Confidence            63

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.80  E-value=0.00016  Score=58.44  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..+..+.|..|+||||+...|...|.  .+|++|..|-.+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~--~~g~~vg~Ik~~~~   45 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHH   45 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh--hcCCeEEEEEEcCC
Confidence            333444557899999999999999999  88999999976543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.79  E-value=0.00013  Score=59.18  Aligned_cols=75  Identities=20%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC--hhhhccccccccccccCCCCcceeccCeE
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS--MPRMMGLLNEQVHQSASGWSPVFLEENLS  121 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~--l~~~lg~~~~~~~~~~~~~~~~~~~~~l~  121 (294)
                      -....+.|+.|.+|+||||+...+.....  ....++.+.+.|...-.  ---++......+++....+.+....+|+.
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA  101 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA  101 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence            34677899999999999999999999999  88899999999875311  11123344444555555555544444444

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.77  E-value=0.00011  Score=57.59  Aligned_cols=40  Identities=25%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE-EEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG-VLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl-liD~D~~~   90 (294)
                      ++|.|+|.| |+||||++..|...|.  .+|++|. +.+.|..+
T Consensus         1 pvv~VvG~~-~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~g~   41 (140)
T PF03205_consen    1 PVVQVVGPK-NSGKTTLIRKLINELK--RRGYRVAVIKHTDHGQ   41 (140)
T ss_dssp             -EEEEEEST-TSSHHHHHHHHHHHHH--HTT--EEEEEE-STTS
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHh--HcCCceEEEEEccCCC
Confidence            467777665 8999999999999999  8999999 77777733

>KOG1533|consensus

Probab=97.76  E-value=1.9e-05  Score=65.73  Aligned_cols=49  Identities=29%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE  102 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~  102 (294)
                      ++-|..|+||||-+..+...|+  ..|.+|.+|.+||.+-++..-+..+..
T Consensus         6 vVIGPPgSGKsTYc~g~~~fls--~~gr~~~vVNLDPaNd~~~Y~~~v~I~   54 (290)
T KOG1533|consen    6 VVIGPPGSGKSTYCNGMSQFLS--AIGRPVAVVNLDPANDNLPYECAVDIR   54 (290)
T ss_pred             EEEcCCCCCccchhhhHHHHHH--HhCCceEEEecCCcccCCCCCCcccHH
Confidence            4458899999999999999999  999999999999977665555555444

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.73  E-value=0.00045  Score=56.19  Aligned_cols=65  Identities=25%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++++++|+|+... ........+  ..+|.++++++............+..+...+.+ +.+++|+.+.
T Consensus        62 ~~~~liDtpG~~~-~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~  126 (189)
T cd00881          62 RRVNFIDTPGHED-FSSEVIRGL--SVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR  126 (189)
T ss_pred             EEEEEEeCCCcHH-HHHHHHHHH--HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence            7899999996432 212233333  579999999887654444455566666665555 6799999884

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.71  E-value=0.00056  Score=57.25  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+.. .....+...+  ..+|.+|+|++...............+...+.+.+-+|+|+++.
T Consensus        77 ~~~~liDTpG~~-~~~~~~~~~~--~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~  142 (208)
T cd04166          77 RKFIIADTPGHE-QYTRNMVTGA--STADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDL  142 (208)
T ss_pred             ceEEEEECCcHH-HHHHHHHHhh--hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence            689999999632 2112233334  57999999998876444445555556666666656678999984

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.69  E-value=0.00037  Score=55.58  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      |++++.|++. .++||||+.-.|...|.  .+|++|.+|-....
T Consensus         1 m~~Il~ivG~-k~SGKTTLie~lv~~L~--~~G~rVa~iKH~hh   41 (161)
T COG1763           1 MMKILGIVGY-KNSGKTTLIEKLVRKLK--ARGYRVATVKHAHH   41 (161)
T ss_pred             CCcEEEEEec-CCCChhhHHHHHHHHHH--hCCcEEEEEEecCC
Confidence            6788888855 55999999999999999  99999999977654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.69  E-value=0.00021  Score=56.97  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.|+ |..|+||||++..|+..|.  .+|++|.++..|..
T Consensus         2 i~i~-G~~gsGKTtl~~~l~~~l~--~~G~~V~viK~~~~   38 (155)
T TIGR00176         2 LQIV-GPKNSGKTTLIERLVKALK--ARGYRVATIKHDHH   38 (155)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence            3444 6679999999999999999  88999999988753

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PLN03127 Elongation factor Tu; Provisional

Probab=97.66  E-value=0.00075  Score=63.09  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+.. .....+...+  ..+|.+++|++....-.......+..+...+++.+-+++|++|.
T Consensus       124 ~~i~~iDtPGh~-~f~~~~~~g~--~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl  189 (447)
T PLN03127        124 RHYAHVDCPGHA-DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV  189 (447)
T ss_pred             eEEEEEECCCcc-chHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            678999999653 2333333334  46999999999876555667788888888898876788999984

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.64  E-value=0.00025  Score=60.03  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |++|.|++. .|+||||++..|+..|.  .+|++|.++..+
T Consensus         1 m~vi~ivG~-~gsGKTtl~~~l~~~L~--~~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGF-KDSGKTTLIEKILKNLK--ERGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECC-CCChHHHHHHHHHHHHH--hCCCeEEEEEec
Confidence            567888876 59999999999999999  899999999754

>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]

Probab=97.64  E-value=0.00038  Score=62.54  Aligned_cols=192  Identities=15%  Similarity=0.230  Sum_probs=98.0

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCC--CcceeccCeEEE
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGW--SPVFLEENLSVM  123 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~--~~~~~~~~l~~~  123 (294)
                      ||+.+.+.....|+|||+++.+|++.|.  ++|.+|.++--=.      ...+.+...........  ......+.+.+-
T Consensus         1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~--~k~~kva~~kPI~------~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~   72 (354)
T COG0857           1 MSRTLLLIPTETGVGKTSISLGLLRALE--QKGLKVAYFKPIG------TRTGKDADDLTEEDIRATSSSLTYAEPLVLS   72 (354)
T ss_pred             CcceEEEeccCCCccHHHHHHHHHHHHH--HcCceeEEEeccc------cccCCccchhHHHHHHHhhhhcccCcccchh
Confidence            6889999999999999999999999999  9999999974311      11111111111100000  000111111110


Q ss_pred             ecccccCCCCcceeecCccchHHHHHHHHhhccC-CCccEEEEcCC-C------CCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-NGLEYLLIDTP-P------GTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~yd~IiiD~p-~------~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                      ..-...         ........+.+++...... ..+|+++++.- +      ..+-. .....-+   .+. ++++..
T Consensus        73 ~ae~L~---------~~~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~~~~ln-~~iA~~L---na~-~vlva~  138 (354)
T COG0857          73 FAEVLL---------STGQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPYALDLN-YEIAKNL---NAA-AVLVAR  138 (354)
T ss_pred             hHHHHh---------ccccchHHHHHHHHHHHHHhccCceEEeccceeccccCcccccc-HHHHhhc---Ccc-hhhccc
Confidence            000000         1111111333333333211 12566666543 1      11111 1122222   344 455555


Q ss_pred             CchhhHHHHHHHHHHH----HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        196 PQEVSLLDVRKEIDFC----RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l----~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      ....+.......++..    ...+..+.|+|+|+...         .......+...++.+..+..+++.+|.+.-+
T Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll  206 (354)
T COG0857         139 ALLVTPYELKSRVELALAAFGAAGNNLAGVVINNAPV---------DEAGRTEDLLAEFLESSGIAVVGVLPPNRLL  206 (354)
T ss_pred             cccCChhhhhhHHHHHHHHhcccCCceEEEEecCCCh---------hhhhhhhhHHHHHhhhccccccccCCHHHHh
Confidence            5555444444333333    33344789999996542         2233445677888888898888888877555

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.63  E-value=0.00039  Score=59.19  Aligned_cols=41  Identities=17%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..+..+.|..|+||||++..++..+.  +.|.++++++.+...
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~~e~~~   64 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVSTQLTT   64 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCCCH
Confidence            44777779999999999999988888  789999999987643

>PRK04296 thymidine kinase; Provisional

Probab=97.63  E-value=0.0014  Score=53.99  Aligned_cols=36  Identities=25%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ..|.++.|..|+||||.+..++..+.  ..|++|+++.
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k   37 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK   37 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe
Confidence            34677778899999999999999999  7899999993

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.62  E-value=0.00031  Score=56.14  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |+++.|++. .|+||||++..|...|.  ..|++|..+..|...
T Consensus         1 m~vi~i~G~-~gsGKTTli~~L~~~l~--~~g~~V~~iK~~~~~   41 (159)
T cd03116           1 MKVIGFVGY-SGSGKTTLLEKLIPALS--ARGLRVAVIKHDHHD   41 (159)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHH--HcCCcEEEEEecCCc
Confidence            456777755 59999999999999999  889999999877643

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.61  E-value=0.00096  Score=63.61  Aligned_cols=86  Identities=17%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |.+.++|+|+... ....+...+  ..+|.+|+|++.....-..+..+++.....+++ +.+++|+.+..          
T Consensus        79 ~~inliDTPG~~d-f~~~~~~~l--~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~----------  144 (526)
T PRK00741         79 CLINLLDTPGHED-FSEDTYRTL--TAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRD----------  144 (526)
T ss_pred             EEEEEEECCCchh-hHHHHHHHH--HHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCccc----------
Confidence            8899999996532 222233444  579999999987664444567777777778888 55899998731          


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .....+.++++.+.++.+..
T Consensus       145 ~a~~~~~l~~i~~~l~~~~~  164 (526)
T PRK00741        145 GREPLELLDEIEEVLGIACA  164 (526)
T ss_pred             ccCHHHHHHHHHHHhCCCCe
Confidence            11233456677777776544

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.61  E-value=0.00023  Score=58.55  Aligned_cols=66  Identities=26%  Similarity=0.250  Sum_probs=51.7

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .+.+.++|+|+.. +..-.+...+  ..+|.+|+|+++...-...+...+..+...+++ .-+++|++|.
T Consensus        69 ~~~i~~iDtPG~~-~f~~~~~~~~--~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~  134 (188)
T PF00009_consen   69 NRKITLIDTPGHE-DFIKEMIRGL--RQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL  134 (188)
T ss_dssp             SEEEEEEEESSSH-HHHHHHHHHH--TTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred             ccceeeccccccc-ceeeccccee--cccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence            3899999999643 3333444445  689999999998877777888999999999999 7799999983

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.59  E-value=0.00026  Score=59.44  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhc--cccccccccccCCCCcceeccCeEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM--GLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~l--g~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      +.+.+|+ |.+|+||||+...+...+.  .....|.+...|...-+-....  ......+++..+.+..+...+|+.+
T Consensus        34 Gei~~ii-GgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf  108 (263)
T COG1127          34 GEILAIL-GGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF  108 (263)
T ss_pred             CcEEEEE-CCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence            4445555 7788999999999999999  8888999999887654433332  2334456677777777666666655

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.58  E-value=0.00033  Score=57.24  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .++.|..|+|||+++..++...+  +.|.+|+++.++...
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~~   39 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEESP   39 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCH
Confidence            57789999999999999999999  889999999997653

A related protein is found in archaea.

>PRK00049 elongation factor Tu; Reviewed

Probab=97.56  E-value=0.00057  Score=63.00  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+. ......+...+  ..+|.++++++............+..+...+.+.+-+++|++|.
T Consensus        75 ~~i~~iDtPG~-~~f~~~~~~~~--~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~  140 (396)
T PRK00049         75 RHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             eEEEEEECCCH-HHHHHHHHhhh--ccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence            67999999964 22222333333  68999999998876555667778888888888866678999984

>TIGR00503 prfC peptide chain release factor 3

Probab=97.56  E-value=0.0012  Score=63.00  Aligned_cols=85  Identities=16%  Similarity=0.053  Sum_probs=54.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++........+..+++.++..+.+ +.+++|+.+..          
T Consensus        80 ~~inliDTPG~~d-f~~~~~~~l--~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~----------  145 (527)
T TIGR00503        80 CLVNLLDTPGHED-FSEDTYRTL--TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRD----------  145 (527)
T ss_pred             eEEEEEECCChhh-HHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccc----------
Confidence            8899999996532 222233444  579999999988764444566777777777777 56889998831          


Q ss_pred             CCCCchhHHHHHhhcCCce
Q psy11347        240 FPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~  258 (294)
                      ..+..+..+++.+.++...
T Consensus       146 ~~~~~~ll~~i~~~l~~~~  164 (527)
T TIGR00503       146 IRDPLELLDEVENELKINC  164 (527)
T ss_pred             CCCHHHHHHHHHHHhCCCC
Confidence            1123344566666666543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.53  E-value=0.0009  Score=57.04  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=43.0

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...++.+...+..  ....+..+.|..|+|||+++..++....  ..|.+|++++++-
T Consensus         8 ~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~   63 (234)
T PRK06067          8 STGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTEN   63 (234)
T ss_pred             ecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCC
Confidence            3556677776654  2466677778999999999999998877  6899999999974

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.52  E-value=0.0043  Score=49.52  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|--|+||||+...+....    .+.++.++-.+.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~----~~~~~~~i~~~~   36 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQ----HGRKIAVIENEF   36 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcc----cCCcEEEEecCC
Confidence            45677899999999999887653    367888876654

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.48  E-value=0.00052  Score=64.19  Aligned_cols=65  Identities=15%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      +.+.|+|+|+.. +..-.+...+  ..+|.+++|+++....+       ..+.+.+..+...+++.+.+++|++|
T Consensus        85 ~~i~lIDtPGh~-~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD  156 (446)
T PTZ00141         85 YYFTIIDAPGHR-DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD  156 (446)
T ss_pred             eEEEEEECCChH-HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence            889999999643 2233344444  68999999998876432       46778888888899998889999998

>PHA02542 41 41 helicase; Provisional

Probab=97.48  E-value=8.1e-05  Score=69.83  Aligned_cols=57  Identities=18%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             CcChHHHHhhh-cc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347         33 DPGIELVKSHL-SN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP   91 (294)
Q Consensus        33 ~~~~~~i~~~~-~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~   91 (294)
                      ...++.|...+ +. ....+.++++..|+||||++.++|...+  ..|++|+++.++....
T Consensus       173 ~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a--~~g~~Vl~fSLEM~~~  231 (473)
T PHA02542        173 PFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL--QQGYNVLYISMEMAEE  231 (473)
T ss_pred             CCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEEeccCCHH
Confidence            45567777666 33 3567889999999999999999999999  7899999999987653

>CHL00071 tufA elongation factor Tu

Probab=97.48  E-value=0.0013  Score=61.00  Aligned_cols=66  Identities=21%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+ .....-.+...+  ..+|.++++++....-.......+..+...+++.+-+++|++|.
T Consensus        75 ~~~~~iDtPG-h~~~~~~~~~~~--~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~  140 (409)
T CHL00071         75 RHYAHVDCPG-HADYVKNMITGA--AQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ  140 (409)
T ss_pred             eEEEEEECCC-hHHHHHHHHHHH--HhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence            6789999996 333223334444  57999999998876555667778888888888867788999984

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.47  E-value=0.00015  Score=63.93  Aligned_cols=42  Identities=31%  Similarity=0.464  Sum_probs=35.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+-|.+|+||||+...|+..+.  ..+.+|.+.+.|+..
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~   71 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVK   71 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCcc
Confidence            344555558999999999999999999  888999999888765

>PRK12736 elongation factor Tu; Reviewed

Probab=97.47  E-value=0.00079  Score=62.05  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+.. .....+...+  ..+|.+++|++.+......+...+..+...+++.+-+++|++|.
T Consensus        75 ~~i~~iDtPGh~-~f~~~~~~~~--~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~  140 (394)
T PRK12736         75 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL  140 (394)
T ss_pred             cEEEEEECCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence            688999999632 2222333333  57899999998876555567777888888888877788999984

>PLN03126 Elongation factor Tu; Provisional

Probab=97.47  E-value=0.0011  Score=62.41  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.. ...-.+...+  ..+|.+++|++........+...+..+...+++.+-+++|++|.
T Consensus       144 ~~i~liDtPGh~-~f~~~~~~g~--~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl  209 (478)
T PLN03126        144 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ  209 (478)
T ss_pred             cEEEEEECCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            688999999633 2222334444  57899999998776656667788888888898877789999984

>KOG1534|consensus

Probab=97.45  E-value=0.00015  Score=59.50  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=38.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |++.-.++-|.-|+||||.+.++-.+..  ..|+++.+|.+||..
T Consensus         1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e--~~gRs~~vVNLDPAa   43 (273)
T KOG1534|consen    1 MMRYAQLVMGPAGSGKSTYCSSMYEHCE--TVGRSVHVVNLDPAA   43 (273)
T ss_pred             CCceeEEEEccCCCCcchHHHHHHHHHH--hhCceeEEeecCHHH
Confidence            4566677789999999999999999999  899999999999964

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=97.45  E-value=0.00075  Score=61.93  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |++|.|++-| |+||||++..|...|.  .+|+||.+|-.+-
T Consensus         1 MkVi~IvG~s-gSGKTTLiekLI~~L~--~rG~rVavIKH~h   39 (452)
T PRK14495          1 MRVYGIIGWK-DAGKTGLVERLVAAIA--ARGFSVSTVKHSH   39 (452)
T ss_pred             CcEEEEEecC-CCCHHHHHHHHHHHHH--hCCCeEEEEeccC
Confidence            5688888765 9999999999999999  9999999987654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.42  E-value=0.00059  Score=58.58  Aligned_cols=42  Identities=33%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+-|.+|+||||+-..|+..+.  .....|++-+.|...
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~   68 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIAS   68 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhh
Confidence            334555559999999999999999999  888899998887654

>PRK12735 elongation factor Tu; Reviewed

Probab=97.41  E-value=0.0016  Score=60.03  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=46.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..++++|+|+. ....-.+...+  ..+|.++++++....-...+...+..+...+++.+.+++|++|.
T Consensus        75 ~~i~~iDtPGh-~~f~~~~~~~~--~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl  140 (396)
T PRK12735         75 RHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             cEEEEEECCCH-HHHHHHHHhhh--ccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence            67899999964 22222233333  57899999998876445566677788888888876678999984

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.41  E-value=0.00015  Score=57.60  Aligned_cols=43  Identities=33%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      .+.++.|..|+||||+|..|...|.  ..|.+|.++|.|.-...+
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~~l   45 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRHGL   45 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhhcc
Confidence            3566678999999999999999999  899999999999654433

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK00007 elongation factor G; Reviewed

Probab=97.40  E-value=0.0019  Score=63.90  Aligned_cols=91  Identities=19%  Similarity=0.078  Sum_probs=62.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.++|+|+.. +....+..++  ..+|.+|+|++....--.....++..+.+.+.+.+ +++|++|..      .   
T Consensus        75 ~~~~liDTPG~~-~f~~ev~~al--~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~------~---  141 (693)
T PRK00007         75 HRINIIDTPGHV-DFTIEVERSL--RVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT------G---  141 (693)
T ss_pred             eEEEEEeCCCcH-HHHHHHHHHH--HHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence            899999999654 2333455555  67899999998776656667888888888998875 899999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee-eccCC
Q psy11347        240 FPKDSGGAEKMCAELSVPFL-GSVPI  264 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~  264 (294)
                       .+.....+++.+.++.... ..||-
T Consensus       142 -~~~~~~~~~i~~~l~~~~~~~~ipi  166 (693)
T PRK00007        142 -ADFYRVVEQIKDRLGANPVPIQLPI  166 (693)
T ss_pred             -CCHHHHHHHHHHHhCCCeeeEEecC
Confidence             2234456677666665432 34443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.40  E-value=0.0014  Score=52.04  Aligned_cols=91  Identities=25%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             ccEEEEcCCCCC-----ChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGT-----SDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~-----~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      ..+.++|+|+..     +.+.......+.....|.++.|++.+.  ++.-..+..++.+.+.+ .-+++||+|..     
T Consensus        47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a-----  118 (156)
T PF02421_consen   47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEA-----  118 (156)
T ss_dssp             EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHH-----
T ss_pred             ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHH-----
Confidence            789999999632     233333445554568999999998876  44445677788888988 45899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCceeecc
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFLGSV  262 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l~~I  262 (294)
                      .+..+.    -..+.+.+.+|+|++...
T Consensus       119 ~~~g~~----id~~~Ls~~Lg~pvi~~s  142 (156)
T PF02421_consen  119 ERKGIE----IDAEKLSERLGVPVIPVS  142 (156)
T ss_dssp             HHTTEE----E-HHHHHHHHTS-EEEEB
T ss_pred             HHcCCE----ECHHHHHHHhCCCEEEEE
Confidence            122222    135677788899887543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.39  E-value=0.0026  Score=53.92  Aligned_cols=67  Identities=16%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.. ...-.+...+....+|.++++++.+..-......++.++...+++ ..+|+|++|.
T Consensus        84 ~~i~liDtpG~~-~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~  150 (224)
T cd04165          84 KLVTFIDLAGHE-RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDL  150 (224)
T ss_pred             cEEEEEECCCcH-HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence            789999999643 222223333321258999999987765566778888889989988 4689999983

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.37  E-value=0.001  Score=61.27  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=47.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. .....+...+  ..+|.++++++....-...+...+..+...+++.+-+++|++|.
T Consensus        75 ~~~~liDtpGh~-~f~~~~~~~~--~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl  140 (394)
T TIGR00485        75 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM  140 (394)
T ss_pred             EEEEEEECCchH-HHHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence            678999999643 2222333333  57899999998876545566777888888888877678999984

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.36  E-value=0.00086  Score=54.36  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~   63 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKD   63 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence            344555558999999999999999987  666777765443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04167 Snu114p Snu114p subfamily

Probab=97.35  E-value=0.0017  Score=54.45  Aligned_cols=65  Identities=20%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.... .......+  ..+|.+|+|++...........+++.+...+.+ ..+|+|+.+.
T Consensus        71 ~~i~iiDtpG~~~f-~~~~~~~~--~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~  135 (213)
T cd04167          71 YLFNIIDTPGHVNF-MDEVAAAL--RLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR  135 (213)
T ss_pred             EEEEEEECCCCcch-HHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence            88999999975432 11233333  578999999987653333444555655555655 5689999984

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.34  E-value=0.00046  Score=57.63  Aligned_cols=72  Identities=22%  Similarity=0.245  Sum_probs=59.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      .|+.+-|.+|+||||+...++....  ....+|.+-+.|...-..+........++++...-+..+...+|+.+
T Consensus        30 eiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~  101 (237)
T COG0410          30 EIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL  101 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhh
Confidence            3444458999999999999999999  88889999999988877777777777788888777777777777764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.33  E-value=0.0013  Score=53.57  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   63 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGED   63 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence            33444558999999999999999888  666777765443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.33  E-value=0.00071  Score=55.33  Aligned_cols=40  Identities=13%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   64 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV   64 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence            333455558899999999999999998  7777887655554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.32  E-value=0.0013  Score=50.21  Aligned_cols=39  Identities=31%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..++.|..|+||||++..+|..+.  ..+..+++++.+...
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~   42 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDIL   42 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEcc
Confidence            445567799999999999999999  666789999887643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK12739 elongation factor G; Reviewed

Probab=97.32  E-value=0.0013  Score=65.02  Aligned_cols=90  Identities=19%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.++++|+|+.. +....+...+  ..+|.+++|++....--.....++..+.+.+.+.+ +++|++|..      .   
T Consensus        73 ~~i~liDTPG~~-~f~~e~~~al--~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~------~---  139 (691)
T PRK12739         73 HRINIIDTPGHV-DFTIEVERSL--RVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI------G---  139 (691)
T ss_pred             EEEEEEcCCCHH-HHHHHHHHHH--HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence            899999999643 2333455555  57899999998876545556788888888888875 899999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee-eccC
Q psy11347        240 FPKDSGGAEKMCAELSVPFL-GSVP  263 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l-~~Ip  263 (294)
                       .+.....+++.+.++...+ ..+|
T Consensus       140 -~~~~~~~~~i~~~l~~~~~~~~iP  163 (691)
T PRK12739        140 -ADFFRSVEQIKDRLGANAVPIQLP  163 (691)
T ss_pred             -CCHHHHHHHHHHHhCCCceeEEec
Confidence             1233455666666655332 3445

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.31  E-value=0.00069  Score=63.84  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=44.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++|+|+|+.. ...-.+...+  ..+|.+++|++....-...+...+..+...+.+.+.+++|++|.
T Consensus       107 ~~i~~iDTPGh~-~f~~~~~~~l--~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~  172 (474)
T PRK05124        107 RKFIIADTPGHE-QYTRNMATGA--STCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL  172 (474)
T ss_pred             cEEEEEECCCcH-HHHHHHHHHH--hhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence            789999999732 2222333334  68999999998765433334455555666666666789999984

>KOG2749|consensus

Probab=97.28  E-value=0.00095  Score=59.03  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      ++++.++ |...+||||++..|-.+..  +.|++.+++|+|+.+++.
T Consensus       103 GPrv~vV-Gp~d~GKsTl~r~L~nyav--k~gr~Plfv~LDvgQ~si  146 (415)
T KOG2749|consen  103 GPRVMVV-GPTDVGKSTLCRILLNYAV--KQGRRPLFVELDVGQGSI  146 (415)
T ss_pred             CCEEEEE-CCCccchHHHHHHHHHHHH--HcCCcceEEEcCCCCCce
Confidence            6677777 5567999999999999999  789999999999988653

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.28  E-value=0.002  Score=51.78  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~   64 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEV   64 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence            344555569999999999999999988  6677776654443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.28  E-value=0.00075  Score=56.03  Aligned_cols=48  Identities=33%  Similarity=0.374  Sum_probs=36.3

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.........+.++.|.+|+||||++..|+..|.  ..|..+.++|.|..
T Consensus        16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~   63 (198)
T PRK03846         16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNV   63 (198)
T ss_pred             HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeH
Confidence            3333323334555558889999999999999999  78999999998864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.27  E-value=0.00099  Score=61.63  Aligned_cols=66  Identities=12%  Similarity=0.115  Sum_probs=46.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. ...-.+...+  ..+|.+++|++....-...+.+.+..+...+.+.+-+++|++|.
T Consensus        80 ~~~~liDtPGh~-~f~~~~~~~~--~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~  145 (406)
T TIGR02034        80 RKFIVADTPGHE-QYTRNMATGA--STADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL  145 (406)
T ss_pred             eEEEEEeCCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence            789999999632 1112233334  68999999998876544556666667777777767789999984

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.26  E-value=0.00097  Score=53.85  Aligned_cols=39  Identities=28%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ++.+-|.+|+||||+-..+|....  .....+++.+-|...
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~   65 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTA   65 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCc
Confidence            444558899999999999999999  889999998888543

>PRK12740 elongation factor G; Reviewed

Probab=97.26  E-value=0.0022  Score=63.25  Aligned_cols=91  Identities=20%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |++.++|+|+... ....+...+  ..+|.+++|+++...........+..+...+.+.+ +|+|+++..      .   
T Consensus        60 ~~i~liDtPG~~~-~~~~~~~~l--~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~------~---  126 (668)
T PRK12740         60 HKINLIDTPGHVD-FTGEVERAL--RVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA------G---  126 (668)
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence            8999999997543 112233334  57999999999887655666677777777777754 799999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee-eccCC
Q psy11347        240 FPKDSGGAEKMCAELSVPFL-GSVPI  264 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~  264 (294)
                       .+.....+++.+.++.+.+ ..+|.
T Consensus       127 -~~~~~~~~~l~~~l~~~~~~~~~p~  151 (668)
T PRK12740        127 -ADFFRVLAQLQEKLGAPVVPLQLPI  151 (668)
T ss_pred             -CCHHHHHHHHHHHHCCCceeEEecc
Confidence             1233456666666776554 34553

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.25  E-value=0.0017  Score=57.88  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...++.|...+. .  ....+..+.|..|+||||++..++...+  ..|.+|++||+.-
T Consensus        37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~   93 (325)
T cd00983          37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEH   93 (325)
T ss_pred             cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccc
Confidence            466777888777 2  3466777888999999999999999999  7899999999854

RecA couples ATP hydrolysis to DNA strand exchange.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.00042  Score=61.78  Aligned_cols=71  Identities=21%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      ...+.++-|.+|+||||+-..+|....  ..+.++.+-|-|.+.-   .--..+...++++...|+.+...+|+.+
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l---~P~~R~iamVFQ~yALyPhmtV~~Niaf   98 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDL---PPEKRGIAMVFQNYALYPHMTVYENIAF   98 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC---ChhHCCEEEEeCCccccCCCcHHHHhhh
Confidence            445677779999999999999999999  8999999988887641   1112333456677777777776666654

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.25  E-value=0.0047  Score=49.24  Aligned_cols=30  Identities=30%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             cCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         55 GKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        55 ~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +..|.||||.|..+|...+  ..|.+|+++-+
T Consensus         9 ~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQF   38 (159)
T cd00561           9 TGNGKGKTTAALGLALRAL--GHGYRVGVVQF   38 (159)
T ss_pred             CCCCCCHHHHHHHHHHHHH--HCCCeEEEEEE
Confidence            4459999999999999999  89999999543

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>cd01394 radB RadB

Probab=97.24  E-value=0.00085  Score=56.47  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .++.|...+..  ....+..+.|.+|+||||++..+|..++  ..|.+|+++|++..
T Consensus         4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~   58 (218)
T cd01394           4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGL   58 (218)
T ss_pred             chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCC
Confidence            34556665542  3467788889999999999999999999  78999999998754

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0036  Score=56.72  Aligned_cols=50  Identities=30%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             hHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         36 IELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        36 ~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+.+-+..  ...-+..++|..|+||||+...+|..++  .++ +||+|-...
T Consensus        79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEE  130 (456)
T COG1066          79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEE  130 (456)
T ss_pred             hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCc
Confidence            3344444444  4666888999999999999999999999  777 999997754

>PRK07667 uridine kinase; Provisional

Probab=97.20  E-value=0.00065  Score=56.19  Aligned_cols=40  Identities=23%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.+..++|.+|+||||+|..|+..|.  ..|.+|.+++.|..
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~--~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMK--QEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEEcCcc
Confidence            46777779999999999999999999  88999999999963

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.0026  Score=53.96  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..++-+-|.+|+||||+-..+|....  .....|.+-+--
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~   66 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRP   66 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcc
Confidence            33444558999999999999999999  777777665543

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.19  E-value=0.00067  Score=55.06  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=33.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.++.|-.|+||||++..|+..+.  ..|.+|.++|.|..
T Consensus         6 ~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~   43 (175)
T PRK00889          6 TVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAV   43 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccH
Confidence            555558899999999999999999  78899999999853

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.0021  Score=50.82  Aligned_cols=36  Identities=31%  Similarity=0.548  Sum_probs=29.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ++..|.+ .|..||||||++.-+|-.|.  ..|++|.-+
T Consensus         4 ~~mki~I-TG~PGvGKtTl~~ki~e~L~--~~g~kvgGf   39 (179)
T COG1618           4 MAMKIFI-TGRPGVGKTTLVLKIAEKLR--EKGYKVGGF   39 (179)
T ss_pred             cceEEEE-eCCCCccHHHHHHHHHHHHH--hcCceeeeE
Confidence            4445554 58899999999999999999  889998655

>PRK05595 replicative DNA helicase; Provisional

Probab=97.18  E-value=0.00029  Score=65.98  Aligned_cols=57  Identities=21%  Similarity=0.390  Sum_probs=43.8

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+... ...+.++++..|+|||+++.++|..++ ...|++|+++.+....
T Consensus       185 ~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a-~~~g~~vl~fSlEms~  242 (444)
T PRK05595        185 ASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAA-LREGKSVAIFSLEMSK  242 (444)
T ss_pred             cCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHH-HHcCCcEEEEecCCCH
Confidence            34566666655433 567889999999999999999999765 1469999999887643

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.18  E-value=0.00023  Score=60.88  Aligned_cols=42  Identities=17%  Similarity=0.363  Sum_probs=36.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~   90 (294)
                      ...+.++++..|+|||+++.+++..++  .. |.+|+++.++...
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~~~   54 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEMSK   54 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCCCH
Confidence            456888899999999999999999998  55 9999999998753

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.18  E-value=0.00098  Score=56.22  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   64 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDI   64 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence            344555559999999999999999988  6777887755544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.18  E-value=0.0017  Score=60.69  Aligned_cols=65  Identities=11%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      +.+.|+|+|+.. +..-.+...+  ..+|..|+|++.....+       ..+.+.+..+...+++.+-+++|+.|
T Consensus        85 ~~i~liDtPGh~-df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD  156 (447)
T PLN00043         85 YYCTVIDAPGHR-DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD  156 (447)
T ss_pred             EEEEEEECCCHH-HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence            889999999643 2222334444  68999999998876544       35667777777889987788899998

>PRK00089 era GTPase Era; Reviewed

Probab=97.17  E-value=0.0031  Score=55.57  Aligned_cols=66  Identities=17%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             ccEEEEcCCCCCChHH-------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEH-------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~-------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++++++|+|+-.....       ......+  ..+|.++++++.+..--.....+++.+...+.+ ..+|+|++|.
T Consensus        53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~--~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl  125 (292)
T PRK00089         53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSL--KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDL  125 (292)
T ss_pred             ceEEEEECCCCCCchhHHHHHHHHHHHHHH--hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence            7899999996433210       1112223  579999999887662223344555666555555 4588999983

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.15  E-value=0.0022  Score=54.88  Aligned_cols=42  Identities=31%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhh----------cCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAK----------SNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~----------~~~g~~VlliD~D~~~   90 (294)
                      .++++.+.+|+||||++..+|...+.          ...+.+|++++++...
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~   53 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR   53 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence            47888999999999999999998661          1256789999987643

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.00075  Score=57.48  Aligned_cols=38  Identities=39%  Similarity=0.450  Sum_probs=30.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+-|.+|+||||+...|+..+.  .....|.+-+.+..
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~   69 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS   69 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence            444558888999999999999999  88888866666543

>TIGR02012 tigrfam_recA protein RecA

Probab=97.13  E-value=0.0027  Score=56.51  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             CcChHHHHhhhc--c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         33 DPGIELVKSHLS--N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        33 ~~~~~~i~~~~~--~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...++.|...+.  . ....+..+.|..|+||||++.+++...+  ..|.+|++||+.-
T Consensus        37 ~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~   93 (321)
T TIGR02012        37 STGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEH   93 (321)
T ss_pred             cCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccc
Confidence            356777887775  2 3456777778899999999999999999  7899999999864

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.12  E-value=0.0084  Score=48.83  Aligned_cols=144  Identities=15%  Similarity=0.103  Sum_probs=72.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL  129 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (294)
                      +.+++|==|+||||+..+|.. ..  ..+.|+.+|-.|...-+.+..+      +           ...+..+.....  
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~--~~~~~~~vI~ne~g~~~iD~~~------l-----------~~~~~~v~~l~~--   59 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RN--RQGERVAVIVNEFGEVNIDAEL------L-----------QEDGVPVVELNN--   59 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HH--TTTS-EEEEECSTTSTHHHHHH------H-----------HTTT-EEEEECT--
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-Hh--cCCceeEEEEccccccccchhh------h-----------cccceEEEEecC--
Confidence            456777889999999999999 55  6899999998877532222111      0           111222222110  


Q ss_pred             CCCCcceeecCccchHHHHHHHHhhccCC--CccEEEEcCCCCCChHHHH----HHHHhhcCCCcEEEEecCCchh-hHH
Q psy11347        130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGN--GLEYLLIDTPPGTSDEHLS----LVQYLKGLPDIGAIVVTTPQEV-SLL  202 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~yd~IiiD~p~~~~~~~~~----~~~~l~~~~ad~vliv~~~~~~-s~~  202 (294)
                         ......    ....+...+..+....  ++|+|||.+.+......+.    .+...  ..-+.+|.++++... ...
T Consensus        60 ---gcicc~----~~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~--~~~~~iI~vVDa~~~~~~~  130 (178)
T PF02492_consen   60 ---GCICCT----LRDDLVEALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKED--FRLDSIITVVDATNFDELE  130 (178)
T ss_dssp             ---TTESS-----TTS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHH--ESESEEEEEEEGTTHGGHT
T ss_pred             ---CCcccc----cHHHHHHHHHHHHHhcCCCcCEEEECCccccccchhhhcccccccc--ccccceeEEeccccccccc
Confidence               000000    0113445555554333  4899999999744433320    01111  245778888877443 111


Q ss_pred             HH-HHHHHHHHhcCCCeeEEEeccccc
Q psy11347        203 DV-RKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       203 ~~-~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .. ..+.++++.   - -.+|+|+.+.
T Consensus       131 ~~~~~~~~Qi~~---A-DvIvlnK~D~  153 (178)
T PF02492_consen  131 NIPELLREQIAF---A-DVIVLNKIDL  153 (178)
T ss_dssp             THCHHHHHHHCT-----SEEEEE-GGG
T ss_pred             cchhhhhhcchh---c-CEEEEecccc
Confidence            11 122222222   1 3688999874

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.11  E-value=0.00053  Score=58.29  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~   63 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQD   63 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEe
Confidence            334555559999999999999999988  667777765444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.11  E-value=0.0029  Score=62.80  Aligned_cols=65  Identities=22%  Similarity=0.112  Sum_probs=46.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |++.|+|||+.... ...+..++  ..+|.+|+|++....-......+++.+.+.+.+.+ +++|++|.
T Consensus        86 ~~i~liDTPG~~~f-~~~~~~al--~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~  150 (720)
T TIGR00490        86 YLINLIDTPGHVDF-GGDVTRAM--RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR  150 (720)
T ss_pred             eEEEEEeCCCcccc-HHHHHHHH--HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence            99999999976431 12334444  67999999998765444556677777767777765 99999984

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd04163 Era Era subfamily

Probab=97.11  E-value=0.015  Score=45.75  Aligned_cols=65  Identities=15%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             ccEEEEcCCCCCChHHH-------HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSDEHL-------SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~-------~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ++++++|+|+-......       .....+  ..+|.++++++......+....+.+.+...+.+ ..+|+|+.+
T Consensus        51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D  122 (168)
T cd04163          51 AQIIFVDTPGIHKPKKKLGERMVKAAWSAL--KDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKID  122 (168)
T ss_pred             eEEEEEECCCCCcchHHHHHHHHHHHHHHH--HhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence            78999999864321110       111122  578988888887765333444555666655555 568999987

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.09  E-value=0.0031  Score=57.47  Aligned_cols=53  Identities=30%  Similarity=0.363  Sum_probs=43.1

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..++.+.+.+..  ....+.++.|..|+||||++..+|..++  ..+.+|++++...
T Consensus        66 TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EE  120 (372)
T cd01121          66 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEE  120 (372)
T ss_pred             cCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCc
Confidence            456666666643  3467888889999999999999999999  7889999998864

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK10218 GTP-binding protein; Provisional

Probab=97.08  E-value=0.013  Score=56.84  Aligned_cols=65  Identities=12%  Similarity=-0.017  Sum_probs=47.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ..-.+...+  ..+|.+|+|++........+...+..+...+++. -+++|++|.
T Consensus        68 ~~inliDTPG~~d-f~~~v~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~  132 (607)
T PRK10218         68 YRINIVDTPGHAD-FGGEVERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR  132 (607)
T ss_pred             EEEEEEECCCcch-hHHHHHHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence            8899999996433 222233334  6899999999887665666777777777888886 488999983

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.08  E-value=0.0078  Score=50.27  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             hhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        41 ~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.+......+..+.|-.|+||||+...++..+.  . +.+|.++..|..
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~--~-~~~v~v~~~~~~   60 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK--D-EVKIAVIEGDVI   60 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh--c-CCeEEEEECCCC
Confidence            344444555555668889999999999999877  3 579999998763

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0014  Score=55.98  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...+...+.  ....+|.+.+...
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~   68 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV   68 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence            4555558899999999999999999  7788888876644

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.07  E-value=0.013  Score=46.66  Aligned_cols=65  Identities=18%  Similarity=0.114  Sum_probs=42.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +++.++|+|+...... .....+  ..+|.++++++.+..........+..+...+.+ ..+|+|+++.
T Consensus        50 ~~~~iiDtpG~~~~~~-~~~~~~--~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl  114 (168)
T cd01887          50 PGITFIDTPGHEAFTN-MRARGA--SLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK  114 (168)
T ss_pred             ceEEEEeCCCcHHHHH-HHHHHH--hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence            8999999996432111 111222  578999999988764444455556666667776 5688899883

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.07  E-value=0.0013  Score=57.11  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|..|+||||++..+|...+  ..|.+|++++++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee   74 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES   74 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence            567888889999999999999999988  7899999999974

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.07  E-value=0.0019  Score=54.56  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-------hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-------SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-------s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.. ...-.....+  ..+|.+|+|++....       ....+...+......+.+.+.+++|++|.
T Consensus        77 ~~i~liDtpG~~-~~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl  149 (219)
T cd01883          77 YRFTILDAPGHR-DFVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD  149 (219)
T ss_pred             eEEEEEECCChH-HHHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence            889999999532 2222333333  579999999887653       12234445555556666667789999983

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.06  E-value=0.0039  Score=50.47  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~   65 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGAD   65 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEE
Confidence            344555569999999999999999988  667777764433

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK06696 uridine kinase; Validated

Probab=97.06  E-value=0.0014  Score=55.56  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+.+..++|.+|+||||+|..|+..|.  ..|.+|+.+-+|-..
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFH   62 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecccccc
Confidence            567778889999999999999999999  778899988777543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.05  E-value=0.0021  Score=62.18  Aligned_cols=65  Identities=15%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ..-.+...+  ..+|.+++|++........+..++..+...+++. -+++|+.|.
T Consensus        64 ~kinlIDTPGh~D-F~~ev~~~l--~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~  128 (594)
T TIGR01394        64 TKINIVDTPGHAD-FGGEVERVL--GMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR  128 (594)
T ss_pred             EEEEEEECCCHHH-HHHHHHHHH--HhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence            8899999996432 222333344  6799999999987766677788888888888885 589999983

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.04  E-value=0.0042  Score=50.94  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .+-...+-+..|-||||.|..+|...+  -.|.+|+++-+
T Consensus        21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQF   58 (191)
T PRK05986         21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQF   58 (191)
T ss_pred             cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEE
Confidence            444556667889999999999999999  89999999865

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=97.04  E-value=0.00067  Score=63.10  Aligned_cols=57  Identities=21%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+.. ....+.++++..|+|||+++.++|..++ ...|++|+++.++...
T Consensus       178 ~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a-~~~g~~v~~fSlEm~~  235 (421)
T TIGR03600       178 STGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA-LREGKPVLFFSLEMSA  235 (421)
T ss_pred             eCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCH
Confidence            4556666666543 3566889999999999999999998887 2468999999988643

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.03  E-value=0.0019  Score=55.25  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   65 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDI   65 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEec
Confidence            344555558999999999999999887  6667777655443

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=97.03  E-value=0.0011  Score=61.62  Aligned_cols=52  Identities=25%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             CceEEEEEecCC---CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347         46 VKHKVLVLSGKG---GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE  102 (294)
Q Consensus        46 ~~~~i~v~s~kG---GvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~  102 (294)
                      ..++|.|++.-.   |.||||++.+||..|+  ..|+||+++   ...+++...||....
T Consensus        37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la--~~Gkk~l~~---LR~PSlg~~fg~kgg   91 (524)
T cd00477          37 DGKLILVTAITPTPAGEGKTTTTIGLAQALN--AHGKKAIAC---LREPSLGPTFGIKGG   91 (524)
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH--HhCCcEEEE---EecCCcCcccCCCCC
Confidence            478999999888   9999999999999999  899999988   667788888877655

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>COG1159 Era GTPase [General function prediction only]

Probab=97.03  E-value=0.0075  Score=52.38  Aligned_cols=67  Identities=16%  Similarity=0.057  Sum_probs=42.7

Q ss_pred             CccEEEEcCCCCCChHH-------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        159 GLEYLLIDTPPGTSDEH-------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~-------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++.+|++|||+-.....       -.....+  ..+|.++.+++.+..-=..-..+++.+...+.+ .-+++|+++.
T Consensus        53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~  126 (298)
T COG1159          53 NAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDK  126 (298)
T ss_pred             CceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEcccc
Confidence            38999999995432111       1112222  689999999987763333555666777664445 4588999984

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.03  E-value=0.0017  Score=54.91  Aligned_cols=52  Identities=21%  Similarity=0.288  Sum_probs=43.0

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..++.|...+..  ....+..+.|.+|+|||+++..+|...+  ..+.+|+++|++
T Consensus         7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e   60 (225)
T PRK09361          7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE   60 (225)
T ss_pred             CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC
Confidence            455666666643  2466788889999999999999999999  789999999998

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.02  E-value=0.0078  Score=48.29  Aligned_cols=73  Identities=23%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh---hhhccccccccccccCCCCcceeccCeEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM---PRMMGLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l---~~~lg~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      +..++++ |.+|+||||+...||..=.  ..+..|.+.+.+...-+-   ..+.+.+...+++++..++.+..-+|+.+
T Consensus        36 Ge~vaiV-G~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l  111 (228)
T COG4181          36 GETVAIV-GPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL  111 (228)
T ss_pred             CceEEEE-cCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence            4557777 7788999999999999877  788899999887654332   22334444455666666655555555543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.01  E-value=0.006  Score=53.37  Aligned_cols=48  Identities=25%  Similarity=0.266  Sum_probs=37.5

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .|..+......+.-+.|..|+||||+...+...|.  .. .++.+++.|..
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~~-~~~~VI~gD~~  142 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK--DS-VPCAVIEGDQQ  142 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc--cC-CCEEEECCCcC
Confidence            34455555666666778899999999999999998  44 68999988864

>PRK09165 replicative DNA helicase; Provisional

Probab=97.00  E-value=0.00073  Score=64.04  Aligned_cols=58  Identities=22%  Similarity=0.425  Sum_probs=44.3

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcC-------------CCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSN-------------ESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~-------------~g~~VlliD~D~~~   90 (294)
                      ...++.|...+... ...+.++++..|+||||++.++|...++..             .|.+|+++-+....
T Consensus       201 ~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~  272 (497)
T PRK09165        201 STGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA  272 (497)
T ss_pred             cCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence            45667777766543 567889999999999999999999987211             27889999887654

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.00  E-value=0.0045  Score=57.93  Aligned_cols=53  Identities=28%  Similarity=0.320  Sum_probs=42.9

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..++.+.+.+..  ....+..+.|..|+||||++..+|..++  ..+.+|++++...
T Consensus        64 TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee  118 (446)
T PRK11823         64 TGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE  118 (446)
T ss_pred             CCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc
Confidence            445566665543  3466888889999999999999999999  7899999999864

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.99  E-value=0.00073  Score=56.58  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   63 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDV   63 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcc
Confidence            556669999999999999999888  6677887765544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=96.97  E-value=0.0075  Score=59.69  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+... ........+  ..+|.+++|++....--.....++..+.+.+.+.+ +++|++|.
T Consensus        75 ~~i~liDTPG~~~-~~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~  139 (689)
T TIGR00484        75 HRINIIDTPGHVD-FTVEVERSL--RVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK  139 (689)
T ss_pred             eEEEEEECCCCcc-hhHHHHHHH--HHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence            8899999996543 222344444  57899999998766444456677777888888864 79999984

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.96  E-value=0.0014  Score=55.88  Aligned_cols=40  Identities=33%  Similarity=0.474  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~   64 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDI   64 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence            344555559999999999999999988  6677777654443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.96  E-value=0.003  Score=54.01  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~   66 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDL   66 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeec
Confidence            444556669999999999999999988  6677787655544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.96  E-value=0.0008  Score=56.62  Aligned_cols=40  Identities=35%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~   68 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDI   68 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEeh
Confidence            344555559999999999999999988  6777787655443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.95  E-value=0.0012  Score=56.36  Aligned_cols=40  Identities=33%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   64 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDI   64 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEEC
Confidence            344555559999999999999999887  6667777655444

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.95  E-value=0.00068  Score=56.96  Aligned_cols=40  Identities=28%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   67 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDL   67 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeh
Confidence            334555559999999999999999988  6677787655443

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=96.94  E-value=0.0078  Score=50.90  Aligned_cols=66  Identities=20%  Similarity=0.058  Sum_probs=47.3

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .|.+.|+|+|+.... ...+...+  ..+|.+++|++........+...++.....+.+ .-+++|+++.
T Consensus        72 ~~~i~iiDTPG~~~f-~~~~~~~l--~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~  137 (222)
T cd01885          72 EYLINLIDSPGHVDF-SSEVTAAL--RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDR  137 (222)
T ss_pred             ceEEEEECCCCcccc-HHHHHHHH--HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence            388999999965432 22333444  579999999988775555667777777767776 5689999983

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=96.93  E-value=0.0018  Score=60.70  Aligned_cols=52  Identities=29%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             CceEEEEEecCC---CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347         46 VKHKVLVLSGKG---GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE  102 (294)
Q Consensus        46 ~~~~i~v~s~kG---GvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~  102 (294)
                      ..++|.|++.-.   |.||||++.+||..|+  +.|++|  +|+ ...+++...||....
T Consensus        53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la--~~Gk~~--i~~-LR~Pslg~~fg~kgg  107 (578)
T PRK13506         53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLN--ALGQKV--CAC-IRQPSMGPVFGVKGG  107 (578)
T ss_pred             CCeEEEEEecCCCCCCCCHHHHHHHHHHHHH--HhCCce--EEE-eccCCcCCccCCCCC
Confidence            479999999888   9999999999999999  899999  777 888898888877654

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.92  E-value=0.0064  Score=50.35  Aligned_cols=117  Identities=12%  Similarity=0.194  Sum_probs=78.1

Q ss_pred             HHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcc
Q psy11347         37 ELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPV  114 (294)
Q Consensus        37 ~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~  114 (294)
                      +.|.+|++.  .-..+..+=|..|.|||.++.-+++-+-  +.|++|.++-+...   ...++....    .-.....+.
T Consensus        15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L--~~g~~v~yvsTe~T---~refi~qm~----sl~ydv~~~   85 (235)
T COG2874          15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL--MNGYRVTYVSTELT---VREFIKQME----SLSYDVSDF   85 (235)
T ss_pred             HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH--hCCceEEEEEechh---HHHHHHHHH----hcCCCchHH
Confidence            455667776  3466777779999999999999999999  89999999987542   222221111    011122334


Q ss_pred             eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCC
Q psy11347        115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP  169 (294)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~  169 (294)
                      .....+.++|.......+      ........+..+++..+..+ +|+||||.=.
T Consensus        86 ~l~G~l~~~~~~~~~~~~------~~~~~~~~L~~l~~~~k~~~-~dViIIDSls  133 (235)
T COG2874          86 LLSGRLLFFPVNLEPVNW------GRRSARKLLDLLLEFIKRWE-KDVIIIDSLS  133 (235)
T ss_pred             HhcceeEEEEeccccccc------ChHHHHHHHHHHHhhHHhhc-CCEEEEeccc
Confidence            455778888876443333      33444557777777777555 9999999874

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.91  E-value=0.0009  Score=56.92  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   69 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDL   69 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence            444555559999999999999999998  7777887765544

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.90  E-value=0.024  Score=47.01  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~   86 (294)
                      +.++.|..|+||||+...|+..+.  .. +.+++.++-
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~   38 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIED   38 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcC
Confidence            567779999999999999998887  43 456665544

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK08760 replicative DNA helicase; Provisional

Probab=96.90  E-value=0.0005  Score=64.76  Aligned_cols=57  Identities=18%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+... ..-+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus       213 ~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a-~~~g~~V~~fSlEMs~  270 (476)
T PRK08760        213 PTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAA-IKSKKGVAVFSMEMSA  270 (476)
T ss_pred             cCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHH-HhcCCceEEEeccCCH
Confidence            34556666555443 467889999999999999999999887 1358899999887643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.89  E-value=0.0029  Score=54.18  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   66 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDI   66 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEh
Confidence            333455558999999999999999987  6677787654443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.89  E-value=0.0035  Score=50.63  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      |-+. +..|.||||.|..+|...+  ..|++|+++-+
T Consensus         8 i~v~-~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQF   41 (173)
T TIGR00708         8 IIVH-TGNGKGKTTAAFGMALRAL--GHGKKVGVIQF   41 (173)
T ss_pred             EEEE-CCCCCChHHHHHHHHHHHH--HCCCeEEEEEE
Confidence            4444 4489999999999999999  89999998854

Alternate name: corrinoid adenosyltransferase.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.89  E-value=0.0013  Score=55.65  Aligned_cols=53  Identities=23%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347         35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC   89 (294)
Q Consensus        35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~   89 (294)
                      .++.|.+.+..  ....+..+.|..|+|||+++..++...+  .. |.+|+++.++..
T Consensus         4 GI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~   59 (226)
T PF06745_consen    4 GIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP   59 (226)
T ss_dssp             SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-
T ss_pred             CchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC
Confidence            34555555633  3456777779999999999999998877  67 999999999764

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.88  E-value=0.0029  Score=52.96  Aligned_cols=44  Identities=30%  Similarity=0.401  Sum_probs=32.4

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++-....+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~   62 (211)
T cd03298          19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDV   62 (211)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence            3334455666669999999999999999988  6677787644443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.88  E-value=0.0013  Score=53.72  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=32.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++|..|+||||+|..|+..+.  ..|.++.++..|-.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf   38 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDY   38 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhc
Confidence            45678999999999999999999  78999999988854

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.88  E-value=0.0022  Score=54.90  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   67 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDI   67 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            334455558999999999999999988  6677787755544

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.87  E-value=0.001  Score=60.05  Aligned_cols=41  Identities=24%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~   70 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT   70 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence            333444459999999999999999998  77778887666553

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.87  E-value=0.0036  Score=59.71  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   75 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC   75 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334455559999999999999999988  6677787654444

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.87  E-value=0.047  Score=40.75  Aligned_cols=62  Identities=19%  Similarity=0.130  Sum_probs=39.9

Q ss_pred             ccEEEEcCCCCCCh--------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347        160 LEYLLIDTPPGTSD--------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM  225 (294)
Q Consensus       160 yd~IiiD~p~~~~~--------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~  225 (294)
                      ..++|+|+|+-...        ........+  ..+|.++.+++.+...-.....++++++  ..+.+.+|+|+
T Consensus        47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK  116 (116)
T PF01926_consen   47 KKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK  116 (116)
T ss_dssp             EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred             eeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence            57799999965432        111344444  6899999999876633345566667775  44446788885

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.87  E-value=0.0013  Score=51.99  Aligned_cols=37  Identities=38%  Similarity=0.394  Sum_probs=32.4

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .++.|..|+||||++..|+..+.  ..+.++.++|.|..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~--~~g~~~~~i~~d~~   38 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLF--QRGRPVYVLDGDNV   38 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEEcCHHH
Confidence            45679999999999999999999  78889999987753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.86  E-value=0.0057  Score=59.95  Aligned_cols=168  Identities=17%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc---------------------EEEEecCCCCCChh
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD---------------------VGVLDLDICGPSMP   94 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~---------------------VlliD~D~~~~~l~   94 (294)
                      +.+..........+=.++-|..++||||+...|.....  .-..+                     ..+.|..+.     
T Consensus        12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~-----   84 (632)
T PRK05506         12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSK--MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAA-----   84 (632)
T ss_pred             HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHH-----


Q ss_pred             hhccccccccccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH
Q psy11347         95 RMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE  174 (294)
Q Consensus        95 ~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~  174 (294)
                                          ....++.+-..........                          +.++|+|+| |....
T Consensus        85 --------------------E~~rg~Tid~~~~~~~~~~--------------------------~~~~liDtP-G~~~f  117 (632)
T PRK05506         85 --------------------EREQGITIDVAYRYFATPK--------------------------RKFIVADTP-GHEQY  117 (632)
T ss_pred             --------------------HHhCCcCceeeeeEEccCC--------------------------ceEEEEECC-ChHHH


Q ss_pred             HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhc
Q psy11347        175 HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAEL  254 (294)
Q Consensus       175 ~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (294)
                      .-.+...+  ..+|.+++|++........+...+..+...+.+.+-+++|++|..    ++..+........+.++.+.+
T Consensus       118 ~~~~~~~~--~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~----~~~~~~~~~i~~~i~~~~~~~  191 (632)
T PRK05506        118 TRNMVTGA--STADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV----DYDQEVFDEIVADYRAFAAKL  191 (632)
T ss_pred             HHHHHHHH--HhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc----cchhHHHHHHHHHHHHHHHHc


Q ss_pred             CCceeeccC
Q psy11347        255 SVPFLGSVP  263 (294)
Q Consensus       255 g~~~l~~Ip  263 (294)
                      +..-..+||
T Consensus       192 ~~~~~~iip  200 (632)
T PRK05506        192 GLHDVTFIP  200 (632)
T ss_pred             CCCCccEEE

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.86  E-value=0.00091  Score=56.28  Aligned_cols=40  Identities=30%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   69 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDV   69 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEc
Confidence            344555558899999999999999887  6677887755444

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.86  E-value=0.0067  Score=49.02  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~   64 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGV   64 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCE
Confidence            444556669999999999999999988  66677765443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.86  E-value=0.0056  Score=57.17  Aligned_cols=65  Identities=20%  Similarity=0.091  Sum_probs=39.8

Q ss_pred             ccEEEEcCCCCCC-hH-----HH-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTS-DE-----HL-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~-~~-----~~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      +++.|+|+|+... ..     .. ....++  ..+|.+|++++....-...-..+.+++++.+.+ +.+|+|++|
T Consensus        49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D  120 (435)
T PRK00093         49 REFILIDTGGIEPDDDGFEKQIREQAELAI--EEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVD  120 (435)
T ss_pred             cEEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECcc
Confidence            6789999996443 11     11 112223  579999999887653222223455666666666 558999988

>cd04171 SelB SelB subfamily

Probab=96.85  E-value=0.0081  Score=47.46  Aligned_cols=66  Identities=15%  Similarity=0.024  Sum_probs=39.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+... ........+  ..+|.+++|.+.+..........+..++..+.+.+-+++|++|.
T Consensus        51 ~~~~~~DtpG~~~-~~~~~~~~~--~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl  116 (164)
T cd04171          51 KRLGFIDVPGHEK-FIKNMLAGA--GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL  116 (164)
T ss_pred             cEEEEEECCChHH-HHHHHHhhh--hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence            6789999995321 111222223  57999999998765322333344444555555456789999883

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG2403 Predicted GTPase [General function prediction only]

Probab=96.85  E-value=0.0049  Score=54.95  Aligned_cols=39  Identities=31%  Similarity=0.406  Sum_probs=36.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+|.+++..-|+|||+++.-+|+.|+  .+|+||+++-.
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~--ergyrv~vVrh  163 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLR--ERGYRVCVVRH  163 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHH--HcCCceEEEec
Confidence            3578999999999999999999999999  99999999966

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.85  E-value=0.0038  Score=59.11  Aligned_cols=55  Identities=11%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.+.+.+..  ....+.+++|..|+||||++..++...+  .+|.+|+++-.+..
T Consensus       246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~eEs  302 (484)
T TIGR02655       246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYEES  302 (484)
T ss_pred             CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCC
Confidence            4566777777766  3677888999999999999999999999  88999999988764

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01890 LepA LepA subfamily

Probab=96.84  E-value=0.029  Score=45.13  Aligned_cols=64  Identities=19%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.... .......+  ..+|.+|++.+.... +.... ..+..+...+.+ +.+|+|+.|.
T Consensus        67 ~~~~l~Dt~G~~~~-~~~~~~~~--~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-iiiv~NK~Dl  131 (179)
T cd01890          67 YLLNLIDTPGHVDF-SYEVSRSL--AACEGALLLVDATQGVEAQTL-ANFYLALENNLE-IIPVINKIDL  131 (179)
T ss_pred             EEEEEEECCCChhh-HHHHHHHH--HhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCC-EEEEEECCCC
Confidence            78999999964321 12222333  579999999987652 22222 222333345565 5689999883

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00416 sms DNA repair protein RadA

Probab=96.84  E-value=0.0064  Score=56.99  Aligned_cols=53  Identities=25%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..++.+.+.+..  ....+.+++|..|+||||++..+|..++  ..|.+|++++...
T Consensus        78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE  132 (454)
T TIGR00416        78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE  132 (454)
T ss_pred             cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence            345555555532  4567888999999999999999999999  7788999999864

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=96.84  E-value=0.0072  Score=59.83  Aligned_cols=41  Identities=34%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |++|+||||+...|+..+.  ....+|.+-+.|...
T Consensus       479 Ge~vaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~  519 (686)
T TIGR03797       479 GEFVAIV-GPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAG  519 (686)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCc
Confidence            5556665 8999999999999999999  788889887766654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=96.83  E-value=0.0094  Score=49.10  Aligned_cols=65  Identities=15%  Similarity=0.069  Sum_probs=42.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ........+  ..+|.+++|++...........++..+...+.+ ..+++|++|.
T Consensus        65 ~~~~l~DtpG~~~-~~~~~~~~~--~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl  129 (194)
T cd01891          65 TKINIVDTPGHAD-FGGEVERVL--SMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDR  129 (194)
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence            7899999996432 111222223  578999999987654444445556666566777 4688999983

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.83  E-value=0.00092  Score=59.43  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+.+.|+.
T Consensus        35 i~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~   72 (306)
T PRK13537         35 CFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVP   72 (306)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecc
Confidence            444448899999999999999988  77778888777664

>cd01894 EngA1 EngA1 subfamily

Probab=96.82  E-value=0.0077  Score=47.17  Aligned_cols=66  Identities=20%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             ccEEEEcCCCCCChHH------H-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEH------L-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~------~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +++.++|+|+......      . .....+  ..+|.++++++...........+.+.++..+.+ +.+|+|+.+.
T Consensus        45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~  117 (157)
T cd01894          45 REFILIDTGGIEPDDEGISKEIREQAELAI--EEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN  117 (157)
T ss_pred             eEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence            7899999997544211      0 111222  578999999877543222233455666666655 5689999883

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.82  E-value=0.0014  Score=55.01  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~   64 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDV   64 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence            344555569999999999999999888  6677787655443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.0017  Score=55.33  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i   73 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM   73 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence            444555669999999999999999988  6677887755554

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.81  E-value=0.0013  Score=55.17  Aligned_cols=40  Identities=33%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~   66 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDV   66 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence            344555559999999999999999987  6677887765554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00665 DnaB replicative DNA helicase

Probab=96.81  E-value=0.0013  Score=61.35  Aligned_cols=57  Identities=19%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+.. ....+.++++..|+|||+++.++|..++ ...|++|+++-++...
T Consensus       179 ~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a-~~~g~~vl~~SlEm~~  236 (434)
T TIGR00665       179 PTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA-IKEGKPVAFFSLEMSA  236 (434)
T ss_pred             cCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH-HhCCCeEEEEeCcCCH
Confidence            4556666665543 3566889999999999999999999987 1368999999888654

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.81  E-value=0.0025  Score=61.75  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..++++ |++|+||||+...|+..+.  ....+|.+-+.|..
T Consensus       369 G~~~aIv-G~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~  408 (582)
T PRK11176        369 GKTVALV-GRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLR  408 (582)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHhccC--CCCceEEECCEEhh
Confidence            4455555 8999999999999999999  77888887665543

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=96.80  E-value=0.0065  Score=58.89  Aligned_cols=40  Identities=18%  Similarity=0.171  Sum_probs=34.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ++++.|+ |..|+||||+...|...|.  .+|+||..|..|-.
T Consensus        10 ~~vi~iv-G~s~sGKTTlie~li~~L~--~~G~rVavIKh~~h   49 (597)
T PRK14491         10 IPLLGFC-AYSGTGKTTLLEQLIPELN--QRGLRLAVIKHAHH   49 (597)
T ss_pred             ccEEEEE-cCCCCCHHHHHHHHHHHHH--hCCceEEEEEcCCc
Confidence            6777777 4688999999999999999  89999999988643

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.80  E-value=0.0013  Score=55.40  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  .....|.+-+.+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   66 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSI   66 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEec
Confidence            444555559999999999999999988  6777787654443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.80  E-value=0.0011  Score=58.76  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=30.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus        19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~   58 (302)
T TIGR01188        19 GEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVV   58 (302)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence            33444558899999999999999988  67778887665543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.80  E-value=0.0058  Score=58.31  Aligned_cols=56  Identities=18%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~   90 (294)
                      ...++.|.+.+..  ....+..+.|..|+|||+++..++...+  .. |.+|+++.++...
T Consensus        14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~~   72 (509)
T PRK09302         14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEESP   72 (509)
T ss_pred             cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCCH
Confidence            4677888887743  3466777789999999999999998777  55 9999999998653

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.80  E-value=0.0021  Score=52.81  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcC----------CCCcEEEEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSN----------ESVDVGVLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~----------~g~~VlliD~D~~~   90 (294)
                      ..+.++.+.+|+||||++..+|..++  .          .+.+|++++++...
T Consensus        32 g~l~~i~g~~g~GKT~~~~~l~~~~~--~g~~~~g~~~~~~~~Vl~i~~E~~~   82 (193)
T PF13481_consen   32 GELTLIAGPPGSGKTTLALQLAAALA--TGRPFLGELPPRPGRVLYISLEDSE   82 (193)
T ss_dssp             TSEEEEEECSTSSHHHHHHHHHHHHH--T---TT---------EEEEESSS-H
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHH--hCCccCCcccccCceEEEEeccCCH
Confidence            45888889999999999999999999  5          67899999998754

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=96.79  E-value=0.054  Score=45.97  Aligned_cols=193  Identities=15%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC-hhhhccccccc--ccc-cc---------CCCCcce--eccC
Q psy11347         55 GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS-MPRMMGLLNEQ--VHQ-SA---------SGWSPVF--LEEN  119 (294)
Q Consensus        55 ~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~-l~~~lg~~~~~--~~~-~~---------~~~~~~~--~~~~  119 (294)
                      .-+|.||=..|+.++..|.  .+|++|..+..||.-+- ...+-.....+  +.. +.         +++....  ..+|
T Consensus         9 v~s~lgkgi~~as~g~ll~--~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~n   86 (255)
T cd03113           9 VVSSLGKGITAASLGRLLK--ARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNN   86 (255)
T ss_pred             cccCcchHHHHHHHHHHHH--HCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccC
Confidence            3468999999999999999  99999999999986421 00111111111  111 00         0111100  0111


Q ss_pred             eEE-------Ee--cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh----HHHHHHHHhhcC-
Q psy11347        120 LSV-------MS--IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD----EHLSLVQYLKGL-  185 (294)
Q Consensus       120 l~~-------~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~----~~~~~~~~l~~~-  185 (294)
                      +.-       +.  ......+..   ...-+-....+++.+..+....++|++|++.++..++    .+++.+.++... 
T Consensus        87 iTtGkiy~~vi~kER~G~ylG~T---VQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~  163 (255)
T cd03113          87 ITTGKIYSSVIEKERRGDYLGKT---VQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLEL  163 (255)
T ss_pred             cChHHHHHHHHHHhhccCccCce---EEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHh
Confidence            110       00  000000000   0001122235566666655334599999999977643    344444444221 


Q ss_pred             CC-cEE-----EEecC--CchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCc
Q psy11347        186 PD-IGA-----IVVTT--PQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVP  257 (294)
Q Consensus       186 ~a-d~v-----liv~~--~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~  257 (294)
                      .. +.+     ++|.-  .....-.-+...++.++..|+...++|.|.-++          +.   .+..+.+...-+++
T Consensus       164 g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~p----------L~---e~~keKIAlFcnVp  230 (255)
T cd03113         164 GRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKP----------LP---PEIREKIALFCDVP  230 (255)
T ss_pred             CcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCC----------Cc---hHHHHHHHHhcCCC
Confidence            22 222     22322  223333457888999999999999999988321          11   22334444445788


Q ss_pred             eeeccCCC
Q psy11347        258 FLGSVPID  265 (294)
Q Consensus       258 ~l~~Ip~~  265 (294)
                      ..++|+..
T Consensus       231 ve~VI~~~  238 (255)
T cd03113         231 PEAVISAP  238 (255)
T ss_pred             HHHeeecC
Confidence            77766643

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.78  E-value=0.0042  Score=53.56  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~   70 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE   70 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence            334555559999999999999999988  67778877665543

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.78  E-value=0.0094  Score=54.39  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ++++|.|+ |..|+||||+...|...|.  .+|++|.+|-.|..
T Consensus       204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~--~~g~~v~~iKh~~h  244 (366)
T PRK14489        204 APPLLGVV-GYSGTGKTTLLEKLIPELI--ARGYRIGLIKHSHH  244 (366)
T ss_pred             CccEEEEe-cCCCCCHHHHHHHHHHHHH--HcCCEEEEEEECCc
Confidence            46677776 5788999999999999999  89999999987654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.78  E-value=0.0011  Score=59.77  Aligned_cols=39  Identities=23%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...|+..+.  .....|.+.+.|..
T Consensus        68 ei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~  106 (340)
T PRK13536         68 ECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVP  106 (340)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence            3444558999999999999999998  77778888776654

>PRK05973 replicative DNA helicase; Provisional

Probab=96.78  E-value=0.0022  Score=54.63  Aligned_cols=43  Identities=16%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.+++|..|+|||+++.++|...+  ..|.+|+++.++...
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes~  104 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYTE  104 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCCH
Confidence            3566888899999999999999999998  779999999998653

>PRK13351 elongation factor G; Reviewed

Probab=96.77  E-value=0.015  Score=57.66  Aligned_cols=86  Identities=19%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+++|++............+..+...+.+.+ +++|+.+..      .   
T Consensus        73 ~~i~liDtPG~~d-f~~~~~~~l--~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~------~---  139 (687)
T PRK13351         73 HRINLIDTPGHID-FTGEVERSL--RVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRV------G---  139 (687)
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCC------C---
Confidence            8899999996532 222233334  57899999998876555556677777777788854 799998831      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                       .+....++++.+.++.+..
T Consensus       140 -~~~~~~~~~i~~~l~~~~~  158 (687)
T PRK13351        140 -ADLFKVLEDIEERFGKRPL  158 (687)
T ss_pred             -CCHHHHHHHHHHHHCCCeE
Confidence             2234566777777776554

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.76  E-value=0.0015  Score=54.67  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ..+.+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~   64 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDV   64 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            344555559999999999999999987  6677787755443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd01882 BMS1 Bms1

Probab=96.75  E-value=0.021  Score=48.40  Aligned_cols=63  Identities=6%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..++++|+|+.+    ..++..+  ..+|.++++++...........++..+...+.+.+.+|+|+.|.
T Consensus        83 ~~i~~vDtPg~~----~~~l~~a--k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~  145 (225)
T cd01882          83 RRLTFIECPNDI----NAMIDIA--KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL  145 (225)
T ss_pred             ceEEEEeCCchH----HHHHHHH--HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            568999999644    2233333  57899999988765444445667777777787765579999883

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK08233 hypothetical protein; Provisional

Probab=96.75  E-value=0.0019  Score=52.48  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=26.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|.+|+||||+|..|+..|.  .  ..++..|.+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~--~--~~~~~~d~~~   39 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK--N--SKALYFDRYD   39 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC--C--CceEEECCEE
Confidence            4444455669999999999999887  3  3677777764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.74  E-value=0.0013  Score=55.18  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i   65 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDV   65 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence            344555558999999999999999988  6677787655443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.74  E-value=0.0053  Score=49.96  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=28.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g   63 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDG   63 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECC
Confidence            344556669999999999999999988  6666776543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.73  E-value=0.01  Score=50.04  Aligned_cols=53  Identities=19%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC------CcEEEEecCCC
Q psy11347         35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES------VDVGVLDLDIC   89 (294)
Q Consensus        35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g------~~VlliD~D~~   89 (294)
                      .++.|...+..  ....+..+.|..|+|||+++..+|....  ..+      .+|+++|.+..
T Consensus         4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~   64 (226)
T cd01393           4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGA   64 (226)
T ss_pred             CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCC
Confidence            34555555542  3456777778999999999999999987  666      89999999753

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.0051  Score=58.61  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  .  ...+|.+-+.+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~   71 (506)
T PRK13549         30 AGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYEGEIIFEGEEL   71 (506)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEEC
Confidence            444556669999999999999999877  4  466787755554

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.72  E-value=0.003  Score=61.43  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..++++ |.+|+||||+...|+..+.  ..+.+|.+-+.|..
T Consensus       367 Ge~iaIv-G~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~  406 (592)
T PRK10790        367 RGFVALV-GHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLS  406 (592)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcccC--CCCceEEECCEEhh
Confidence            4555555 8899999999999999999  77778887666554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.72  E-value=0.0014  Score=54.76  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~   62 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGK   62 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCC
Confidence            444555569999999999999999887  66667765443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.70  E-value=0.009  Score=51.03  Aligned_cols=54  Identities=24%  Similarity=0.219  Sum_probs=42.3

Q ss_pred             ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .++.|.+.+..  ....+..+.|..|+|||+++..++....  ..|.+|+++.++...
T Consensus         6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~~   61 (237)
T TIGR03877         6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEHP   61 (237)
T ss_pred             CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCCH
Confidence            45556655543  3566778889999999999999998877  689999999998643

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.70  E-value=0.0022  Score=55.02  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      -.++.|++|+|||+++.++|..+.  ..|++|+++++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~  135 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV  135 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH
Confidence            577889999999999999999999  88999999965

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=96.70  E-value=0.0067  Score=56.53  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch--hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE--VSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~--~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.-. ..-.+...+  ..+|.+++|++.+.  .-.......+..+...+.+.+.+++|++|.
T Consensus        84 ~~i~liDtpG~~~-~~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl  151 (425)
T PRK12317         84 YYFTIVDCPGHRD-FVKNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA  151 (425)
T ss_pred             eEEEEEECCCccc-chhhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence            8999999996432 111222223  57999999988765  222334455556666676667789999984

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=96.69  E-value=0.0026  Score=63.20  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..++++ |++|+||||+...|+..+.  ....++++-+.|..
T Consensus       500 G~~vaIv-G~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~  539 (708)
T TIGR01193       500 NSKTTIV-GMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLK  539 (708)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHH
Confidence            4555555 8999999999999999999  77888888666654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK15453 phosphoribulokinase; Provisional

Probab=96.69  E-value=0.003  Score=54.91  Aligned_cols=41  Identities=20%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..+|+| .|.+|+||||++..|+..|.  ..+.++.+++.|...
T Consensus         5 ~piI~I-tG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh   45 (290)
T PRK15453          5 HPIIAV-TGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFH   45 (290)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHh--hcCCCeEEEeccccc
Confidence            445555 58889999999999999999  778889999999754

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.69  E-value=0.0032  Score=52.56  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=34.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+|||+++..++....  ..|.+|+++|++.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~   50 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG   50 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC
Confidence            355667778999999999999999998  7899999999974

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=96.69  E-value=0.0074  Score=57.31  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   62 (491)
T PRK10982         23 PHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEI   62 (491)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEEC
Confidence            344555569999999999999999988  6677777655443

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.68  E-value=0.0027  Score=54.90  Aligned_cols=40  Identities=25%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   65 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPV   65 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            344555559999999999999999887  6677787644443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.0047  Score=51.22  Aligned_cols=44  Identities=34%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-----CcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-----VDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-----~~VlliD~D~~~~~   92 (294)
                      .+.|+.+-|.+|+||||+...|-+.--  ...     .+|++-+-|...+.
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmnd--l~~~~r~~G~v~~~g~ni~~~~   80 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMND--LIPGARVEGEVLLDGKNIYDPK   80 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhcc--cCcCceEEEEEEECCeeccCCC
Confidence            444555558899999999999988765  322     46777777766553

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.67  E-value=0.003  Score=61.04  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=32.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ......+.|+.|+||||+...|+..+.  ....+|.+-+.|..
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~  397 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLA  397 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHH
Confidence            333444559999999999999999999  78888988776644

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.67  E-value=0.0022  Score=57.53  Aligned_cols=71  Identities=24%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV  122 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~  122 (294)
                      ...+..+-|.+|+||||+-..+|..-.  ..+.++.+-+-|...   .-.-..+...++++.+.++++...+|+-+
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~---lpp~kR~ig~VFQ~YALFPHltV~~NVaf  100 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITD---VPPEKRPIGMVFQSYALFPHMTVEENVAF  100 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCC---CChhhcccceeecCcccCCCCcHHHHhhh
Confidence            334555568899999999999999999  889999998888754   11111223356677777777777766544

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.67  E-value=0.0015  Score=59.39  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-|...
T Consensus        18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~   59 (363)
T TIGR01186        18 KGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMK   59 (363)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence            444566669999999999999999999  788888876655543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04110 Rab35 Rab35 subfamily

Probab=96.67  E-value=0.046  Score=45.17  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC-CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN-IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+ ..++..+..++..+.... ...+.+|.|++|.
T Consensus        55 ~~l~l~D~~G~~~~~~~-~~~~~--~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl  122 (199)
T cd04110          55 VKLQIWDTAGQERFRTI-TSTYY--RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEEEEeCCCchhHHHH-HHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            56889999864321111 11222  5688888888774 477777777777776532 2235688899884

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.66  E-value=0.0027  Score=53.89  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   64 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDI   64 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence            344555558999999999999999998  7777887755444

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.65  E-value=0.0021  Score=54.78  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i   65 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDL   65 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEc
Confidence            334555558999999999999999888  6677787755443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.65  E-value=0.0018  Score=54.56  Aligned_cols=40  Identities=28%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~   64 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDV   64 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence            344555559999999999999999887  6666777654443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.65  E-value=0.0063  Score=50.65  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   64 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPI   64 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEh
Confidence            344555669999999999999999988  6677777655443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.64  E-value=0.0031  Score=58.12  Aligned_cols=41  Identities=32%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~   93 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIA   93 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECC
Confidence            344566669999999999999999998  77778877655543

>PRK10908 cell division protein FtsE; Provisional

Probab=96.64  E-value=0.0019  Score=54.47  Aligned_cols=40  Identities=25%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i   66 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDI   66 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence            334555558999999999999999887  6677777654443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.64  E-value=0.0019  Score=54.42  Aligned_cols=39  Identities=28%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~   67 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEP   67 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence            344555569999999999999999887  666777664433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=96.63  E-value=0.0043  Score=61.68  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..++++ |++|+||||+...|+..+.  ..+.+|++-+.|.
T Consensus       507 Ge~vaIv-G~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i  545 (711)
T TIGR00958       507 GEVVALV-GPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL  545 (711)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence            4555555 8999999999999999999  7788888755554

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.63  E-value=0.005  Score=50.35  Aligned_cols=41  Identities=39%  Similarity=0.448  Sum_probs=34.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+.++.|..|+||||++..|+..+.  ..|..+.++|.|.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~   56 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDN   56 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChH
Confidence            3455667778889999999999999998  7888889998775

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK05748 replicative DNA helicase; Provisional

Probab=96.63  E-value=0.0021  Score=60.28  Aligned_cols=57  Identities=18%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.|...+... ...+.++++..|+|||+++.++|...+ ...|.+|+++-+....
T Consensus       187 ~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a-~~~g~~v~~fSlEms~  244 (448)
T PRK05748        187 PTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVA-TKTDKNVAIFSLEMGA  244 (448)
T ss_pred             cCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHH-HhCCCeEEEEeCCCCH
Confidence            45566666655543 566889999999999999999999987 1459999999887654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.63  E-value=0.0023  Score=57.76  Aligned_cols=39  Identities=26%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus        32 ei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~   70 (343)
T TIGR02314        32 QIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT   70 (343)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence            3444458999999999999999998  77788887666553

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd00880 Era_like Era (E

Probab=96.62  E-value=0.024  Score=43.85  Aligned_cols=66  Identities=18%  Similarity=0.066  Sum_probs=41.6

Q ss_pred             ccEEEEcCCCCCChHH------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEH------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++++++|+|+......      ......+  ..+|.++++++...........++......+.+ ..+|+|+++.
T Consensus        45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~  116 (163)
T cd00880          45 GPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDL  116 (163)
T ss_pred             CcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence            7999999996332110      1111222  578988988888775544444445555556666 4599999884

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.62  E-value=0.0021  Score=55.33  Aligned_cols=36  Identities=44%  Similarity=0.749  Sum_probs=32.2

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .++.|-.|+||||+|..|+..+.  ..+.+|.+++.|.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~--~~~~~v~~i~~D~   37 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS--EKNIDVIILGTDL   37 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH--HcCCceEEEccHH
Confidence            56779999999999999999999  7889999998774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=96.62  E-value=0.0059  Score=58.50  Aligned_cols=41  Identities=27%  Similarity=0.426  Sum_probs=33.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |+.|+||||+...|+..+.  ....+|.+-+.|...
T Consensus       348 G~~~~iv-G~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~  388 (529)
T TIGR02857       348 GERVALV-GPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLAD  388 (529)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhh
Confidence            4555555 8999999999999999999  778889887766544

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.62  E-value=0.0018  Score=54.51  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~   69 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSL   69 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence            344555559999999999999999988  7777887655444

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.62  E-value=0.003  Score=48.26  Aligned_cols=41  Identities=37%  Similarity=0.493  Sum_probs=29.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~~   89 (294)
                      .+.+.++.|..|+|||+++..++..+.  ..     ..+|+.+++...
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   48 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLN--AEAEIKNHPDVIYVNCPSS   48 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHH--HHHHHCCCEEEEEEEHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhH--HhhhccCCCcEEEEEeCCC
Confidence            345778889999999999999999987  43     667888877543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.61  E-value=0.0033  Score=54.38  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347        161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF  240 (294)
Q Consensus       161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~  240 (294)
                      -|--+|+|+..+. .-.++.-.  +.+|..|+|+..+...+-.+...+-+.++.|++.+-+++|+++..     ...++.
T Consensus        76 hyahVDcPGHaDY-vKNMItgA--aqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv-----dd~ell  147 (394)
T COG0050          76 HYAHVDCPGHADY-VKNMITGA--AQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV-----DDEELL  147 (394)
T ss_pred             eEEeccCCChHHH-HHHHhhhH--HhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc-----CcHHHH
Confidence            4678899965532 12222222  578999999988888888888888888999999999999999864     334444


Q ss_pred             CCCchhHHHHHhhcCCc
Q psy11347        241 PKDSGGAEKMCAELSVP  257 (294)
Q Consensus       241 ~~~~~~~~~~~~~~g~~  257 (294)
                      .-....+.++++.++++
T Consensus       148 elVemEvreLLs~y~f~  164 (394)
T COG0050         148 ELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            44445566777777766

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.61  E-value=0.014  Score=46.88  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=27.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~   60 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGM   60 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence            444555558999999999999999988  66666654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG0066|consensus

Probab=96.60  E-value=0.011  Score=53.97  Aligned_cols=88  Identities=22%  Similarity=0.254  Sum_probs=52.7

Q ss_pred             HHHHHHHhhccCCCccEEEEcCCCCC-ChHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEe
Q psy11347        146 MIRQFLSEVDWGNGLEYLLIDTPPGT-SDEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVE  223 (294)
Q Consensus       146 ~l~~~l~~l~~~~~yd~IiiD~p~~~-~~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvv  223 (294)
                      ..+-.+.+|.... +|++|+|.|... +-+.+. +..++.+ .-..||+|+...           +++.+.+.. ++||-
T Consensus       710 KaRValaeLal~~-PDvlILDEPTNNLDIESIDALaEAIne-y~GgVi~VsHDe-----------RLi~eT~C~-LwVvE  775 (807)
T KOG0066|consen  710 KARVALAELALGG-PDVLILDEPTNNLDIESIDALAEAINE-YNGGVIMVSHDE-----------RLIVETDCN-LWVVE  775 (807)
T ss_pred             hHHHHHHHHhcCC-CCEEEecCCCCCcchhhHHHHHHHHHh-ccCcEEEEeccc-----------ceeeecCce-EEEEc
Confidence            4556666666555 999999999654 322232 2333332 445577777542           222334444 67888


Q ss_pred             ccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347        224 NMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV  256 (294)
Q Consensus       224 N~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~  256 (294)
                      |+         ...+|..++.+.-+++++.+|-
T Consensus       776 ~Q---------~i~eIdGdFeDYkkEVLdaLGE  799 (807)
T KOG0066|consen  776 NQ---------GIDEIDGDFEDYKKEVLDALGE  799 (807)
T ss_pred             cC---------ChhhccccHHHHHHHHHHHHHH
Confidence            87         4456666677777777777664

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.60  E-value=0.0085  Score=49.73  Aligned_cols=40  Identities=28%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+  .  ....+|.+-+-+.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--p~~G~i~~~g~~~   66 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGHPKYE--VTEGEILFKGEDI   66 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCccEEEECCEEC
Confidence            33455555899999999999999984  4  4556777654443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.60  E-value=0.0022  Score=55.89  Aligned_cols=39  Identities=28%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~   87 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQD   87 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence            344555569999999999999999998  667777764443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=96.58  E-value=0.0068  Score=57.73  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  .....|.+-+.+.
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~   68 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV   68 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            344555559999999999999999998  6677787655444

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.58  E-value=0.0012  Score=55.14  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   64 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSY   64 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcc
Confidence            344555668999999999999999888  6677787655543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=96.58  E-value=0.0053  Score=61.04  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=33.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |+.|+||||+...|+..+.  ....+|.+-+.|...
T Consensus       505 Ge~vaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~  545 (710)
T TIGR03796       505 GQRVALV-GGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREE  545 (710)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHH
Confidence            5556665 8999999999999999999  778888887666543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.57  E-value=0.0038  Score=52.21  Aligned_cols=40  Identities=35%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   65 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDL   65 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence            344555559999999999999999988  6667777654443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.56  E-value=0.0018  Score=53.97  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   61 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKE   61 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence            3445558999999999999999988  666777765544

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.55  E-value=0.019  Score=45.08  Aligned_cols=35  Identities=31%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~   59 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTW   59 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEE
Confidence            444555568999999999999999887  55666654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=96.55  E-value=0.016  Score=56.45  Aligned_cols=66  Identities=14%  Similarity=0.069  Sum_probs=46.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .-+.|+|+|+.- ...-.+...+  ..+|.+++|++.+..-...+...+..+...+.+.+.+|+|++|.
T Consensus        51 ~~i~~IDtPGhe-~fi~~m~~g~--~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl  116 (614)
T PRK10512         51 RVLGFIDVPGHE-KFLSNMLAGV--GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR  116 (614)
T ss_pred             cEEEEEECCCHH-HHHHHHHHHh--hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            457899999642 1112233333  57999999998877666677777788888888876799999983

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=96.55  E-value=0.0069  Score=57.66  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i   68 (501)
T PRK11288         29 AGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM   68 (501)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence            344555558999999999999999887  6677787765554

>PRK08006 replicative DNA helicase; Provisional

Probab=96.55  E-value=0.003  Score=59.44  Aligned_cols=58  Identities=19%  Similarity=0.340  Sum_probs=45.1

Q ss_pred             CCcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         32 VDPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        32 ~~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .....+.|...+.. ...-+.++++..|+|||+++.++|..++ ...|++|+++-+....
T Consensus       207 i~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a-~~~g~~V~~fSlEM~~  265 (471)
T PRK08006        207 VNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAA-MLQDKPVLIFSLEMPG  265 (471)
T ss_pred             ccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCeEEEEeccCCH
Confidence            34556667765544 3567899999999999999999999987 2358999999887643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.54  E-value=0.0028  Score=55.24  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~   70 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGEN   70 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence            344555669999999999999999987  666777765443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.54  E-value=0.0037  Score=60.73  Aligned_cols=40  Identities=38%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..++++ |++|+||||+...|+..+.  .....|.+-+.|..
T Consensus       361 G~~v~Iv-G~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~  400 (588)
T PRK13657        361 GQTVAIV-GPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIR  400 (588)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhh
Confidence            4445555 8999999999999999999  77777877665554

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.53  E-value=0.0032  Score=53.81  Aligned_cols=40  Identities=30%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   65 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKV   65 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334555559999999999999999988  6677777655443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.53  E-value=0.0032  Score=52.71  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   64 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKL   64 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence            344555569999999999999999988  6677787655443

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.52  E-value=0.051  Score=47.26  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .+-+.+++|..|+||||+...+...+.  ..+.+++.++
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiE  115 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVE  115 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEEC
Confidence            455778889999999999999988888  6677888875

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.52  E-value=0.0065  Score=46.64  Aligned_cols=52  Identities=27%  Similarity=0.278  Sum_probs=40.3

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+...+........++.|..|+||||++..++..+.  ..+.+|..+++...
T Consensus         7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~   58 (151)
T cd00009           7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL   58 (151)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence            34445555444556677789999999999999999998  78889999988653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.51  E-value=0.0025  Score=56.57  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+.+.+.
T Consensus        30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   68 (303)
T TIGR01288        30 GECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV   68 (303)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            33455558999999999999999888  6677887765554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.51  E-value=0.0041  Score=53.16  Aligned_cols=40  Identities=25%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   66 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA   66 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334555559999999999999999887  6667777655443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.50  E-value=0.005  Score=57.18  Aligned_cols=74  Identities=20%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCC
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGW  111 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~  111 (294)
                      .|+...|.=.+.. +..++++ |.+|+||||++..|-....  .....|-+=..|..+.+ ...||.+..|+++....+
T Consensus       349 ~pil~~isF~l~~-G~~lgII-GPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd-~e~lG~hiGYLPQdVeLF  422 (580)
T COG4618         349 KPILKGISFALQA-GEALGII-GPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWD-REQLGRHIGYLPQDVELF  422 (580)
T ss_pred             CcceecceeEecC-CceEEEE-CCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCC-HHHhccccCcCcccceec
Confidence            3444444433333 5667777 7788999999999999999  88889998888877665 567888888877765444

>TIGR00436 era GTP-binding protein Era

Probab=96.50  E-value=0.018  Score=50.21  Aligned_cols=65  Identities=11%  Similarity=-0.028  Sum_probs=41.1

Q ss_pred             ccEEEEcCCCCCCh--HHH-----HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD--EHL-----SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~--~~~-----~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+-...  ...     .....+  ..+|.++++++.+...... ..++..+...+.+ ..+|+|++|.
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl  119 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDN  119 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeC
Confidence            67899999964321  110     112233  5799999999887643322 5556666666666 4589999984

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.50  E-value=0.0048  Score=52.27  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  .....|.+-+.+.
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~   74 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL   74 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence            344555559999999999999999987  6677777654443

>PRK08506 replicative DNA helicase; Provisional

Probab=96.50  E-value=0.0015  Score=61.48  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=45.1

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+... ...+.++++..|+|||+++.++|...+  ..|++|+++-+....
T Consensus       176 ~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~--~~g~~V~~fSlEMs~  232 (472)
T PRK08506        176 DTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL--NQDKGVAFFSLEMPA  232 (472)
T ss_pred             cCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH--hcCCcEEEEeCcCCH
Confidence            34566666655443 566899999999999999999999998  789999999888653

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.50  E-value=0.0044  Score=52.00  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   60 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTV   60 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEe
Confidence            6677779999999999999999988  667788765544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.50  E-value=0.007  Score=51.44  Aligned_cols=40  Identities=30%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   63 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDH   63 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeec
Confidence            444555559999999999999999988  6777887655443

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.0047  Score=51.94  Aligned_cols=42  Identities=21%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.+-|.+|+||||+-..|+...-  .....|.+-+.+...
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~   70 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITK   70 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhc
Confidence            344555558899999999999999766  666788888877654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=96.49  E-value=0.0024  Score=58.26  Aligned_cols=40  Identities=25%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...||..+.  ....+|.+-+.+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i   67 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM   67 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334555558999999999999999988  6777887765554

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.49  E-value=0.0037  Score=54.85  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~   72 (279)
T PRK13635         33 GEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS   72 (279)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence            33445558899999999999999998  77778888666553

>PRK06321 replicative DNA helicase; Provisional

Probab=96.48  E-value=0.0034  Score=59.04  Aligned_cols=57  Identities=12%  Similarity=0.289  Sum_probs=44.1

Q ss_pred             CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|.+.+... ...+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus       210 ~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a-~~~g~~v~~fSLEMs~  267 (472)
T PRK06321        210 PTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFC-FQNRLPVGIFSLEMTV  267 (472)
T ss_pred             ccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHH-HhcCCeEEEEeccCCH
Confidence            34456666666544 457889999999999999999999987 2358899999887643

>cd04155 Arl3 Arl3 subfamily

Probab=96.48  E-value=0.086  Score=42.11  Aligned_cols=65  Identities=14%  Similarity=0.061  Sum_probs=36.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHH----hcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCR----KVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~----~~~~~~~~vvvN~~~~  228 (294)
                      +++.++|+|+.... .......+  ..+|.++++.+... .++......+..+.    ..+.+ +.+++|+.|.
T Consensus        58 ~~~~~~D~~G~~~~-~~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~  127 (173)
T cd04155          58 FKLNVWDIGGQRAI-RPYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDL  127 (173)
T ss_pred             EEEEEEECCCCHHH-HHHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCC
Confidence            67889999854321 11112222  57888888887654 34444444444332    22344 5677899873

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.0034  Score=57.04  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.+..
T Consensus        31 e~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~   69 (356)
T PRK11650         31 EFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN   69 (356)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence            3455558899999999999999988  77778877665543

>cd04127 Rab27A Rab27a subfamily

Probab=96.47  E-value=0.11  Score=41.90  Aligned_cols=89  Identities=19%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC---CCeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN---IPIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~~~~~~~~  235 (294)
                      +.+-|+|+|+...  ......... ..+|.++++.+.+ ..++..+..++..+....   ...+.+|.|+.|..     .
T Consensus        63 ~~~~i~Dt~G~~~--~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-----~  134 (180)
T cd04127          63 IHLQLWDTAGQER--FRSLTTAFF-RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-----D  134 (180)
T ss_pred             EEEEEEeCCChHH--HHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-----h
Confidence            6788999996322  111212111 5789899888775 477777877777775432   22366889999842     1


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...+.   .+..+++.+..+.+++
T Consensus       135 ~~~v~---~~~~~~~~~~~~~~~~  155 (180)
T cd04127         135 QRQVS---EEQAKALADKYGIPYF  155 (180)
T ss_pred             cCccC---HHHHHHHHHHcCCeEE
Confidence            11222   2345667666666544

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.47  E-value=0.0078  Score=49.86  Aligned_cols=38  Identities=34%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+.++.|..|+||||+...++..+.  ..|++|+++-.
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~--~~g~~v~~~ap   54 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALE--AAGKRVIGLAP   54 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHH--HTT--EEEEES
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEECC
Confidence            445677778899999999999999999  78999988844

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.47  E-value=0.017  Score=47.10  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~   58 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEW   58 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEE
Confidence            444555569999999999999999988  66777765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.47  E-value=0.0051  Score=50.81  Aligned_cols=37  Identities=30%  Similarity=0.517  Sum_probs=29.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCc----EEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVD----VGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~----VlliD~D~   88 (294)
                      |..++|.+|+||||+|..|+..|.  ..+..    +.++..|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~   41 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDD   41 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecc
Confidence            455678999999999999999999  77776    66665553

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd01864 Rab19 Rab19 subfamily

Probab=96.47  E-value=0.023  Score=45.17  Aligned_cols=66  Identities=17%  Similarity=0.131  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+..... ......+  ..+|.++++.+.+. .++..+..++..+.....  ..+-+|.|++|.
T Consensus        52 ~~l~i~D~~G~~~~~-~~~~~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  120 (165)
T cd01864          52 VKLQIWDTAGQERFR-TITQSYY--RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL  120 (165)
T ss_pred             EEEEEEECCChHHHH-HHHHHHh--ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            678999999743211 1112222  57899998887766 567777777777765432  135688999984

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.47  E-value=0.0041  Score=51.43  Aligned_cols=40  Identities=28%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+  .  ....+|.+-+-+.
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~   75 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPL   75 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeC
Confidence            44455666999999999999999998  7  6667787655444

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.46  E-value=0.006  Score=51.13  Aligned_cols=39  Identities=31%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   61 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQS   61 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence            444555569999999999999999988  677788764444

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PF13245 AAA_19: Part of AAA domain

Probab=96.46  E-value=0.0055  Score=42.50  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCC----CCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE----SVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~----g~~VlliD~   86 (294)
                      .-+.++.+..|+|||+++.+++..+.  ..    +.+|+++-.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~--~~~~~~~~~vlv~a~   50 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL--AARADPGKRVLVLAP   50 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCCCeEEEECC
Confidence            44677789999999988888777776  44    889999844

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0025  Score=59.42  Aligned_cols=41  Identities=32%  Similarity=0.489  Sum_probs=34.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..|+++ |++|+||||+...++.++.  ....++.+-+.+...
T Consensus       364 GEkvAIl-G~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~  404 (573)
T COG4987         364 GEKVAIL-GRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIAS  404 (573)
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhh
Confidence            6677777 8999999999999999999  778889888877643

>cd04109 Rab28 Rab28 subfamily

Probab=96.46  E-value=0.095  Score=43.88  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=43.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-----CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-----IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-----~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+++.-..  ........ ..+|.+|++.+.+. .++..+..++..+.+..     ...+.+|.|+.|.
T Consensus        50 ~~~~i~Dt~G~~~~--~~l~~~~~-~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL  121 (215)
T cd04109          50 VTLQVWDIGGQSIG--GKMLDKYI-YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL  121 (215)
T ss_pred             EEEEEEECCCcHHH--HHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence            67889999863221  11222111 58999999987665 57777777777776542     1246788999984

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.45  E-value=0.0055  Score=51.19  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..++|.+|+||||++..|+..+.    +.++.+++.|..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~   43 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSY   43 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcc
Confidence            345666678999999999999999885    457888988864

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.01  Score=50.10  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +.+++++ |.+|+||||++..||....  .....|.+-+-
T Consensus        33 Ge~lgiv-GeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~   69 (252)
T COG1124          33 GETLGIV-GESGSGKSTLARLLAGLEK--PSSGSILLDGK   69 (252)
T ss_pred             CCEEEEE-cCCCCCHHHHHHHHhcccC--CCCceEEECCc
Confidence            5566666 7889999999999999999  76777766543

>PTZ00416 elongation factor 2; Provisional

Probab=96.45  E-value=0.043  Score=55.53  Aligned_cols=66  Identities=18%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +|.+.++|+|+... ..-.+..++  ..+|.+|+|++....-...+..+++.+.+.+.+. -+++|++|.
T Consensus        91 ~~~i~liDtPG~~~-f~~~~~~al--~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~-iv~iNK~D~  156 (836)
T PTZ00416         91 PFLINLIDSPGHVD-FSSEVTAAL--RVTDGALVVVDCVEGVCVQTETVLRQALQERIRP-VLFINKVDR  156 (836)
T ss_pred             ceEEEEEcCCCHHh-HHHHHHHHH--hcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCE-EEEEEChhh
Confidence            37899999996543 223344444  6899999999887766667788888888888775 588999984

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.44  E-value=0.0078  Score=49.06  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~   63 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDL   63 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            334555558999999999999999988  6677787654444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=96.44  E-value=0.0062  Score=53.45  Aligned_cols=170  Identities=15%  Similarity=0.242  Sum_probs=95.0

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      .+++|.++++..-+||=|.+..|...+.  ++|.++.++-+..++    .+. ..                 .++     
T Consensus       111 ~~~rv~~vGTDcavGK~tTal~L~~~l~--~~G~~a~fvaTGQTG----imi-a~-----------------~Gv-----  161 (301)
T PF07755_consen  111 KAKRVLTVGTDCAVGKMTTALELRRALR--ERGINAGFVATGQTG----IMI-AG-----------------YGV-----  161 (301)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHH--HTT--EEEEE-SHHH----HHC-HS-----------------EC------
T ss_pred             CCCEEEEEccCccccHHHHHHHHHHHHH--HcCCCceEEecCCce----EEE-ec-----------------CCe-----
Confidence            5899999999999999999999999999  899999999885432    111 10                 000     


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH-H-HHHHhhcCCCcEEEEecCCchhh---
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL-S-LVQYLKGLPDIGAIVVTTPQEVS---  200 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~-~-~~~~l~~~~ad~vliv~~~~~~s---  200 (294)
                        .+..      .........+..++-.... + .|+|||..-+++..+.. . .+..|.....|.+|+.-.+....   
T Consensus       162 --~iDa------v~~DFvaGavE~~v~~~~~-~-~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~  231 (301)
T PF07755_consen  162 --PIDA------VPSDFVAGAVEALVPEAAE-E-HDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDG  231 (301)
T ss_dssp             ---GGG------SBGGGHHHHHHHHHHHHCC-C--SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TT
T ss_pred             --eccc------hhhhhHHHHHHHHHHhhCc-C-CCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccC
Confidence              0000      0122233456666666653 4 69999999976643321 1 34444456899999888883322   


Q ss_pred             -----HHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347        201 -----LLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI  264 (294)
Q Consensus       201 -----~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~  264 (294)
                           +-.....++.++..     ..+++++-+|-...      .    ..+....++++.+++|+|+.-.+.+
T Consensus       232 ~p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l------~----~~e~~~~~~~~~~e~glPv~Dp~r~  295 (301)
T PF07755_consen  232 FPHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGL------S----EEEAKAAIERIEEELGLPVTDPLRF  295 (301)
T ss_dssp             STTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS-----------HHHHHHHHHHHHHHH-S-EE-HHHH
T ss_pred             CCcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCC------C----HHHHHHHHHHHHHHHCCCeeecccC
Confidence                 23344455555433     23488999998542      1    1123456678888899998865543

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.44  E-value=0.1  Score=41.04  Aligned_cols=89  Identities=18%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.++|+|+..... ......+  ..+|.++++.+... .++..+..++..+....  -..+.+|.|+.+..     ..
T Consensus        49 ~~~~l~D~~G~~~~~-~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~-----~~  120 (164)
T smart00175       49 VKLQIWDTAGQERFR-SITSSYY--RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE-----DQ  120 (164)
T ss_pred             EEEEEEECCChHHHH-HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-----cc
Confidence            578899999643211 1112222  57999998887765 57777777777765432  22467889998832     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+.++++.+..+.+++
T Consensus       121 ~~~---~~~~~~~~~~~~~~~~~  140 (164)
T smart00175      121 RQV---SREEAEAFAEEHGLPFF  140 (164)
T ss_pred             cCC---CHHHHHHHHHHcCCeEE
Confidence            111   13345566666666543

Rab GTPases are implicated in vesicle trafficking.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.44  E-value=0.0033  Score=47.41  Aligned_cols=24  Identities=46%  Similarity=0.677  Sum_probs=20.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..||..+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            457789999999999999998775

...

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.046  Score=48.04  Aligned_cols=174  Identities=16%  Similarity=0.205  Sum_probs=108.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++++++++.--+||=|.+..|...+.  ..|+++..+-+...+-    +.                  ...++-+    
T Consensus       148 a~~V~vvGTd~~vGKrTTa~~L~~~~~--e~G~~a~fvaTgqtgi----l~------------------~~~gvvv----  199 (339)
T COG3367         148 AKVVLVVGTDCAVGKRTTALELREAAR--EEGIKAGFVATGQTGI----LI------------------ADDGVVV----  199 (339)
T ss_pred             CcEEEEeccccccchhHHHHHHHHHHH--HhCCccceEecCceee----EE------------------ecCceEe----
Confidence            779999999999999999999999999  8999999998865430    00                  0111111    


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-HHHHHHhhcCCCcEEEEecCCchhhHH---
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-LSLVQYLKGLPDIGAIVVTTPQEVSLL---  202 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~~~~~~l~~~~ad~vliv~~~~~~s~~---  202 (294)
                            +..   ........+..+.-++. ++++|+|+|..-+++..+. --.+..+.....|.+|+.-.|+.....   
T Consensus       200 ------dav---~~DfaAGave~~v~~~~-e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P  269 (339)
T COG3367         200 ------DAV---VMDFAAGAVESAVYEAE-EKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFP  269 (339)
T ss_pred             ------cch---hHHHHHHHHHHHHHHhh-hcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCC
Confidence                  000   01111223444444443 2249999999987664332 223444555789999998888765544   


Q ss_pred             ----HHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        203 ----DVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       203 ----~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                          ....++...... +.+.+++.+|--.-        .+-  ...+...++..++|+|+...+.+.+.+
T Consensus       270 ~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~--------dE~--~are~~a~l~~efglP~~Dp~~~~~d~  330 (339)
T COG3367         270 EPIPPLEEVIALYELLSNAKVVGIALNTRNL--------DEE--EARELCAKLEAEFGLPVTDPLRFGEDV  330 (339)
T ss_pred             CcCCCHHHHHHHHHHccCCcEEEEEeccccc--------ChH--HHHHHHHHHhhccCCccccccccchHH
Confidence                133344444322 47889999987321        110  123445666677899988888877655

>cd01878 HflX HflX subfamily

Probab=96.44  E-value=0.11  Score=42.92  Aligned_cols=67  Identities=13%  Similarity=-0.025  Sum_probs=38.7

Q ss_pred             ccEEEEcCCCCCC---hH----HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTS---DE----HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~---~~----~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      ++++|+|+|+...   ..    .......+  ..+|.++++.+.+. .+......+.+.++..+  ...+.+|+|++|.
T Consensus        89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl  165 (204)
T cd01878          89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEV--AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL  165 (204)
T ss_pred             ceEEEeCCCccccCCCHHHHHHHHHHHHHH--hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence            5789999996422   11    11111112  46898998887764 33344444445554433  2346799999883

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.43  E-value=0.0043  Score=53.55  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=32.7

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+.|.+|+||||++..|+..|.  ..|.+|.+++.|...
T Consensus         3 gItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yy   39 (277)
T cd02029           3 AVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFH   39 (277)
T ss_pred             EEECCCCCCHHHHHHHHHHHHH--hcCCceEEEeccccc
Confidence            3468899999999999999999  789999999999754

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.43  E-value=0.0068  Score=51.66  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~   69 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI   69 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence            444555569999999999999999988  6677787655443

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.43  E-value=0.0041  Score=53.77  Aligned_cols=39  Identities=23%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~   68 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQT   68 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence            344555558999999999999999988  666777765443

>PRK15494 era GTPase Era; Provisional

Probab=96.42  E-value=0.071  Score=48.14  Aligned_cols=65  Identities=20%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             ccEEEEcCCCCCCh------HHHH-HHHHhhcCCCcEEEEecCCchhhHHHH-HHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD------EHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDV-RKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~------~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~-~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++++|+|+....      .... ....+  ..+|.++++++... ++... ..+++.++..+.+.+ +|+|++|.
T Consensus       100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l--~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl  172 (339)
T PRK15494        100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSL--HSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI  172 (339)
T ss_pred             eEEEEEECCCcCCCcccHHHHHHHHHHHHh--hhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence            67899999964221      0111 11123  57999998887643 22222 345666666666654 78899983

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=96.42  E-value=0.0054  Score=55.69  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i   61 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTL   61 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334555569999999999999999988  6677787655443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.41  E-value=0.0081  Score=52.19  Aligned_cols=40  Identities=28%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~   75 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL   75 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence            334555559999999999999999887  6677787655443

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.41  E-value=0.0046  Score=53.15  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   66 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDIT   66 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence            333455558999999999999999887  666677664433

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=96.40  E-value=0.085  Score=52.76  Aligned_cols=89  Identities=17%  Similarity=0.077  Sum_probs=53.8

Q ss_pred             ccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347        160 LEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC  230 (294)
Q Consensus       160 yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~  230 (294)
                      +++.++|+|+..+-         +..-....+....+|.++.|++.+..  .....+..++.+.+.+ .-+++||.|.. 
T Consensus        50 ~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giP-vIvVlNK~Dl~-  125 (772)
T PRK09554         50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIP-CIVALNMLDIA-  125 (772)
T ss_pred             eEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCC-EEEEEEchhhh-
Confidence            78999999964421         11111122222478999999987653  2333455566677777 56899999831 


Q ss_pred             CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347        231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG  260 (294)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~  260 (294)
                          ++..    .....+++.+.+|.+++.
T Consensus       126 ----~~~~----i~id~~~L~~~LG~pVvp  147 (772)
T PRK09554        126 ----EKQN----IRIDIDALSARLGCPVIP  147 (772)
T ss_pred             ----hccC----cHHHHHHHHHHhCCCEEE
Confidence                1112    223456777788888774

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.39  E-value=0.0047  Score=52.21  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCCCC
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDICG   90 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~~~   90 (294)
                      .+.|.+|+||||++..|+..|.  .  .+.+|.++-.|...
T Consensus         3 gI~G~sGSGKTTla~~L~~~l~--~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           3 GIAGSVAVGKSTTARVLQALLS--RWPDHPNVELITTDGFL   41 (220)
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh--hcCCCCcEEEEecCccc
Confidence            4558999999999999999997  4  56789998888543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK04328 hypothetical protein; Provisional

Probab=96.38  E-value=0.022  Score=49.01  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=41.6

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++.|.+.+..  ....+..+.|..|+|||+++..++....  ..|.+++++.++..
T Consensus         7 tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~   62 (249)
T PRK04328          7 TGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH   62 (249)
T ss_pred             CCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence            345556665543  3466777778899999999999998877  67999999999764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.38  E-value=0.0042  Score=54.30  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~   70 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN   70 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence            334444558999999999999999988  66778877665543

>cd01866 Rab2 Rab2 subfamily

Probab=96.37  E-value=0.089  Score=41.98  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+.-.... .....+  ..+|.++++.+.+ ..++..+..++..+....  ...+.+|.|+.+.
T Consensus        53 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl  121 (168)
T cd01866          53 IKLQIWDTAGQESFRS-ITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL  121 (168)
T ss_pred             EEEEEEECCCcHHHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            5688999986332111 112222  5789999998865 577778888887776542  1236788899884

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.37  E-value=0.0025  Score=55.69  Aligned_cols=40  Identities=33%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   66 (274)
T PRK13644         27 KGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDT   66 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEC
Confidence            344555559999999999999999888  6777888766554

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=96.37  E-value=0.11  Score=41.30  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....... ....+  ..+|.++++.+. +..++..+..++..+....  ...+.+|.|+.|.
T Consensus        52 ~~l~l~D~~g~~~~~~~-~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl  120 (167)
T cd01867          52 IKLQIWDTAGQERFRTI-TTAYY--RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM  120 (167)
T ss_pred             EEEEEEeCCchHHHHHH-HHHHh--CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            67889999964332211 11223  579999988865 4577777777777776542  2245688899884

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.0087  Score=49.25  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=34.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..|+-+-|.+|+||||+-.-||..|.  ....+|.+-.+|.+.
T Consensus        28 Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~   68 (245)
T COG4555          28 GEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVR   68 (245)
T ss_pred             ceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeeccccc
Confidence            33444558899999999999999999  888899998888764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=96.37  E-value=0.0096  Score=56.81  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i   69 (510)
T PRK09700         30 PGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY   69 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence            444555559999999999999999998  6677887755554

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.35  E-value=0.0042  Score=59.55  Aligned_cols=40  Identities=30%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ++.++++ |+.|+||||++..|+..+.  ....++.+-+.|..
T Consensus       361 G~~vaIv-G~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~  400 (529)
T TIGR02868       361 GERVAIL-GPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVS  400 (529)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence            5555555 8899999999999999998  77778877655543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd04112 Rab26 Rab26 subfamily

Probab=96.35  E-value=0.1  Score=42.78  Aligned_cols=89  Identities=15%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|++.+.+. .++..+..++..+.+...  ..+.+|.|++|..     ..
T Consensus        50 ~~~~i~Dt~G~~~~~~~-~~~~~--~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~  121 (191)
T cd04112          50 VKLQIWDTAGQERFRSV-THAYY--RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-----GE  121 (191)
T ss_pred             EEEEEEeCCCcHHHHHh-hHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-----hc
Confidence            67889999964321111 11222  56898888887754 667777777777765432  2366888999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.   ....+.+.+.++.+++
T Consensus       122 ~~~~---~~~~~~l~~~~~~~~~  141 (191)
T cd04112         122 RVVK---REDGERLAKEYGVPFM  141 (191)
T ss_pred             cccC---HHHHHHHHHHcCCeEE
Confidence            1111   2345566666665544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK06762 hypothetical protein; Provisional

Probab=96.35  E-value=0.0049  Score=49.44  Aligned_cols=36  Identities=22%  Similarity=0.474  Sum_probs=28.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.+.++.|..|+||||+|..|+..+.  .   .+.+++.|.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~--~---~~~~i~~D~   37 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG--R---GTLLVSQDV   37 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--C---CeEEecHHH
Confidence            34556679999999999999998886  3   477777654

>PRK05636 replicative DNA helicase; Provisional

Probab=96.34  E-value=0.004  Score=59.08  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ....+.|...+.. ....+.++++..|+|||+++.++|...+ ...|++|+++-+...
T Consensus       249 ~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a-~~~g~~v~~fSlEMs  305 (505)
T PRK05636        249 PTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSAS-IKHNKASVIFSLEMS  305 (505)
T ss_pred             ecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEeeCC
Confidence            4456666665544 3567889999999999999999999877 245889999988764

>cd01898 Obg Obg subfamily

Probab=96.34  E-value=0.055  Score=43.00  Aligned_cols=66  Identities=12%  Similarity=-0.035  Sum_probs=41.0

Q ss_pred             cEEEEcCCCCCC------hHHHHHHHHhhcCCCcEEEEecCCchh--hHHHHHHHHHHHHhcC----CCeeEEEeccccc
Q psy11347        161 EYLLIDTPPGTS------DEHLSLVQYLKGLPDIGAIVVTTPQEV--SLLDVRKEIDFCRKVN----IPIIGVVENMATF  228 (294)
Q Consensus       161 d~IiiD~p~~~~------~~~~~~~~~l~~~~ad~vliv~~~~~~--s~~~~~~~l~~l~~~~----~~~~~vvvN~~~~  228 (294)
                      .+.++|+|+-..      .........+  ..+|.++++.+.+..  +......+++.+....    ...+.+|+|++|.
T Consensus        49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  126 (170)
T cd01898          49 SFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL  126 (170)
T ss_pred             eEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence            789999996321      0011222222  468999999988764  5666666666665432    2235689999984

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.33  E-value=0.0061  Score=49.44  Aligned_cols=38  Identities=32%  Similarity=0.324  Sum_probs=31.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|-.|+||||++..|+..|.  ..+..+.++|.|.
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~   45 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDE   45 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHH
Confidence            3566678899999999999999999  7788888887653

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=96.33  E-value=0.1  Score=41.25  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~  228 (294)
                      ..+.++|+|+..... ......+  ..+|.++++.+.+. .++..+..++..+.... .....+|.|+.|.
T Consensus        52 ~~l~i~Dt~G~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  119 (164)
T cd04101          52 VELFIFDSAGQELYS-DMVSNYW--ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL  119 (164)
T ss_pred             EEEEEEECCCHHHHH-HHHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            789999998532211 1122223  57999999988764 55666677777766543 2245688899873

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.33  E-value=0.0035  Score=54.93  Aligned_cols=41  Identities=27%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~   72 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT   72 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence            344555559999999999999999998  67778877665553

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.31  E-value=0.0089  Score=51.61  Aligned_cols=39  Identities=36%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~   65 (255)
T PRK11231         27 TGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKP   65 (255)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEE
Confidence            334555559999999999999999887  666677765443

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=96.31  E-value=0.018  Score=53.11  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+.+.+...
T Consensus        29 Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~   69 (402)
T PRK09536         29 GSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEA   69 (402)
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCc
Confidence            33444558999999999999999998  777888887766543

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.30  E-value=0.0054  Score=52.46  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   65 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNH   65 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEe
Confidence            334555559999999999999999988  666778765544

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.29  E-value=0.0076  Score=52.16  Aligned_cols=54  Identities=22%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             ChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347         35 GIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG   90 (294)
Q Consensus        35 ~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~   90 (294)
                      ..+.|...+.. ....+.++++..|+|||+++.++|..++  .. +.+|+++.++...
T Consensus         5 G~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a--~~~~~~vly~SlEm~~   60 (259)
T PF03796_consen    5 GFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAA--LNGGYPVLYFSLEMSE   60 (259)
T ss_dssp             STHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHH--HTTSSEEEEEESSS-H
T ss_pred             ChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHH--HhcCCeEEEEcCCCCH
Confidence            45566666654 3566999999999999999999999999  55 6999999998753

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.29  E-value=0.0069  Score=51.47  Aligned_cols=39  Identities=31%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   49 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQI   49 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence            33555559999999999999999988  6777887755443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.29  E-value=0.0061  Score=52.17  Aligned_cols=39  Identities=31%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   64 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGED   64 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeE
Confidence            333455558999999999999999888  667777665444

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=96.29  E-value=0.0089  Score=54.26  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+-|.
T Consensus        29 e~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i   66 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV   66 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            3445558899999999999999988  7777887765554

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=96.29  E-value=0.007  Score=60.00  Aligned_cols=41  Identities=32%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |+.|+||||+...|+..+.  ....+|.+-+.|...
T Consensus       491 G~~iaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~  531 (694)
T TIGR03375       491 GEKVAII-GRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQ  531 (694)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhh
Confidence            4555555 8999999999999999999  777888876665543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PLN03232 ABC transporter C family member; Provisional

Probab=96.29  E-value=0.0094  Score=63.96  Aligned_cols=44  Identities=32%  Similarity=0.426  Sum_probs=35.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      +..++++ |+.|+||||++..|.+.+.  ....++++-+.|...-++
T Consensus      1262 GekvaIV-G~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232       1262 SEKVGVV-GRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCH
Confidence            6667777 8899999999999999999  788889887777654333

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.28  E-value=0.012  Score=50.91  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=30.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~   65 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDL   65 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEc
Confidence            344555558999999999999999888  6667787655443

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.28  E-value=0.075  Score=44.80  Aligned_cols=48  Identities=25%  Similarity=0.316  Sum_probs=37.9

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcC----CCCcEEEEecC
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN----ESVDVGVLDLD   87 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~----~g~~VlliD~D   87 (294)
                      +.+-+.+.+..=.++-+..|+||||+..-+|+.++ ..    .++||.+||.-
T Consensus       128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s-~g~~~~l~kkv~IiDer  179 (308)
T COG3854         128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS-DGINQFLPKKVGIIDER  179 (308)
T ss_pred             HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhh-ccccccCCceEEEEecc
Confidence            45566666666466668899999999999999999 33    57899999874

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.28  E-value=0.0062  Score=52.98  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=41.5

Q ss_pred             cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~   89 (294)
                      ..++.|...+.. ....+.++.+..|+||||++.++|..++  .. |.+|+++.++..
T Consensus        15 tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~   70 (271)
T cd01122          15 WPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP   70 (271)
T ss_pred             CCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC
Confidence            334444444332 2455888899999999999999999998  55 999999999764

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.27  E-value=0.0079  Score=50.88  Aligned_cols=39  Identities=36%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHH-----hhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVL-----AKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~l-----a~~~~g~~VlliD~D   87 (294)
                      ...+..+-|.+|+||||+...|+..+     .  ....+|.+-+-+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~   68 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKD   68 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEE
Confidence            34455555899999999999999999     6  556677765444

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.27  E-value=0.0053  Score=55.62  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+-+.
T Consensus        32 Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i   70 (351)
T PRK11432         32 GTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV   70 (351)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence            33555558999999999999999998  7777777755554

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.27  E-value=0.0062  Score=51.34  Aligned_cols=54  Identities=17%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ......+++-.........++.|+.|+|||+++..++..+.  ..+.++++++++.
T Consensus        23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~   76 (226)
T TIGR03420        23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAE   76 (226)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHH
Confidence            34555666544344455666678999999999999999998  7788999998854

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01868 Rab11_like Rab11-like

Probab=96.27  E-value=0.1  Score=41.24  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=42.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI--PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..++.+|++.+.. ..+...+..++..+.+...  ..+-+|.|+.|.
T Consensus        52 ~~~~l~D~~g~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl  120 (165)
T cd01868          52 IKAQIWDTAGQERYRAI-TSAYY--RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEEEEeCCChHHHHHH-HHHHH--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            67889999864321111 11222  5788788887664 5777777777777765432  346688999884

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.26  E-value=0.015  Score=53.85  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=29.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...|-.+-|.+|.||||+...|...+.  .....+.+-+-
T Consensus        29 ~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~   66 (501)
T COG3845          29 KGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGK   66 (501)
T ss_pred             CCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCE
Confidence            444555669999999999999999999  76666665433

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.26  E-value=0.0057  Score=55.92  Aligned_cols=39  Identities=31%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+-+.
T Consensus        40 Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i   78 (375)
T PRK09452         40 GEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI   78 (375)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            33555558999999999999999998  7777887765554

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.25  E-value=0.0066  Score=50.52  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+-+.
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~   65 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPI   65 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence            33555558899999999999999988  7777887654443

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.25  E-value=0.0078  Score=49.71  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i   64 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNI   64 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCccc
Confidence            334555558999999999999999988  6677787765544

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.25  E-value=0.0048  Score=55.96  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=30.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+-+.
T Consensus        30 Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~   68 (353)
T TIGR03265        30 GEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI   68 (353)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence            33455558899999999999999998  7777887755544

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.22  E-value=0.073  Score=46.40  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=27.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -..+.|..|+||||+...|+..+.  ....++.+-+.+.
T Consensus       113 ~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v  149 (270)
T TIGR02858       113 NTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKV  149 (270)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEe
Confidence            345558899999999999999999  6655665544443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.22  E-value=0.096  Score=47.38  Aligned_cols=37  Identities=16%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD   85 (294)
                      .+-+.+++|..|+||||+...|...+.  .. +.+|+.++
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiE  158 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIE  158 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEc
Confidence            456777889999999999999998887  43 45666653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.22  E-value=0.007  Score=51.95  Aligned_cols=40  Identities=35%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ..     ..+|.+-+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~   70 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI   70 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence            344555558999999999999999987  55     67787654443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd04125 RabA_like RabA-like subfamily

Probab=96.21  E-value=0.24  Score=40.32  Aligned_cols=66  Identities=15%  Similarity=0.072  Sum_probs=42.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +++.++|+++..... ......+  ..+|.++++.+.+. .++..+..++..+....  ...+.+|.|+.|.
T Consensus        49 ~~~~i~Dt~g~~~~~-~~~~~~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl  117 (188)
T cd04125          49 IKLQIWDTNGQERFR-SLNNSYY--RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL  117 (188)
T ss_pred             EEEEEEECCCcHHHH-hhHHHHc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence            678899999643211 1112222  57999999887754 67777777777776542  2346788899884

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.21  E-value=0.018  Score=47.88  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhc-CCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKS-NESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~-~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+... .....|.+-+.+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~   74 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY   74 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence            44455555999999999999999987600 1244566544443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.21  E-value=0.0059  Score=54.83  Aligned_cols=40  Identities=30%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.++.|-.|+||||++..|+..|. ...|.+|.++|.|---
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~-~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLR-RERGWAVAVITYDDII   40 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH-hccCCeEEEEcccccc
Confidence            357789999999999999999987 2589999999999643

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.20  E-value=0.01  Score=49.25  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~   64 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPL   64 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEec
Confidence            333444458999999999999999988  6677787655443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.19  E-value=0.0087  Score=58.13  Aligned_cols=40  Identities=18%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |+.|+||||++..|+..+.  .. .+|.+-+.|...
T Consensus       376 G~~vaIv-G~SGsGKSTL~~lL~g~~p--~~-G~I~i~g~~i~~  415 (588)
T PRK11174        376 GQRIALV-GPSGAGKTSLLNALLGFLP--YQ-GSLKINGIELRE  415 (588)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CC-cEEEECCEeccc
Confidence            4555555 8899999999999999885  54 578776665543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=96.19  E-value=0.025  Score=54.80  Aligned_cols=66  Identities=17%  Similarity=0.033  Sum_probs=46.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.- ...-.+...+  ..+|.+++|++.+......+...+..+...+++.+.+++|++|.
T Consensus        50 ~~v~~iDtPGhe-~f~~~~~~g~--~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl  115 (581)
T TIGR00475        50 YRLGFIDVPGHE-KFISNAIAGG--GGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR  115 (581)
T ss_pred             EEEEEEECCCHH-HHHHHHHhhh--ccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence            678999999632 1112223333  57999999998876544556666667777888867799999984

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.18  E-value=0.094  Score=46.65  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .+...+++|..|+||||+...|...+.  . ..+++.++
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~--~-~~~iv~ie  178 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIP--K-DERIITIE  178 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCC--c-cccEEEEc
Confidence            345667779999999999999998887  4 44566664

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.024  Score=49.68  Aligned_cols=72  Identities=24%  Similarity=0.136  Sum_probs=45.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh--hhhccccccccccccCCCCcceeccCeE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM--PRMMGLLNEQVHQSASGWSPVFLEENLS  121 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l--~~~lg~~~~~~~~~~~~~~~~~~~~~l~  121 (294)
                      +-+++++ |.+|+||||+...+-..=.  ....+|.+-+-|...-+-  ...+..+...+++.++.+......+|+.
T Consensus        32 GeI~GII-G~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA  105 (339)
T COG1135          32 GEIFGII-GYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA  105 (339)
T ss_pred             CcEEEEE-cCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence            4445555 8899999999999988877  788899988866543211  1223344445556555555444444443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.18  E-value=0.0097  Score=50.55  Aligned_cols=40  Identities=23%  Similarity=0.441  Sum_probs=33.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE-EecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV-LDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll-iD~D~   88 (294)
                      ...+..+.|.+|+||||++..|+..+.  ..+..+.+ +.+|.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~   72 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDG   72 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEeccc
Confidence            456777779999999999999999999  77777666 76665

>cd04122 Rab14 Rab14 subfamily

Probab=96.18  E-value=0.2  Score=39.78  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|.
T Consensus        51 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl  119 (166)
T cd04122          51 IKLQIWDTAGQERFRA-VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL  119 (166)
T ss_pred             EEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            7889999995432111 112223  57899999987765 67777777777665432  2346788899884

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.18  E-value=0.0081  Score=53.26  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~   67 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL   67 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence            344555558999999999999999888  67778877665543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.17  E-value=0.008  Score=49.85  Aligned_cols=38  Identities=29%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+.|.+|+||||+...|+..+.  ....+|.+-+-+
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~   64 (200)
T PRK13540         27 GGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQS   64 (200)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCc
Confidence            33455558999999999999999887  666677764433

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.17  E-value=0.027  Score=48.78  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      +.++.+.+-+..  ....+..+.|..|+|||+++..++...+  ..|.+|++|-++.....
T Consensus         7 TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~~~   65 (260)
T COG0467           7 TGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESPEE   65 (260)
T ss_pred             CCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCHHH
Confidence            344445555552  4566777779999999999999999999  88999999999876433

>cd04121 Rab40 Rab40 subfamily

Probab=96.17  E-value=0.13  Score=42.31  Aligned_cols=89  Identities=15%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC-CeeEEEeccccccCCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI-PIIGVVENMATFVCPKCTKPS  237 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~  237 (294)
                      +.+-|+|+++.-....+ .....  ..+|.+|++.+.+ ..++..+..+++.+.+... ..+.+|.|+.|..     ...
T Consensus        55 ~~l~iwDt~G~~~~~~l-~~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~-----~~~  126 (189)
T cd04121          55 VKLQLWDTSGQGRFCTI-FRSYS--RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA-----FKR  126 (189)
T ss_pred             EEEEEEeCCCcHHHHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch-----hcc
Confidence            77889999854322211 11222  5889999888775 5899999988888865422 2466888999853     111


Q ss_pred             ccCCCCchhHHHHHhhcCCcee
Q psy11347        238 EIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       238 ~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+.   .+..+.+.+..+.+++
T Consensus       127 ~v~---~~~~~~~a~~~~~~~~  145 (189)
T cd04121         127 QVA---TEQAQAYAERNGMTFF  145 (189)
T ss_pred             CCC---HHHHHHHHHHcCCEEE
Confidence            222   4456677777776655

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.0044  Score=51.07  Aligned_cols=38  Identities=37%  Similarity=0.486  Sum_probs=33.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.+++|-.|+||||+|.+||+.|.  +.+.+|.-+..|..
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~--~~i~~vi~l~kdy~   40 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELR--QEIWRVIHLEKDYL   40 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHH--Hhhhhccccchhhh
Confidence            456678899999999999999999  89999988888753

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.17  E-value=0.0049  Score=53.76  Aligned_cols=40  Identities=25%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i   73 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI   73 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence            344555559999999999999999988  6677787765554

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.17  E-value=0.12  Score=40.77  Aligned_cols=66  Identities=24%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCCC--eeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNIP--IIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.....  ...... ...+|.+|++.+.+ ..++..+..++..+.....+  .+.++.|+.+.
T Consensus        50 ~~~~i~D~~G~~~~~--~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  118 (163)
T cd01860          50 VKFEIWDTAGQERYR--SLAPMY-YRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL  118 (163)
T ss_pred             EEEEEEeCCchHHHH--HHHHHH-hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            678899999643211  111111 15789999888765 46788888888877655422  35678899873

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.16  E-value=0.024  Score=50.55  Aligned_cols=56  Identities=14%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhh----cCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAK----SNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~----~~~g~~VlliD~D~~   89 (294)
                      ...+.|...+..  ....|.-+.|..|+|||+++..+|.....    ...+.+|++||+.-.
T Consensus        80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~  141 (313)
T TIGR02238        80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT  141 (313)
T ss_pred             CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence            445666666654  35678888899999999999999875430    013679999999754

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd04113 Rab4 Rab4 subfamily

Probab=96.16  E-value=0.2  Score=39.43  Aligned_cols=65  Identities=18%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+..... ......+  ..+|.++++.+.+. .+...+..++..+...   +. .+.+|.|+.+.
T Consensus        49 ~~l~l~D~~G~~~~~-~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~  117 (161)
T cd04113          49 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITNRTSFEALPTWLSDARALASPNI-VVILVGNKSDL  117 (161)
T ss_pred             EEEEEEECcchHHHH-HhHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEchhc
Confidence            678999999643211 1112222  57898888887654 6666677777766533   33 36788899874

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.16  E-value=0.023  Score=49.96  Aligned_cols=69  Identities=25%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcc---ccccccccccCCCCccee
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG---LLNEQVHQSASGWSPVFL  116 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg---~~~~~~~~~~~~~~~~~~  116 (294)
                      ....|.++-|-+|+||||+..++-+..-  ....+|++=+-|...-+-..+..   .....+++.+..++....
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV  123 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV  123 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence            3566888889999999999999999999  88889999888876544444333   223345566555555433

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.15  E-value=0.011  Score=50.41  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+  .  ....+|.+-+.+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~~~G~i~~~g~~~   66 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYE--VTSGTILFKGQDL   66 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCcceEEECCEec
Confidence            34455555899999999999999984  4  4556676655443

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.15  E-value=0.026  Score=47.20  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +|.-++|.+|+||||+|..|...|.  ..  +|.+|-.|...
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~--~~--~~~~I~~D~YY   46 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLG--VE--KVVVISLDDYY   46 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhC--cC--cceEeeccccc
Confidence            5666778899999999999999999  44  88888887543

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.14  E-value=0.013  Score=55.84  Aligned_cols=55  Identities=15%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|.+.+..  ....+..+.|..|+|||+++..++...+  ..|.+|+++.++..
T Consensus       256 ~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~--~~g~~~~yis~e~~  312 (509)
T PRK09302        256 SSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC--RRGERCLLFAFEES  312 (509)
T ss_pred             cCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence            4667777777753  2355666678999999999999999988  78999999998753

>PRK08840 replicative DNA helicase; Provisional

Probab=96.14  E-value=0.0067  Score=57.02  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=44.4

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+.. ...-+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus       201 ~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a-~~~~~~v~~fSlEMs~  258 (464)
T PRK08840        201 DTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAA-MDQDKPVLIFSLEMPA  258 (464)
T ss_pred             CCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHH-HhCCCeEEEEeccCCH
Confidence            4556666665543 3577889999999999999999999987 2358999999887643

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=96.14  E-value=0.021  Score=53.16  Aligned_cols=66  Identities=15%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.-. ..-.+...+  ..+|.+++|++.+..   ....+...+...+..+.+.+-+++|++|.
T Consensus        85 ~~i~iiDtpGh~~-f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl  153 (426)
T TIGR00483        85 YEVTIVDCPGHRD-FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS  153 (426)
T ss_pred             eEEEEEECCCHHH-HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence            7899999996322 111222223  579999999887664   22223333444455566667789999984

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PTZ00243 ABC transporter; Provisional

Probab=96.14  E-value=0.014  Score=62.83  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      +..|+++ |+.|+||||++..|.+.+.  ....++++-+.|...-++
T Consensus      1336 GekVaIV-GrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243       1336 REKVGIV-GRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGL 1379 (1560)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCH
Confidence            5666766 8999999999999999999  788889887777654343

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.13  E-value=0.046  Score=50.27  Aligned_cols=66  Identities=20%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             ccEEEEcCCCCCC-h--HH-----HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTS-D--EH-----LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~-~--~~-----~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+++|||++-.. .  ..     -.+..++  ..||.++.|++....-...=..+.+.++..+.+ ..+|+|+++.
T Consensus        51 ~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai--~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~  124 (444)
T COG1160          51 REFILIDTGGLDDGDEDELQELIREQALIAI--EEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDN  124 (444)
T ss_pred             ceEEEEECCCCCcCCchHHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence            6799999995331 1  11     1233334  579999999987663333444555666644455 5689999883

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=96.13  E-value=0.13  Score=41.12  Aligned_cols=67  Identities=18%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC---CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN---IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~  228 (294)
                      +++.|+|+++..... ....... ...+|.++++.+.+. .++..+..++..+....   ...+.+|.|+.|.
T Consensus        51 ~~~~i~Dt~G~~~~~-~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  121 (170)
T cd04115          51 IKVQLWDTAGQERFR-KSMVQHY-YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL  121 (170)
T ss_pred             EEEEEEeCCChHHHH-HhhHHHh-hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            788999998643211 0111111 157898888887754 67777777777776542   1236788999884

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PF13479 AAA_24: AAA domain

Probab=96.13  E-value=0.023  Score=47.76  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=25.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.-.++-|..|+||||++..+          .+++++|+|..
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g   34 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG   34 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence            345666799999999987765          48999999874

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.13  E-value=0.014  Score=52.72  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccc
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL   99 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~   99 (294)
                      .....++|+-|++|+||||++..|-...+  ....++++-|.-.+..+++.|.++
T Consensus       346 ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~L  398 (546)
T COG4615         346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRKL  398 (546)
T ss_pred             EecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHHH
Confidence            34566888999999999999999999999  777788776655544455555443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=96.13  E-value=0.012  Score=53.98  Aligned_cols=40  Identities=28%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...||..+.  ....+|.+-+-+.
T Consensus        44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i   83 (377)
T PRK11607         44 KGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL   83 (377)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            334555568899999999999999988  6677777655444

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.13  E-value=0.016  Score=62.27  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      +..|+++ |+.|+||||+...|.+.+.  ....++.+-+.|...-++
T Consensus      1312 GekiaIV-GrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957      1312 GEKVGIV-GRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCH
Confidence            5667766 8999999999999999998  778888887777655443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.13  E-value=0.015  Score=52.78  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~   61 (352)
T PRK11144         24 QGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRV   61 (352)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence            33555558999999999999999988  667778765544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.13  E-value=0.016  Score=50.22  Aligned_cols=40  Identities=23%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC---CCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE---SVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~---g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ..   ..+|.+-+.+.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~~~~G~i~~~g~~~   71 (262)
T PRK09984         29 HGEMVALLGPSGSGKSTLLRHLSGLIT--GDKSAGSHIELLGRTV   71 (262)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC--CCCCCceEEEECCEec
Confidence            334455558999999999999999886  43   25776655443

>cd00154 Rab Rab family

Probab=96.13  E-value=0.086  Score=40.88  Aligned_cols=66  Identities=18%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +++.++|+|+..... ......+  ..+|.++++++.+. .++..+..++..+....  .....+|.|+.+.
T Consensus        49 ~~~~l~D~~g~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  117 (159)
T cd00154          49 VKLQIWDTAGQERFR-SITPSYY--RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL  117 (159)
T ss_pred             EEEEEEecCChHHHH-HHHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence            789999999653211 1122223  57899998888755 56777777777776554  2346789999873

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.12  E-value=0.051  Score=47.53  Aligned_cols=147  Identities=17%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             cccCCCCCCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc
Q psy11347         24 CSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~  103 (294)
                      .|+.-|.-+....|.+...+-...+-+..+.|..|+||||..+++--++.+ ...+.++-|+ ||-            ++
T Consensus       101 Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~-~~~~HIlTIE-DPI------------E~  166 (353)
T COG2805         101 IPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINK-HKAKHILTIE-DPI------------EY  166 (353)
T ss_pred             cCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhc-cCCcceEEec-Cch------------Hh
Confidence            456666667777777777777777777777799999999999999999992 2233333232 221            01


Q ss_pred             cccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhh
Q psy11347        104 VHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK  183 (294)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~  183 (294)
                      +..+...+           +       .-++ +-....-....++..++    ++ +|+|+|-.--..  +++.++  +.
T Consensus       167 vh~skksl-----------I-------~QRE-vG~dT~sF~~aLraALR----eD-PDVIlvGEmRD~--ETi~~A--Lt  218 (353)
T COG2805         167 VHESKKSL-----------I-------NQRE-VGRDTLSFANALRAALR----ED-PDVILVGEMRDL--ETIRLA--LT  218 (353)
T ss_pred             hhcchHhh-----------h-------hHHH-hcccHHHHHHHHHHHhh----cC-CCEEEEeccccH--HHHHHH--HH
Confidence            11110000           0       0000 00000111223444444    34 999999766443  233332  33


Q ss_pred             cCCCcEEEEecCCchhhHHHHHHHHHHHH
Q psy11347        184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCR  212 (294)
Q Consensus       184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~  212 (294)
                      .+...+.|+-|-.+....+...|+++.+-
T Consensus       219 AAETGHLV~~TLHT~sA~~ti~RiidvFp  247 (353)
T COG2805         219 AAETGHLVFGTLHTNSAAKTIDRIIDVFP  247 (353)
T ss_pred             HHhcCCEEEEecccccHHHHHHHHHHhCC
Confidence            35678889999888889999999888873

>cd04154 Arl2 Arl2 subfamily

Probab=96.11  E-value=0.17  Score=40.55  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=39.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRK----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+...... .....+  ..+|.++++.+.+.. ++......+..+..    .+. .+.+|.|+.|.
T Consensus        58 ~~l~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl  127 (173)
T cd04154          58 YKLNIWDVGGQKTLRP-YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGA-TLLILANKQDL  127 (173)
T ss_pred             EEEEEEECCCCHHHHH-HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCC-CEEEEEECccc
Confidence            6789999996432111 112223  578988988877654 55555555544422    233 46689999883

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.11  E-value=0.0068  Score=51.52  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~   63 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKD   63 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEE
Confidence            444555669999999999999999998  667777764433

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.10  E-value=0.15  Score=40.41  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=41.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +.+-|+|+|+....  ........ ..+|.++++.+.+. .++..+..++..+.+..  ...+.+|.|+++.
T Consensus        51 ~~~~i~D~~G~~~~--~~~~~~~~-~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl  119 (166)
T cd01869          51 IKLQIWDTAGQERF--RTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  119 (166)
T ss_pred             EEEEEEECCCcHhH--HHHHHHHh-CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence            67889999864321  11212111 57899999987654 67777777777776542  1235688899873

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04120 Rab12 Rab12 subfamily

Probab=96.09  E-value=0.21  Score=41.57  Aligned_cols=66  Identities=17%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~  228 (294)
                      +.+-|.|+++.-....+ ....+  ..+|.+|+|.+.+. .++..+..+++.+++...  ..+.+|.|+.|.
T Consensus        49 v~l~iwDtaGqe~~~~l-~~~y~--~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL  117 (202)
T cd04120          49 IRLQIWDTAGQERFNSI-TSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC  117 (202)
T ss_pred             EEEEEEeCCCchhhHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            78899999954322111 11222  58999999987655 788888888887765422  246788899984

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.09  E-value=0.039  Score=43.72  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .+..+-|.+|+||||+...|+..+.  ....++.+-+.
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~   61 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGK   61 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCE
Confidence            3555558999999999999999887  66666655443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA00729 NTP-binding motif containing protein

Probab=96.08  E-value=0.013  Score=49.35  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=24.5

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.+....-.-.++.|..|+||||+|..||..+.
T Consensus         9 ~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729          9 VSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             HHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3334443334456667899999999999999875

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.08  E-value=0.016  Score=50.91  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+.|..+.|..|+||||++..|...+.+...+.+|.++..|...
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            45667777999999999999999888721235589999988654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0074  Score=52.84  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   68 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPI   68 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence            333444558999999999999999888  7777887755554

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.07  E-value=0.0061  Score=52.03  Aligned_cols=38  Identities=32%  Similarity=0.447  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~   83 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGL   83 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE
Confidence            444555569999999999999999887  66667766443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0071  Score=52.70  Aligned_cols=40  Identities=25%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~   73 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI   73 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence            444555569999999999999999988  6667787655444

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0071  Score=53.03  Aligned_cols=40  Identities=35%  Similarity=0.435  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i   74 (280)
T PRK13633         35 KGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT   74 (280)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence            334555558999999999999999988  6777787755444

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.04  E-value=0.013  Score=49.47  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~   70 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGED   70 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEE
Confidence            444556669999999999999999887  666677764433

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=96.03  E-value=0.044  Score=54.39  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|...+. .  ....+..+.|..|+||||++..++....  ..|.+|++||..-.
T Consensus        42 sTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t   99 (790)
T PRK09519         42 PTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHA   99 (790)
T ss_pred             cCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccc
Confidence            466777887776 2  3577788889999999999999988888  78999999999754

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.02  E-value=0.0095  Score=58.73  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      +..++++ |++|+||||++..|...+.  ....++.+-+.|...-+
T Consensus       499 Ge~vaIv-G~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~  541 (709)
T COG2274         499 GEKVAIV-GRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDID  541 (709)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcC
Confidence            4455555 9999999999999999999  88889999888776544

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.027  Score=53.75  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus       288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~  327 (510)
T PRK09700        288 RGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI  327 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence            344555669999999999999999988  6777887755444

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.026  Score=48.22  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i   67 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI   67 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence            33455558999999999999999988  6777888765554

>PRK05433 GTP-binding protein LepA; Provisional

Probab=95.99  E-value=0.047  Score=53.12  Aligned_cols=65  Identities=18%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |.+.|+|+|+... ........+  ..+|.+|+|++.....-......+..+...+++ +.+|+|+.|.
T Consensus        74 ~~lnLiDTPGh~d-F~~~v~~sl--~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl  138 (600)
T PRK05433         74 YILNLIDTPGHVD-FSYEVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL  138 (600)
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence            8899999996543 222233334  579999999988653222333344444456777 5688999983

>PLN03130 ABC transporter C family member; Provisional

Probab=95.99  E-value=0.021  Score=61.72  Aligned_cols=44  Identities=30%  Similarity=0.384  Sum_probs=35.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      +..|+++ |+.|+||||++..|.+.+.  ....+|++-+.|...-++
T Consensus      1265 GekVaIV-GrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130       1265 SEKVGIV-GRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGL 1308 (1622)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCH
Confidence            5667777 8899999999999999998  778888887777654343

>cd01893 Miro1 Miro1 subfamily

Probab=95.99  E-value=0.13  Score=40.89  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=40.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHH-HHHHHHHhcC-CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVR-KEIDFCRKVN-IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~-~~l~~l~~~~-~~~~~vvvN~~~~  228 (294)
                      +++.|+|+|+.... .......+  ..+|.++++.+.+ ..++..+. .++..++... ...+.+|.|+.|.
T Consensus        47 ~~~~i~Dt~G~~~~-~~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl  115 (166)
T cd01893          47 VPTTIVDTSSRPQD-RANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL  115 (166)
T ss_pred             EEEEEEeCCCchhh-hHHHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence            78999999954321 11222233  5789888887664 46666653 4555555432 2246788899884

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0035  Score=59.10  Aligned_cols=41  Identities=32%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+.++++ |++|+||||+...|+..++  .....+.+-|.|...
T Consensus       347 g~~talv-G~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~  387 (559)
T COG4988         347 GQLTALV-GASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRD  387 (559)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHhCcCC--CCCceEEECCccccc
Confidence            4445555 8999999999999999999  788888888777654

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=95.97  E-value=0.0079  Score=50.66  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=27.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .+..+.|.+|+||||+...|+..+.  ....+|.+-+-
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~   67 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQ   67 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCE
Confidence            3444558999999999999999888  66777766443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.96  E-value=0.019  Score=50.50  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcC-----CCCcEEEEecCCCCCChh---hhccccccccccc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN-----ESVDVGVLDLDICGPSMP---RMMGLLNEQVHQS  107 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~-----~g~~VlliD~D~~~~~l~---~~lg~~~~~~~~~  107 (294)
                      +.+++++ |.+|+||||++..+...|.  .     .+.++.+-+-|...-+-.   .+.|.+...++++
T Consensus        31 GE~lgiV-GESGsGKS~~~~aim~llp--~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          31 GEILGIV-GESGSGKSVLAKAIMGLLP--KPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD   96 (316)
T ss_pred             CcEEEEE-cCCCCCHHHHHHHHHhccC--CCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence            4556666 8899999999999999997  3     233555555554332322   3456666666554

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.94  E-value=0.022  Score=47.83  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=28.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+.|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~   74 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKT   74 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEE
Confidence            33455558899999999999999988  666677765443

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=95.94  E-value=0.25  Score=39.68  Aligned_cols=66  Identities=18%  Similarity=0.122  Sum_probs=43.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC---CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI---PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~---~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++.....++..+.+...   ..+.+|.|+.|.
T Consensus        49 ~~l~i~Dt~G~~~~~~~-~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl  118 (170)
T cd04108          49 FSLQLWDTAGQERFKCI-ASTYY--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL  118 (170)
T ss_pred             EEEEEEeCCChHHHHhh-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence            67889999954321111 11222  58999999988844 577778887877644322   246789999984

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.94  E-value=0.0094  Score=51.32  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+..+.|.+|+||||+...|+..+.  ....+|.+-+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~   62 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGE   62 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence            334455559999999999999999988  66677776443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.94  E-value=0.025  Score=48.95  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=27.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~   71 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLA   71 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEE
Confidence            333555558999999999999999988  66777764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.94  E-value=0.039  Score=45.40  Aligned_cols=41  Identities=24%  Similarity=0.496  Sum_probs=32.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +++-+++ |.+|+||||+-..+++.+.  .....|.+-..|...
T Consensus        27 g~iTs~I-GPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~   67 (252)
T COG4604          27 GGITSII-GPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTS   67 (252)
T ss_pred             CceeEEE-CCCCccHHHHHHHHHHhcc--ccCceEEEeeeeccc
Confidence            4444554 8899999999999999999  777788887777654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=95.94  E-value=0.051  Score=53.42  Aligned_cols=85  Identities=20%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |.+-|||||+..+ ....+...|  ..+|..|+|++....-.-.+..+++++.+.+++.+ +++|++|.          +
T Consensus        76 ~~iNlIDTPGHVD-Ft~EV~rsl--rvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR----------~  141 (697)
T COG0480          76 YRINLIDTPGHVD-FTIEVERSL--RVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDR----------L  141 (697)
T ss_pred             eEEEEeCCCCccc-cHHHHHHHH--HhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccc----------c
Confidence            8999999997765 334455555  67899999999999888899999999999999954 88899983          2


Q ss_pred             CCCCchhHHHHHhhcCCce
Q psy11347        240 FPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~  258 (294)
                      ..++....+++.+.++.+.
T Consensus       142 ~a~~~~~~~~l~~~l~~~~  160 (697)
T COG0480         142 GADFYLVVEQLKERLGANP  160 (697)
T ss_pred             ccChhhhHHHHHHHhCCCc
Confidence            3344556677777766533

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.94  E-value=0.0098  Score=48.51  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .++.|..|+|||.+|..+|..+.  ..|++|+++..
T Consensus        50 l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~~   83 (178)
T PF01695_consen   50 LILYGPPGTGKTHLAVAIANEAI--RKGYSVLFITA   83 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEH
T ss_pred             EEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEeec
Confidence            44456789999999999999999  79999999976

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK05439 pantothenate kinase; Provisional

Probab=95.93  E-value=0.015  Score=51.59  Aligned_cols=43  Identities=28%  Similarity=0.311  Sum_probs=34.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+..++|..|+||||+|..|+..|.+...+.+|.++..|--
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            4556667799999999999999999982124789999999854

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=95.93  E-value=0.056  Score=49.48  Aligned_cols=150  Identities=19%  Similarity=0.188  Sum_probs=97.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHH---HhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARV---LAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM  123 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~---la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~  123 (294)
                      .+.++|+| ....|||||+-.|..+   ++  ..| .|--=   -              .-....+.|..+....++++.
T Consensus        12 RRTFAIIS-HPDAGKTTlTEkLLlfGgaIq--~AG-~Vk~r---k--------------~~~~a~SDWM~iEkqRGISVt   70 (528)
T COG4108          12 RRTFAIIS-HPDAGKTTLTEKLLLFGGAIQ--EAG-TVKGR---K--------------SGKHAKSDWMEIEKQRGISVT   70 (528)
T ss_pred             hcceeEEe-cCCCCcccHHHHHHHhcchhh--hcc-eeeec---c--------------CCcccccHHHHHHHhcCceEE
Confidence            45677775 5679999999887654   33  222 11000   0              001234567777777888876


Q ss_pred             ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCC--CChHHHHHHHHhhcCCCcEEEEecCCchhhH
Q psy11347        124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL  201 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~--~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~  201 (294)
                      .+-.....                          +++-+=|+|||+.  .+.+++.++     .++|..|+|++....--
T Consensus        71 sSVMqF~Y--------------------------~~~~iNLLDTPGHeDFSEDTYRtL-----tAvDsAvMVIDaAKGiE  119 (528)
T COG4108          71 SSVMQFDY--------------------------ADCLVNLLDTPGHEDFSEDTYRTL-----TAVDSAVMVIDAAKGIE  119 (528)
T ss_pred             eeEEEecc--------------------------CCeEEeccCCCCccccchhHHHHH-----HhhheeeEEEecccCcc
Confidence            54322110                          1256778999965  456667777     46799999998877666


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        202 LDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       202 ~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+..+.+.++..+++++ -.+|+.+.      .    .+.-.+.++++.+.+++...
T Consensus       120 ~qT~KLfeVcrlR~iPI~-TFiNKlDR------~----~rdP~ELLdEiE~~L~i~~~  166 (528)
T COG4108         120 PQTLKLFEVCRLRDIPIF-TFINKLDR------E----GRDPLELLDEIEEELGIQCA  166 (528)
T ss_pred             HHHHHHHHHHhhcCCceE-EEeecccc------c----cCChHHHHHHHHHHhCccee
Confidence            778888888899999954 66899884      2    22334678899888876544

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.92  E-value=0.0075  Score=53.14  Aligned_cols=40  Identities=33%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i   70 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVV   70 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence            333445558999999999999999988  7777887755554

>PTZ00035 Rad51 protein; Provisional

Probab=95.91  E-value=0.029  Score=50.50  Aligned_cols=55  Identities=16%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~   89 (294)
                      ....+.|...+..  ....+.-+.|..|+||||++..++....  .      .+.+|++||....
T Consensus       101 sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q--lp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        101 TTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ--LPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             cCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc--cccccCCCCceEEEEEccCC
Confidence            3556777776654  3567777778999999999999987655  3      5679999998653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.90  E-value=0.01  Score=49.05  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..+.|.+|+||||++..|+..+.    +.++.++..|..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~   36 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSY   36 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEeccc
Confidence            45668899999999999999885    457888888853

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07004 replicative DNA helicase; Provisional

Probab=95.89  E-value=0.004  Score=58.47  Aligned_cols=57  Identities=18%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.|.+.+.. ....+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus       197 ~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a-~~~~~~v~~fSlEM~~  254 (460)
T PRK07004        197 PTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVA-VEYGLPVAVFSMEMPG  254 (460)
T ss_pred             cCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHH-HHcCCeEEEEeCCCCH
Confidence            3455666655443 3566889999999999999999999887 2468999999887653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.89  E-value=0.0098  Score=52.25  Aligned_cols=40  Identities=30%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~   70 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI   70 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence            333445558999999999999999998  7777887766554

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.054  Score=45.54  Aligned_cols=43  Identities=21%  Similarity=0.167  Sum_probs=28.1

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ....+-++-|.+|+||||++..|+..=.=.-...+|++-.-|.
T Consensus        28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI   70 (251)
T COG0396          28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI   70 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence            3555666679999999999998887532003444566554444

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.88  E-value=0.011  Score=50.47  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~   63 (237)
T TIGR00968        26 GSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQD   63 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEE
Confidence            33444458999999999999999888  666677654433

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=95.88  E-value=0.31  Score=38.51  Aligned_cols=65  Identities=11%  Similarity=0.099  Sum_probs=40.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+..... ......+  ..+|.++++++... .++......+..+.+    .+.+ +.+|+|+.+.
T Consensus        50 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~  119 (167)
T cd04160          50 ARLKFWDLGGQESLR-SLWDKYY--AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL  119 (167)
T ss_pred             EEEEEEECCCChhhH-HHHHHHh--CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence            789999999543211 1112223  68999999988764 345555555554432    2445 6689999883

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=95.88  E-value=0.0076  Score=54.06  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=27.1

Q ss_pred             ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         54 SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        54 s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -|.+|+||||+...||..+.  ....+|.+-+.+.
T Consensus         2 ~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i   34 (325)
T TIGR01187         2 LGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDV   34 (325)
T ss_pred             cCCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence            47899999999999999988  6777887755444

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.87  E-value=0.012  Score=52.68  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+.|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        52 Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~   90 (320)
T PRK13631         52 NKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI   90 (320)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence            33455558999999999999999998  7777887755443

>cd01895 EngA2 EngA2 subfamily

Probab=95.87  E-value=0.15  Score=40.36  Aligned_cols=66  Identities=17%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             ccEEEEcCCCCCCh-------HH---HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD-------EH---LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~-------~~---~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .++.++|+|+....       +.   ......+  ..+|.++++++...........++..+...+.+ +.+++|+++.
T Consensus        50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl  125 (174)
T cd01895          50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI--ERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL  125 (174)
T ss_pred             eeEEEEECCCCccccchhccHHHHHHHHHHHHH--hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence            56889999963211       11   1122223  478989999887554333444556666656655 5688999873

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=95.86  E-value=0.0072  Score=59.93  Aligned_cols=41  Identities=32%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |++|+||||+...|+..+.  ....+|.+-+.|...
T Consensus       483 G~~vaiv-G~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~  523 (694)
T TIGR01846       483 GEFIGIV-GPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAI  523 (694)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhh
Confidence            4455555 8999999999999999999  778888886666543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=95.85  E-value=0.0098  Score=50.69  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  .....|.+-+.+.
T Consensus        25 Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~   63 (235)
T cd03299          25 GDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDI   63 (235)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEc
Confidence            33444558999999999999999988  7777777765544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.85  E-value=0.036  Score=46.73  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=24.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++-|+.|+||||+|..|    +     .++++++.|..
T Consensus        13 ~~~liyG~~G~GKtt~a~~~----~-----~~~~~~~~d~~   44 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYL----P-----GKTLVLSFDMS   44 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhc----C-----CCCEEEecccc
Confidence            44677799999999987766    3     26889999874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=95.84  E-value=0.28  Score=38.62  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=42.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-------CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-------IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-------~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.-.  ......... ..+|.+|++.+.+. .++.....++..+.+..       ...+.+|.|+.+.
T Consensus        49 ~~l~i~Dt~G~~~--~~~~~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  122 (168)
T cd04119          49 VRVNFFDLSGHPE--YLEVRNEFY-KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL  122 (168)
T ss_pred             EEEEEEECCccHH--HHHHHHHHh-ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence            7889999996422  222222222 57899999987754 56667777777665431       2346788999883

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=95.84  E-value=0.14  Score=41.59  Aligned_cols=150  Identities=15%  Similarity=0.096  Sum_probs=75.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+-+..+.+..|=||||-|..+|....  -.|+||+++-+=-..    ...|...  .....        ..++.+.-.+
T Consensus        27 ~~Gli~V~TG~GKGKTTAAlG~alRa~--GhG~rv~vvQFiKg~----~~~GE~~--~~~~~--------~~~v~~~~~~   90 (198)
T COG2109          27 EKGLIIVFTGNGKGKTTAALGLALRAL--GHGLRVGVVQFIKGG----WKYGEEA--ALEKF--------GLGVEFHGMG   90 (198)
T ss_pred             ccCeEEEEecCCCChhHHHHHHHHHHh--cCCCEEEEEEEeecC----cchhHHH--HHHhh--------ccceeEEecC
Confidence            344555556678999999999999998  899999998652111    0000000  00000        1223333322


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCC-----CCChHHHHHHHHhhc-CCCcEEEEecCCchhh
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP-----GTSDEHLSLVQYLKG-LPDIGAIVVTTPQEVS  200 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~-----~~~~~~~~~~~~l~~-~~ad~vliv~~~~~~s  200 (294)
                      ....................+....+.+... .||+||+|.-.     ++-+ .-.++..+.. ..-.+||+.-.....+
T Consensus        91 ~g~tw~~~~~~~d~~aa~~~w~~a~~~l~~~-~ydlviLDEl~~al~~g~l~-~eeV~~~l~~kP~~~~vIiTGr~ap~~  168 (198)
T COG2109          91 EGFTWETQDREADIAAAKAGWEHAKEALADG-KYDLVILDELNYALRYGLLP-LEEVVALLKARPEHTHVIITGRGAPPE  168 (198)
T ss_pred             CceeCCCcCcHHHHHHHHHHHHHHHHHHhCC-CCCEEEEehhhHHHHcCCCC-HHHHHHHHhcCCCCcEEEEECCCCCHH
Confidence            1111111100000011222344444445433 49999999872     1211 1123333322 2344455555556688


Q ss_pred             HHHHHHHHHHHHhc
Q psy11347        201 LLDVRKEIDFCRKV  214 (294)
Q Consensus       201 ~~~~~~~l~~l~~~  214 (294)
                      +-+...++..++..
T Consensus       169 lie~ADlVTEm~~v  182 (198)
T COG2109         169 LIELADLVTEMRLV  182 (198)
T ss_pred             HHHHHHHHhhcccc
Confidence            88888888877644

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.84  E-value=0.013  Score=49.40  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~   62 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGH   62 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence            344555558999999999999999887  66667776443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=95.83  E-value=0.0097  Score=54.18  Aligned_cols=38  Identities=29%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCC--CcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNES--VDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g--~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...||..+.  ...  .+|.+-+.+.
T Consensus        32 e~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~   71 (362)
T TIGR03258        32 ELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDL   71 (362)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEEC
Confidence            3455558899999999999999888  666  7777765554

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=95.82  E-value=0.024  Score=53.93  Aligned_cols=40  Identities=23%  Similarity=0.296  Sum_probs=28.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||+...|+..+.  .  ...+|.+-+.+.
T Consensus        26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~--~~~~~G~i~~~g~~~   67 (500)
T TIGR02633        26 PGECVGLCGENGAGKSTLMKILSGVYP--HGTWDGEIYWSGSPL   67 (500)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEEC
Confidence            344555559999999999999999776  4  356676655443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2ph1_A	262	Crystal Structure Of Nucleotide-Binding Protein Af2		2e-35
3kb1_A	262	Crystal Structure Of The Nucleotide-Binding Protein		2e-33
3vx3_A	248	Crystal Structure Of [nife] Hydrogenase Maturation		8e-14

>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382 From Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr165 Length = 262

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 63  TFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE-NLS 121
           T T LLA   A+  + V  G+LD D  GPS+P + GL N ++  SA G  PV  ++  + 
Sbjct: 34  TVTALLAVHYARQGKKV--GILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIK 91
Query: 122 VMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181
           V S  FLL   +  VIWRGP     IR+FL  V WG  L++LLID PPGT D  L++ Q 
Sbjct: 92  VXSXQFLLPKENTPVIWRGPLIAGXIREFLGRVAWGE-LDHLLIDLPPGTGDAPLTVXQD 150
Query: 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFP 241
            K     G +VV+TPQE++ + V K I+   + N  ++G+VEN + FVCP C   S IF 
Sbjct: 151 AK---PTGVVVVSTPQELTAVIVEKAINXAEETNTSVLGLVENXSYFVCPNCGHKSYIFG 207
Query: 242 KDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
           +  G  E +  + ++ F  S+PI+  + +  D G
Sbjct: 208 EGKG--ESLAKKYNIGFFTSIPIEEELIKLADSG 239

>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226 In Complex With Adp From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target Gr157 Length = 262

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 63  TFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE-NLS 121
           T T LLA   AK  + V  G+LD D  GPS+P + GL   +V  S  G  PV  +   + 
Sbjct: 34  TVTALLAVHYAKQGKKV--GILDADFLGPSIPHLFGLEKGKVAVSDEGLEPVLTQRLGIK 91
Query: 122 VMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181
           V SI FLL   +  VIWRGP     IR+FL  V WG  L+YLLID PPGT D  L++ Q 
Sbjct: 92  VXSIQFLLPKRETPVIWRGPLIAGXIREFLGRVAWGE-LDYLLIDLPPGTGDAPLTVXQD 150
Query: 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFP 241
            K  P+ GA++V+TPQE++   V K I    +    ++G+VEN A F CP C + + +F 
Sbjct: 151 AK--PN-GAVIVSTPQELTAAVVEKAITXAEQTKTAVLGIVENXAYFECPNCGERTYLF- 206
Query: 242 KDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
              G A ++  +  + F+  +PID  + +  D G
Sbjct: 207 -GEGKASELARKYKIEFITEIPIDSDLLKLSDLG 239

>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein Hypb From Thermococcus Kodakarensis Kod1 Length = 248

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 18/199 (9%)
Query: 68  LARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127
           LA VLA+    V  G+LDLD  G S   ++G   ++  +   G  P  +   +  M+I +
Sbjct: 40  LALVLAEKGYRV--GLLDLDFHGASDHVILGFEPKEFPEEDRGVVPPTVH-GIKFMTIAY 96
Query: 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPD 187
              + D     RG + +  + + L+   W + L+YL+ID PPG  D+ L ++++LK    
Sbjct: 97  Y--TEDRPTPLRGKEISDALIELLTITRW-DELDYLVIDMPPGLGDQLLDVLRFLKRGE- 152
Query: 188 IGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGA 247
              +VV TP ++SL  VRK I+  ++    +IGVVENM         +  ++   D    
Sbjct: 153 --FLVVATPSKLSLNVVRKLIELLKEEGHKVIGVVENMK-------LRSEQL--DDEKDV 201
Query: 248 EKMCAELSVPFLGSVPIDP 266
           EK+  E  VP+L  +P  P
Sbjct: 202 EKLAEEFGVPYLVGIPFYP 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	1e-118
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	8e-32
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	1e-16
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	2e-16
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	2e-15
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
3cwq_A	209	Para family chromosome partitioning protein; alpha	2e-07
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	2e-07
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	9e-07
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	2e-06
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	2e-06
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	1e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	6e-05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	7e-05
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	2e-04
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	2e-04
3igf_A	374	ALL4481 protein; two-domained protein consisting o	3e-04
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	5e-04
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	5e-04
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	6e-04
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	6e-04
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	7e-04
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	8e-04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	9e-04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	9e-04

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Length = 262

 Score =  338 bits (869), Expect = e-118
 Identities = 101/260 (38%), Positives = 145/260 (55%), Gaps = 10/260 (3%)

Query: 37  ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
           E +K  L  +K ++ V+SGKGGVGKST T LLA   A+  + V  G+LD D  GPS+P +
Sbjct: 8   EEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKV--GILDADFLGPSIPIL 65

Query: 97  MGLLNEQVHQSASGWSPVFLEE-NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD 155
            GL N ++  SA G  PV  ++  + VMS+ FLL   +  VIWRGP    MIR+FL  V 
Sbjct: 66  FGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVA 125

Query: 156 WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN 215
           WG  L++LLID PPGT D  L+++Q        G +VV+TPQE++ + V K I+   + N
Sbjct: 126 WGE-LDHLLIDLPPGTGDAPLTVMQDA---KPTGVVVVSTPQELTAVIVEKAINMAEETN 181

Query: 216 IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
             ++G+VENM+ FVCP C   S IF    G  E +  + ++ F  S+PI+  + +  D G
Sbjct: 182 TSVLGLVENMSYFVCPNCGHKSYIF--GEGKGESLAKKYNIGFFTSIPIEEELIKLADSG 239

Query: 276 T-SAIDTPSACVDAIQQIVQ 294
                +          +   
Sbjct: 240 RIEEYEKDWFESAPFLEHHH 259

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Length = 254

 Score =  117 bits (295), Expect = 8e-32
 Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 60/276 (21%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH--- 105
           K+ V +GKGGVGK+T    L +++A   + +    +D D     + + +GL  E+ +   
Sbjct: 2   KLAV-AGKGGVGKTTVAAGLIKIMASDYDKI--YAVDGDP-DSCLGQTLGLSIEEAYAIT 57

Query: 106 ---------QSASGWSPVFL----------------EENLSVMSIGFLLNSPDDAVIWRG 140
                    +  +G   + +                ++ + ++ +G              
Sbjct: 58  PLIEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMG----EIKKGGSQCY 113

Query: 141 PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
            ++N+ +   +S +      E +++D   G   EHL+         D+  I V  P   S
Sbjct: 114 CRENSFLGSVVSALFLDKK-EAVVMDMGAGI--EHLTRGTAKAV--DM-MIAVIEPNLNS 167

Query: 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE--LSVPF 258
           +            + I  +  V N                   +   EK+  +       
Sbjct: 168 IKTGLNIEKLAGDLGIKKVRYVINKV----------------RNIKEEKLIKKHLPEDKI 211

Query: 259 LGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ 294
           LG +P + L      +G     + +     +  I Q
Sbjct: 212 LGIIPYNELFIELSLKGEEIWQSTNPAFVNLHDIYQ 247

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373

 Score = 78.0 bits (192), Expect = 1e-16
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 35/226 (15%)

Query: 52  VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-------V 104
             S  GGVG ST     A   A   +   V  L+++ CG +                   
Sbjct: 148 FTSPCGGVGTSTVAAACAIAHANMGKK--VFYLNIEQCG-TTDVFFQAEGNATMSDVIYS 204

Query: 105 HQSASGWSPVFLEENLSVMSIGFLL----NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL 160
            +S      + LE  +     G           D +       +T+I       +     
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDN----Y 260

Query: 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV-NIPII 219
           + +++D P     E L L+           IVV    ++S     +  +    +     I
Sbjct: 261 DEIIVDLPFSLEIEKLKLLS----KAWR-IIVVNDGSQLSNYKFMRAYESVVLLEQNDDI 315

Query: 220 GVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265
            ++ NM   +  K +  +     +          +S+  +G  P  
Sbjct: 316 NIIRNMNM-IYNKFSNKNSEMLSN----------ISIKTIGGAPRY 350

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 63/265 (23%)

Query: 52  VLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQ--- 103
           V SGKGG GK+T T  L   LA+    V     D+ + +L++       ++G+       
Sbjct: 7   VASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLEL-------ILGMEGLPVTL 59

Query: 104 ---VHQSASGWSPVFLEE-------NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSE 153
              +   A       ++E        + V+  G       + +    P+K   +   L++
Sbjct: 60  QNVLAGEAR------IDEAIYVGPGGVKVVPAG----VSLEGLRKANPEK---LEDVLTQ 106

Query: 154 VDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK 213
           +      + LL+D P G     +  +           ++V  P+  S+ D  K      +
Sbjct: 107 IM--ESTDILLLDAPAGLERSAVIAI-----AAAQELLLVVNPEISSITDGLKTKIVAER 159

Query: 214 VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD 273
           +   ++GVV N  T         +           ++ A L    +G +P DP V R   
Sbjct: 160 LGTKVLGVVVNRIT---------TL---GIEMAKNEIEAILEAKVIGLIPEDPEVRRAAA 207

Query: 274 EGTSAI----DTPSACVDAIQQIVQ 294
            G   +    ++P+A   AI ++  
Sbjct: 208 YGKPVVLRSPNSPAA--RAIVELAN 230

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Length = 260

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 48/270 (17%), Positives = 93/270 (34%), Gaps = 59/270 (21%)

Query: 52  VLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQVHQ 106
           V SGKGGVGK+T +  +A  LA+  +        +G+ +LD+       +MG        
Sbjct: 7   VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDL-------IMGC------- 52

Query: 107 SASGWSPVFLEENLSVMSIGFLLN---SPDDAVIWRGPKKNTM----------------- 146
                      E   V     ++    + + A+I +  +   +                 
Sbjct: 53  -----------ERRVVYDFVNVIQGDATLNQALI-KDKRTENLYILPASQTRDKDALTRE 100

Query: 147 -IRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVR 205
            + + L ++      E+++ D+P G     L  + +        AI+ T P+  S+ D  
Sbjct: 101 GVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALYFADE-----AIITTNPEVSSVRDSD 154

Query: 206 KEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265
           + +      +       E +   +      P  +   D    E +   L +  +G +P D
Sbjct: 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPED 214

Query: 266 PLVTRHCDEGTSAIDTP-SACVDAIQQIVQ 294
             V R  ++G   I    +    A    V+
Sbjct: 215 QSVLRASNQGEPVILDINADAGKAYADTVE 244

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Length = 245

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 41/260 (15%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL------LNEQ 103
              +S KGG G S      A  L++  +   V  +D+ +    +   +        L + 
Sbjct: 7   FGFVSAKGGDGGSCIAANFAFALSQEPDI-HVLAVDISLPFGDLDMYLSGNTHSQDLADI 65

Query: 104 VHQSASGWSPVFLEENLSVMSIGFLL----NSPDDAVIWRGPKKNTMIRQFLSEVDWGNG 159
            + S        L+  +  +S    L     + +  V     + + +I    S  D    
Sbjct: 66  SNASDR-LDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYD---- 120

Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI- 218
             Y+++D         + ++++L         +VTTP   SL    + +  C++   PI 
Sbjct: 121 --YIIVDFGASIDHVGVWVLEHLD-----ELCIVTTPSLQSLRRAGQLLKLCKEFEKPIS 173

Query: 219 -IGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC-DEGT 276
            I ++ N A          S I   +      +   +  P    +P D    +     G 
Sbjct: 174 RIEIILNRA-------DTNSRITSDE------IEKVIGRPISKRIPQDEDAMQESLLSGQ 220

Query: 277 SAI--DTPSACVDAIQQIVQ 294
           S +     S     I     
Sbjct: 221 SVLKVAPKSQLSKTIVDWAL 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 6e-13
 Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 92/314 (29%)

Query: 36  IELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLAKSNESV----DVGV--LDLDI 88
              ++  L  ++  K +++ G  G GK+    +   V    +  V    D  +  L+L  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVC--LSYKVQCKMDFKIFWLNLKN 191

Query: 89  CG--PSMPRMMGLLNEQV----HQSASGWSPVFLEENLSVMSIGFLLNSP---------D 133
           C    ++  M+  L  Q+       +   S + L  +     +  LL S           
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 134 DAVIWRGPKKNTMIRQF------L------SEVDWGNGLEY---LLIDTPPG-TSDEHLS 177
           +  +            F      L         D+ +        L       T DE  S
Sbjct: 252 N--VQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 178 LV-QYL----KGLPDIGAIVVTTPQEVSLL-----DVRKEIDFCRKVNIPIIGVVENMAT 227
           L+ +YL    + LP    ++ T P+ +S++     D     D  + VN       + + T
Sbjct: 306 LLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTT 357

Query: 228 FV--CPKCTKPSE---------IFPKDSGGAEKMCAELSVPFLGSVPIDP---------- 266
            +       +P+E         +FP  +     +   LS+ +   +  D           
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKY 414

Query: 267 -LVTRHCDEGTSAI 279
            LV +   E T +I
Sbjct: 415 SLVEKQPKESTISI 428

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 49/177 (27%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
           + V S KGGVGK+T    L+  LA      +  ++D D   P              +SA+
Sbjct: 3   ITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGD---P-----------N--RSAT 43

Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
           GW                  + P   V  R   K                 + ++IDT  
Sbjct: 44  GWGK--------------RGSLPFKVVDERQAAKYA------------PKYQNIVIDTQA 77

Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMA 226
              DE L     L    D+  ++ +TP  ++L  +   I+  +K+      ++  + 
Sbjct: 78  RPEDEDLEA---LADGCDL-LVIPSTPDALALDALMLTIETLQKLGNNRFRILLTII 130

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 46/180 (25%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
           +  L+ KGG GK+T    +A  L++S  +  + V+D D   P           Q   S +
Sbjct: 4   ISFLNPKGGSGKTTAVINIATALSRSGYN--IAVVDTD---P-----------Q--MSLT 45

Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
            WS             G    +  D       K    IR+ L++ D      + ++D   
Sbjct: 46  NWS-----------KAG---KAAFDVFTAASEKDVYGIRKDLADYD------FAIVDGAG 85

Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIP---IIGVVENMA 226
             S    + V     + D+  I+  TP  +        +                +    
Sbjct: 86  SLSVITSAAVM----VSDL-VIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 33/219 (15%), Positives = 80/219 (36%), Gaps = 51/219 (23%)

Query: 33  DPGIELVKS-----HLSNV--KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL 84
           D  +E V++     H + +  ++ +L+++G     GK+  ++ LA V+A+S++ V   + 
Sbjct: 82  DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKV---LF 138

Query: 85  -DLDICGPSMPRMMGL---------------LNEQVHQSASGWSPVFLEENLSVMSIGFL 128
            D D+       +  +               LN+ +            +    V++ G +
Sbjct: 139 IDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFG--------KGGFDVITRGQV 190

Query: 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP--GTSDEHLSLVQYLKGLP 186
              P+ + +    +   ++       D       +++DTPP    SD        +    
Sbjct: 191 --PPNPSELLMRDRMRQLLEWANDHYD------LVIVDTPPMLAVSD-----AAVVGRSV 237

Query: 187 DIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
              +++V      +  +V   +    +  + I G + N 
Sbjct: 238 G-TSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNG 275

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Length = 286

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 65/226 (28%)

Query: 33  DPGIELVKS-----HLSNV--KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL 84
           D  IE ++S     H + +  ++ VL+++G    +G +     LA V++++N+ V   +L
Sbjct: 70  DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRV---LL 126

Query: 85  -DLDICGPSMPRMMGL---------------LNEQVHQSASGWSPVFLEENLSVMSIGF- 127
            D D+       ++G                +      ++             ++  G  
Sbjct: 127 IDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS--------IAKFDLIPRGQV 178

Query: 128 ------LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP--GTSDEHLSLV 179
                 LL S          +   ++       D       +LIDTPP    +D      
Sbjct: 179 PPNPSELLMS---------ERFAELVNWASKNYD------LVLIDTPPILAVTD-----A 218

Query: 180 QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
             +        ++V      +L +V   +    +  IP+ GV+ N 
Sbjct: 219 AIVGRHVG-TTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNS 263

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Length = 271

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 60/206 (29%)

Query: 47  KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL-DLDICGPSMPRMMGL----- 99
             + +V++ +  G GKST    LA   A++       ++ D D+  P+   +  L     
Sbjct: 81  AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKT---LIVDGDMRKPTQHYIFNLPNNEG 137

Query: 100 ----------LNEQVHQSASGWSPVFLEENLSVMSIGF-------LLNSPDDAVIWRGPK 142
                       + +  +          E+L V++ G        L+ S           
Sbjct: 138 LSSLLLNWSTYQDSIISTE--------IEDLDVLTSGPIPPNPSELITS---------RA 180

Query: 143 KNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLV---QYLKGLPDIGAIVVTTPQEV 199
              +    L   +      +++IDTPP      ++ V   Q          + V   +  
Sbjct: 181 FANLYDTLLMNYN------FVIIDTPP------VNTVTDAQLFSKFTG-NVVYVVNSENN 227

Query: 200 SLLDVRKEIDFCRKVNIPIIGVVENM 225
           +  +V+K  +        ++GVV N 
Sbjct: 228 NKDEVKKGKELIEATGAKLLGVVLNR 253

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 32/184 (17%)

Query: 26  SGAAKSVDPGIELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
           S      +   +L+   L +  +   V ++G  GVGKST    L   L +      V VL
Sbjct: 56  STRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHR--VAVL 113

Query: 85  DLDICGPSMP-----------RMMGLLNEQ---VHQSASGWSPVFLEENLSVMSIGFLLN 130
            +D   PS             RM  L       +  S +  +   +       ++  L  
Sbjct: 114 AVD---PSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATR-ETVVLLEA 169

Query: 131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK-GLPDIG 189
           +  D ++         +    SEV   N ++  ++ T   T D+    +Q +K G+ ++ 
Sbjct: 170 AGFDVILIE------TVGVGQSEVAVANMVDTFVLLTLARTGDQ----LQGIKKGVLELA 219

Query: 190 AIVV 193
            IVV
Sbjct: 220 DIVV 223

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 26  SGAAKSVDPGIELVKSHLSNVKH-KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
           S  A       +L+ + L        + ++G  GVGKST  + L  +L  +     V VL
Sbjct: 32  SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK--VAVL 89

Query: 85  DLDICGPSMPRMMG 98
            +D   PS  R  G
Sbjct: 90  AVD---PSSTRTGG 100

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 26  SGAAKSVDPGIELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
           S   +      +L+ + +    + + + ++G  G GKSTF      +L +      V V+
Sbjct: 33  SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK--VAVI 90

Query: 85  DLDICGPSMPRMMG 98
            +D   PS P   G
Sbjct: 91  AVD---PSSPVTGG 101

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 324

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 25/161 (15%)

Query: 41  SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL 100
              +  K   + + GKGGVGK+T +   A  +A+S +   V   D     P+   +   L
Sbjct: 7   FKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD-----PA-HSLSDSL 60

Query: 101 NEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGN 158
             ++     G +P  + ENL  + I      P+ A+       ++          +    
Sbjct: 61  EREI-----GHTPTKITENLYAVEI-----DPEVAMEEYQAKLQEQ---AAMNPGMGLDM 107

Query: 159 GLEYL-LIDTPPGTSDEHLSLVQYLKGL--PDIGAIVVTTP 196
             + + +    PG  DE  +  Q+L+ +   +   ++  T 
Sbjct: 108 LQDQMDMASMSPGI-DEAAAFDQFLRYMTTDEYDIVIFDTA 147

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 31 SVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
          S DP    +++ L     K + + GKGGVGK+T +  LA  ++K   SV
Sbjct: 2  SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSV 50

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Length = 374

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
            +L   GK GV ++      A++LA   + V +     +   P +P ++           
Sbjct: 3   LILTFLGKSGVARTKIAIAAAKLLASQGKRVLL-AGLAE---PVLPLLLEQ--------T 50

Query: 109 SGWSPVFLEENLSVMSI 125
               P  +  NL V+  
Sbjct: 51  LTPDPQQIAPNLEVVQF 67

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 31/156 (19%)

Query: 53  LSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-----------RMMGLLN 101
           LSG  G GKSTF     ++L +      + VL +D   PS             RM  L  
Sbjct: 79  LSGPPGAGKSTFIEYFGKMLTERGHK--LSVLAVD---PSSCTSGGSLLGDKTRMTELSR 133

Query: 102 EQ---VHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGN 158
           +    +  S +  +   +    +  +I     +  D ++     +   + Q  SE    +
Sbjct: 134 DMNAYIRPSPTRGTLGGVTRTTN-EAILLCEGAGYDIILI----ETVGVGQ--SEFAVAD 186

Query: 159 GLEYLLIDTPPGTSDEHLSLVQYLK-GLPDIGAIVV 193
            ++  ++  PP   DE    +Q +K G+ ++  +V 
Sbjct: 187 MVDMFVLLLPPAGGDE----LQGIKRGIIEMADLVA 218

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 61/204 (29%)

Query: 49  KVLVL-SGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNE 102
           +++ + SGKGG GK+T T  L+  L      V     D+ + +L +       ++G+ + 
Sbjct: 3   RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSL-------VLGVDDP 55

Query: 103 QV--HQSASGWSPVFLE--------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLS 152
            V  H   +G +   +E        +N+ V+          + V+   P+K   + + + 
Sbjct: 56  DVTLHDVLAGEAN--VEDAIYMTQFDNVYVLPGAVDW----EHVLKADPRK---LPEVIK 106

Query: 153 EVDWGNGLEYLLIDTPPG----------TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-L 201
            +   +  +++LID P G          + +E               A++VT P E+S L
Sbjct: 107 SLK--DKFDFILIDCPAGLQLDAMSAMLSGEE---------------ALLVTNP-EISCL 148

Query: 202 LDVRKEIDFCRKVNIPIIGVVENM 225
            D  K     +K  + I+G V N 
Sbjct: 149 TDTMKVGIVLKKAGLAILGFVLNR 172

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 16/158 (10%)

Query: 47  KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
             K + + GKGGVGK+T ++ +A  LA +  +    ++  D   P+   +     ++   
Sbjct: 17  SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD---PA-HNLSDAFCQKF-- 70

Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLID 166
                  V    NLS M I      P+ A+      +    +      D    +   +  
Sbjct: 71  -GKDARKVEGLPNLSCMEI-----DPEAAMSDL---QQQASQYNNDPNDPLKSMMSDMTG 121

Query: 167 TPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204
           + PG  DE LS ++ LK + +   +             
Sbjct: 122 SIPGI-DEALSFMEVLKHIKNQKVLEGEDNSNAISYKT 158

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 43  LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102
           L     + + + GKGGVGK+T +  LA  LAK   SV +   D     P+   +    ++
Sbjct: 11  LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD-----PA-HNLSDAFSQ 64

Query: 103 QVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE- 161
           +          V   +NL  M I      P+ ++         ++     + D G G   
Sbjct: 65  KF---GKEARLVEGFDNLYAMEI-----DPNGSM-------QDLLAGQTGDGDAGMGGVG 109

Query: 162 -YLLIDTPPGTSDEHLSLVQYLKGL--PDIGAIVVTTP 196
               +       DE +S  + LK +       IV  T 
Sbjct: 110 VMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTA 147

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 46/165 (27%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESV------------DVGVLDLDICGPSMPRM 96
             L  +GKGGVGK++ +   A  LA+  + V               V    I   +  + 
Sbjct: 9   PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQ--VFSQTI--GNTIQ- 63

Query: 97  MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAV-----IWRGPKKNTMIRQFL 151
                            +     LS + I      P  A          P K  +    +
Sbjct: 64  ----------------AIASVPGLSALEI-----DPQAAAQQYRARIVDPIKGVLPDDVV 102

Query: 152 SEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196
           S ++    L            DE   L+     L     I+  T 
Sbjct: 103 SSIN--EQLSGACTTEIAAF-DEFTGLLTDASLLTRFDHIIFDTA 144

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 35  GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
           G++ ++  L     ++ + +G+ GVGKS+  N L
Sbjct: 205 GLKPLEEAL---TGRISIFAGQSGVGKSSLLNAL 235

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 35  GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
           GI+ +  +L   +  + +L+G  GVGKS+  + L
Sbjct: 155 GIDELVDYL---EGFICILAGPSGVGKSSILSRL 185

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 35  GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
           GIE +K +L   K K+  ++G  GVGKS+  N +
Sbjct: 159 GIEELKEYL---KGKISTMAGLSGVGKSSLLNAI 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	100.0
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.98
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.98
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.97
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.97
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.97
3end_A	307	Light-independent protochlorophyllide reductase ir	99.97
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.97
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.97
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.97
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.97
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.96
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.96
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.95
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.95
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.95
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.95
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.93
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.93
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.93
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.91
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.91
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.9
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	99.9
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	99.89
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	99.87
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	99.85
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	99.85
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	99.82
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.82
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.76
3igf_A	374	ALL4481 protein; two-domained protein consisting o	99.75
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.72
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	99.61
2xxa_A	433	Signal recognition particle protein; protein trans	99.6
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	99.58
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.57
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	99.54
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.51
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.4
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.37
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.23
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.21
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.09
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.97
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.82
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.57
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.53
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.23
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.11
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.86
2og2_A	359	Putative signal recognition particle receptor; nuc	97.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.73
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.73
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	97.66
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.66
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.62
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.53
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.46
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.45
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.43
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.39
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.37
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.37
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.31
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.29
2g0t_A	350	Conserved hypothetical protein; structural genomic	97.28
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.26
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.24
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.22
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.21
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.2
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.18
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.16
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.15
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.14
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.14
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.02
3io5_A	333	Recombination and repair protein; storage dimer, i	97.01
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.99
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.96
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.96
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.93
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.92
1g6h_A	257	High-affinity branched-chain amino acid transport	96.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.88
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.85
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.82
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.81
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.81
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.8
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.8
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.79
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.77
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.75
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.75
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.75
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.74
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.74
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.74
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.7
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.68
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.66
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.65
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.62
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.62
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.58
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.58
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.57
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.57
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.55
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.54
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.54
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.54
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.52
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	96.52
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.52
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.49
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.49
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.46
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.43
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.41
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.41
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.41
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.37
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.36
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.35
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.34
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.34
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.32
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.32
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.31
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	96.3
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.3
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.29
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.28
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.28
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.27
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.27
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.26
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.25
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.24
1wb1_A	482	Translation elongation factor SELB; selenocysteine	96.21
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.21
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.2
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.19
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.15
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.15
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.14
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.12
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.12
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.12
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.1
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.09
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.08
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.04
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.04
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.04
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.03
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.03
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.98
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.97
3bos_A	242	Putative DNA replication factor; P-loop containing	95.96
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.95
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	95.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.93
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.93
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	95.92
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	95.92
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	95.91
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.89
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.89
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.87
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.84
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	95.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.81
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.79
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.77
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.73
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.71
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.71
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.71
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.7
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.69
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.69
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.66
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.65
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.61
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.56
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.53
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.52
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.5
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	95.49
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.49
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.49
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.47
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.47
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.45
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.41
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.35
1via_A	175	Shikimate kinase; structural genomics, transferase	95.31
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.28
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.27
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.25
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.22
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	95.21
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.2
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.2
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.19
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.15
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.11
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	95.09
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.09
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.08
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.06
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.0
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	94.98
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.95
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.91
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	94.89
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.88
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.84
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	94.81
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.81
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.8
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.69
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.68
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.65
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.64
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.64
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.62
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.58
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.53
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.53
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.48
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.46
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.45
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.43
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.4
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.36
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.36
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.32
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.32
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.29
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.25
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.1
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.1
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.09
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.06
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.02
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.98
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	93.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.91
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.89
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.86
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	93.85
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.84
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.82
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.81
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	93.81
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.81
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.79
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.76
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	93.76
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.75
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.74
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	93.7
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	93.67
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.67
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.66
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.53
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.52
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.52
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.48
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.48
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.43
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.4
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	93.39
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.36
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.36
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.35
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.33
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.33
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	93.32
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.29
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.25
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.23
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.17
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.11
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.09
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.03
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.03
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.75
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	92.74
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.72
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.6
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.58
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.57
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.54
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.53
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	92.52
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	92.44
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.4
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	92.38
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.33
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	92.21
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.12
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	92.1
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.09
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	92.07
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	92.05
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	92.04
2qgz_A	308	Helicase loader, putative primosome component; str	92.03
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.01
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	92.0
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.98
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	91.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	91.92
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	91.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.84
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.82
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.75
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	91.75
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	91.72
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	91.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	91.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.6
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	91.52
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.44
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.41
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.38
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.34
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.34
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	91.31
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	91.28
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.21
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.19
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.16
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	91.16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.15
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	91.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	91.09
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	91.04
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	90.81
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	90.79
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	90.71
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	90.7
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.69
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	90.63
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	90.52
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.48
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.36
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	90.33
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.33
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.29
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	90.26
2fna_A	357	Conserved hypothetical protein; structural genomic	90.24
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	90.24
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	90.23
1b0u_A	262	Histidine permease; ABC transporter, transport pro	90.22
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.21
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.16
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	90.15
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.06
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.03
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	90.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	89.99
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	89.88
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	89.83
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	89.81
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	89.53
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	89.48
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	89.43
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.41
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	89.4
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	89.33
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	89.25
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	89.22
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	89.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.06
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	89.06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	89.02
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	89.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	88.97
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	88.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	88.85
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	88.76
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	88.68
3h1t_A	590	Type I site-specific restriction-modification syst	88.67
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	88.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	88.61
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	88.58
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	88.53
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	88.42
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	88.38
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	88.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	88.33
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	88.18
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	88.17
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	88.04
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	88.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	87.86
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	87.7
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	87.68
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	87.61
1tue_A	212	Replication protein E1; helicase, replication, E1E	87.58
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	87.43
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	87.4
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	87.39
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	87.19
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	87.14
2ghi_A	260	Transport protein; multidrug resistance protein, M	87.14
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	87.03
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	86.99
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	86.95
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	86.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	86.89
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	86.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	86.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	86.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	86.71
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	86.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	86.59
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	86.54
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	86.4
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	86.27
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	86.22
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	86.22

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=100.00  E-value=3.9e-33  Score=241.17  Aligned_cols=237  Identities=43%  Similarity=0.734  Sum_probs=183.4

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcce
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVF  115 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~  115 (294)
                      .....+++..|+++|+|+|+|||+||||+|.|||.+|+  ..|+||++||+|++++++..+|+.....+......+.+..
T Consensus         7 ~~~~a~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la--~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~   84 (262)
T 2ph1_A            7 DEEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYA--RQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVL   84 (262)
T ss_dssp             HHHHHHHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEE
T ss_pred             hhhhhhhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccc
Confidence            45567788999999999999999999999999999999  8899999999999998888999887554222222222222


Q ss_pred             -eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        116 -LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       116 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                       ..++++++|.+....................++++++.+.+.+ |||||||+||+.+...+.....   ..+|.+|+|+
T Consensus        85 ~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-yD~ViID~pp~~~~~~~~~~~~---~~aD~viiv~  160 (262)
T 2ph1_A           85 TQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGE-LDHLLIDLPPGTGDAPLTVMQD---AKPTGVVVVS  160 (262)
T ss_dssp             CTTTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCS-CSEEEEECCSSSSSHHHHHHHH---HCCSEEEEEE
T ss_pred             cCCCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccC-CCEEEEECcCCCchHHHHHHhh---ccCCeEEEEe
Confidence             3478999998876654443322222334557788888775334 9999999999987654433322   2689999999


Q ss_pred             CCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347        195 TPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE  274 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~  274 (294)
                      .++..++..+.++++.+++.+.+..++|+|+++.+++.|..+..++.  ....+++.+.+|.++++.||+++.+.++...
T Consensus       161 ~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~  238 (262)
T 2ph1_A          161 TPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFG--EGKGESLAKKYNIGFFTSIPIEEELIKLADS  238 (262)
T ss_dssp             CSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTC--CCCHHHHHHHTTCSEEEECCBCHHHHHHHHT
T ss_pred             cCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCccccccccccc--ccHHHHHHHHcCCCeEEEeeCchHHHHhccC
Confidence            99999999999999999998999999999999876555544444331  2246778888999999999999999999999


Q ss_pred             Cccccc
Q psy11347        275 GTSAID  280 (294)
Q Consensus       275 g~~v~~  280 (294)
                      |+|++-
T Consensus       239 g~~~~~  244 (262)
T 2ph1_A          239 GRIEEY  244 (262)
T ss_dssp             TCGGGC
T ss_pred             Cceeec
Confidence            999984

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.98  E-value=4.2e-32  Score=233.95  Aligned_cols=225  Identities=20%  Similarity=0.235  Sum_probs=174.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcce----
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPVF----  115 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~~----  115 (294)
                      |+++|+|+|+|||+||||+|.|||.+|+  ..|+||++||+|++.+++..+||.....      .......+.+..    
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~   78 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIATGLA--QKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDK   78 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccC
Confidence            6899999999999999999999999999  8999999999999888999999887642      111122222211    


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                      ..++++++|.+....        ........+.++++.++.. .||+||||+|++.+......+     ..+|.+|+|+.
T Consensus        79 ~~~~l~~lp~~~~~~--------~~~~~~~~~~~~l~~l~~~-~yD~viiD~p~~~~~~~~~~l-----~~ad~vi~v~~  144 (260)
T 3q9l_A           79 RTENLYILPASQTRD--------KDALTREGVAKVLDDLKAM-DFEFIVCDSPAGIETGALMAL-----YFADEAIITTN  144 (260)
T ss_dssp             SSTTEEEECCCSCCC--------TTSSCHHHHHHHHHHHHHT-TCSEEEEECCSSSSHHHHHHH-----HTCSEEEEEEC
T ss_pred             CCCCEEEecCCCccc--------hhhCCHHHHHHHHHHHhcc-CCCEEEEcCCCCCCHHHHHHH-----HhCCEEEEEec
Confidence            237899999875421        1122345788888888731 499999999999886444433     47999999999


Q ss_pred             CchhhHHHHHHHHHHHHhcCC--------CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        196 PQEVSLLDVRKEIDFCRKVNI--------PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~~~~--------~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      ++..++..+.++++.++..+.        ...++|+|+++.+       ........ ..+++.+.+|.++++.||+++.
T Consensus       145 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~Ip~~~~  216 (260)
T 3q9l_A          145 PEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG-------RVSRGDML-SMEDVLEILRIKLVGVIPEDQS  216 (260)
T ss_dssp             SSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH-------HHHTTSSC-CHHHHHHHHCSEEEEEEECCHH
T ss_pred             CChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc-------cccccccc-CHHHHHHHhCCceEEecCCChh
Confidence            999999999999999986642        4789999998732       11111111 2467777889999999999999


Q ss_pred             hhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347        268 VTRHCDEGTSAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       268 ~~~a~~~g~~v~~-~~s~~~~~~~~la~  294 (294)
                      +.++...|+|+++ |+++++++|++|++
T Consensus       217 ~~~a~~~g~~v~~~~~s~~~~~~~~la~  244 (260)
T 3q9l_A          217 VLRASNQGEPVILDINADAGKAYADTVE  244 (260)
T ss_dssp             HHHHHHHTCCGGGCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEECCCCHHHHHHHHHHH
Confidence            9999999999998 99999999999874

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.98  E-value=7.9e-32  Score=229.17  Aligned_cols=221  Identities=23%  Similarity=0.309  Sum_probs=173.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c----cccccCCCCcce--e-c
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q----VHQSASGWSPVF--L-E  117 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~----~~~~~~~~~~~~--~-~  117 (294)
                      |+++|+|+|+|||+||||+|.+||.+|+  ..|+||+++|+|++.++++.+||.... .    +......+.+..  . .
T Consensus         1 M~~~i~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~   78 (237)
T 1g3q_A            1 MGRIISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQF   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSS
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCC
Confidence            5789999999999999999999999999  789999999999998899999988764 1    111122232322  1 2


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      ++++++|.... .   +....   .....+.++++.++  ++||+||||+||+........+     ..+|.+|+|+.++
T Consensus        79 ~~l~~lp~~~~-~---~~~~~---~~~~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~~-----~~ad~vi~v~~~~  144 (237)
T 1g3q_A           79 DNVYVLPGAVD-W---EHVLK---ADPRKLPEVIKSLK--DKFDFILIDCPAGLQLDAMSAM-----LSGEEALLVTNPE  144 (237)
T ss_dssp             TTEEEECCCCS-H---HHHHH---CCGGGHHHHHHTTG--GGCSEEEEECCSSSSHHHHHHH-----TTCSEEEEEECSC
T ss_pred             CCEEEEeCCCc-c---chhhh---cCHHHHHHHHHHHH--hcCCEEEEECCCCcCHHHHHHH-----HHCCeEEEEecCC
Confidence            78888883211 1   10000   01346778888887  3499999999999885544333     6899999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcc
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS  277 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~  277 (294)
                      ..++..+.++++.+++.+.+..++|+|+++..       ...     ...+++.+.+|.++++.||+++.+.++...|+|
T Consensus       145 ~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~-------~~~-----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~  212 (237)
T 1g3q_A          145 ISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS-------DRD-----IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIP  212 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC-------TTC-----CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSC
T ss_pred             cccHHHHHHHHHHHHhCCCceEEEEEecCCcc-------cch-----hHHHHHHHHhCccceeeCCCChHHHHHHHcCCC
Confidence            99999999999999988888999999999742       111     235667777899999999999999999999999


Q ss_pred             ccc--CCCHHHHHHHHhhC
Q psy11347        278 AID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       278 v~~--~~s~~~~~~~~la~  294 (294)
                      +++  |+++++++|++|++
T Consensus       213 v~~~~~~~~~~~~~~~la~  231 (237)
T 1g3q_A          213 AVKYKPESKGAKAFVKLAE  231 (237)
T ss_dssp             HHHHSTTSHHHHHHHHHHH
T ss_pred             eEEeCCCCHHHHHHHHHHH
Confidence            998  89999999999874

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.97  E-value=2.1e-31  Score=227.57  Aligned_cols=221  Identities=17%  Similarity=0.206  Sum_probs=172.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhcc-ccccc----cccccCCCCc-----
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMG-LLNEQ----VHQSASGWSP-----  113 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg-~~~~~----~~~~~~~~~~-----  113 (294)
                      .++++|+|+|+|||+||||+|.|||.+|+  .. |+||++||+|++.++++.+|+ ..+..    +......++.     
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   79 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALS--QEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDT   79 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHT--TSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHH
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHH--hCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHH
Confidence            56899999999999999999999999999  87 999999999999889999884 33321    1111111111     


Q ss_pred             --ceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347        114 --VFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI  191 (294)
Q Consensus       114 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl  191 (294)
                        ....++++++|.+.......       ......+.++++.++  +.||+||||+||+.+......+     ..+|.+|
T Consensus        80 ~~~~~~~~l~~l~~~~~~~~~~-------~~~~~~l~~~l~~l~--~~yD~viiD~p~~~~~~~~~~l-----~~ad~vi  145 (245)
T 3ea0_A           80 MVQHISPSLDLIPSPATFEKIV-------NIEPERVSDLIHIAA--SFYDYIIVDFGASIDHVGVWVL-----EHLDELC  145 (245)
T ss_dssp             HSEEEETTEEEECCCSSHHHHH-------HCCHHHHHHHHHHHH--HHCSEEEEEEESSCCTTHHHHG-----GGCSEEE
T ss_pred             HhEecCCCeEEEcCCCChHhhh-------cCCHHHHHHHHHHHH--hhCCEEEEeCCCCCchHHHHHH-----HHCCEEE
Confidence              12348999999864432211       112347888888876  3399999999999876544333     5799999


Q ss_pred             EecCCchhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc-hh
Q psy11347        192 VVTTPQEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP-LV  268 (294)
Q Consensus       192 iv~~~~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~-~~  268 (294)
                      +|+.++..++..+.++++.++..+  ....++|+||++.       +..+.      .+++.+.+|.++++.||++. .+
T Consensus       146 iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~-------~~~~~------~~~~~~~~~~~v~~~ip~~~~~~  212 (245)
T 3ea0_A          146 IVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADT-------NSRIT------SDEIEKVIGRPISKRIPQDEDAM  212 (245)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTS-------CTTSC------HHHHHHHHTSCEEEEECCCHHHH
T ss_pred             EEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCC-------CCCCC------HHHHHHHhCCCeEEECCCChHHH
Confidence            999999999999999999999877  5679999999873       22222      35677778999999999995 88


Q ss_pred             hhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347        269 TRHCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       269 ~~a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .++...|+|+++  |+++++++|++|++
T Consensus       213 ~~a~~~g~~v~~~~~~s~~~~~~~~la~  240 (245)
T 3ea0_A          213 QESLLSGQSVLKVAPKSQLSKTIVDWAL  240 (245)
T ss_dssp             HHHHHHTSCHHHHCTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCCccccCCCCHHHHHHHHHHH
Confidence            999999999998  99999999999874

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.97  E-value=3.3e-31  Score=228.92  Aligned_cols=221  Identities=23%  Similarity=0.322  Sum_probs=172.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c----cccccCCCCcce--ecc
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q----VHQSASGWSPVF--LEE  118 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~----~~~~~~~~~~~~--~~~  118 (294)
                      |+++|+|+|+|||+||||+|.+||.+|+  ..|++|++||+|++.++++.+||.... .    +......+.+..  ..+
T Consensus         1 M~~~I~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~   78 (263)
T 1hyq_A            1 MVRTITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPG   78 (263)
T ss_dssp             -CEEEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGG
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHH--hCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCC
Confidence            5789999999999999999999999999  789999999999988899999988764 1    111112222221  237


Q ss_pred             CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      +++++|.....    +....   .....+.++++.++  ++||+||||+||+........+     ..+|.+|+|+.++.
T Consensus        79 ~l~~lp~~~~~----~~~~~---~~~~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~~-----~~ad~vi~v~~~~~  144 (263)
T 1hyq_A           79 GVKVVPAGVSL----EGLRK---ANPEKLEDVLTQIM--ESTDILLLDAPAGLERSAVIAI-----AAAQELLLVVNPEI  144 (263)
T ss_dssp             GCEEEECCSCH----HHHHH---HCHHHHHHHHHHHH--HTCSEEEEECCSSSSHHHHHHH-----HHSSEEEEEECSSH
T ss_pred             CeEEEcCCCCc----Chhhc---cChHHHHHHHHHHH--hhCCEEEEeCCCCCChHHHHHH-----HHCCEEEEEeCCCh
Confidence            88998833111    10000   01446778888876  3499999999999885544443     46899999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccc
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA  278 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v  278 (294)
                      .++..+.++++.+++.+.+..++|+|+++..       ..     ....+++.+.+|.++++.||+++.+.++...|+|+
T Consensus       145 ~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~-------~~-----~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v  212 (263)
T 1hyq_A          145 SSITDGLKTKIVAERLGTKVLGVVVNRITTL-------GI-----EMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPV  212 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEEEEECTT-------TH-----HHHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCH
T ss_pred             hHHHHHHHHHHHHHhcCCCeeEEEEccCCcc-------cc-----cchHHHHHHHhCCCeEEECCCCHHHHHHHHcCCce
Confidence            9999999999999988888999999998731       11     13467777788999999999999999999999999


Q ss_pred             cc--CCCHHHHHHHHhhC
Q psy11347        279 ID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       279 ~~--~~s~~~~~~~~la~  294 (294)
                      ++  |+++++++|++|++
T Consensus       213 ~~~~~~~~~~~~~~~la~  230 (263)
T 1hyq_A          213 VLRSPNSPAARAIVELAN  230 (263)
T ss_dssp             HHHCTTSHHHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHHHH
Confidence            88  89999999999873

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.97  E-value=8.3e-30  Score=211.91  Aligned_cols=192  Identities=13%  Similarity=0.119  Sum_probs=155.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      |++|+|+|+|||+||||+|.+||..|+  ..|++|+++|+|++. ++..+++...                .++++++.+
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~-~~~~~~~~~~----------------~~~~~~~~~   61 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQM-SLTNWSKAGK----------------AAFDVFTAA   61 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTC-HHHHHHTTSC----------------CSSEEEECC
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCC-CHHHHHhcCC----------------CCCcEEecC
Confidence            689999999999999999999999999  899999999999876 4444444221                236666653


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~  206 (294)
                      .                 ..+.+.++.+.  ++||+||||+||+........+     ..+|.+|+|+.++..+ ..+.+
T Consensus        62 ~-----------------~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~l-----~~ad~viiv~~~~~~~-~~~~~  116 (206)
T 4dzz_A           62 S-----------------EKDVYGIRKDL--ADYDFAIVDGAGSLSVITSAAV-----MVSDLVIIPVTPSPLD-FSAAG  116 (206)
T ss_dssp             S-----------------HHHHHTHHHHT--TTSSEEEEECCSSSSHHHHHHH-----HHCSEEEEEECSCTTT-HHHHH
T ss_pred             c-----------------HHHHHHHHHhc--CCCCEEEEECCCCCCHHHHHHH-----HHCCEEEEEecCCHHH-HHHHH
Confidence            2                 36778888887  3499999999999976544444     4689999999999999 99999


Q ss_pred             HHHHHHhcC-----CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccccc
Q psy11347        207 EIDFCRKVN-----IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID  280 (294)
Q Consensus       207 ~l~~l~~~~-----~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~  280 (294)
                      +++.+++.+     .+ +++|+||++.       +...    ...+.++++.+|.+++ +.||+++.+.++...|+|+++
T Consensus       117 ~~~~l~~~~~~~~~~~-~~vv~N~~~~-------~~~~----~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~  184 (206)
T 4dzz_A          117 SVVTVLEAQAYSRKVE-ARFLITRKIE-------MATM----LNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE  184 (206)
T ss_dssp             HHHHHHTTSCGGGCCE-EEEEECSBCT-------TEEE----EHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHhCCCCc-EEEEEeccCC-------CchH----HHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc
Confidence            999998664     34 4999999973       2222    2345677777899999 899999999999999999999


Q ss_pred             -CCCHHHHHHHHhhC
Q psy11347        281 -TPSACVDAIQQIVQ  294 (294)
Q Consensus       281 -~~s~~~~~~~~la~  294 (294)
                       |+++++++|++|++
T Consensus       185 ~~~s~~~~~~~~la~  199 (206)
T 4dzz_A          185 SSDGAAKGEIEILTK  199 (206)
T ss_dssp             SSCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHH
Confidence             99999999999873

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.97  E-value=1.2e-30  Score=224.94  Aligned_cols=223  Identities=19%  Similarity=0.244  Sum_probs=162.5

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCccee-ccC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFL-EEN  119 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~-~~~  119 (294)
                      ..+++|+|+|+|||+||||+|.|||.+|+  ..|+||++||+|++ +++..+|+.....    +.... .+.+... .++
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~-~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~~~~   79 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLA--RLGKRVLLVDLDPQ-GNATSGLGVRAERGVYHLLQGE-PLEGLVHPVDG   79 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHH--HTTCCEEEEECCTT-CHHHHHTTCCCSCCHHHHHTTC-CGGGTCEEETT
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHH--HCCCCEEEEECCCC-cCHHHHhCCCCCCCHHHHHcCC-CHHHHccccCC
Confidence            45899999999999999999999999999  78999999999997 4678888876531    11111 2322222 478


Q ss_pred             eEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347        120 LSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      ++++|++.........+  ....  ..+.++++.    ++||+||||+||+.+......+     ..+|.+|+|+.++..
T Consensus        80 l~vlp~~~~~~~~~~~l--~~~~--~~l~~~l~~----~~yD~iiiD~pp~~~~~~~~~l-----~~aD~viiv~~~~~~  146 (257)
T 1wcv_1           80 FHLLPATPDLVGATVEL--AGAP--TALREALRD----EGYDLVLLDAPPSLSPLTLNAL-----AAAEGVVVPVQAEYY  146 (257)
T ss_dssp             EEEECCCTTHHHHHHHH--TTCT--THHHHHCCC----TTCSEEEEECCSSCCHHHHHHH-----HHCSEEEEEEESSTH
T ss_pred             EEEEeCChhHHHHHHHH--hhHH--HHHHHHhcc----cCCCEEEEeCCCCCCHHHHHHH-----HHCCeEEEEecCchH
Confidence            99998864332111000  0000  345555554    3399999999999876543333     368999999999999


Q ss_pred             hHHHHHHHHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhc
Q psy11347        200 SLLDVRKEIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHC  272 (294)
Q Consensus       200 s~~~~~~~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~  272 (294)
                      ++..+.++++.++..      +.+..++|+|+++.       +....   .+..+.+.+.+|.+++ +.||++..+.++.
T Consensus       147 s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~-------~~~~~---~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~  216 (257)
T 1wcv_1          147 ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG-------RTLLA---QQVEAQLRAHFGEKVFWTVIPRNVRLAEAP  216 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT-------TCSHH---HHHHHHHHHHHGGGBCSCCCBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC-------CcHHH---HHHHHHHHHHccccccCccCCCcHHHHHHH
Confidence            999988888887642      45667999999873       21111   2334556666788877 7899999999999


Q ss_pred             cCCccccc--CCCHHHHHHHHhhC
Q psy11347        273 DEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       273 ~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ..|+|+++  |+++++++|++|++
T Consensus       217 ~~g~~v~~~~~~~~~~~~~~~la~  240 (257)
T 1wcv_1          217 SFGKTIAQHAPTSPGAHAYRRLAE  240 (257)
T ss_dssp             HHTCCHHHHCTTSHHHHHHHHHHH
T ss_pred             HcCCCHHHhCCCChHHHHHHHHHH
Confidence            99999998  89999999999873

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.97  E-value=3.9e-29  Score=213.98  Aligned_cols=216  Identities=18%  Similarity=0.189  Sum_probs=163.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------------ccc--------
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------------QSA--------  108 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------------~~~--------  108 (294)
                      +|+| ++|||+||||+|.|||..|+  ..|+||++||+|++ ++++.+||.......            ...        
T Consensus         2 kI~v-s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (254)
T 3kjh_A            2 KLAV-AGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLI   77 (254)
T ss_dssp             EEEE-ECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCC
T ss_pred             EEEE-ecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccc
Confidence            3778 88999999999999999999  89999999999997 899999988765320            000        


Q ss_pred             --CCCCcc-----eeccCeEE-EecccccCCCCcceeecCccchHHHHHHHHhh-ccCCCccEEEEcCCCCCChHHHHHH
Q psy11347        109 --SGWSPV-----FLEENLSV-MSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEV-DWGNGLEYLLIDTPPGTSDEHLSLV  179 (294)
Q Consensus       109 --~~~~~~-----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~yd~IiiD~p~~~~~~~~~~~  179 (294)
                        ..++.+     ....++++ ++.+..........    ......++++++.+ .  +.||+||||+||+.+......+
T Consensus        78 ~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~l~~--~~yD~viiD~pp~~~~~~~~~l  151 (254)
T 3kjh_A           78 LNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY----CRENSFLGSVVSALFL--DKKEAVVMDMGAGIEHLTRGTA  151 (254)
T ss_dssp             SSCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC----HHHHHHHHHHHHHHHH--TCCSEEEEEECTTCTTCCHHHH
T ss_pred             cCCchhccHHhcccccCCeEEEEEecccccCCCCCC----cchHHHHHHHHHHhcc--CCCCEEEEeCCCcccHHHHHHH
Confidence              111111     12245666 66553322222111    11114688888888 5  3499999999999876444444


Q ss_pred             HHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcC-Cce
Q psy11347        180 QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELS-VPF  258 (294)
Q Consensus       180 ~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g-~~~  258 (294)
                           ..+|.+|+|+.++..++..+.++++.+.+.+.+.+++|+|+++.               ....+++.+.++ .++
T Consensus       152 -----~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~---------------~~~~~~~~~~~~~~~~  211 (254)
T 3kjh_A          152 -----KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN---------------IKEEKLIKKHLPEDKI  211 (254)
T ss_dssp             -----TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC---------------HHHHHHHHHHSCGGGE
T ss_pred             -----HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC---------------hhHHHHHHHHhcCCcc
Confidence                 68999999999999999999999999999898889999999862               123566777776 778


Q ss_pred             eeccCCCchhhhhccCCcccccCCCHHHHHHHHhhC
Q psy11347        259 LGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ  294 (294)
Q Consensus       259 l~~Ip~~~~~~~a~~~g~~v~~~~s~~~~~~~~la~  294 (294)
                      .+.||+++.+.++...|+|+++..++++++|++|++
T Consensus       212 ~~~Ip~~~~~~~a~~~g~~~~~~~~~~~~~~~~la~  247 (254)
T 3kjh_A          212 LGIIPYNELFIELSLKGEEIWQSTNPAFVNLHDIYQ  247 (254)
T ss_dssp             EEEEECCHHHHSCSSSSCCTTSTTSTTHHHHHHHHH
T ss_pred             cccccCcHHHHHHHhCCCccccCCcHHHHHHHHHHH
Confidence            899999999999999999999944479999998873

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.97  E-value=2e-29  Score=222.60  Aligned_cols=222  Identities=16%  Similarity=0.118  Sum_probs=159.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccc----cC-----CCCcc--
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQS----AS-----GWSPV--  114 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~----~~-----~~~~~--  114 (294)
                      ..|+|+|. |||||||||+|.|||.+|+  ..|+||++||+|++.++...+++.........    ..     .+++.  
T Consensus        47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA--~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~  123 (314)
T 3fwy_A           47 GAKVFAVY-GKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF  123 (314)
T ss_dssp             CCEEEEEE-CSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred             CceEEEEE-CCCccCHHHHHHHHHHHHH--HCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhee
Confidence            37888887 7999999999999999999  89999999999999877665554443321110    00     11111  


Q ss_pred             eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ....++.+++++.........    .......+..+.+. ...+.||+|++|++++.....+  .+++  ..+|.+|+|+
T Consensus       124 ~~~~~i~~v~~~~~~~~~~~~----~~~~~~~~~~l~~~-~~~d~~D~v~iD~~~~~~~~~~--~~al--~aAd~viIvt  194 (314)
T 3fwy_A          124 EGFNGVMCVEAGGPPAGTGCG----GYVVGQTVKLLKQH-HLLDDTDVVIFDVLGDVVCGGF--AAPL--QHADQAVVVT  194 (314)
T ss_dssp             ECGGGCEEEECCCCCTTCSCT----THHHHHHHHHHHHT-TTTSSCSEEEEEECCSSCCGGG--GGGG--GTCSEEEEEE
T ss_pred             ecCCCeEEEeCCCCcccchhh----hccHHHHHHHHHhc-chhhcCceEeeccCCcchhhhh--HhHH--hhCCeEEEEe
Confidence            123678888887544332211    11112233333332 2224599999999988754332  2334  4799999999


Q ss_pred             CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      +++..++.++.++++.++..    +.++.|+|.|+...               ...++++.+.++.++++.||.+..+.+
T Consensus       195 ~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~---------------~~~v~~~a~~~~~~~lg~IP~d~~Vr~  259 (314)
T 3fwy_A          195 ANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA---------------TDEVDRFCKETNFRRLAHMPDLDAIRR  259 (314)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC---------------CHHHHHHHHHHTCCEEEEECCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc---------------hhHHHHHHHHhCCeEEEEecCchHHHH
Confidence            99999999999999988754    45678899998542               235688889999999999999999999


Q ss_pred             hccCCccccc--CCCHHHHH---HHHhhC
Q psy11347        271 HCDEGTSAID--TPSACVDA---IQQIVQ  294 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~---~~~la~  294 (294)
                      +...|+|+++  |+|+.+..   |++||+
T Consensus       260 a~~~G~pvv~~~P~S~~a~aa~~Y~~LA~  288 (314)
T 3fwy_A          260 SRLKKKTLFEMDEDQDVLAARAEYIRLAE  288 (314)
T ss_dssp             HHHTTCCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCceEEECCCChhhHHHHHHHHHHH
Confidence            9999999998  89876555   999874

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.97  E-value=8.2e-30  Score=220.89  Aligned_cols=226  Identities=16%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc---CCCCcc--eec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA---SGWSPV--FLE  117 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~---~~~~~~--~~~  117 (294)
                      |++|+| ++|||+||||+|.|||..|+  ..|+||++||+|++++.+..+++.....    +....   ..+.++  ...
T Consensus         1 M~vI~v-s~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~   77 (269)
T 1cp2_A            1 MRQVAI-YGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGY   77 (269)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECG
T ss_pred             CcEEEE-ecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCC
Confidence            578899 68999999999999999999  8999999999999988877777654331    11110   111111  234


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhc-cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD-WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP  196 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~  196 (294)
                      ++++++|.+.........    .. .......+++.+. +.++|||||||+|+......+...  +....+|.+|+|+.+
T Consensus        78 ~~l~vl~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~~~~~--~~~~~aD~viiv~~~  150 (269)
T 1cp2_A           78 GGIRCVESGGPEPGVGCA----GR-GIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGGFAMP--IREGKAQEIYIVASG  150 (269)
T ss_dssp             GGCEEEECCCCCTTSSCH----HH-HHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTTTTHH--HHTTSCCEEEEEECS
T ss_pred             CCeeEEeCCCchhhcccc----Cc-chhhHHHHHHHHHhhccCCCEEEEeCCchhhhhhhhhh--hhHhhCCEEEEeecC
Confidence            789999987543322100    00 0001112333332 124599999999986643211111  111479999999999


Q ss_pred             chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347        197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC  272 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~  272 (294)
                      +..++..+.++++.++..    +.+..++|+|+++..            ...+..+++.+.+|.++++.||+++.+.++.
T Consensus       151 ~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~------------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~  218 (269)
T 1cp2_A          151 EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA------------NEYELLDAFAKELGSQLIHFVPRSPMVTKAE  218 (269)
T ss_dssp             SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS------------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc------------hhHHHHHHHHHHcCCcccccCCCCcHHHHHH
Confidence            999999999999888753    456789999997521            1234567777888999999999999999999


Q ss_pred             cCCccccc--CCCHHHHHHHHhhC
Q psy11347        273 DEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       273 ~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ..|+|+++  |+++++++|.+|++
T Consensus       219 ~~g~~v~~~~~~s~~~~~~~~l~~  242 (269)
T 1cp2_A          219 INKQTVIEYDPTCEQAEEYRELAR  242 (269)
T ss_dssp             HTTSCHHHHCTTSHHHHHHHHHHH
T ss_pred             HcCCceEEECCCChHHHHHHHHHH
Confidence            99999998  89999999999873

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.96  E-value=1.6e-29  Score=221.43  Aligned_cols=226  Identities=16%  Similarity=0.160  Sum_probs=160.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc-----CCCCcc--e
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA-----SGWSPV--F  115 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~-----~~~~~~--~  115 (294)
                      |++|+| ++|||+||||+|.|||.+|+  ..|+||++||+|++++.+..+++.....    +....     ..+.++  .
T Consensus         2 MkvIav-s~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~   78 (289)
T 2afh_E            2 MRQCAI-YGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKA   78 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEE
T ss_pred             ceEEEE-eCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhcc
Confidence            688999 68999999999999999999  8899999999999988877776654331    11111     111111  2


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhc-cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD-WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT  194 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~  194 (294)
                      ..++++++|.+.........     .........+++.+. +.++|||||||+|+......+...  +....+|.+|+|+
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~--~~~~~aD~viiv~  151 (289)
T 2afh_E           79 GYGGVKCVESGGPEPGVGCA-----GRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMP--IRENKAQEIYIVC  151 (289)
T ss_dssp             CGGGCEEEECCCCCTTTCCH-----HHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHH--HHTTCCCEEEEEE
T ss_pred             CCCCeEEEeCCCcccccccc-----chhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhh--hhhhhCCEEEEEe
Confidence            24789999987543221100     000001123444443 124599999999986543211111  1114799999999


Q ss_pred             CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347        195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR  270 (294)
Q Consensus       195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~  270 (294)
                      .++..++..+.++++.++..    +.+..++|+|+++.       .     ...+..+++.+.+|.++++.||++..+.+
T Consensus       152 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~-------~-----~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~  219 (289)
T 2afh_E          152 SGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT-------D-----REDELIIALANKLGTQMIHFVPRDNVVQR  219 (289)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC-------T-----THHHHHHHHHHHHTSCEEEEECCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc-------h-----hHHHHHHHHHHHcCccccccCCCchhHHH
Confidence            99999999999888888653    66778999999752       1     11345677777889999999999999999


Q ss_pred             hccCCccccc--CCCHHHHHHHHhhC
Q psy11347        271 HCDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       271 a~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      +...|+|+++  |+++++++|++|++
T Consensus       220 a~~~g~~v~~~~~~s~~~~~~~~la~  245 (289)
T 2afh_E          220 AEIRRMTVIEYDPKAKQADEYRALAR  245 (289)
T ss_dssp             HHHTTSCHHHHCTTSHHHHHHHHHHH
T ss_pred             HHHcCCCceeeCCCCHHHHHHHHHHH
Confidence            9999999998  99999999999874

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.96  E-value=1.2e-28  Score=213.53  Aligned_cols=225  Identities=18%  Similarity=0.181  Sum_probs=147.8

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccc--------c---ccccccCC
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLN--------E---QVHQSASG  110 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~--------~---~~~~~~~~  110 (294)
                      ....++++|+|+|+|||+||||+|.|||..|+   .|+||++||+|++++....+++...        .   ........
T Consensus        22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   98 (267)
T 3k9g_A           22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVD   98 (267)
T ss_dssp             ----CCEEEEECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSC
T ss_pred             CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCC
Confidence            33456899999999999999999999999999   4899999999998744433322111        0   11111222


Q ss_pred             CCcce--eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347        111 WSPVF--LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI  188 (294)
Q Consensus       111 ~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad  188 (294)
                      +.+..  ..++++++|.+..........   .......+..+++.+.  +.||+||||+||+.+......+     ..+|
T Consensus        99 ~~~~i~~~~~~l~~lp~~~~~~~~~~~~---~~~~~~~l~~~l~~l~--~~yD~viiD~pp~~~~~~~~~l-----~~aD  168 (267)
T 3k9g_A           99 IDSTIINVDNNLDLIPSYLTLHNFSEDK---IEHKDFLLKTSLGTLY--YKYDYIVIDTNPSLDVTLKNAL-----LCSD  168 (267)
T ss_dssp             GGGGCEEEETTEEEECCCGGGGGTTTCC---CTTGGGHHHHHHHTTC--TTCSEEEEEECSSCSHHHHHHH-----TTCS
T ss_pred             HHHhhccCCCCEEEEeCChHHHHHHHhh---hhhHHHHHHHHHHHhh--cCCCEEEEECcCCccHHHHHHH-----HHCC
Confidence            22222  248999999987665444322   1223457888999887  4499999999999976544333     5799


Q ss_pred             EEEEecCCchhhHHHHHHHHHHHHhcCCC-eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        189 GAIVVTTPQEVSLLDVRKEIDFCRKVNIP-IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       189 ~vliv~~~~~~s~~~~~~~l~~l~~~~~~-~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      .+|+|+.++..++..+.++++.++..+.+ .+++|+||+..        ....   .+..+.+ +. +.++++.||+++.
T Consensus       169 ~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~--------~~~~---~~~~~~l-~~-~~~~~~~Ip~~~~  235 (267)
T 3k9g_A          169 YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK--------NRTH---KTLFEIL-KT-KDRFLGTISERED  235 (267)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT--------TCSC---CHHHHHH-TT-STTEEEEEEC---
T ss_pred             eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC--------cchH---HHHHHHH-hc-CcccceecCcHHH
Confidence            99999999999999999999999988643 36799999841        1111   2233333 33 7899999999999


Q ss_pred             hhhhccCCcccccCCCHHHHHHHHhh
Q psy11347        268 VTRHCDEGTSAIDTPSACVDAIQQIV  293 (294)
Q Consensus       268 ~~~a~~~g~~v~~~~s~~~~~~~~la  293 (294)
                      +.++...|.++.. .+++.++|++++
T Consensus       236 ~~~a~~~g~~~~~-~~~~~~~~~~i~  260 (267)
T 3k9g_A          236 LNRRIAENNNFDL-NKDYIKEYENIL  260 (267)
T ss_dssp             --------------CCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcch-hHHHHHHHHHHH
Confidence            9999999987655 577888888876

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.95  E-value=1.2e-29  Score=222.04  Aligned_cols=221  Identities=16%  Similarity=0.114  Sum_probs=155.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCe-EEEe
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL-SVMS  124 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l-~~~~  124 (294)
                      |+++|+|+|+|||+||||+|.|||..|+  ..|+||++||+|+.++++..+++.........     ......++ +++|
T Consensus         3 M~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~-----~~~~~~~l~~vl~   75 (286)
T 2xj4_A            3 ETRVIVVGNEKGGAGKSTIAVHLVTALL--YGGAKVAVIDLDLRQRTSARFFENRRAWLDNK-----KIELPEPLALNLS   75 (286)
T ss_dssp             -CEEEEECCSSSCTTHHHHHHHHHHHHH--HTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH-----TCCCCCCEEECSS
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCCCCHHHHhCCChhHhHhc-----cccCCCchheEee
Confidence            6789999999999999999999999999  88999999999996678888887654311110     01123456 6666


Q ss_pred             ccc-ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHH
Q psy11347        125 IGF-LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       125 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~  203 (294)
                      .+. ......+      ......+.++++.++  ++|||||||+||+........+     ..+|.+|+|+.++..++..
T Consensus        76 ~~~~~~~~~~~------~~~~~~l~~~l~~l~--~~yD~viiD~p~~~~~~~~~~l-----~~aD~viiv~~~~~~~~~~  142 (286)
T 2xj4_A           76 DNDVALAERPE------EEQVAGFEAAFARAM--AECDFILIDTPGGDSAITRMAH-----GRADLVVTPMNDSFVDFDM  142 (286)
T ss_dssp             SCHHHHTTSCH------HHHHHHHHHHHHHHH--HHCSEEEEECCSSCCHHHHHHH-----HTCSEEEEEEESSHHHHTT
T ss_pred             CCCCCCcChhh------hhhHHHHHHHHHHHH--hcCCEEEEcCCCCccHHHHHHH-----HHCCEEEEEEcCCccHHHH
Confidence            521 1111111      112346778888876  3399999999999975544443     5799999999999999887


Q ss_pred             HHHHHHH-------------H---Hh-------cC-CCeeEEEeccccccCCCCCCCC-ccCCCCchhHHHHHhhcCCce
Q psy11347        204 VRKEIDF-------------C---RK-------VN-IPIIGVVENMATFVCPKCTKPS-EIFPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       204 ~~~~l~~-------------l---~~-------~~-~~~~~vvvN~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~g~~~  258 (294)
                      +.++++.             +   ++       .+ .+ +++|+||++.       .. ...+...+.+++..+.+|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~  214 (286)
T 2xj4_A          143 LGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLAT-------TEARNRKRLEDRLNALAKRVGFRI  214 (286)
T ss_dssp             TEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTT-------CCGGGHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecC-------CCcchhHHHHHHHHHHHHHcCCcc
Confidence            6655444             4   31       13 33 6799999873       22 112111222233333378877


Q ss_pred             eeccCCCchhhhhccCCccccc--C----------CCHHHHHHHHhhC
Q psy11347        259 LGSVPIDPLVTRHCDEGTSAID--T----------PSACVDAIQQIVQ  294 (294)
Q Consensus       259 l~~Ip~~~~~~~a~~~g~~v~~--~----------~s~~~~~~~~la~  294 (294)
                      .+.||++..+.++...|+|+++  |          +++++++|++|++
T Consensus       215 ~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~  262 (286)
T 2xj4_A          215 GPGLRDRVIYRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMH  262 (286)
T ss_dssp             EECCCCCHHHHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHH
Confidence            7899999999999999999998  7          8999999999873

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.95  E-value=1.1e-28  Score=216.96  Aligned_cols=239  Identities=16%  Similarity=0.241  Sum_probs=169.9

Q ss_pred             hHHHHhhhccCceEEEEEe--cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh---hhhcccccc--cc---c
Q psy11347         36 IELVKSHLSNVKHKVLVLS--GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM---PRMMGLLNE--QV---H  105 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s--~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l---~~~lg~~~~--~~---~  105 (294)
                      ...+++.+..+.++|+|++  +|||+||||+|.|||..|+  ..|+||++||+|++++..   ...++....  .+   .
T Consensus        23 ~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la--~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l  100 (298)
T 2oze_A           23 LEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTD--KLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGL  100 (298)
T ss_dssp             HHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHH
T ss_pred             HHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHH
Confidence            4556666667788999999  8999999999999999999  899999999999986432   122343321  01   1


Q ss_pred             cccCCCCc--ceeccCeEEEecccccCCCCccee-ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        106 QSASGWSP--VFLEENLSVMSIGFLLNSPDDAVI-WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       106 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      ... .+.+  ....++++++|++..+........ +........++.+++.+.  ++||+||||+||+.+......+   
T Consensus       101 ~~~-~~~~~~~~~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~--~~yD~IiiD~pp~~~~~~~~~l---  174 (298)
T 2oze_A          101 KNG-NLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK--SDYDLIIIDTVPTPSVYTNNAI---  174 (298)
T ss_dssp             HHT-CCGGGCEESSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG--GGCSEEEEEECSSCSHHHHHHH---
T ss_pred             hcC-ChhhhhcccCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh--cCCCEEEEECCCCccHHHHHHH---
Confidence            111 1111  112478999998765432111000 000012245888888887  3499999999999986444333   


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHHHh------cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK------VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV  256 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~------~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~  256 (294)
                        ..+|.+|+|+.++..++..+.++++.+++      .+++..++|+||++.       +...   ..+..+++.+.++.
T Consensus       175 --~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~-------~~~~---~~~~~~~~~~~~~~  242 (298)
T 2oze_A          175 --VASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT-------DSAT---IKSNLEELYKQHKE  242 (298)
T ss_dssp             --HHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT-------TCHH---HHHHHHHHHHHTTT
T ss_pred             --HHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC-------CcHH---HHHHHHHHHHHhcc
Confidence              35899999999999999999999988875      367789999999873       1111   13456677777775


Q ss_pred             --cee-eccCCCchhhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347        257 --PFL-GSVPIDPLVTRHCDEGTSAID-TPSACVDAIQQIVQ  294 (294)
Q Consensus       257 --~~l-~~Ip~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la~  294 (294)
                        +++ +.||++..+.++...|+|+++ .+++++++|++|++
T Consensus       243 ~~~v~~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~~la~  284 (298)
T 2oze_A          243 DNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFF  284 (298)
T ss_dssp             TCCBCSSCEECCHHHHHHHHHCCCSSSTTHHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHcCCChhhhcChHHHHHHHHHHH
Confidence              555 689999999999999999997 66678899998863

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.95  E-value=3e-27  Score=197.48  Aligned_cols=185  Identities=16%  Similarity=0.135  Sum_probs=143.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ++|+|+|+|||+||||+|.|||..|+  ..| ||+++|+|+++ ++..+++. . +       ++       .++++.. 
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la--~~g-~VlliD~D~q~-~~~~~~~~-~-~-------l~-------~~vi~~~-   59 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLA--LQG-ETLLIDGDPNR-SATGWGKR-G-S-------LP-------FKVVDER-   59 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHH--TTS-CEEEEEECTTC-HHHHHHHH-S-C-------CS-------SEEEEGG-
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHH--hcC-CEEEEECCCCC-CHHHHhcC-C-C-------CC-------cceeCHH-
Confidence            47999999999999999999999999  889 99999999985 55555544 1 0       00       1333310 


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCC-CChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPG-TSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK  206 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~-~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~  206 (294)
                                            .++.+.  +.||+||||+||+ ........+     ..+|.+|+|+.++..++..+.+
T Consensus        60 ----------------------~l~~l~--~~yD~viiD~p~~~~~~~~~~~l-----~~aD~viiv~~~~~~~~~~~~~  110 (209)
T 3cwq_A           60 ----------------------QAAKYA--PKYQNIVIDTQARPEDEDLEALA-----DGCDLLVIPSTPDALALDALML  110 (209)
T ss_dssp             ----------------------GHHHHG--GGCSEEEEEEECCCSSSHHHHHH-----HTSSEEEEEECSSHHHHHHHHH
T ss_pred             ----------------------HHHHhh--hcCCEEEEeCCCCcCcHHHHHHH-----HHCCEEEEEecCCchhHHHHHH
Confidence                                  334444  3399999999999 665444433     4799999999999999999999


Q ss_pred             HHHHHHhc-CCCeeEEEeccccccCCCCCCCC-ccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccccc---
Q psy11347        207 EIDFCRKV-NIPIIGVVENMATFVCPKCTKPS-EIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID---  280 (294)
Q Consensus       207 ~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~---  280 (294)
                      +++.+++. +.+ .++|+|+++.+       . ..    ...+.+.++.+|.+++ +.||+++.+.++...|+|+++   
T Consensus       111 ~~~~l~~~~~~~-~~vv~N~~~~~-------~~~~----~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~  178 (209)
T 3cwq_A          111 TIETLQKLGNNR-FRILLTIIPPY-------PSKD----GDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSD  178 (209)
T ss_dssp             HHHHHHHTCSSS-EEEEECSBCCT-------TSCH----HHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSS
T ss_pred             HHHHHHhccCCC-EEEEEEecCCc-------cchH----HHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCC
Confidence            99999885 455 88999999731       1 11    2234455556899988 799999999999999999987   


Q ss_pred             CCC-HHHHHHHHhhC
Q psy11347        281 TPS-ACVDAIQQIVQ  294 (294)
Q Consensus       281 ~~s-~~~~~~~~la~  294 (294)
                      |++ +++++|++|++
T Consensus       179 p~~~~~~~~~~~l~~  193 (209)
T 3cwq_A          179 SKAGIAWSDYKATGK  193 (209)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHH
Confidence            678 99999999873

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.95  E-value=5.3e-27  Score=211.63  Aligned_cols=238  Identities=14%  Similarity=0.122  Sum_probs=140.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccc--------------------c---c
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLN--------------------E---Q  103 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~--------------------~---~  103 (294)
                      |++|+|+|+||||||||+|.|||..|+  ..|+||++||+|++++....+++...                    .   .
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d   78 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFA--LQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYA   78 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHH--HTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGG
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHH--hCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHH
Confidence            689999999999999999999999999  89999999999999876666655321                    1   1


Q ss_pred             ccc----ccCCCCc---cee--ccCeEEEecccccCCCCcceeec------C----ccchHHHHHHHHhhccCCCccEEE
Q psy11347        104 VHQ----SASGWSP---VFL--EENLSVMSIGFLLNSPDDAVIWR------G----PKKNTMIRQFLSEVDWGNGLEYLL  164 (294)
Q Consensus       104 ~~~----~~~~~~~---~~~--~~~l~~~~~~~~~~~~~~~~~~~------~----~~~~~~l~~~l~~l~~~~~yd~Ii  164 (294)
                      +..    ....+.+   ...  .++++++|++..+......+...      .    ......++++++.++....|||||
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VI  158 (361)
T 3pg5_A           79 IFVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIF  158 (361)
T ss_dssp             GGHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEE
Confidence            111    1122222   121  35999999987665544322110      0    011135788888886312499999


Q ss_pred             EcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhc--------------------C---------
Q psy11347        165 IDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV--------------------N---------  215 (294)
Q Consensus       165 iD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~--------------------~---------  215 (294)
                      ||+||+++......+     ..+|.+|+|+.++..++..+.++++.+++.                    +         
T Consensus       159 ID~pP~l~~~~~~aL-----~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (361)
T 3pg5_A          159 FDVGPSLGPFNRTVL-----LGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLR  233 (361)
T ss_dssp             EECCSCCSHHHHHHH-----TTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSC
T ss_pred             EECCCCcCHHHHHHH-----HHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccc
Confidence            999999985444433     679999999999999999999888888644                    1         


Q ss_pred             --------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhc-----------CCceeeccCCCchh-hhhccCC
Q psy11347        216 --------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAEL-----------SVPFLGSVPIDPLV-TRHCDEG  275 (294)
Q Consensus       216 --------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------g~~~l~~Ip~~~~~-~~a~~~g  275 (294)
                              .+++|+|+|+++.+....  ...+.+.+....+++.+..           .-..++.||....+ ..|...|
T Consensus       234 ~~g~~~~~l~~lG~v~n~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~  311 (361)
T 3pg5_A          234 LGGFDGEGLRYLGYTTLEYVKRRANG--QEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVH  311 (361)
T ss_dssp             TTSSSSSCCEEEEEEECC-------------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-------------
T ss_pred             cccccccccceeeEEEEcchhhcCCC--chhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHC
Confidence                    678999999998642111  0001111222223333333           33446788876555 8899999


Q ss_pred             ccccc--C-----------CCHHHHHHHHhh
Q psy11347        276 TSAID--T-----------PSACVDAIQQIV  293 (294)
Q Consensus       276 ~~v~~--~-----------~s~~~~~~~~la  293 (294)
                      .|+++  +           ...+.+.|.+||
T Consensus       312 ~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la  342 (361)
T 3pg5_A          312 APIMELSSSDRVRGAQINQRNAYAEKINSVA  342 (361)
T ss_dssp             ---------------------CCHHHHHHHH
T ss_pred             CCeEECchhcCCccHHHHHHHHHHHHHHHHH
Confidence            99999  4           346777777765

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.93  E-value=1.5e-26  Score=211.39  Aligned_cols=232  Identities=13%  Similarity=0.067  Sum_probs=154.0

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhc----CCCCcEEEEecCCCCCChhhhccccccc----------cccc---
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKS----NESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQS---  107 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~----~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~~---  107 (294)
                      .++++|+|+|+|||+||||+|.|||..|+..    ..|+||++||+|+++ +++.+||.....          +...   
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~  184 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVSR  184 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhccc
Confidence            4689999999999999999999999999911    259999999999964 788888875421          0000   


Q ss_pred             cCCCCcc---eeccCeEEEecccccCCCCcc----e--e-ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH
Q psy11347        108 ASGWSPV---FLEENLSVMSIGFLLNSPDDA----V--I-WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS  177 (294)
Q Consensus       108 ~~~~~~~---~~~~~l~~~~~~~~~~~~~~~----~--~-~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~  177 (294)
                      ...+.+.   ...++++++|++..+......    .  . .........++++++.+.  ++|||||||+||+++.....
T Consensus       185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~--~~yD~ViiD~pp~~~~~~~~  262 (398)
T 3ez2_A          185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK--SDYDFILVDSGPHLDAFLKN  262 (398)
T ss_dssp             HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT--TTCSEEEEEECSCCSHHHHH
T ss_pred             cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh--ccCCEEEEeCCCCccHHHHH
Confidence            0001111   123799999987543110000    0  0 001112235567788876  44999999999999876555


Q ss_pred             HHHHhhcCCCcEEEEecCCchhhHHHHHH-------HHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHH
Q psy11347        178 LVQYLKGLPDIGAIVVTTPQEVSLLDVRK-------EIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAE  248 (294)
Q Consensus       178 ~~~~l~~~~ad~vliv~~~~~~s~~~~~~-------~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~  248 (294)
                      .+     ..+|.+|+|+.++..++..+.+       +++.+++.+  .+..++|.|+....     . ...   .....+
T Consensus       263 ~l-----~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~-----~-~~~---~~~~~~  328 (398)
T 3ez2_A          263 AL-----ASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLS-----N-KAD---HKYCHS  328 (398)
T ss_dssp             HH-----HHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEEC-----S-CHH---HHHHHH
T ss_pred             HH-----HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCC-----C-chh---HHHHHH
Confidence            44     4689999999998886654443       444444443  44556666554421     1 100   123456


Q ss_pred             HHHhhcCCcee-eccCCCchhhhhccCCccccc--CCC---------HHHHHHHHhh
Q psy11347        249 KMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPS---------ACVDAIQQIV  293 (294)
Q Consensus       249 ~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s---------~~~~~~~~la  293 (294)
                      ++.+.+|.+++ +.||+++.+.++...|+|+++  |++         .+.+.+.+|+
T Consensus       329 ~l~~~~g~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~  385 (398)
T 3ez2_A          329 LAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFA  385 (398)
T ss_dssp             HHHHHHGGGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHH
Confidence            67777898888 799999999999999999998  542         4555666554

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.93  E-value=3e-26  Score=209.82  Aligned_cols=231  Identities=15%  Similarity=0.112  Sum_probs=120.5

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhc----CCCCcEEEEecCCCCCChhhhccccccc----------ccccc-
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKS----NESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQSA-  108 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~----~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~~~-  108 (294)
                      ..++++|+|+|+|||+||||+|.|||..|+..    ..|+||++||+|+++ +++.+||.....          +.... 
T Consensus       108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~  186 (403)
T 3ez9_A          108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD  186 (403)
T ss_dssp             SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred             CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence            34689999999999999999999999999810    258999999999976 788888876531          00000 


Q ss_pred             --CCCCcc---eeccCeEEEecccccCCCCcc----e--ee-cCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH
Q psy11347        109 --SGWSPV---FLEENLSVMSIGFLLNSPDDA----V--IW-RGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL  176 (294)
Q Consensus       109 --~~~~~~---~~~~~l~~~~~~~~~~~~~~~----~--~~-~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~  176 (294)
                        ..+...   ...++++++|++.........    .  .. ........++.+++.+.  ++|||||||+||+++....
T Consensus       187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~yD~VIID~pP~~~~~~~  264 (403)
T 3ez9_A          187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA--DDYDFIFIDTGPHLDPFLL  264 (403)
T ss_dssp             HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG--GGCSEEEEEECSSCSHHHH
T ss_pred             ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh--hcCCEEEEECCCCccHHHH
Confidence              001111   123889999987542110000    0  00 01111224456777776  3499999999999986555


Q ss_pred             HHHHHhhcCCCcEEEEecCCchhhHHHHH-------HHHHHHHhcC--CCeeEE--EeccccccCCCCCCCCccCCCCch
Q psy11347        177 SLVQYLKGLPDIGAIVVTTPQEVSLLDVR-------KEIDFCRKVN--IPIIGV--VENMATFVCPKCTKPSEIFPKDSG  245 (294)
Q Consensus       177 ~~~~~l~~~~ad~vliv~~~~~~s~~~~~-------~~l~~l~~~~--~~~~~v--vvN~~~~~~~~~~~~~~i~~~~~~  245 (294)
                      ..+     ..+|.+|+|+.++..++..+.       ++++.+++.+  .++.++  ++|+++.       . ..   ...
T Consensus       265 ~al-----~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~-------~-~~---~~~  328 (403)
T 3ez9_A          265 NGL-----AASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG-------K-RD---HET  328 (403)
T ss_dssp             HHH-----HHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----------C-HH---HHH
T ss_pred             HHH-----HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-------c-hh---HHH
Confidence            444     468999999999887665544       3444445444  444444  4555431       0 00   122


Q ss_pred             hHHHHHhhcCCcee-eccCCCchhhhhccCCccccc--CC---------CHHHHHHHHhh
Q psy11347        246 GAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TP---------SACVDAIQQIV  293 (294)
Q Consensus       246 ~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~---------s~~~~~~~~la  293 (294)
                      ..+.+.+.+|.+++ +.||+++.+.++...|+|+++  |+         ..+.+.+++|+
T Consensus       329 ~~~~~~~~~g~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la  388 (403)
T 3ez9_A          329 SHSLAREVYASNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFT  388 (403)
T ss_dssp             HHHHHHHHHTTSEECCC-----------------------------CTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHH
Confidence            34556667899999 899999999999999999998  54         34556666654

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.93  E-value=3.4e-25  Score=193.35  Aligned_cols=180  Identities=16%  Similarity=0.221  Sum_probs=140.6

Q ss_pred             ChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347         35 GIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH  105 (294)
Q Consensus        35 ~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~  105 (294)
                      ..+.||..+.     ..+++|+|+|+|||+||||+|.|||..|+  ..|+||++||+|++.++++.+|+.....    +.
T Consensus        75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l  152 (286)
T 3la6_A           75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEIL  152 (286)
T ss_dssp             HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHH
T ss_pred             HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHc
Confidence            3455554443     34689999999999999999999999999  8999999999999999999999987652    22


Q ss_pred             cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      .....+.+...   .++++++|.+....++.+.+      ....+.++++.++  +.||+||||+||.........+   
T Consensus       153 ~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~da~~l---  221 (286)
T 3la6_A          153 IGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELL------MSERFAELVNWAS--KNYDLVLIDTPPILAVTDAAIV---  221 (286)
T ss_dssp             HTSSCTTTTCEECSSTTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCTHHHHH---
T ss_pred             cCCCCHHHheeccCCCCEEEEeCCCCCCCHHHHh------chHHHHHHHHHHH--hCCCEEEEcCCCCcchHHHHHH---
Confidence            22334444332   37899999987655443322      2347888888887  3399999999998754222222   


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                       ...+|.+|+|+.++..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus       222 -~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~  266 (286)
T 3la6_A          222 -GRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR  266 (286)
T ss_dssp             -TTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred             -HHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence             157999999999999999999999999999999999999999974

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.91  E-value=1.2e-24  Score=188.71  Aligned_cols=180  Identities=19%  Similarity=0.277  Sum_probs=136.5

Q ss_pred             ChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347         35 GIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH  105 (294)
Q Consensus        35 ~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~  105 (294)
                      ..+.||..+.     ..+++|+|+|.|||+||||+|.|||..|+  ..|+||++||+|++.++++.+|+.....    +.
T Consensus        65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA--~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L  142 (271)
T 3bfv_A           65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYA--QAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLL  142 (271)
T ss_dssp             HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHh
Confidence            3445555443     35789999999999999999999999999  8999999999999999999999876542    11


Q ss_pred             cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347        106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL  182 (294)
Q Consensus       106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l  182 (294)
                      .....+.+...   .++++++|++....++.+.+      ....+.++++.++  +.||+||||+||.........+.  
T Consensus       143 ~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~d~~~l~--  212 (271)
T 3bfv_A          143 LNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELI------TSRAFANLYDTLL--MNYNFVIIDTPPVNTVTDAQLFS--  212 (271)
T ss_dssp             TTSSCHHHHEEECSSTTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCSHHHHHH--
T ss_pred             CCCCCHHHcEEeCCCCCEEEEECCCCCCCHHHHh------ChHHHHHHHHHHH--hCCCEEEEeCCCCchHHHHHHHH--
Confidence            11222222222   27999999886654433221      1246788888887  33999999999976532222221  


Q ss_pred             hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                        ..+|.+|+|+.++..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus       213 --~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~  256 (271)
T 3bfv_A          213 --KFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK  256 (271)
T ss_dssp             --HHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred             --HHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence              35899999999999999999999999999999999999999973

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.91  E-value=7.8e-25  Score=198.33  Aligned_cols=197  Identities=19%  Similarity=0.180  Sum_probs=137.4

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc----ccc--------CCCC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH----QSA--------SGWS  112 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~----~~~--------~~~~  112 (294)
                      ..+++|+|+|+|||+||||+|.|||..|+  ..|+||+++|+| ..++++.+||.++....    ...        ..+.
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La--~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~  217 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA--NMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE  217 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHH--HHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence            35899999999999999999999999999  789999999999 67799999998766211    110        0122


Q ss_pred             cce--eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEE
Q psy11347        113 PVF--LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGA  190 (294)
Q Consensus       113 ~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~v  190 (294)
                      +..  ...+++++|.+........       .....+..+++.+.....||+||||+|++.+......+     ..+|.+
T Consensus       218 ~~i~~~~~~l~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l-----~~aD~v  285 (373)
T 3fkq_A          218 SCIKQSQEGVSYFSSTKVALDILE-------ISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLL-----SKAWRI  285 (373)
T ss_dssp             HTCEECTTSCEECCCCSSGGGGGG-------CCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHH-----TTCSEE
T ss_pred             HHhhcCCCCEEEecCCCChHhHHh-------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHH-----HHCCEE
Confidence            221  2378999987754332221       13345666666665223499999999999987665555     689999


Q ss_pred             EEecCCchhh---HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        191 IVVTTPQEVS---LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       191 liv~~~~~~s---~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      ++|++++..+   +..+.+.++.+... . .+++|.|++..           .++.....+++++..++++++.||+|+.
T Consensus       286 ivv~~~~~~s~~~l~~~~~~l~~l~~~-~-~~~vv~N~~~v-----------~~~~~~~~~~fl~~~~l~~lG~IP~D~~  352 (373)
T 3fkq_A          286 IVVNDGSQLSNYKFMRAYESVVLLEQN-D-DINIIRNMNMI-----------YNKFSNKNSEMLSNISIKTIGGAPRYEH  352 (373)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHHHTTS-T-TCCCGGGEEEE-----------ECSCCTTTCCCCCSCSCEEEEECCCCTT
T ss_pred             EEEecCCchHHHHHHHHHHHHHHhccc-C-CcEEEehhHHH-----------HHHHHHHHHHHhhcCCccceeecCCCCC
Confidence            9999999988   45555555555442 2 25666666532           2222233445555679999999999987


Q ss_pred             hh
Q psy11347        268 VT  269 (294)
Q Consensus       268 ~~  269 (294)
                      ..
T Consensus       353 ~~  354 (373)
T 3fkq_A          353 AT  354 (373)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.90  E-value=3.4e-24  Score=188.37  Aligned_cols=170  Identities=17%  Similarity=0.231  Sum_probs=132.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCccee---c
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFL---E  117 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~---~  117 (294)
                      ..+++|+|+|.|||+||||+|.|||..|+  ..|+||++||+|++.++++.+|+.....    +......+++...   .
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~  179 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIA--QSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK  179 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHH--HTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETT
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHH--hCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCC
Confidence            34789999999999999999999999999  8899999999999989999999877642    1112222332222   2


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      ++++++|++....++.+.+      ....+.++++.++  +.||+||||+||.+.......+    ...+|.+|+|+.++
T Consensus       180 ~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~d~~~l----~~~ad~vilV~~~~  247 (299)
T 3cio_A          180 GGFDVITRGQVPPNPSELL------MRDRMRQLLEWAN--DHYDLVIVDTPPMLAVSDAAVV----GRSVGTSLLVARFG  247 (299)
T ss_dssp             TTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCTHHHHH----GGGCSEEEEEEETT
T ss_pred             CCEEEEECCCCCCCHHHHh------CHHHHHHHHHHHH--hCCCEEEEcCCCCchhHHHHHH----HHHCCEEEEEEcCC
Confidence            7999999886654433221      1346788888887  3399999999998753211122    14699999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus       248 ~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~  278 (299)
T 3cio_A          248 LNTAKEVSLSMQRLEQAGVNIKGAILNGVIK  278 (299)
T ss_dssp             TSCTTHHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred             CChHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence            9999999999999999999999999999974

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.90  E-value=1.8e-23  Score=185.91  Aligned_cols=213  Identities=19%  Similarity=0.253  Sum_probs=131.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc-CCC-----Ccc------
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA-SGW-----SPV------  114 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~-~~~-----~~~------  114 (294)
                      |++|+|+++|||+||||+|+|||..++  ..|+||+++|+|+ .++++.+|+.+........ ..+     +..      
T Consensus        13 m~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~   89 (324)
T 3zq6_A           13 KTTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEY   89 (324)
T ss_dssp             BCEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHH
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHH
Confidence            589999999999999999999999999  8899999999999 6799999987643211110 000     000      


Q ss_pred             ---eeccCeEEEecccccCCCC--cceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-H------------
Q psy11347        115 ---FLEENLSVMSIGFLLNSPD--DAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-L------------  176 (294)
Q Consensus       115 ---~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~------------  176 (294)
                         .......+++.+.......  .....+.......+..+.+.+...+ ||+||||+||....-. +            
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~-yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~  168 (324)
T 3zq6_A           90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDE-YDIVIFDTAPTGHTLRLLSFPEIMDSWVGK  168 (324)
T ss_dssp             HHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCC-CSEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHhHHHHHHHHHH
Confidence               0000001222221100000  0000111111223334444433334 9999999998431100 0            


Q ss_pred             -------------------------------------------HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHh
Q psy11347        177 -------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK  213 (294)
Q Consensus       177 -------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~  213 (294)
                                                                 .....+.....+.+++|+.++..++..+.+.++.+++
T Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~  248 (324)
T 3zq6_A          169 MIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEK  248 (324)
T ss_dssp             HHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHH
Confidence                                                       0111222223468999999999999999999999999


Q ss_pred             cCCCeeEEEecccccc---CCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347        214 VNIPIIGVVENMATFV---CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP  266 (294)
Q Consensus       214 ~~~~~~~vvvN~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~  266 (294)
                      .+++..|+|+|++.+.   |+.|..+..++   ....+++.+.++...+..||..+
T Consensus       249 ~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~~~~~~~~iPl~~  301 (324)
T 3zq6_A          249 YSIHADGVIVNQVLPEESDCEFCNARRKLQ---QERLKQIREKFSDKVVAEVPLLK  301 (324)
T ss_dssp             TTCCEEEEEEEEECCSCCCSHHHHHHHHHH---HHHHHHHHHHTTTSEEEEEECCS
T ss_pred             CCCCccEEEEcCCccccCCChHHHHHHHHH---HHHHHHHHHHcCCCcEEEecCCC
Confidence            9999999999999865   33333333333   34567777788888888888754

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=99.89  E-value=5.9e-23  Score=184.22  Aligned_cols=211  Identities=22%  Similarity=0.329  Sum_probs=137.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEe
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMS  124 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (294)
                      ..+++|+|+++|||+||||+|+|||..++  ..|+||+++|+|+ .++++.+|+.+....+....+.      ++++...
T Consensus        23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~g~------~~l~~~~   93 (349)
T 3ug7_A           23 KDGTKYIMFGGKGGVGKTTMSAATGVYLA--EKGLKVVIVSTDP-AHSLRDIFEQEFGHEPTKVKGY------DNLYVVE   93 (349)
T ss_dssp             SCSCEEEEEECSSSTTHHHHHHHHHHHHH--HSSCCEEEEECCT-TCHHHHHHCSCCCSSCEECTTC------SSEEEEE
T ss_pred             cCCCEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCC-CCCHHHHhCCCCCcCccccccc------cceeeec
Confidence            45899999999999999999999999999  8899999999999 5699999988654222111111      1121111


Q ss_pred             cccc-------------c-------CCCCcce----eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------
Q psy11347        125 IGFL-------------L-------NSPDDAV----IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD-------  173 (294)
Q Consensus       125 ~~~~-------------~-------~~~~~~~----~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~-------  173 (294)
                      ....             .       ......+    ..........+..+.+.+. .++||+||||+||....       
T Consensus        94 id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~-~~~yD~VIiDtpPt~~tlrlL~~p  172 (349)
T 3ug7_A           94 IDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMD-SNEFDVVIFDTAPTGHTLRFLGMP  172 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH-CCSCSEEEECSCCCTTGGGGGGHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHhhH
Confidence            0000             0       0000000    0001111112333444333 23499999999995421       


Q ss_pred             HHH---------------------------------------------------HHHHHhhcCCCcEEEEecCCchhhHH
Q psy11347        174 EHL---------------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       174 ~~~---------------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~  202 (294)
                      ..+                                                   .....+.....+.+++|+.++..++.
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~  252 (349)
T 3ug7_A          173 EVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSIL  252 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHH
Confidence            000                                                   00112222335889999999999999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEecccccc---CCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFV---CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV  268 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~  268 (294)
                      .+.+.++.+++.+++..|+|+|++.+.   |+.|..+..++   ....+++.+.++.+.++.||.++.-
T Consensus       253 e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~~~~~l~~iPl~~~e  318 (349)
T 3ug7_A          253 ESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ---LKRLEMIKEKFGDKVIAYVPLLRTE  318 (349)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH---HHHHHHHHHHSTTSEEEEEECCSSC
T ss_pred             HHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH---HHHHHHHHHHcCCCcEEEecCCCCC
Confidence            999999999999999999999998865   33333333333   4567788888999999999987543

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=99.87  E-value=2e-22  Score=180.93  Aligned_cols=182  Identities=17%  Similarity=0.231  Sum_probs=116.8

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcc-------
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPV-------  114 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~-------  114 (294)
                      .+.+..++|+|+|+||||||||+|+|||..|++...|+||++||+|+. ++++.+||.+....+....++..+       
T Consensus        12 l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~   90 (354)
T 2woj_A           12 LITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDP   90 (354)
T ss_dssp             HHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCH
T ss_pred             HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCH
Confidence            334557899999999999999999999999992147999999999995 899999998753211111100000       


Q ss_pred             -----------ee--c--------cCeEEEecccccCCCCcc-eeecCccchHHHHHHHHhhccC-----CCccEEEEcC
Q psy11347        115 -----------FL--E--------ENLSVMSIGFLLNSPDDA-VIWRGPKKNTMIRQFLSEVDWG-----NGLEYLLIDT  167 (294)
Q Consensus       115 -----------~~--~--------~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~-----~~yd~IiiD~  167 (294)
                                 ..  .        .+++.++.+...   .+. ...++......+.++++.+...     ..||+||||+
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~---~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDt  167 (354)
T 2woj_A           91 SAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGAL---ADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDT  167 (354)
T ss_dssp             HHHHHHHHTC--------------------CCSSHH---HHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEEC
T ss_pred             HHHHHHHHHHHHhhcccccccchhhhhhhccchhHH---HHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECC
Confidence                       00  0        034444321100   000 0011112224677777776632     1499999999


Q ss_pred             CC-CCC---------------------hHHH--------------------------HHHHHhhcCCCcEEEEecCCchh
Q psy11347        168 PP-GTS---------------------DEHL--------------------------SLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       168 p~-~~~---------------------~~~~--------------------------~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      || +..                     ....                          .....+....+|.+++|+.++..
T Consensus       168 pPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~  247 (354)
T 2woj_A          168 APTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFL  247 (354)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHH
T ss_pred             CCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc
Confidence            99 320                     0000                          01111211268999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        200 SLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ++..+.++++.++..+++..++|+|++.
T Consensus       248 si~ea~r~~~~L~~~g~~~~gvVvN~v~  275 (354)
T 2woj_A          248 SLYETERLIQELISYDMDVNSIIVNQLL  275 (354)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence            9999999999999999999999999987

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=99.85  E-value=1.1e-21  Score=174.43  Aligned_cols=178  Identities=21%  Similarity=0.202  Sum_probs=113.1

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceecc
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE  118 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~  118 (294)
                      |+..+.+.+++|.|+++|||+||||+|+|||..++  ..|+||+++|+|++ +++..+|+.............      +
T Consensus         7 l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~~------~   77 (334)
T 3iqw_A            7 LQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEGF------D   77 (334)
T ss_dssp             SHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTTC------S
T ss_pred             HHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCC-CChhHHhccccCCCceeecCC------C
Confidence            34455666778889999999999999999999999  89999999999985 588888876543211111000      0


Q ss_pred             CeEEEecc--------------------cccCCCCcce--eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--
Q psy11347        119 NLSVMSIG--------------------FLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--  174 (294)
Q Consensus       119 ~l~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--  174 (294)
                      +++.+...                    ..+ +.....  ...+......+.++.+.+...+ ||+||||+||....-  
T Consensus        78 ~L~~~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~-yD~VIiDtpPtg~tLrl  155 (334)
T 3iqw_A           78 NLYAMEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLS-YETIVFDTAPTGHTLRF  155 (334)
T ss_dssp             SEEEEECCC---------------------------------CCHHHHHHHHHHHHHHHTSS-CSEEEEECCCHHHHHHH
T ss_pred             CceeeecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHH
Confidence            11110000                    000 000000  0112222223444444444334 999999999821100  


Q ss_pred             ------------------------------------------------------HHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        175 ------------------------------------------------------HLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       175 ------------------------------------------------------~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                                                                            .......+.....+.+++|+.++..+
T Consensus       156 L~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~  235 (334)
T 3iqw_A          156 LQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLS  235 (334)
T ss_dssp             HTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccH
Confidence                                                                  00111122223457899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      +..+.+.++.+++.+++..++|+|++.
T Consensus       236 ~~ea~r~~~~L~~~gi~v~gvVvN~~~  262 (334)
T 3iqw_A          236 LYETERMIQELANYGIDTHCIVVNQLL  262 (334)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCccEEEECCCc
Confidence            999999999999999999999999986

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=99.85  E-value=1.6e-21  Score=173.51  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=112.6

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCccee---c---
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFL---E---  117 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~---~---  117 (294)
                      .+..++|+|+|+|||+||||+|+|||..|+  ..|+||+++|+|++ ++++.+|+.+...-.....+...+..   .   
T Consensus        15 ~~~~~~i~v~sgkGGvGKTTva~~LA~~lA--~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~   91 (329)
T 2woo_A           15 EQTSLKWIFVGGKGGVGKTTTSCSLAIQMS--KVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNL   91 (329)
T ss_dssp             HCTTCCEEEEECSSSSSHHHHHHHHHHHHH--TSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred             cCCCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHH
Confidence            345688999999999999999999999999  89999999999998 78999998763211100001111000   0   


Q ss_pred             ------cC-----eE-EEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------HH---
Q psy11347        118 ------EN-----LS-VMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD-------EH---  175 (294)
Q Consensus       118 ------~~-----l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~-------~~---  175 (294)
                            ..     ++ +++....  ..  ............+..+.+.+.+.+ ||+||||+||....       ..   
T Consensus        92 ~~~~~~~~~~~~~l~~~l~~~l~--~l--~~~~pg~~e~~~~~~~~~~l~~~~-yD~ViiDtpPtg~~l~lL~~p~~~~~  166 (329)
T 2woo_A           92 SIQEMTEQADQQNPNNPLSGMMQ--DL--AFTIPGIDEALAFAEILKQIKSME-FDCVIFDTAPTGHTLRFLNFPTVLEK  166 (329)
T ss_dssp             HHHHHHHTC--------CCHHHH--HH--HTTSTTHHHHHHHHHHHHHHHHTC-CSEEEEECCSSSCTTTGGGHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHhhHHHH--HH--hcCCCCHHHHHHHHHHHHHHHhCC-CCEEEECCCCchHHHHHHHHHHHHHH
Confidence                  00     11 1110000  00  000111122224555666555434 99999999993221       00   


Q ss_pred             ---------------HHHH----------------------------HHhhcCCCcEEEEecCCchhhHHHHHHHHHHHH
Q psy11347        176 ---------------LSLV----------------------------QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCR  212 (294)
Q Consensus       176 ---------------~~~~----------------------------~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~  212 (294)
                                     ...+                            ..+.....+.+++|+.++..++..+.+.++.++
T Consensus       167 ~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~  246 (329)
T 2woo_A          167 ALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELT  246 (329)
T ss_dssp             HHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHH
Confidence                           0110                            011111245799999999999999999999999


Q ss_pred             hcCCCeeEEEecccc
Q psy11347        213 KVNIPIIGVVENMAT  227 (294)
Q Consensus       213 ~~~~~~~~vvvN~~~  227 (294)
                      +.+++..++|+|++.
T Consensus       247 ~~gi~v~gvVvN~~~  261 (329)
T 2woo_A          247 SYEIDTHNIVVNQLL  261 (329)
T ss_dssp             HHTCEEEEEEEEEEC
T ss_pred             HCCCCCCEEEEeCCc
Confidence            999999999999987

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=99.82  E-value=1.9e-20  Score=167.24  Aligned_cols=189  Identities=17%  Similarity=0.151  Sum_probs=104.5

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC--------C
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS--------G  110 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~--------~  110 (294)
                      |+..+....+.|+|+++|||+||||+|++||..++....|+||+++|+|+ .++++.+||...........        .
T Consensus         9 L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~-~~~l~~~~~~~~~~~~~~v~~~~~L~~~~   87 (348)
T 3io3_A            9 LESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP-AHNLSDAFCQKFGKDARKVEGLPNLSCME   87 (348)
T ss_dssp             SHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCHHHHHHTSCCCSSCEEETTEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCChHHHhccccCCCceeccCCCCceEEe
Confidence            34445566678889999999999999999999999214799999999997 56888888865331110000        0


Q ss_pred             CCcce-eccCeEEEe-----cccccCCCCcc--eeecCccchHHHHHHHHhhccC-----------CCccEEEEcCCCCC
Q psy11347        111 WSPVF-LEENLSVMS-----IGFLLNSPDDA--VIWRGPKKNTMIRQFLSEVDWG-----------NGLEYLLIDTPPGT  171 (294)
Q Consensus       111 ~~~~~-~~~~l~~~~-----~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~-----------~~yd~IiiD~p~~~  171 (294)
                      ++... ..+....+.     .+..+......  ...++......+.++++.+...           +.||+||||+||..
T Consensus        88 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg  167 (348)
T 3io3_A           88 IDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTG  167 (348)
T ss_dssp             CCC-----------------------------------------------------------------CCEEEEECSSHH
T ss_pred             eCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCch
Confidence            00000 000000000     00000000000  0001111112344555544421           14999999999822


Q ss_pred             Ch-----------HHH-------------------------------------HHHHHhhcCCCcEEEEecCCchhhHHH
Q psy11347        172 SD-----------EHL-------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       172 ~~-----------~~~-------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~~  203 (294)
                      ..           +.+                                     .....+.....+.+++|+.++..++..
T Consensus       168 ~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~e  247 (348)
T 3io3_A          168 HTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYE  247 (348)
T ss_dssp             HHHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHH
Confidence            10           000                                     011222223357899999999999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++.+++.+++..++|+||+.+
T Consensus       248 a~r~~~~L~~~gi~v~gvVvN~~~~  272 (348)
T 3io3_A          248 TERMIQELMSYNMDVNSIVVNQLLF  272 (348)
T ss_dssp             HHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred             HHHHHHHHHHCCCCccEEEEcCCcc
Confidence            9999999999999999999999875

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.82  E-value=1e-19  Score=152.98  Aligned_cols=197  Identities=14%  Similarity=0.147  Sum_probs=121.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh-ccccccc--cccccCCCCcceeccCeEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM-MGLLNEQ--VHQSASGWSPVFLEENLSVM  123 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~-lg~~~~~--~~~~~~~~~~~~~~~~l~~~  123 (294)
                      .++|+|+|.|||+||||+|.|||.+|+  .+|+||+++|  ++..+.... .+.....  ...................+
T Consensus         1 ~k~I~v~s~kgGvGKTt~a~nLa~~la--~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   76 (224)
T 1byi_A            1 SKRYFVTGTDTEVGKTVASCALLQAAK--AAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTF   76 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHH--HTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEe
Confidence            368999999999999999999999999  8999999976  332211100 0000000  00001111100000011122


Q ss_pred             --ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEEecC
Q psy11347        124 --SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vliv~~  195 (294)
                        |....+.   .... ........+.+.++.+.  ++|||||||+||++...      ....+..    ..+.+|+|+.
T Consensus        77 ~~~~~~~~~---~~~~-~~~~~~~~l~~~l~~l~--~~yD~viID~p~~l~~p~~~~~~~~~l~~~----~~~~vi~v~~  146 (224)
T 1byi_A           77 AEPTSPHII---SAQE-GRPIESLVMSAGLRALE--QQADWVLVEGAGGWFTPLSDTFTFADWVTQ----EQLPVILVVG  146 (224)
T ss_dssp             SSCSCHHHH---HHHH-TCCCCHHHHHHHHHHHH--TTCSEEEEECSSSTTCEEETTEEHHHHHHH----HTCCEEEEEE
T ss_pred             CCCCCHHHH---HHHc-CCCCCHHHHHHHHHHHH--HhCCEEEEEcCCccccCCCcchhHHHHHHH----hCCCEEEEec
Confidence              1110000   0000 01123457888888886  34999999999887532      1222211    1234888888


Q ss_pred             CchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        196 PQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      +...++..+...++.++..+.+..|+|+|+++.       +...   ..+..+.+.+.++.++++.||+++.
T Consensus       147 ~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~-------~~~~---~~~~~~~l~~~~~~~vl~~Ip~~~~  208 (224)
T 1byi_A          147 VKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP-------PGKR---HAEYMTTLTRMIPAPLLGEIPWLAE  208 (224)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSS-------CCTT---HHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred             CCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC-------chhh---HHHHHHHHHHHcCCCEEEECCCCcC
Confidence            889999999999999998899999999999873       1111   2345566777789999999999974

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.76  E-value=1.8e-19  Score=172.47  Aligned_cols=186  Identities=18%  Similarity=0.253  Sum_probs=112.3

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCC
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWS  112 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~  112 (294)
                      .+..+.+...+..+.+++.|+++|||+||||+|.|||..++  ..|++|+++|+|++ +++...|+.........  .++
T Consensus       312 ~~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~--~~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~--~~~  386 (589)
T 1ihu_A          312 IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA--DMGFDVHLTTSDPA-AHLSMTLNGSLNNLQVS--RID  386 (589)
T ss_dssp             CCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESCCC------------CCEEEE--ECC
T ss_pred             cchhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHH--HCCCcEEEEeCCCc-ccHhHHhcccCCCceee--ecc
Confidence            35666667777778899999999999999999999999999  89999999999997 56777776632211000  000


Q ss_pred             c----------ceec--cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------
Q psy11347        113 P----------VFLE--ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------  174 (294)
Q Consensus       113 ~----------~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------  174 (294)
                      .          +...  .++.  ...  ..................+..+.+.+.+.+ ||+||||+||+....      
T Consensus       387 ~~~~~~~~~~~v~~~~~~~l~--~~~--~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~-~D~vviD~~p~~~tl~ll~~p  461 (589)
T 1ihu_A          387 PHEETERYRQHVLETKGKELD--EAG--KRLLEEDLRSPCTEEIAVFQAFSRVIREAG-KRFVVMDTAPTGHTLLLLDAT  461 (589)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC--HHH--HHHHHHHTTSHHHHHHHHHHHHTTTGGGGG-TSEEEESCCCCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhhhccCC--hhh--HHHHHHHhcCCChHHHHHHHHHHHHHhccC-CCEEEEcCCCCccHHHHHHhH
Confidence            0          0000  0111  000  000000000000001113444444443334 999999999973210      


Q ss_pred             ----------------HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        175 ----------------HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       175 ----------------~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                                      ....+..+....+|.+++|+.++..++..+.++++.+++.+++..++|+|++.+
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~  531 (589)
T 1ihu_A          462 GAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLS  531 (589)
T ss_dssp             ------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence                            111122222235799999999999999999999999999999999999999874

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=99.75  E-value=1.5e-17  Score=149.51  Aligned_cols=166  Identities=18%  Similarity=0.207  Sum_probs=105.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec-
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI-  125 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~-  125 (294)
                      |.+|.++++|||+||||+|.+||..++  ..|+||+++|+ + .+++..+||.........        ..++++.+.. 
T Consensus         1 M~~i~~~~gkGG~GKTt~a~~la~~la--~~g~~vllvd~-~-~~~l~~~~~~~~~~~~~~--------v~~~L~~~eid   68 (374)
T 3igf_A            1 MALILTFLGKSGVARTKIAIAAAKLLA--SQGKRVLLAGL-A-EPVLPLLLEQTLTPDPQQ--------IAPNLEVVQFQ   68 (374)
T ss_dssp             -CEEEEEECSBHHHHHHHHHHHHHHHH--HTTCCEEEEEC-S-CSHHHHHHTSCCCSSCEE--------EETTEEEEECC
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCeEEEeC-C-CCChHHhhCCCCCCCccc--------ccccccccccC
Confidence            356788899999999999999999999  89999999999 5 568888888764321111        0112221100 


Q ss_pred             -----------------------ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------
Q psy11347        126 -----------------------GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------  173 (294)
Q Consensus       126 -----------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------  173 (294)
                                             +.......+.....+......+..+.+.+...+ ||+||+|+||....         
T Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~-yD~VIvDtpPtg~tLrlL~lP~~  147 (374)
T 3igf_A           69 SSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGK-YDTIVYDGTGDAFTLRMLGLPES  147 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTC-CSEEEEECCCSHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccC-CCEEEEeCCCChHHhhhhhhhHH
Confidence                                   000000111111111112223344444444334 99999999983210         


Q ss_pred             --HHH---------------------------------------------------HHHHHhhcCCCcEEEEecCCchhh
Q psy11347        174 --EHL---------------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       174 --~~~---------------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                        +.+                                                   .....+.....+.+++|++|+..+
T Consensus       148 l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~s  227 (374)
T 3igf_A          148 LSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLE  227 (374)
T ss_dssp             HHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccH
Confidence              000                                                   011222223446799999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENM  225 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~  225 (294)
                      +..+.+.++.+.+.+++..++|+||
T Consensus       228 l~ea~r~~~~L~~~gi~v~gvVvN~  252 (374)
T 3igf_A          228 VVSVRYLWGSAQQIGLTIGGVIQVS  252 (374)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCccEEEEcC
Confidence            9999999999999999999999999

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.72  E-value=1.8e-17  Score=158.56  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=111.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +++|.|+++|||+||||+|++||..++  ..|+||++||+|+ .++++..|+.+..........      .+++......
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA--~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~------~~~l~~~~~d   77 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIAS------VPGLSALEID   77 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTT------STTEEEEECC
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHH--HCCCcEEEEECCC-CcCHHHHhCCcccCCCceecc------chhhhhccCC
Confidence            556779999999999999999999999  8899999999999 489999998865421111111      1122221110


Q ss_pred             cc-------------cCCC-C--------cceee---cCccchHHHHHHHH--hhccCCCccEEEEcCCCCCCh------
Q psy11347        127 FL-------------LNSP-D--------DAVIW---RGPKKNTMIRQFLS--EVDWGNGLEYLLIDTPPGTSD------  173 (294)
Q Consensus       127 ~~-------------~~~~-~--------~~~~~---~~~~~~~~l~~~l~--~l~~~~~yd~IiiD~p~~~~~------  173 (294)
                      ..             ..+. .        ..+..   ..-.....+..+++  .+.  ++||+||||+||....      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~--~~yD~VIiDt~P~~~~lrll~l  155 (589)
T 1ihu_A           78 PQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL--TRFDHIIFDTAPTGHTIRLLQL  155 (589)
T ss_dssp             HHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH--HHCSEEEESSCCCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc--ccCCEEEECCCCchhHHHHHHh
Confidence            00             0000 0        00000   00001224556666  333  3399999999985321      


Q ss_pred             -----------------------------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEec
Q psy11347        174 -----------------------------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN  224 (294)
Q Consensus       174 -----------------------------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN  224 (294)
                                                   .+......+.....+.+++|+.++..++..+.++++.+++.+++..++|+|
T Consensus       156 P~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN  235 (589)
T 1ihu_A          156 PGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVIN  235 (589)
T ss_dssp             GGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEc
Confidence                                         001122223223345799999999999999999999999999999999999


Q ss_pred             cccc
Q psy11347        225 MATF  228 (294)
Q Consensus       225 ~~~~  228 (294)
                      ++.+
T Consensus       236 ~v~~  239 (589)
T 1ihu_A          236 GVLP  239 (589)
T ss_dssp             EECC
T ss_pred             CCcC
Confidence            9874

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=99.61  E-value=2.7e-15  Score=126.40  Aligned_cols=194  Identities=15%  Similarity=0.112  Sum_probs=118.9

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe---cCCCCCChhhhccccccccccccCCCCcceeccCeE
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD---LDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLS  121 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD---~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~  121 (294)
                      ..|+.|.|.+..+|+||||++.+|+.+|+  ++|++|.++.   ..+...+ .   +....+..........-...-+..
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~--~~G~~V~~~KPv~~g~~~~~-~---~~~~~D~~~~~~~~~~~~~~~~~~   75 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCE--HQNIKSLCLKPVASGQSQFS-E---LCEDVESILNAYKHKFTAAEINLI   75 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHH--HTTCCEEEECSEEESBCSSS-S---SBHHHHHHHHHTTTSSCHHHHCSE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHH--HCCCeeEEecceeecCccCC-C---CCChHHHHHHhcCCCCChhhEEEE
Confidence            34789999999999999999999999999  8999999975   1111100 0   000001000111111000001122


Q ss_pred             EEec--ccccCCCCcceeecCccchHHHHHHHHh-hccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEE
Q psy11347        122 VMSI--GFLLNSPDDAVIWRGPKKNTMIRQFLSE-VDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIV  192 (294)
Q Consensus       122 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vli  192 (294)
                      .+..  ......   .. .........+.+.++. +.  ++||++|||+++++...      ....+..+    ..-+|+
T Consensus        76 ~~~~p~sp~~aa---~~-~~~~i~~~~i~~~~~~~l~--~~~D~vlIEgaggl~~p~~~~~~~adla~~l----~~pviL  145 (228)
T 3of5_A           76 SFNQAVAPHIIA---AK-TKVDISIENLKQFIEDKYN--QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL----QIPVLL  145 (228)
T ss_dssp             EESSSSCHHHHH---HH-TTCCCCHHHHHHHHHGGGG--SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH----TCCEEE
T ss_pred             EECCCCCHHHHH---HH-cCCCCCHHHHHHHHHHHHH--ccCCEEEEECCCccccccccchhHHHHHHHc----CCCEEE
Confidence            2211  000000   00 0011233467778887 66  34999999999765321      22333322    233899


Q ss_pred             ecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347        193 VTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI  264 (294)
Q Consensus       193 v~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~  264 (294)
                      |+.....++..+...++.+...+.++.|+|+|+++..       ..   ......+.+.+.+|++++++||.
T Consensus       146 V~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~-------~~---~~~~~~~~l~~~~g~pvLG~iP~  207 (228)
T 3of5_A          146 VSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN-------IK---YIDEQINTIEELSGYKCSAKISR  207 (228)
T ss_dssp             EEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT-------CS---CHHHHHHHHHHHHSCCCSEEEES
T ss_pred             EEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc-------ch---hhHHHHHHHHHhhCCCEEEECCC
Confidence            9999999999999999999999999999999998731       11   12334566666689999999993

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.60  E-value=9.6e-15  Score=133.95  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      +++|+|+ ++||+||||++.+||.+|+  .. |++|+++|+|++.+.....+..              .....++++++.
T Consensus       100 ~~vI~iv-G~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~r~~a~~ql~~--------------~~~~~~l~v~~~  162 (433)
T 2xxa_A          100 PAVVLMA-GLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVYRPAAIKQLET--------------LAEQVGVDFFPS  162 (433)
T ss_dssp             SEEEEEE-CSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCSSTTHHHHHHH--------------HHHHHTCEECCC
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCCCccHHHHHHh--------------hcccCCeeEEeC
Confidence            5677777 6999999999999999999  77 9999999999987654332210              112356777665


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHH
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~  202 (294)
                      +...            .....+.+.+..+...+ ||+||||+||....  .....+..+. ....+.+++|+++...  .
T Consensus       163 ~~~~------------dp~~i~~~~l~~~~~~~-~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~  227 (433)
T 2xxa_A          163 DVGQ------------KPVDIVNAALKEAKLKF-YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--Q  227 (433)
T ss_dssp             CSSS------------CHHHHHHHHHHHHHHTT-CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--T
T ss_pred             CCCC------------CHHHHHHHHHHHHHhCC-CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--H
Confidence            4311            11224466777765334 99999999986642  2222221110 1367888888876532  2


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+...++.+.. ++++.++|+|+++..       .     ....+..+.+.++.|+.
T Consensus       228 ~~~~~~~~f~~-~l~i~gvVlnK~D~~-------~-----~~g~~l~i~~~~~~Pi~  271 (433)
T 2xxa_A          228 DAANTAKAFNE-ALPLTGVVLTKVDGD-------A-----RGGAALSIRHITGKPIK  271 (433)
T ss_dssp             THHHHHHHHHH-HSCCCCEEEECTTSS-------S-----CCTHHHHHHHHHCCCEE
T ss_pred             HHHHHHHHHhc-cCCCeEEEEecCCCC-------c-----cHHHHHHHHHHHCCCeE
Confidence            33344444432 356679999999832       1     11244566666676543

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=99.58  E-value=9.1e-15  Score=123.87  Aligned_cols=208  Identities=10%  Similarity=0.031  Sum_probs=124.5

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccc--cccccc---cccC-CCCc
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL--LNEQVH---QSAS-GWSP  113 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~--~~~~~~---~~~~-~~~~  113 (294)
                      |+.+.+|++.|.|+++.+|+|||+++..|+.+|+  .+|++|.++.-  .+.+....-+.  +...+.   .... ....
T Consensus        14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~--~~G~~V~~fKP--v~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~   89 (242)
T 3qxc_A           14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCN--ACGVKTILLKP--IETGVNDAINHSSDAHLFLQDNRLLDRSLTL   89 (242)
T ss_dssp             -----CCCEEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEECC--EECSCCTTTCCCSHHHHHHHHHHTTCTTCCH
T ss_pred             hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH--hCCCceEEEee--eecCCcccCCCCchHHHHHHHHHHHhCCCCh
Confidence            5678889999999999999999999999999999  89999999852  11000000000  000110   0111 1111


Q ss_pred             ceeccCeEEE--ecccccCCCCcceeecC--ccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhh
Q psy11347        114 VFLEENLSVM--SIGFLLNSPDDAVIWRG--PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLK  183 (294)
Q Consensus       114 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~  183 (294)
                       .... ...+  |..+....   .. ...  ....+.+.+.++.+.  ..||+||||+++++...      ...++..+ 
T Consensus        90 -~~~~-p~~~~~p~sp~~aa---~~-~g~~~~i~~~~I~~~~~~l~--~~~D~vlIEGagGl~~pl~~~~~~adlA~~l-  160 (242)
T 3qxc_A           90 -KDIS-FYRYHKVSAPLIAQ---QE-EDPNAPIDTDNLTQRLHNFT--KTYDLVIVEGAGGLCVPITLEENMLDFALKL-  160 (242)
T ss_dssp             -HHHC-CEECSSSSCHHHHH---HH-HCTTCCCCHHHHHHHHHHGG--GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-
T ss_pred             -HHee-eEEECCCCChHHHH---HH-cCCCCcCCHHHHHHHHHHHH--hcCCEEEEECCCCccccccccchHHHHHHHc-
Confidence             0001 1111  11110000   00 000  223456788888876  34999999999776421      12333333 


Q ss_pred             cCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhh----cCCcee
Q psy11347        184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE----LSVPFL  259 (294)
Q Consensus       184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~g~~~l  259 (294)
                        .+ -||+|+.....++..+...++.++..+++ .|+|+|+++.       ...+.    +....++++    ...+++
T Consensus       161 --~~-pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~-------~~~~~----~~~~p~le~~~~~~~~~~~  225 (242)
T 3qxc_A          161 --KA-KMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGN-------NTAFH----SISLPYIELFNTRSNNPIV  225 (242)
T ss_dssp             --TC-EEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTT-------CCHHH----HHTHHHHHHHHHHCSSCCE
T ss_pred             --CC-CEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCC-------ccchh----hhhHHHHHHhcCcccCCce
Confidence              33 38999999999999999999999999999 9999999873       22222    333444444    446888


Q ss_pred             eccCCCchhhhhccCC
Q psy11347        260 GSVPIDPLVTRHCDEG  275 (294)
Q Consensus       260 ~~Ip~~~~~~~a~~~g  275 (294)
                      .++|+-+.+.+++..|
T Consensus       226 ~~~~~~~~l~~~~~~~  241 (242)
T 3qxc_A          226 IFQQSLKVLMSFALKG  241 (242)
T ss_dssp             EGGGCHHHHHHHHHSC
T ss_pred             eccccHHHHHHHHhcC
Confidence            8888877777766555

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.57  E-value=4.2e-14  Score=123.64  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=105.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+++++ |++|+||||++.+||..++  ..|++|+++|+|++.+.....+...              ....++++++..
T Consensus        98 ~~vi~i~-G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~--------------~~~~~v~v~~~~  160 (297)
T 1j8m_F           98 PYVIMLV-GVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQL--------------GQQIGVPVYGEP  160 (297)
T ss_dssp             SEEEEEE-CSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHH--------------HHHHTCCEECCT
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHH--------------hccCCeEEEecC
Confidence            4556665 7999999999999999999  8899999999999876543332210              112355555532


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hH--HHHHH---HHhhcCCCcEEEEecCCchh
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DE--HLSLV---QYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~--~~~~~---~~l~~~~ad~vliv~~~~~~  199 (294)
                      .            .......+.+.++.+++.+ ||+||||+||...  ..  ....+   ...  ..+|.+++|+++...
T Consensus       161 ~------------~~~p~~~~~~~l~~~~~~~-~D~ViIDTpg~~~~~~~~~l~~el~~i~~~--~~~d~vllVvda~~g  225 (297)
T 1j8m_F          161 G------------EKDVVGIAKRGVEKFLSEK-MEIIIVDTAGRHGYGEEAALLEEMKNIYEA--IKPDEVTLVIDASIG  225 (297)
T ss_dssp             T------------CCCHHHHHHHHHHHHHHTT-CSEEEEECCCSCCTTCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG
T ss_pred             C------------CCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCcccccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch
Confidence            1            0111224566777765334 9999999998776  31  11111   112  368889999877642


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                        ..+...++.+.. ..+..++|+|+++..            .....+..+...++.|+.
T Consensus       226 --~~~~~~~~~~~~-~~~i~gvVlnk~D~~------------~~~g~~~~~~~~~~~pi~  270 (297)
T 1j8m_F          226 --QKAYDLASKFNQ-ASKIGTIIITKMDGT------------AKGGGALSAVAATGATIK  270 (297)
T ss_dssp             --GGHHHHHHHHHH-TCTTEEEEEECGGGC------------TTHHHHHHHHHTTTCCEE
T ss_pred             --HHHHHHHHHHHh-hCCCCEEEEeCCCCC------------cchHHHHHHHHHHCcCEE
Confidence              334444444444 467789999999842            112345566777787776

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=99.54  E-value=9.3e-14  Score=118.31  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=119.1

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceecc
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE  118 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~  118 (294)
                      ++....+.|+.|.|.+...|+|||+++..|+.+|+  .+|++|.++.-=..+.. ..  +.+...+ .........   .
T Consensus        18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~--~~G~~V~~fKPv~~g~~-~~--~~D~~~~-~~~~g~~~~---~   88 (251)
T 3fgn_A           18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAAR--QAGIDVAVCKPVQTGTA-RG--DDDLAEV-GRLAGVTQL---A   88 (251)
T ss_dssp             ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHH--HTTCCEEEEEEEECCGG-GT--CCHHHHH-HHHHCCCEE---E
T ss_pred             HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeeeecCCC-CC--CHHHHHH-HHHcCCCCC---C
Confidence            44444456899999999999999999999999999  89999999862100000 00  0000000 111111110   1


Q ss_pred             CeEEEe--cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------HHHHHHHHhhcCCCcE
Q psy11347        119 NLSVMS--IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD-------EHLSLVQYLKGLPDIG  189 (294)
Q Consensus       119 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~-------~~~~~~~~l~~~~ad~  189 (294)
                      +...+.  ..+...   ....-......+.+.+.++.+.  ..||+||||+++++..       ....++..    ...-
T Consensus        89 ~~~~~~~p~sP~~a---a~~~~~~~~~~~~i~~~~~~l~--~~~D~vlIEGagGl~~pl~~~~~~~adla~~----l~~p  159 (251)
T 3fgn_A           89 GLARYPQPMAPAAA---AEHAGMALPARDQIVRLIADLD--RPGRLTLVEGAGGLLVELAEPGVTLRDVAVD----VAAA  159 (251)
T ss_dssp             EEEECSSSSCHHHH---HHHTTCCCCCHHHHHHHHHTTC--CTTCEEEEECSSSTTCEEETTTEEHHHHHHH----TTCE
T ss_pred             CCeeECCCCChHHH---HHHcCCCCCCHHHHHHHHHHHH--hcCCEEEEECCCCCcCCcCcccchHHHHHHH----cCCC
Confidence            111110  000000   0000000123446788888876  4499999999987632       11223222    3455


Q ss_pred             EEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347        190 AIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL  267 (294)
Q Consensus       190 vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~  267 (294)
                      ||+|++.+..++..+...++.+...+.++.|+|+|+++.       ...+.   .....+.+++. +|++|+||++..
T Consensus       160 VILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~-------~~~~~---~~~~~~~le~~-vpvLG~iP~~~~  226 (251)
T 3fgn_A          160 ALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPD-------PPGLV---AASNRSALARI-AMVRAALPAGAA  226 (251)
T ss_dssp             EEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECS-------SCCHH---HHHHHHHHHHH-SCEEEEEETTGG
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCC-------chhhh---hhhHHHHHHHh-CCEEEEeeCCCC
Confidence            899999999999999999999999999999999999852       11111   11223444555 999999999854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.52  E-value=1.8e-13  Score=119.64  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      .+++++++ +++|+||||++.+||..++  ..|++|+++|+|++.+.....++.              .....++++++.
T Consensus        97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~--------------~~~~~~l~~~~~  159 (295)
T 1ls1_A           97 DRNLWFLV-GLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRL--------------LGEKVGVPVLEV  159 (295)
T ss_dssp             SSEEEEEE-CCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHH--------------HHHHHTCCEEEC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHH--------------hcccCCeEEEEc
Confidence            36677777 8999999999999999999  789999999999986543322211              011245667765


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHh-hcCCCcEEEEecCCchhhHH
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYL-KGLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l-~~~~ad~vliv~~~~~~s~~  202 (294)
                      +...            ......+..+..+...+ ||+||+|+||....+  .+..+..+ ....+|.+++|++... . .
T Consensus       160 ~~~~------------~p~~l~~~~l~~~~~~~-~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~  224 (295)
T 1ls1_A          160 MDGE------------SPESIRRRVEEKARLEA-RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-Q  224 (295)
T ss_dssp             CTTC------------CHHHHHHHHHHHHHHHT-CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-H
T ss_pred             CCCC------------CHHHHHHHHHHHHHhCC-CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-H
Confidence            4210            01113455666653224 999999999876432  12211111 0024777888887653 2 3


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+...++.+.. ..+..++|+|+++..       .     ....+-.+.+..|+|+.
T Consensus       225 ~~~~~~~~~~~-~~~i~givlnk~d~~-------~-----~~g~~~~~~~~~~~pi~  268 (295)
T 1ls1_A          225 EALSVARAFDE-KVGVTGLVLTKLDGD-------A-----RGGAALSARHVTGKPIY  268 (295)
T ss_dssp             HHHHHHHHHHH-HTCCCEEEEECGGGC-------S-----SCHHHHHHHHHHCCCEE
T ss_pred             HHHHHHHHHhh-cCCCCEEEEECCCCC-------c-----cHHHHHHHHHHHCcCEE
Confidence            33333444432 356789999999842       1     12345566677888877

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.51  E-value=2e-13  Score=120.60  Aligned_cols=172  Identities=14%  Similarity=0.174  Sum_probs=101.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +++|+++|. +|+||||++.+||..++  ..|++|+++|+|++.+.....+.           .|.......++.++|.+
T Consensus       105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~-----------~~~~~~~~~~l~vip~~  170 (320)
T 1zu4_A          105 LNIFMLVGV-NGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLE-----------EWIKTRLNNKVDLVKAN  170 (320)
T ss_dssp             CEEEEEESS-TTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHH-----------HHHTTTSCTTEEEECCS
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHH-----------HHHhccccCCceEEeCC
Confidence            567888865 99999999999999999  78999999999987543211110           01001124578888654


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHH---hh----cCCCcEEEEecCCc
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQY---LK----GLPDIGAIVVTTPQ  197 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~---l~----~~~ad~vliv~~~~  197 (294)
                      .....+.          ......+...+.  ++||+||||+||.....  .+..+..   +.    ...+|.+++|+...
T Consensus       171 ~~~~~p~----------~~~~~~l~~~~~--~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~  238 (320)
T 1zu4_A          171 KLNADPA----------SVVFDAIKKAKE--QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT  238 (320)
T ss_dssp             STTCCHH----------HHHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG
T ss_pred             CCCCCHH----------HHHHHHHHHHHh--cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence            3211110          112223333333  34999999999987642  1111111   11    12478888888766


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      . ..+.+... +.+. ...+..|+|+|+++..       .     ....+..+...+++|+.
T Consensus       239 ~-~~~~l~~~-~~~~-~~~~i~GvVltk~d~~-------~-----~~g~~~~~~~~~~~Pi~  285 (320)
T 1zu4_A          239 T-GQNGVIQA-EEFS-KVADVSGIILTKMDST-------S-----KGGIGLAIKELLNIPIK  285 (320)
T ss_dssp             G-THHHHHHH-HHHT-TTSCCCEEEEECGGGC-------S-----CTTHHHHHHHHHCCCEE
T ss_pred             C-cHHHHHHH-HHHh-hcCCCcEEEEeCCCCC-------C-----chhHHHHHHHHHCcCEE
Confidence            3 33333332 2332 2356789999999842       1     12245667777888875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.49  E-value=2.8e-13  Score=123.52  Aligned_cols=168  Identities=15%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+|+++ +++|+||||++.+||.+++  ..|++|+++|+|++.+.....+...              ....++++++.+
T Consensus        98 ~~vi~i~-G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~r~aa~~qL~~~--------------~~~~gv~v~~~~  160 (425)
T 2ffh_A           98 RNLWFLV-GLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLL--------------GEKVGVPVLEVM  160 (425)
T ss_dssp             SEEEEEE-CCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSSCHHHHHHHHHH--------------HHHHTCCEEECC
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccccCchhHHHHHHh--------------cccCCccEEecC
Confidence            5667776 7899999999999999999  8899999999999875443333210              112456677654


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLK-GLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~-~~~ad~vliv~~~~~~s~~~  203 (294)
                      ..    .        .....+.+.++.++..+ ||+|||||||.....  .+..+..+. ....|.+++|++....  ..
T Consensus       161 ~~----~--------~p~~i~~~~l~~~~~~~-~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~  225 (425)
T 2ffh_A          161 DG----E--------SPESIRRRVEEKARLEA-RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QE  225 (425)
T ss_dssp             TT----C--------CHHHHHHHHHHHHHHTT-CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--TH
T ss_pred             CC----C--------CHHHHHHHHHHHHHHCC-CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HH
Confidence            31    0        01124466777663234 999999999876422  222111110 0257888888876532  34


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +...++.+.. .++..++|+|+++..            .....+..+.+.+|.|+.
T Consensus       226 av~~a~~f~~-~l~i~GVIlTKlD~~------------~~~g~alsi~~~~g~PI~  268 (425)
T 2ffh_A          226 ALSVARAFDE-KVGVTGLVLTKLDGD------------ARGGAALSARHVTGKPIY  268 (425)
T ss_dssp             HHHHHHHHHH-HTCCCEEEEESGGGC------------SSCHHHHHHHHHHCCCEE
T ss_pred             HHHHHHHHHh-cCCceEEEEeCcCCc------------ccHHHHHHHHHHHCCCEE
Confidence            4444444432 356679999999741            112345556667777744

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.40  E-value=9.1e-12  Score=113.78  Aligned_cols=168  Identities=16%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+|.++ |.+|+||||++.+||.+|+  ..|++|+++++|+..+.....+....              ...++.+....
T Consensus       100 p~vIliv-G~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~aa~eqL~~~~--------------~~~gvpv~~~~  162 (443)
T 3dm5_A          100 PTILLMV-GIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPGAYHQLRQLL--------------DRYHIEVFGNP  162 (443)
T ss_dssp             SEEEEEE-CCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTHHHHHHHHHH--------------GGGTCEEECCT
T ss_pred             CeEEEEE-CcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHH--------------HhcCCcEEecC
Confidence            4555555 5599999999999999999  89999999999998754322222110              01233333221


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHh-hcCCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYL-KGLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l-~~~~ad~vliv~~~~~~s~~~  203 (294)
                      .            .......+.+.++.+...+ ||+|||||++....  .....+..+ ....+|.+++|+++...  ..
T Consensus       163 ~------------~~dp~~i~~~al~~a~~~~-~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~  227 (443)
T 3dm5_A          163 Q------------EKDAIKLAKEGVDYFKSKG-VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQ  227 (443)
T ss_dssp             T------------CCCHHHHHHHHHHHHHHTT-CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GG
T ss_pred             C------------CCCHHHHHHHHHHHHHhCC-CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hh
Confidence            1            0112234566677766334 99999999975532  222111111 01257889999877652  22


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +....+.+.+ ..+..++|+|+++..            .....+..+....+.|+.
T Consensus       228 a~~~a~~f~~-~~~i~gVIlTKlD~~------------~~gG~~ls~~~~~g~PI~  270 (443)
T 3dm5_A          228 AYNQALAFKE-ATPIGSIIVTKLDGS------------AKGGGALSAVAATGAPIK  270 (443)
T ss_dssp             HHHHHHHHHH-SCTTEEEEEECCSSC------------SSHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHh-hCCCeEEEEECCCCc------------ccccHHHHHHHHHCCCEE
Confidence            3333344442 345679999999831            122345566667787775

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.38  E-value=3.2e-13  Score=115.72  Aligned_cols=45  Identities=27%  Similarity=0.465  Sum_probs=40.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM   93 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l   93 (294)
                      +...+.++++|||+||||++.+||..++   .|++|+++|+|++.+.+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCSSCSCC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCCCcccc
Confidence            4678999999999999999999999998   58999999999987654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.37  E-value=9.2e-12  Score=114.11  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=99.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ++|+++| .+|+||||++.+||..++  ..|++|+++|+|++.+.....+..              .....++.+.+.+.
T Consensus       100 ~vI~ivG-~~GvGKTTla~~La~~l~--~~G~kVllv~~D~~r~~a~~qL~~--------------~~~~~gv~v~~~~~  162 (432)
T 2v3c_C          100 NVILLVG-IQGSGKTTTAAKLARYIQ--KRGLKPALIAADTYRPAAYEQLKQ--------------LAEKIHVPIYGDET  162 (432)
T ss_dssp             CCEEEEC-CSSSSTTHHHHHHHHHHH--HHHCCEEEECCSCCCTTGGGSSHH--------------HHHHSSCCEECCSS
T ss_pred             eEEEEEC-CCCCCHHHHHHHHHHHHH--HcCCeEEEEeccccCchHHHHHHH--------------hhhccCcceEecCC
Confidence            4677765 699999999999999999  789999999999987654322211              01123555555431


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV  204 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~  204 (294)
                      ...++           ...+...+..+.  + ||+||||+|+.....  ....+..+.. ..+|.+++|+++....  .+
T Consensus       163 ~~~dp-----------~~i~~~~l~~~~--~-~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~  226 (432)
T 2v3c_C          163 RTKSP-----------VDIVKEGMEKFK--K-ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QA  226 (432)
T ss_dssp             SCCSS-----------STTHHHHHHTTS--S-CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GH
T ss_pred             CCCCH-----------HHHHHHHHHHhh--C-CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HH
Confidence            10000           012345566552  4 999999999876532  2222222211 2578888888664432  23


Q ss_pred             HHHHHHHHhcCC-CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        205 RKEIDFCRKVNI-PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       205 ~~~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.+.. .. +..++|+|+++..       .     ....+..+.+.++.|+.
T Consensus       227 ~~~~~~~~~-~~~~i~gvVlnK~D~~-------~-----~~g~~l~~~~~~~~pi~  269 (432)
T 2v3c_C          227 GIQAKAFKE-AVGEIGSIIVTKLDGS-------A-----KGGGALSAVAETKAPIK  269 (432)
T ss_dssp             HHHHHHHHT-TSCSCEEEEEECSSSC-------S-----TTHHHHHHHHHSSCCEE
T ss_pred             HHHHHHHhh-cccCCeEEEEeCCCCc-------c-----chHHHHHHHHHHCCCEE
Confidence            333333432 35 6689999999831       0     11223446667777765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.32  E-value=1.2e-11  Score=115.12  Aligned_cols=149  Identities=9%  Similarity=0.062  Sum_probs=88.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .++|+++ |.+|+||||++.+||.+++  ..|++|+++|+|++.+.....+....              ...++.+++..
T Consensus       101 ~~vI~iv-G~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~~r~aa~~qL~~~~--------------~~~~i~v~~~~  163 (504)
T 2j37_W          101 QNVIMFV-GLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADTFRAGAFDQLKQNA--------------TKARIPFYGSY  163 (504)
T ss_dssp             -EEEEEE-CSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSSHHHHHHHHHH--------------HHHTCCEEECC
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccccchhHHHHHHHHh--------------hccCceEEccC
Confidence            4567776 6689999999999999999  78999999999998765433322110              11234444322


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~  203 (294)
                      ..    .        .....+.+.+..+.+.+ ||+||||||+....  .....+..+. ...+|.+++|+++.... . 
T Consensus       164 ~~----~--------dp~~i~~~al~~~~~~~-~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~-  228 (504)
T 2j37_W          164 TE----M--------DPVIIASEGVEKFKNEN-FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A-  228 (504)
T ss_dssp             CC----S--------CHHHHHHHHHHHHHHTT-CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-
T ss_pred             CC----C--------CHHHHHHHHHHHHHHCC-CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-
Confidence            10    0        11123455566654334 99999999987642  2211111110 02578888888775421 1 


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .....+.+.+. +++.++|+|+++.
T Consensus       229 ~~~~a~~~~~~-~~i~gvVlNK~D~  252 (504)
T 2j37_W          229 CEAQAKAFKDK-VDVASVIVTKLDG  252 (504)
T ss_dssp             HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred             HHHHHHHHHhh-cCceEEEEeCCcc
Confidence            22333344332 4555899999983

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.24  E-value=7.6e-11  Score=107.64  Aligned_cols=168  Identities=15%  Similarity=0.135  Sum_probs=96.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      ..+.++.|.+|+||||++.+||.+++  ..|++|+++|+|+..+.....+....              ...++.+.....
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~--------------~~~gv~~~~~~~  160 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLG--------------NQIGVQVYGEPN  160 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHH--------------HTTTCCEECCTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHH--------------HhcCCceeeccc
Confidence            34555558899999999999999999  88999999999986543221111100              001222221110


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC----hHHHHHHHHhh-cCCCcEEEEecCCchhhHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS----DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLL  202 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~----~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~  202 (294)
                                  .......+...+..+...+ ||+||||+|+...    ...+..+..+. ....+.+++|++....  .
T Consensus       161 ------------~~dp~~i~~~al~~a~~~~-~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q  225 (433)
T 3kl4_A          161 ------------NQNPIEIAKKGVDIFVKNK-MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--Q  225 (433)
T ss_dssp             ------------CSCHHHHHHHHHHHTTTTT-CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--G
T ss_pred             ------------cCCHHHHHHHHHHHHHhcC-CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--h
Confidence                        0111224556677766444 9999999997533    22222221111 1245778888776542  2


Q ss_pred             HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+....+.+.+ .....++|+|+++..            .....+-.+....+.|+.
T Consensus       226 ~a~~~a~~f~~-~~~~~gVIlTKlD~~------------a~~G~als~~~~~g~Pi~  269 (433)
T 3kl4_A          226 KAYDLASRFHQ-ASPIGSVIITKMDGT------------AKGGGALSAVVATGATIK  269 (433)
T ss_dssp             GGHHHHHHHHH-HCSSEEEEEECGGGC------------SCHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHhc-ccCCcEEEEeccccc------------ccchHHHHHHHHHCCCEE
Confidence            23334444442 234579999999831            122345556666787764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.23  E-value=2.1e-10  Score=100.41  Aligned_cols=169  Identities=14%  Similarity=0.163  Sum_probs=95.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      .+++|+++|. +|+||||++.+||..++  ..|++|+++|+|...+.....+.           .|   ....++.+++.
T Consensus       103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~~a~eqL~-----------~~---~~~~gl~~~~~  165 (306)
T 1vma_A          103 PPFVIMVVGV-NGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRAAAIEQLK-----------IW---GERVGATVISH  165 (306)
T ss_dssp             SCEEEEEECC-TTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHH-----------HH---HHHHTCEEECC
T ss_pred             CCeEEEEEcC-CCChHHHHHHHHHHHHH--hcCCEEEEEccccccHHHHHHHH-----------HH---HHHcCCcEEec
Confidence            3567777765 99999999999999999  78999999999986532211110           00   00123444432


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCC
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTP  196 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~  196 (294)
                      ..   .         ......+.+.+......+ ||+||+|+|+......  +..+..+.       ....+.+++|++.
T Consensus       166 ~s---~---------~~~~~v~~~al~~a~~~~-~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda  232 (306)
T 1vma_A          166 SE---G---------ADPAAVAFDAVAHALARN-KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDA  232 (306)
T ss_dssp             ST---T---------CCHHHHHHHHHHHHHHTT-CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEG
T ss_pred             CC---c---------cCHHHHHHHHHHHHHhcC-CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEC
Confidence            21   0         011112222233222124 9999999997643211  11111111       1246778888866


Q ss_pred             chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        197 QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      . ...+.+.. .+.+.+ ..+..++|+|+++..            .....+-.+...+++|+.
T Consensus       233 ~-t~~~~l~~-a~~~~~-~~~i~gvVlTk~D~~------------~~gG~~l~~~~~~~~Pi~  280 (306)
T 1vma_A          233 T-TGQNGLVQ-AKIFKE-AVNVTGIILTKLDGT------------AKGGITLAIARELGIPIK  280 (306)
T ss_dssp             G-GHHHHHHH-HHHHHH-HSCCCEEEEECGGGC------------SCTTHHHHHHHHHCCCEE
T ss_pred             C-CCHHHHHH-HHHHHh-cCCCCEEEEeCCCCc------------cchHHHHHHHHHHCCCEE
Confidence            5 22233333 233332 256679999999842            122346677777888777

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.21  E-value=2.3e-10  Score=99.89  Aligned_cols=163  Identities=11%  Similarity=0.107  Sum_probs=92.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +++++++| .+|+||||++.+||..++ ...|++|+++|.|++.+.....+.....     .         .++.+... 
T Consensus       105 g~vi~lvG-~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~~r~~a~eqL~~~~~-----~---------~gl~~~~~-  167 (296)
T 2px0_A          105 SKYIVLFG-STGAGKTTTLAKLAAISM-LEKHKKIAFITTDTYRIAAVEQLKTYAE-----L---------LQAPLEVC-  167 (296)
T ss_dssp             SSEEEEEE-STTSSHHHHHHHHHHHHH-HTTCCCEEEEECCCSSTTHHHHHHHHHT-----T---------TTCCCCBC-
T ss_pred             CcEEEEEC-CCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCcccchHHHHHHHHHH-----h---------cCCCeEec-
Confidence            55777765 589999999999999998 1379999999999976543322211000     0         01110000 


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG-LPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~-~~ad~vliv~~~~~~s~~~  203 (294)
                            .         ....++..+..+.  + ||+||+|+++......  +..+..+.. ...+.+++|+... .....
T Consensus       168 ------~---------~~~~l~~al~~~~--~-~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~  228 (296)
T 2px0_A          168 ------Y---------TKEEFQQAKELFS--E-YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYED  228 (296)
T ss_dssp             ------S---------SHHHHHHHHHHGG--G-SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHH
T ss_pred             ------C---------CHHHHHHHHHHhc--C-CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHH
Confidence                  0         0123455565542  4 9999999997554321  222222221 1355556665322 12334


Q ss_pred             HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +.++.+.+.  .++..++|+|+++..            .....+..+...+|+|+.
T Consensus       229 ~~~~~~~~~--~l~~~giVltk~D~~------------~~~g~~~~~~~~~~~pi~  270 (296)
T 2px0_A          229 MKHIVKRFS--SVPVNQYIFTKIDET------------TSLGSVFNILAESKIGVG  270 (296)
T ss_dssp             HHHHTTTTS--SSCCCEEEEECTTTC------------SCCHHHHHHHHTCSCCCS
T ss_pred             HHHHHHHHh--cCCCCEEEEeCCCcc------------cchhHHHHHHHHHCcCEE
Confidence            444444443  245679999998732            112355667777887775

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.09  E-value=1.4e-10  Score=104.00  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=80.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhh-hccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPR-MMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~-~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      .+.++.|++|+||||++.+|+..++  ..|++|+++|.|++.+.... +++        ....+......+++.+.+...
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~--~~g~kV~vi~~Dp~~~~~~g~~l~--------d~~~~~~~~~~~~~~i~~~~~  149 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVDPSSTRTGGSILG--------DKTRMARLAVHPNAYIRPSPT  149 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC------------------------CHHHHTCTTEEEECCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hCCCceEEEecCCCCCcccchhcc--------chhhHHhhccCCCeeEEECCC
Confidence            3445567899999999999999999  89999999999997642110 011        111111111234555554432


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE  207 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~  207 (294)
                      ..    . .    .......++.+..+...+ ||++|+|+|+ +.......+     ..+|.+++|++++.....  ..+
T Consensus       150 ~~----~-~----~~~~~~t~d~i~~~~~~~-~~~iiiDTpG-i~~~~~~~~-----~~aD~vl~V~d~~~~~~~--~~l  211 (355)
T 3p32_A          150 SG----T-L----GGVTRATRETVVLLEAAG-FDVILIETVG-VGQSEVAVA-----NMVDTFVLLTLARTGDQL--QGI  211 (355)
T ss_dssp             -C----C-H----HHHHHHHHHHHHHHHHTT-CCEEEEEECS-CSSHHHHHH-----TTCSEEEEEEESSTTCTT--TTC
T ss_pred             Cc----c-c----cchhHHHHHHHHHHhhCC-CCEEEEeCCC-CCcHHHHHH-----HhCCEEEEEECCCCCccH--HHH
Confidence            10    0 0    011223344444444334 9999999995 443333333     689999999987553211  000


Q ss_pred             HHHHHhcCCCeeEEEeccccc
Q psy11347        208 IDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       208 l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ...+  .+. ...+|+||+|.
T Consensus       212 ~~~~--~~~-p~ivVlNK~Dl  229 (355)
T 3p32_A          212 KKGV--LEL-ADIVVVNKADG  229 (355)
T ss_dssp             CTTS--GGG-CSEEEEECCCG
T ss_pred             HHhH--hhc-CCEEEEECCCC
Confidence            0000  112 35789999883

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.97  E-value=4.1e-09  Score=87.53  Aligned_cols=43  Identities=21%  Similarity=0.142  Sum_probs=39.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP   91 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~   91 (294)
                      ++...|+++||||||||++.++|..++  ..|++|+++|+|+++.
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q~~   47 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETHGR   47 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCTTC
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCCCC
Confidence            567799999999999999999999999  8999999999999764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.82  E-value=1.2e-08  Score=100.73  Aligned_cols=92  Identities=16%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             CccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCC
Q psy11347        159 GLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPK  232 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~  232 (294)
                      .||++||++..++..      ....++..   ..+. ||+|++.....+..+...++.+...++++.|+|+|+...    
T Consensus       201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~---l~~P-VILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~----  272 (831)
T 4a0g_A          201 SDLLCLVETAGGVASPGPSGTLQCDLYRP---FRLP-GILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL----  272 (831)
T ss_dssp             -CEEEEEECCSSTTCBCTTSCBHHHHTGG---GCCC-EEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS----
T ss_pred             cCCEEEEECCCCccCCCCCCccHHHHHHH---cCCC-EEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch----
Confidence            399999999865421      12222222   3555 889999999999999999999998899999999998641    


Q ss_pred             CCCCCccCCCCchhHHHHH-hhcCCceeeccCCCch
Q psy11347        233 CTKPSEIFPKDSGGAEKMC-AELSVPFLGSVPIDPL  267 (294)
Q Consensus       233 ~~~~~~i~~~~~~~~~~~~-~~~g~~~l~~Ip~~~~  267 (294)
                               ...+.+.+++ +..++++++.||+.+.
T Consensus       273 ---------~~~~~l~~~l~~~~~v~vLg~lP~~~~  299 (831)
T 4a0g_A          273 ---------VNEVPLTSYLRNKVPVLVLPPVPKDPS  299 (831)
T ss_dssp             ---------CTHHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred             ---------hHHHHHHHHHHhCCCceeeCCCCCCCH
Confidence                     1233344443 3457777899998743

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.58  E-value=9.9e-08  Score=84.23  Aligned_cols=175  Identities=13%  Similarity=0.125  Sum_probs=113.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      ++++.++++..++||||++..|.+.+.  ++|.++.++-...     ...+-.      ......+.+            
T Consensus       152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~--~~G~~a~~~~tgq-----tg~~~~------~~gi~~Dav------------  206 (349)
T 2obn_A          152 CRRVLTVGTDMAIGKMSTSLELHWAAK--LRGWRSKFLATGQ-----TGVMLE------GDGVALDAV------------  206 (349)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEECCSH-----HHHHHH------SCSCCGGGS------------
T ss_pred             ceEEEEcCCCccccceeHHHHHHHHHH--hcCCcEEEEeccc-----hhhhhh------cCCcchhHH------------
Confidence            789999999999999999999999999  8999999864321     111000      000000000            


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH-HHHHHhhcCCCcEEEEecCCchhhH----
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL-SLVQYLKGLPDIGAIVVTTPQEVSL----  201 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~-~~~~~l~~~~ad~vliv~~~~~~s~----  201 (294)
                                  ........+..++..+.  ++||+|+|...+++..+.. .++..+.....|.+|++..+....+    
T Consensus       207 ------------~~df~aG~ve~~~~~~~--~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~  272 (349)
T 2obn_A          207 ------------RVDFAAGAVEQMVMRYG--KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNP  272 (349)
T ss_dssp             ------------BHHHHHHHHHHHHHHHT--TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCT
T ss_pred             ------------HHHHHhhhHHHHHHHhc--cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCC
Confidence                        00111113444555554  3499999999976532210 0123333347798999998876666    


Q ss_pred             -------HHHHHHHHHHHh-----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC-chh
Q psy11347        202 -------LDVRKEIDFCRK-----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID-PLV  268 (294)
Q Consensus       202 -------~~~~~~l~~l~~-----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~-~~~  268 (294)
                             +.+..+++.+..     .+.++.|+++|.+..       ..+.   ..+.++++.+.+|+|++..+.+. ..+
T Consensus       273 ~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~-------~~~~---~~~~~~~ie~~~glPv~d~~r~g~~~l  342 (349)
T 2obn_A          273 HVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHL-------DEYA---AKEAIAHTIAETGLPCTDVVRFGADVL  342 (349)
T ss_dssp             TSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTS-------CHHH---HHHHHHHHHHHHCSCEECHHHHCSHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-------CHHH---HHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence                   888888888865     778999999999762       1111   23566788888999999887655 344


Q ss_pred             hh
Q psy11347        269 TR  270 (294)
Q Consensus       269 ~~  270 (294)
                      .+
T Consensus       343 ~~  344 (349)
T 2obn_A          343 LD  344 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.57  E-value=4.8e-07  Score=80.40  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=74.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      ..+|+++ |++|+||||+..+|+..+.  ..|.+|.+++.|++..... .+++..        .....+...++..+.+.
T Consensus        56 ~~~i~i~-G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d~~~~~~~~~il~d~--------~~~~~~~~~~~~~i~~~  124 (341)
T 2p67_A           56 TLRLGVT-GTPGAGKSTFLEAFGMLLI--REGLKVAVIAVDPSSPVTGGSILGDK--------TRMNDLARAEAAFIRPV  124 (341)
T ss_dssp             SEEEEEE-ECTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-----------------------CTTTTCTTEEEEEE
T ss_pred             CEEEEEE-cCCCCCHHHHHHHHHHHHH--hcCCeEEEEeecCCcCCCCcceeccc--------chHHhhccCCCceeecC
Confidence            4556555 6999999999999999999  7899999999999753321 111110        00111111122222211


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHH
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVR  205 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~  205 (294)
                      ...      ..  ... ....+.+.+..+.+.+ |+++|+|||+.... ....   .  ..+|.+++|++++....  . 
T Consensus       125 ~~~------~~--l~g-~~~~~~~~~~~~~~~~-~~i~liDTpG~~~~-~~~~---~--~~aD~vl~Vvd~~~~~~--~-  185 (341)
T 2p67_A          125 PSS------GH--LGG-ASQRARELMLLCEAAG-YDVVIVETVGVGQS-ETEV---A--RMVDCFISLQIAGGGDD--L-  185 (341)
T ss_dssp             CC-------------C-HHHHHHHHHHHHHHTT-CSEEEEEEECCTTH-HHHH---H--TTCSEEEEEECC---------
T ss_pred             ccc------cc--cch-hHHHHHHHHHHhhccC-CCEEEEeCCCccch-HHHH---H--HhCCEEEEEEeCCccHH--H-
Confidence            100      00  000 0112222222222234 99999999965442 2222   2  68999999998854321  1 


Q ss_pred             HHHHHHHhcCCCeeEEEeccccc
Q psy11347        206 KEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       206 ~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.. ...+.+ ..+|+||++.
T Consensus       186 ~~l~~-~~~~~p-~ivv~NK~Dl  206 (341)
T 2p67_A          186 QGIKK-GLMEVA-DLIVINKDDG  206 (341)
T ss_dssp             CCCCH-HHHHHC-SEEEECCCCT
T ss_pred             HHHHH-hhhccc-CEEEEECCCC
Confidence            00100 001223 4689999883

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.53  E-value=1.9e-06  Score=79.56  Aligned_cols=167  Identities=14%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+|+++ |.+|+||||+...||..+.  ..+++|++.+.|.........+..           |   ....++.+++..
T Consensus       293 GeVI~LV-GpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~-----------~---~~r~~I~vV~Q~  355 (503)
T 2yhs_A          293 PFVILMV-GVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQV-----------W---GQRNNIPVIAQH  355 (503)
T ss_dssp             TEEEEEE-CCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHH-----------H---HHHHTCCEECCS
T ss_pred             CeEEEEE-CCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHH-----------H---HHhcCceEEecc
Confidence            3455555 7799999999999999999  789999999998753110000000           0   000122222211


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCCc
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTPQ  197 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~~  197 (294)
                      ..   ..         ....+.+.+..... .+||+||||+++......  +..+..+.       ....+.++++.++.
T Consensus       356 ~~---~~---------p~~tV~e~l~~a~~-~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat  422 (503)
T 2yhs_A          356 TG---AD---------SASVIFDAIQAAKA-RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS  422 (503)
T ss_dssp             TT---CC---------HHHHHHHHHHHHHH-TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred             cC---cC---------HHHHHHHHHHHHHh-cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence            10   00         01123333333322 339999999997653221  11111110       11245677777655


Q ss_pred             hhhHHHHHHHHHHHH-hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        198 EVSLLDVRKEIDFCR-KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..  .++...++.+. ..++  -++|+++.+..            .....+-.+...+++|+.
T Consensus       423 tG--q~al~~ak~f~~~~~i--tgvIlTKLD~t------------akgG~~lsi~~~~~~PI~  469 (503)
T 2yhs_A          423 TG--QNAVSQAKLFHEAVGL--TGITLTKLDGT------------AKGGVIFSVADQFGIPIR  469 (503)
T ss_dssp             GT--HHHHHHHHHHHHHTCC--SEEEEECGGGC------------SCCTHHHHHHHHHCCCEE
T ss_pred             cc--HHHHHHHHHHHhhcCC--CEEEEEcCCCc------------ccccHHHHHHHHHCCCEE
Confidence            43  22223344443 3344  48999998731            112345566666777776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.43  E-value=2.4e-06  Score=75.31  Aligned_cols=167  Identities=16%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+++++ |.+|+||||++..||..+.  ..+++|++++.|.........+...              ...-++.+++..
T Consensus       129 g~vi~lv-G~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~--------------~~~~gv~~v~q~  191 (328)
T 3e70_C          129 PYVIMFV-GFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEH--------------AKRIGVKVIKHS  191 (328)
T ss_dssp             SEEEEEE-CCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHH--------------HHHTTCEEECCC
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHH--------------HHHcCceEEecc
Confidence            4455555 6699999999999999999  8899999999998654322211100              001122232221


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD  203 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~  203 (294)
                      ...   .         ......+.+......+ ||++++|+++...  ...+..+..+. ....|..+++.++...  ..
T Consensus       192 ~~~---~---------p~~~v~e~l~~~~~~~-~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~  256 (328)
T 3e70_C          192 YGA---D---------PAAVAYDAIQHAKARG-IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NA  256 (328)
T ss_dssp             TTC---C---------HHHHHHHHHHHHHHHT-CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--TH
T ss_pred             ccC---C---------HHHHHHHHHHHHHhcc-chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HH
Confidence            100   0         0012222222221123 9999999996542  22222211110 0257888888775443  34


Q ss_pred             HHHHHHHHH-hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        204 VRKEIDFCR-KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       204 ~~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +...++.+. ..++  .++|+++.+..            .....+-.+....+.|+.
T Consensus       257 ~~~~~~~~~~~~~i--t~iilTKlD~~------------a~~G~~l~~~~~~~~pi~  299 (328)
T 3e70_C          257 IVEQARQFNEAVKI--DGIILTKLDAD------------ARGGAALSISYVIDAPIL  299 (328)
T ss_dssp             HHHHHHHHHHHSCC--CEEEEECGGGC------------SCCHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHhcCC--CEEEEeCcCCc------------cchhHHHHHHHHHCCCEE
Confidence            444444444 3343  48999998731            112344566667787776

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.23  E-value=4.3e-05  Score=66.63  Aligned_cols=41  Identities=34%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.+++++ |.+|+||||++..||..+.  ..+++|++.+.|...
T Consensus       102 g~vi~lv-G~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          102 GRVVLVV-GVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSEEEEE-CSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSS
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCC
Confidence            5567777 6799999999999999999  889999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.11  E-value=3.4e-05  Score=68.61  Aligned_cols=42  Identities=31%  Similarity=0.427  Sum_probs=34.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP   91 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~   91 (294)
                      ..+..+.|..|+||||+...|+..+.  ..+.+|.++..|++..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC---
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecCCCC
Confidence            34555569999999999999999998  7899999999998753

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.86  E-value=9.8e-05  Score=71.66  Aligned_cols=86  Identities=13%  Similarity=-0.010  Sum_probs=57.9

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE  238 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~  238 (294)
                      .|++.|+|+|+.... ...+...+  ..+|.+|+|+++.......+...+..+...+++. .+++||+|..      .  
T Consensus        81 ~~~i~liDTPG~~df-~~~~~~~l--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~-ilviNKiD~~------~--  148 (704)
T 2rdo_7           81 PHRINIIDTPGHVDF-TIEVERSM--RVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPR-IAFVNKMDRM------G--  148 (704)
T ss_pred             ceeEEEEeCCCccch-HHHHHHHH--HHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE-EEEEeCCCcc------c--
Confidence            389999999976531 22233344  5799999999988766666677777777778874 4789999842      1  


Q ss_pred             cCCCCchhHHHHHhhcCCce
Q psy11347        239 IFPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       239 i~~~~~~~~~~~~~~~g~~~  258 (294)
                        .+.....+++.+.++...
T Consensus       149 --~~~~~~~~~l~~~l~~~~  166 (704)
T 2rdo_7          149 --ANFLKVVNQIKTRLGANP  166 (704)
T ss_pred             --ccHHHHHHHHHHHhCCCc
Confidence              123445666666666543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.74  E-value=0.00076  Score=59.97  Aligned_cols=41  Identities=29%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.+++++ |.+|+||||++..||..+.  ..+++|++.+.|...
T Consensus       157 g~vi~lv-G~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          157 PAVIMIV-GVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SEEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred             CeEEEEE-cCCCChHHHHHHHHHhhcc--ccCCEEEEecccccc
Confidence            4455555 6799999999999999999  789999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.73  E-value=0.00073  Score=58.69  Aligned_cols=41  Identities=29%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.+++++ |.+|+||||+...||..+.  ..+++|++.+.|...
T Consensus       100 g~vi~lv-G~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A          100 PAVIMIV-GVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR  140 (302)
T ss_dssp             CEEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred             CcEEEEE-cCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccc
Confidence            4455555 6799999999999999999  789999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.73  E-value=9.8e-05  Score=65.76  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|...+.   -....+.++.|++|+||||++.++|..++  ..|.+|+++|++..
T Consensus        45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s  102 (356)
T 1u94_A           45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHA  102 (356)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence            356677777775   23455677778999999999999999999  78999999999653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.66  E-value=7.5e-05  Score=70.04  Aligned_cols=86  Identities=16%  Similarity=0.016  Sum_probs=57.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+..... ..+...+  ..+|.+|+|++...........++..+...+++ +.+++|++|..      .   
T Consensus        82 ~~i~liDTPG~~df~-~~~~~~l--~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~------~---  148 (529)
T 2h5e_A           82 CLVNLLDTPGHEDFS-EDTYRTL--TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRD------I---  148 (529)
T ss_dssp             EEEEEECCCCSTTCC-HHHHHGG--GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSC------C---
T ss_pred             eEEEEEECCCChhHH-HHHHHHH--HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCc------c---
Confidence            899999999654311 2233344  579999999988765555667777777777787 57899999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ....+..+++.+.++.+..
T Consensus       149 -~~~~~~~~~i~~~l~~~~~  167 (529)
T 2h5e_A          149 -RDPMELLDEVENELKIGCA  167 (529)
T ss_dssp             -SCHHHHHHHHHHHHCCEEE
T ss_pred             -ccHHHHHHHHHHHhCCCcc
Confidence             1123456677777776544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.64  E-value=0.00025  Score=63.34  Aligned_cols=55  Identities=13%  Similarity=0.168  Sum_probs=43.4

Q ss_pred             CcChHHHHhhhc--c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS--N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~--~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|...+.  . ....+.++.+..|+||||++.++|..++  ..|.+|+++|++..
T Consensus        56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s  113 (366)
T 1xp8_A           56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHA  113 (366)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence            356777887776  2 2334555578999999999999999999  78999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.62  E-value=0.00021  Score=58.87  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             ChHHHHhhhc-c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         35 GIELVKSHLS-N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        35 ~~~~i~~~~~-~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .++.+...+. . ....+..+.|.+|+||||++..++..+.  ..+.+|++++.+..
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~   62 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES   62 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC
Confidence            3555665553 2 2344566679999999999999999888  67889999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.60  E-value=0.00038  Score=61.51  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+.|..|+||||+...|+..+.  ..+.+|.+++.|+..
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSS   95 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcc
Confidence            444555669999999999999999999  789999999998853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.53  E-value=9.9e-05  Score=58.49  Aligned_cols=42  Identities=19%  Similarity=0.151  Sum_probs=35.0

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +++++.|++ ..|+||||++..|+..|.  .+|++|.++..|+..
T Consensus         3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~--~~g~~v~~ik~~~~~   44 (169)
T 1xjc_A            3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV--REGWRVGTVKHHGHG   44 (169)
T ss_dssp             -CCEEEEEC-CTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC--
T ss_pred             CCEEEEEEC-CCCCCHHHHHHHHHHhhH--hcCCeeeEEEeCCCC
Confidence            467777776 679999999999999999  789999999998753

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.46  E-value=0.00021  Score=57.90  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...|.+..|+| .||||.|..+|....  ..|+||+++-+..
T Consensus        28 ~g~i~v~tG~G-kGKTTaA~GlalRA~--g~G~rV~~vQF~K   66 (196)
T 1g5t_A           28 RGIIIVFTGNG-KGKTTAAFGTAARAV--GHGKNVGVVQFIK   66 (196)
T ss_dssp             CCCEEEEESSS-SCHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred             CceEEEECCCC-CCHHHHHHHHHHHHH--HCCCeEEEEEeeC
Confidence            34566665666 999999999999999  8999999997655

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.45  E-value=0.00045  Score=61.29  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|...+. .  ....+..+.|.+|+||||++.+++..+.  ..|.+|+++|++..
T Consensus        43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA  100 (349)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence            356677787776 2  2445666668999999999999999999  78999999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.43  E-value=0.0017  Score=57.66  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEe
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLD   85 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD   85 (294)
                      .+.....-+..+.|..|+||||+...|+..+.  .. +.+++.++
T Consensus       117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~e  159 (356)
T 3jvv_A          117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIE  159 (356)
T ss_dssp             HHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEE
T ss_pred             HHHhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEcc
Confidence            33333444777779999999999999999998  54 56665554

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.39  E-value=0.0013  Score=59.50  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus        75 ~~~~iiDtpG~~~-f~~~~~~~~--~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl  140 (405)
T 2c78_A           75 RHYSHVDCPGHAD-YIKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM  140 (405)
T ss_dssp             CEEEEEECCCSGG-GHHHHHHHH--TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHH-HHHHHHHHH--HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccc
Confidence            7899999996433 223334444  68999999998877666667777888888888866789999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.37  E-value=0.00074  Score=53.72  Aligned_cols=42  Identities=17%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |+++++++ |..|+||||++..|...+.  ..|++|..+..++..
T Consensus         5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~--~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            5 MIPLLAFA-AWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCCEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-
T ss_pred             cceEEEEE-eCCCCCHHHHHHHHHHhcc--ccCCceeEEeeCCCc
Confidence            45666555 5889999999999999999  789999999887643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.37  E-value=0.0018  Score=59.96  Aligned_cols=66  Identities=11%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-------HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-------LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-------~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. .....+...+  ..+|.+|++++.+...       .......+..+...+.+.+.+++|++|.
T Consensus       111 ~~~~iiDTPG~~-~f~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl  183 (483)
T 3p26_A          111 ANFTIVDAPGHR-DFVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN  183 (483)
T ss_dssp             CEEEEECCCCCG-GGHHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcH-HHHHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence            889999999643 3333344444  6899999999887642       2355666666777787767799999984

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.35  E-value=0.00017  Score=57.83  Aligned_cols=45  Identities=38%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +...+...+.++.|..|+||||++..||..+.  ..|.+|.++|.|.
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~--~~~~~~~~~~~d~   51 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ--KEGYRVEVLDGDW   51 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEeeHHH
Confidence            34444556666779999999999999999999  7899999998763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.32  E-value=0.0035  Score=49.70  Aligned_cols=87  Identities=18%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +++.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|++|..     
T Consensus        69 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~-----  139 (190)
T 3con_A           69 CLLDILDTAGQEEYSA-MRDQYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLP-----  139 (190)
T ss_dssp             EEEEEEECCC------------C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS-----
T ss_pred             EEEEEEECCChHHHHH-HHHHhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCC-----
Confidence            7899999996432111 111222  57888888876654 5666666666666542    344 66999999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ...   ...+..+++.+..+++++
T Consensus       140 -~~~---~~~~~~~~~~~~~~~~~~  160 (190)
T 3con_A          140 -TRT---VDTKQAHELAKSYGIPFI  160 (190)
T ss_dssp             -CCC---SCHHHHHHHHHHHTCCEE
T ss_pred             -ccc---CCHHHHHHHHHHcCCeEE
Confidence             111   123456677777777655

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.31  E-value=0.0056  Score=46.84  Aligned_cols=87  Identities=17%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +++.|+|+|+....... ....+  ..+|.++++.+.+ ..++..+..++..+...    +.+ +.+|.|++|..     
T Consensus        51 ~~~~~~D~~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~-----  121 (166)
T 2ce2_X           51 CLLDILDTAGQEEYSAM-RDQYM--RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLA-----  121 (166)
T ss_dssp             EEEEEEECCCCSSCCHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS-----
T ss_pred             EEEEEEECCCchhhhHH-HHHhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhh-----
Confidence            78999999975432111 11122  3578888888765 35666666666666543    344 66999999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ...   ......+++.+..+++++
T Consensus       122 -~~~---~~~~~~~~~~~~~~~~~~  142 (166)
T 2ce2_X          122 -ART---VESRQAQDLARSYGIPYI  142 (166)
T ss_dssp             -CCC---SCHHHHHHHHHHHTCCEE
T ss_pred             -hcc---cCHHHHHHHHHHcCCeEE
Confidence             111   123456677777777655

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.29  E-value=0.00018  Score=67.51  Aligned_cols=86  Identities=16%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+.... ...+...+  ..+|.+|+|++...........++..+...+++ +.+|+|++|..          
T Consensus        82 ~~i~liDTPG~~df-~~~~~~~l--~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~----------  147 (528)
T 3tr5_A           82 YLINLLDTPGHADF-TEDTYRTL--TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRD----------  147 (528)
T ss_dssp             EEEEEECCCCSTTC-CHHHHHGG--GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSC----------
T ss_pred             EEEEEEECCCchhH-HHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCc----------
Confidence            88999999965431 22333444  579999999998876556667777888888887 45889999831          


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .....+.++++.+.++....
T Consensus       148 ~~~~~~~l~ei~~~l~~~~~  167 (528)
T 3tr5_A          148 TRPSIELLDEIESILRIHCA  167 (528)
T ss_dssp             CSCHHHHHHHHHHHHCCEEE
T ss_pred             cccHHHHHHHHHHhhCCCce
Confidence            11223456777777776544

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=97.28  E-value=0.00082  Score=59.33  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=84.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      ..++|.++++-.++||||++..|...+.  ++|.++.++-...++    .+.+..        ..+            +.
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~--~~G~~v~~v~tgqtg----~li~~~--------~gv------------~~  221 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERAL--EKGIKAGFLATGQTG----ILIGAD--------AGY------------VI  221 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEEECSHHH----HHTTCS--------EEC------------CG
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHH--hcCCeEEEEccCcee----eeeccC--------CCC------------CC
Confidence            4789999999999999999999999999  899999887643211    111110        000            00


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH--HHHHhhcCCCcEEEEecCCc------
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS--LVQYLKGLPDIGAIVVTTPQ------  197 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~--~~~~l~~~~ad~vliv~~~~------  197 (294)
                      .    ...      .+........++..+. .++||++|+...+++..+...  .+..+.....|.+|+.-.+.      
T Consensus       222 D----~~~------~~~~ag~~e~~i~~~~-~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~  290 (350)
T 2g0t_A          222 D----AVP------ADFVSGVVEKAVLKLE-KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFES  290 (350)
T ss_dssp             G----GSB------GGGHHHHHHHHHHHHH-HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTT
T ss_pred             C----cee------cchhhHHHHhhHHHhh-hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccC
Confidence            0    000      1111112223333332 134999999999776433322  22333334788777755443      


Q ss_pred             -----h-hhHHHHHHHHHHHHhcCCCeeEEE-ecc
Q psy11347        198 -----E-VSLLDVRKEIDFCRKVNIPIIGVV-ENM  225 (294)
Q Consensus       198 -----~-~s~~~~~~~l~~l~~~~~~~~~vv-vN~  225 (294)
                           . .+++....+++.+.  +.+++|++ +|.
T Consensus       291 ~~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~  323 (350)
T 2g0t_A          291 FPEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG  323 (350)
T ss_dssp             CTTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred             CCcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence                 2 46666666666655  67899999 987

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.26  E-value=0.002  Score=53.31  Aligned_cols=38  Identities=16%  Similarity=-0.023  Sum_probs=33.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...+.++.|..|+||||.+..++..+.  .+|.+|+++-.
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~   48 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKP   48 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEe
Confidence            455788889999999999999999999  88999999943

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.24  E-value=0.0017  Score=58.66  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. .....+...+  ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus        66 ~~~~iiDtpG~~-~f~~~~~~~~--~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl  131 (397)
T 1d2e_A           66 RHYAHTDCPGHA-DYVKNMITGT--APLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA  131 (397)
T ss_dssp             CEEEEEECSSHH-HHHHHHHHTS--SCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             eEEEEEECCChH-HHHHHHHhhH--hhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence            789999999642 2222233333  67999999998877655666677777777888866789999984

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.23  E-value=0.0065  Score=48.35  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE  238 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~  238 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .+......++..+.......+.+|+|++|.      ....
T Consensus        93 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~------~~~~  163 (208)
T 3clv_A           93 IKFDIWDTAGQERYAS-IVPLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK------NKFQ  163 (208)
T ss_dssp             EEEEEEECTTGGGCTT-THHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC------C-CC
T ss_pred             eEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc------cccc
Confidence            7899999996321111 112222  57899999998765 566677777777765333557799999872      1111


Q ss_pred             cCCCCchhHHHHHhhcCCcee
Q psy11347        239 IFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       239 i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .   ..+.+.++.+..+++++
T Consensus       164 ~---~~~~~~~~~~~~~~~~~  181 (208)
T 3clv_A          164 V---DILEVQKYAQDNNLLFI  181 (208)
T ss_dssp             S---CHHHHHHHHHHTTCEEE
T ss_pred             C---CHHHHHHHHHHcCCcEE
Confidence            1   23456667766676554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.22  E-value=0.0033  Score=53.37  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=32.8

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecC
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLD   87 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D   87 (294)
                      ++.....+..+.|.+|+||||+...|+..+.  .. ..+|.+.+-+
T Consensus        20 i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~   63 (261)
T 2eyu_A           20 LCHRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDP   63 (261)
T ss_dssp             GGGCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESS
T ss_pred             HhhCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCc
Confidence            3344555666679999999999999999998  54 6788777654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.21  E-value=0.0014  Score=63.49  Aligned_cols=85  Identities=16%  Similarity=-0.013  Sum_probs=56.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+... ........+  ..+|.+|+|++............+..+...+++. .+++|++|..          
T Consensus        77 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~----------  142 (691)
T 1dar_A           77 HRINIIDTPGHVD-FTIEVERSM--RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDKT----------  142 (691)
T ss_dssp             EEEEEECCCSSTT-CHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECTTST----------
T ss_pred             eEEEEEECcCccc-hHHHHHHHH--HHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCcc----------
Confidence            8999999997543 122233333  4689999999887755555666677777777774 4889999842          


Q ss_pred             CCCCchhHHHHHhhcCCce
Q psy11347        240 FPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~  258 (294)
                      ..+.....+++.+.++...
T Consensus       143 ~~~~~~~~~~l~~~l~~~~  161 (691)
T 1dar_A          143 GADLWLVIRTMQERLGARP  161 (691)
T ss_dssp             TCCHHHHHHHHHHTTCCCE
T ss_pred             cCCHHHHHHHHHHHhCCCc
Confidence            1123445667776666543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.20  E-value=0.0016  Score=55.16  Aligned_cols=89  Identities=19%  Similarity=0.009  Sum_probs=54.1

Q ss_pred             ccEEEEcCCCCCChHH---------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347        160 LEYLLIDTPPGTSDEH---------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC  230 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~---------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~  230 (294)
                      +++.|+|+|+......         ......+....+|.+|+|++.+.  ......+..++.+.+.+ +.+|+||+|.. 
T Consensus        48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~-  123 (256)
T 3iby_A           48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIA-  123 (256)
T ss_dssp             EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHH-
T ss_pred             eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcC-
Confidence            6789999996443211         11112222257999999998766  44555566677777777 56889999842 


Q ss_pred             CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347        231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG  260 (294)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~  260 (294)
                          ....+    ....+.+.+.+|.+++.
T Consensus       124 ----~~~~~----~~~~~~l~~~lg~~vi~  145 (256)
T 3iby_A          124 ----EHRGI----SIDTEKLESLLGCSVIP  145 (256)
T ss_dssp             ----HHTTC----EECHHHHHHHHCSCEEE
T ss_pred             ----CcCCc----HHHHHHHHHHcCCCEEE
Confidence                11111    12355677777887764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.18  E-value=0.001  Score=64.49  Aligned_cols=84  Identities=15%  Similarity=0.032  Sum_probs=54.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+.... ...+...+  ..+|.+|+|++............+..+...+.+. .+|+|++|..      .   
T Consensus        75 ~~i~liDTPG~~df-~~~~~~~l--~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~-ilviNK~Dl~------~---  141 (693)
T 2xex_A           75 HRVNIIDTPGHVDF-TVEVERSL--RVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR-IVFVNKMDKL------G---  141 (693)
T ss_dssp             EEEEEECCCCCSSC-CHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTST------T---
T ss_pred             eeEEEEECcCCcch-HHHHHHHH--HHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCE-EEEEECCCcc------c---
Confidence            89999999975431 12233333  4689999999887644445556667777777774 5889999842      1   


Q ss_pred             CCCCchhHHHHHhhcCCc
Q psy11347        240 FPKDSGGAEKMCAELSVP  257 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~  257 (294)
                       .+....++++.+.++..
T Consensus       142 -~~~~~~~~~l~~~l~~~  158 (693)
T 2xex_A          142 -ANFEYSVSTLHDRLQAN  158 (693)
T ss_dssp             -CCHHHHHHHHHHHHCCC
T ss_pred             -cchHHHHHHHHHHhCCC
Confidence             12334556666666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.16  E-value=0.002  Score=49.75  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+.++.|..|+||||++..++..+.  ..|.++.+++..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~   73 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAA   73 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHH
Confidence            344555679999999999999999999  678888888764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.15  E-value=0.0045  Score=49.94  Aligned_cols=36  Identities=22%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ..+.++.|.-|+||||.+..++..+.  .+|++|+++-
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k   43 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFK   43 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence            34777778899999999999999999  8999999995

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.14  E-value=0.0047  Score=54.79  Aligned_cols=55  Identities=11%  Similarity=0.119  Sum_probs=44.4

Q ss_pred             CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ....+.|...+. .  ....+..+.|..|+||||++..++..++  ..|.+|+++|....
T Consensus        43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s  100 (356)
T 3hr8_A           43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHA  100 (356)
T ss_dssp             CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence            466788888776 2  2455666668899999999999999999  78999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.14  E-value=0.00018  Score=60.40  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~   71 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT   71 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence            3444558999999999999999988  67778877655543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.07  E-value=0.0015  Score=59.02  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|++++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus        75 ~~~~iiDtPGh~~-~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGHEV-LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCCGG-GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcHH-HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence            6799999996432 223344444  6899999999887753 7777788888887777667799999984

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.02  E-value=0.00012  Score=65.22  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~   94 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTT   94 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCc
Confidence            3444558899999999999999998  777888887776654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.01  E-value=0.013  Score=51.08  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             cChHHHHhhhc----c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC--CCcEEEEecCCC
Q psy11347         34 PGIELVKSHLS----N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE--SVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~----~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~--g~~VlliD~D~~   89 (294)
                      ..++.|...+.    .  ... +..+.|..|+||||++..++..++  ..  |.+|++||..-.
T Consensus         9 TGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s   69 (333)
T 3io5_A            9 TKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFG   69 (333)
T ss_dssp             CSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCC
T ss_pred             CCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccch
Confidence            44566666666    2  234 678889999999999999999988  54  889999998643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.99  E-value=0.0013  Score=62.98  Aligned_cols=85  Identities=21%  Similarity=0.107  Sum_probs=66.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |.+-|||||+..+ ....+...+  ..+|.+|+|++....-...+..+++.+.+.+++.+ +++|++|..          
T Consensus        67 ~~iNlIDTPGH~D-F~~Ev~raL--~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~----------  132 (638)
T 3j25_A           67 TKVNIIDTPGHMD-FLAEVYRSL--SVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQN----------  132 (638)
T ss_dssp             CBCCCEECCCSSS-THHHHHHHH--TTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSS----------
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccc----------
Confidence            8899999997664 344555556  78999999999988877889999999999999964 789999842          


Q ss_pred             CCCCchhHHHHHhhcCCce
Q psy11347        240 FPKDSGGAEKMCAELSVPF  258 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~  258 (294)
                      ..+.....+++.+.++...
T Consensus       133 ~a~~~~~~~~i~~~l~~~~  151 (638)
T 3j25_A          133 GIDLSTVYQDIKEKLSAEI  151 (638)
T ss_dssp             SCCSHHHHHHHHHTTCCCC
T ss_pred             cCCHHHHHHHHHHHhCCCc
Confidence            3345567788888777544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.98  E-value=0.011  Score=46.26  Aligned_cols=89  Identities=13%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        61 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-----~~  132 (181)
T 2efe_B           61 VKFEIWDTAGQERYHS-LAPMYY--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-----DA  132 (181)
T ss_dssp             EEEEEEECCCSGGGGG-GTHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred             EEEEEEeCCCChhhhh-hhHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----cc
Confidence            7899999996432111 111222  57899999987754 56677777777776543  22467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+++++
T Consensus       133 ~~~---~~~~~~~~~~~~~~~~~  152 (181)
T 2efe_B          133 RKV---TAEDAQTYAQENGLFFM  152 (181)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccC---CHHHHHHHHHHcCCEEE
Confidence            121   23455667666776655

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.96  E-value=0.011  Score=46.95  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        72 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~  143 (192)
T 2fg5_A           72 HKFLIWDTAGQERFHS-LAPMYY--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-----DI  143 (192)
T ss_dssp             EEEEEEEECCSGGGGG-GTHHHH--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEcCCCchhhHh-hhHHhh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cc
Confidence            7899999996432111 111222  57899999887654 56777777777776543  23467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+.+++
T Consensus       144 ~~v---~~~~~~~~~~~~~~~~~  163 (192)
T 2fg5_A          144 REV---PLKDAKEYAESIGAIVV  163 (192)
T ss_dssp             CCS---CHHHHHHHHHTTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   23456667766776554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.96  E-value=0.0012  Score=53.97  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+.|+++ |.+|+||||++..|+..+.  .. ++|.+++.|+.
T Consensus        30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~--~~-~~~~~i~~d~~   68 (221)
T 2wsm_A           30 TVAVNIM-GAIGSGKTLLIERTIERIG--NE-VKIGAMLGDVV   68 (221)
T ss_dssp             CEEEEEE-ECTTSCHHHHHHHHHHHHT--TT-SCEEEEECSCC
T ss_pred             ceEEEEE-cCCCCCHHHHHHHHHHHhc--cC-CeEEEEecCCC
Confidence            3445444 7999999999999999988  55 89999999885

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.93  E-value=0.0018  Score=51.91  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ..+.++.|..|+||||++..++..+.  ..|++|+++-.
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~--~~g~~v~~~~~   39 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYK--LGKKKVAVFKP   39 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH--HTTCEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEee
Confidence            34667778889999999999999988  78999998744

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.93  E-value=0.028  Score=44.34  Aligned_cols=86  Identities=13%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-------hhHHHHHHHHHHHHh--cCCCeeEEEeccccccC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-------VSLLDVRKEIDFCRK--VNIPIIGVVENMATFVC  230 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-------~s~~~~~~~l~~l~~--~~~~~~~vvvN~~~~~~  230 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|++.+.+.       .++..+..++..++.  .+. .+.+|.|+.|.. 
T Consensus        74 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~-piilv~NK~Dl~-  148 (198)
T 3t1o_A           74 TRFHLYTVPGQVFYNAS-RKLIL--RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDV-PIVIQVNKRDLP-  148 (198)
T ss_dssp             EEEEEEECCSCCSCSHH-HHHHT--TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSS-CEEEEEECTTST-
T ss_pred             eEEEEEeCCChHHHHHH-HHHHH--hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCC-CEEEEEEchhcc-
Confidence            78999999964322111 12223  68999999998863       333444443333321  233 366889999842 


Q ss_pred             CCCCCCCccCCCCchhHHHHHhhcCC-cee
Q psy11347        231 PKCTKPSEIFPKDSGGAEKMCAELSV-PFL  259 (294)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~~~~g~-~~l  259 (294)
                            ..   ...+.++++++..+. +++
T Consensus       149 ------~~---~~~~~~~~~~~~~~~~~~~  169 (198)
T 3t1o_A          149 ------DA---LPVEMVRAVVDPEGKFPVL  169 (198)
T ss_dssp             ------TC---CCHHHHHHHHCTTCCSCEE
T ss_pred             ------cc---cCHHHHHHHHHhcCCceEE
Confidence                  11   223455666666665 444

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.93  E-value=0.0048  Score=55.11  Aligned_cols=39  Identities=21%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDL   86 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~   86 (294)
                      ....+..+.|..|+||||+...|+..+.  .. ..+|+.++-
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~  173 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIED  173 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEES
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecc
Confidence            3445566668999999999999999998  55 678877774

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.92  E-value=0.004  Score=56.96  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++|+|+|+... ....+...+  ..+|.+|++++.+....       ..+...+..+...+++.+.+++|++|.
T Consensus        95 ~~~~iiDTPGh~~-f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           95 KHFTILDAPGHKS-FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD  167 (439)
T ss_pred             eEEEEEECCChHH-HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence            7899999996432 222333333  57999999998876543       356667777777888867789999983

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.92  E-value=0.00017  Score=61.25  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~   71 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI   71 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            3444559999999999999999998  7777887765554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.88  E-value=0.017  Score=44.99  Aligned_cols=89  Identities=17%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKC  233 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~  233 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|+|.+.+. .++..+..++..+...     +.+.+.+|.|+.|..    
T Consensus        56 ~~~~~~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~----  128 (178)
T 2hxs_A           56 VTLQIWDIGGQTIGGKM-LDKYI--YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE----  128 (178)
T ss_dssp             EEEEEEECTTCCTTCTT-HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG----
T ss_pred             EEEEEEECCCCccccch-hhHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc----
Confidence            78999999964321111 11223  57999999998754 5666666666666542     455567899999842    


Q ss_pred             CCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        234 TKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ....+   ..+..+++.+..+++++
T Consensus       129 -~~~~~---~~~~~~~~~~~~~~~~~  150 (178)
T 2hxs_A          129 -HMRTI---KPEKHLRFCQENGFSSH  150 (178)
T ss_dssp             -GGCSS---CHHHHHHHHHHHTCEEE
T ss_pred             -ccccc---CHHHHHHHHHHcCCcEE
Confidence             11111   13345666666676554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.88  E-value=0.011  Score=45.52  Aligned_cols=89  Identities=15%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCC--eeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIP--IIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .+......++..+.....+  .+.+|.|+.|..     ..
T Consensus        55 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-----~~  126 (170)
T 1z0j_A           55 HKFLIWDTAGLERFRA-LAPMYY--RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-----DV  126 (170)
T ss_dssp             EEEEEEEECCSGGGGG-GTHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-----GG
T ss_pred             EEEEEEcCCCchhhhc-ccHhhC--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-----cc
Confidence            6789999996422111 111222  57898888887654 5667777777777655332  466778998842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .++   ..+..+.+.+..+.+++
T Consensus       127 ~~v---~~~~~~~~~~~~~~~~~  146 (170)
T 1z0j_A          127 REV---MERDAKDYADSIHAIFV  146 (170)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   23345566666665544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.87  E-value=0.00016  Score=61.64  Aligned_cols=38  Identities=26%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i   88 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL   88 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence            3445558999999999999999988  6777887755444

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.85  E-value=0.021  Score=43.81  Aligned_cols=92  Identities=17%  Similarity=0.148  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        52 ~~~~~~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~  123 (170)
T 1ek0_A           52 VKFEIWDTAGQERFAS-LAPXYY--RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL-----QE  123 (170)
T ss_dssp             EEEEEEEECCSGGGGG-GHHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GS
T ss_pred             EEEEEEECCCChhhhh-hhhhhh--ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cc
Confidence            6789999996432111 122223  57899999887654 56777777776665432  22466888999853     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .....-..+..+++.+..+.+++
T Consensus       124 ~~~~~v~~~~~~~~~~~~~~~~~  146 (170)
T 1ek0_A          124 GGERKVAREEGEKLAEEKGLLFF  146 (170)
T ss_dssp             SCCCCSCHHHHHHHHHHHTCEEE
T ss_pred             ccccCCCHHHHHHHHHHcCCEEE
Confidence            11111123344556666666544

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.82  E-value=0.0046  Score=60.05  Aligned_cols=87  Identities=17%  Similarity=0.012  Sum_probs=65.9

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE  238 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~  238 (294)
                      +|-+=|||||+..+ ...++..++  ..+|.+|+|++....-...+..+++++.+.+++. -+++|++|.      .   
T Consensus        84 ~~~iNlIDTPGHvD-F~~Ev~~aL--r~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr------~---  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVD-FTIEVERSL--RVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDR------Q---  150 (709)
T ss_dssp             CEEEEEECCCSCTT-CHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSS------T---
T ss_pred             CEEEEEEeCCCCcc-cHHHHHHHH--HHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEccccc------c---
Confidence            38889999997654 334444555  5799999999998888889999999999999995 588999983      2   


Q ss_pred             cCCCCchhHHHHHhhcCCcee
Q psy11347        239 IFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       239 i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ..+....++++.+.++....
T Consensus       151 -~a~~~~~~~ei~~~l~~~~~  170 (709)
T 4fn5_A          151 -GANFLRVVEQIKKRLGHTPV  170 (709)
T ss_dssp             -TCCHHHHHHHHHHHHCSCEE
T ss_pred             -CccHHHHHHHhhhhccccee
Confidence             33345567777777775444

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.81  E-value=0.00013  Score=61.83  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~   79 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV   79 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence            3444558999999999999999988  6777887765554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.81  E-value=0.00032  Score=58.71  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~   71 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTND   71 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence            33445558999999999999999998  777788886666543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.81  E-value=0.006  Score=48.98  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+ ..++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        72 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  142 (201)
T 3oes_A           72 FHLHLVDTAGQDEYSIL-PYSFI--IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLS-----  142 (201)
T ss_dssp             EEEEEEEECCCCTTCCC-CGGGT--TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCG-----
T ss_pred             EEEEEEECCCccchHHH-HHHHH--hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCc-----
Confidence            78899999963321100 11122  5789888888765 46777777777777544    344 56889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   .....+++.+..+.+++
T Consensus       143 ~~~~v---~~~~~~~~~~~~~~~~~  164 (201)
T 3oes_A          143 PEREV---QAVEGKKLAESWGATFM  164 (201)
T ss_dssp             GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccccc---CHHHHHHHHHHhCCeEE
Confidence            11111   12345666667777655

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.80  E-value=0.023  Score=44.75  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=54.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+.... .......+  ..+|.+|++.+.+ ..++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        70 ~~~~l~Dt~G~~~~-~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  140 (195)
T 3bc1_A           70 IHLQLWDTAGLERF-RSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLE-----  140 (195)
T ss_dssp             EEEEEEEECCSGGG-HHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCG-----
T ss_pred             EEEEEEeCCCcHHH-HHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence            78999999964322 11222223  5799999998865 46676677777776542    334 67899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ..+..+++.+..+++++
T Consensus       141 ~~~~~---~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A          141 DQRAV---KEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GGCCS---CHHHHHHHHHHHTCCEE
T ss_pred             ccccc---CHHHHHHHHHHcCCCEE
Confidence            11111   23456667766776655

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.80  E-value=0.0011  Score=52.62  Aligned_cols=41  Identities=15%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      |++++++++ .+|+||||++..|+..+.  ..|+++..|-.|..
T Consensus         1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~--~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            1 MSLILSIVG-TSDSGKTTLITRMMPILR--ERGLRVAVVKRHAH   41 (171)
T ss_dssp             --CEEEEEE-SCHHHHHHHHHHHHHHHH--HTTCCEEEEEC---
T ss_pred             CceEEEEEC-CCCCCHHHHHHHHHHHhh--hcCCceEEEEEcCc
Confidence            467788886 889999999999999999  78888877766643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.79  E-value=0.016  Score=45.00  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .+......++..+....  ...+.+|.|+.|..     ..
T Consensus        64 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~  135 (179)
T 1z0f_A           64 IKLQIWDTAGQERFRA-VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQ  135 (179)
T ss_dssp             EEEEEEECTTGGGTCH-HHHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEECCCChHhhh-hHHHHh--ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cc
Confidence            7899999996432111 122223  47898998887654 56666666666665432  22467889998842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+.+++
T Consensus       136 ~~~---~~~~~~~~~~~~~~~~~  155 (179)
T 1z0f_A          136 RDV---TYEEAKQFAEENGLLFL  155 (179)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   23445666666676554

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.77  E-value=0.0074  Score=46.43  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+...  +.+ +.+|.|+.|..     ..
T Consensus        54 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~-----~~  124 (168)
T 1z2a_A           54 VRLMLWDTAGQEEFDA-ITKAYY--RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLL-----DD  124 (168)
T ss_dssp             EEEEEECCTTGGGTTC-CCHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGG-----GG
T ss_pred             EEEEEEcCCCcHhHHH-HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccC-----cc
Confidence            7899999996321100 011122  57899998887754 5566666666666443  444 66899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+.+++
T Consensus       125 ~~~---~~~~~~~~~~~~~~~~~  144 (168)
T 1z2a_A          125 SCI---KNEEAEGLAKRLKLRFY  144 (168)
T ss_dssp             CSS---CHHHHHHHHHHHTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   23445666666776554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.75  E-value=0.00046  Score=61.41  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.|..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~   68 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN   68 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence            3455559999999999999999998  77778887665543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.75  E-value=0.00039  Score=62.22  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.|..
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~   68 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN   68 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence            3455558999999999999999998  77788887665553

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.75  E-value=0.0088  Score=54.55  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++.+..++.       .+...+..+...+++.+.+++|++|.
T Consensus        84 ~~~~iiDtpG~~~-f~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl  156 (435)
T 1jny_A           84 YFFTIIDAPGHRD-FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL  156 (435)
T ss_dssp             CEEEECCCSSSTT-HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred             eEEEEEECCCcHH-HHHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence            8899999996544 222333444  689999999998876555       45556666667787767799999984

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.75  E-value=0.012  Score=46.60  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        74 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~  145 (193)
T 2oil_A           74 VKAQIWDTAGLERYRAI-TSAYY--RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-----QA  145 (193)
T ss_dssp             EEEEEEEESCCCTTCTT-HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEeCCCchhhhhh-hHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-----cc
Confidence            77899999964321111 11222  57898988887654 56666677777776542  23467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   .......+.+..+++++
T Consensus       146 ~~~---~~~~~~~~~~~~~~~~~  165 (193)
T 2oil_A          146 REV---PTEEARMFAENNGLLFL  165 (193)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   23345566666666544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.74  E-value=0.00064  Score=57.05  Aligned_cols=38  Identities=34%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   62 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADI   62 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence            4556669999999999999999988  7777887755444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.74  E-value=0.0016  Score=52.87  Aligned_cols=42  Identities=29%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+.|.+|+||||++..|+..+.  ..+.+|.+++.|...
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCccc
Confidence            345666678899999999999999998  778999999888654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.72  E-value=0.0021  Score=51.97  Aligned_cols=47  Identities=30%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+......+.++.|..|+||||++..||..+.  ..|..+.++|.|.
T Consensus        17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~   63 (200)
T 3uie_A           17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDN   63 (200)
T ss_dssp             HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred             HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCch
Confidence            4444444555666669999999999999999998  6787777888763

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.70  E-value=0.011  Score=45.50  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+....  ...+.+|.|+.|..      .
T Consensus        52 ~~~~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~  122 (170)
T 1g16_A           52 VKLQIWDTAGQERFRT-ITTAYY--RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------T  122 (170)
T ss_dssp             EEEEEECCTTGGGTSC-CCHHHH--TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT------T
T ss_pred             EEEEEEeCCCChhhhh-hHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC------c
Confidence            6789999995321100 011222  57899999888754 56666777777665442  22467899998831      1


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...   ..+..+++.+..+++++
T Consensus       123 ~~~---~~~~~~~~~~~~~~~~~  142 (170)
T 1g16_A          123 RVV---TADQGEALAKELGIPFI  142 (170)
T ss_dssp             CCS---CHHHHHHHHHHHTCCEE
T ss_pred             Ccc---CHHHHHHHHHHcCCeEE
Confidence            111   23445666666776554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.68  E-value=0.014  Score=50.49  Aligned_cols=66  Identities=14%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             ccEEEEcCCCCCCh-------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD-------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~-------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.++|+|||+....       ........+  ..+|.+++|++.+..--.....+++.+.+.  +.+ ..+|+|++|.
T Consensus        55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl  129 (301)
T 1wf3_A           55 RQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDA  129 (301)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGG
T ss_pred             cEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECccc
Confidence            78999999964431       011122333  689999999987542112234445666655  555 5688999984

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.68  E-value=0.0041  Score=50.97  Aligned_cols=38  Identities=18%  Similarity=-0.038  Sum_probs=33.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...|.|+.|.-|+||||.+..++..+.  .+|++|+++-.
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~   64 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKP   64 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEe
Confidence            345777889999999999999999999  89999999853

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.68  E-value=0.011  Score=45.48  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCC--eeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIP--IIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+.....+  .+.+|.|++|..     ..
T Consensus        55 ~~~~~~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----~~  126 (170)
T 1r2q_A           55 VKFEIWDTAGQERYHS-LAPMYY--RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NK  126 (170)
T ss_dssp             EEEEEEEECCSGGGGG-GHHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEeCCCcHHhhh-hhHHhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cc
Confidence            7899999996432111 112222  57899999887754 5677777777777654322  355667999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+...++.+..+.+++
T Consensus       127 ~~~---~~~~~~~~~~~~~~~~~  146 (170)
T 1r2q_A          127 RAV---DFQEAQSYADDNSLLFM  146 (170)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   12345556556665544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.67  E-value=0.0027  Score=52.09  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=35.3

Q ss_pred             HHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         38 LVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        38 ~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .++..+... ...|+++ |.+|+||||++..|+..+.  .. .++..++.|+.
T Consensus        28 ~~r~~~~~~~~~~i~iv-G~~gvGKTtl~~~l~~~~~--~~-~~~~~i~~d~~   76 (226)
T 2hf9_A           28 KNRKLLNKHGVVAFDFM-GAIGSGKTLLIEKLIDNLK--DK-YKIACIAGDVI   76 (226)
T ss_dssp             HHHHHHHHTTCEEEEEE-ESTTSSHHHHHHHHHHHHT--TT-CCEEEEEEETT
T ss_pred             HHHHHHHhCCCeEEEEE-cCCCCCHHHHHHHHHHHhc--cC-CeEEEEECCCC
Confidence            344444333 4555555 7799999999999999987  54 78999998874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.66  E-value=0.024  Score=45.67  Aligned_cols=89  Identities=16%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+.-..  ...... .-..+|.+|++.+.+ ..++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        75 ~~l~l~Dt~G~~~~--~~~~~~-~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~  146 (201)
T 2ew1_A           75 VKLQIWDTAGQERF--RSITQS-YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ER  146 (201)
T ss_dssp             EEEEEEEECCSGGG--HHHHGG-GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEECCCcHHH--HHHHHH-HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence            67899999964321  112111 125789999998765 456666777777765432  22456888999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .++.   .+..+++.+..+.+++
T Consensus       147 ~~v~---~~~~~~~~~~~~~~~~  166 (201)
T 2ew1_A          147 REVS---QQRAEEFSEAQDMYYL  166 (201)
T ss_dssp             CSSC---HHHHHHHHHHHTCCEE
T ss_pred             cccC---HHHHHHHHHHcCCEEE
Confidence            1221   3345566666666554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.65  E-value=0.0011  Score=58.96  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...+|..+.  ....+|.+-+.|.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i   68 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence            3455558899999999999999998  7777887765554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.64  E-value=0.00054  Score=60.81  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+.|.
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i   79 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV   79 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence            33455559999999999999999998  7777887766554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.62  E-value=0.023  Score=44.97  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        65 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~  136 (196)
T 3tkl_A           65 IKLQIWDTAGQERFRT-ITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TK  136 (196)
T ss_dssp             EEEEEEEECCSGGGCT-THHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred             EEEEEEECCCcHhhhh-hHHHHH--hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cc
Confidence            6789999996432111 112223  57999999887654 66666777777775542  22456888999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   .....+++.+..+.+++
T Consensus       137 ~~~---~~~~~~~~~~~~~~~~~  156 (196)
T 3tkl_A          137 KVV---DYTTAKEFADSLGIPFL  156 (196)
T ss_dssp             CCS---CHHHHHHHHHHTTCCEE
T ss_pred             ccc---CHHHHHHHHHHcCCcEE
Confidence            111   13456677777787766

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.62  E-value=0.0016  Score=58.14  Aligned_cols=39  Identities=28%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+.|.
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i   75 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV   75 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence            33555559999999999999999998  7777888765554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.62  E-value=0.00078  Score=55.85  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~   69 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD   69 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence            444558999999999999999988  67778877655543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.60  E-value=0.0094  Score=51.70  Aligned_cols=66  Identities=20%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChH--------HH-HHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDE--------HL-SLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~--------~~-~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++++|+|+|+.....        .. .....+  ..+|.++++++.+. .+......+++.+...+.+ ..+|+|++|.
T Consensus        59 ~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl  134 (308)
T 3iev_A           59 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDK  134 (308)
T ss_dssp             EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGG
T ss_pred             CeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccC
Confidence            889999999653211        11 112222  46899999998875 3444444447777776666 5588999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.011  Score=46.85  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+.-.. .......+  ..+|.++++.+.+ ..++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        72 ~~~~i~Dt~G~~~~-~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  143 (191)
T 3dz8_A           72 VKLQIWDTAGQERY-RTITTAYY--RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-----EE  143 (191)
T ss_dssp             EEEEEECHHHHHHC-HHHHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEeCCChHHH-HHHHHHHH--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence            78999999952211 11122223  5799999988776 467777777777776542  22466888999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+.+.+..+.+++
T Consensus       144 ~~~---~~~~~~~~~~~~~~~~~  163 (191)
T 3dz8_A          144 RVV---PTEKGQLLAEQLGFDFF  163 (191)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   23445666677777655

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.58  E-value=0.032  Score=44.05  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+............+  ..+|.+|++.+.+. .++..+..++..+...    +.+ +.+|.|++|..     
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  140 (189)
T 1z06_A           69 IKIQLWDTAGQERFRKSMVQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLR-----  140 (189)
T ss_dssp             EEEEEEECCCSHHHHTTTHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCG-----
T ss_pred             EEEEEEECCCchhhhhhhhHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence            68999999963211100112223  57999999988654 5666666666666432    334 66899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...++   ..+..+++.+..+++++
T Consensus       141 ~~~~v---~~~~~~~~~~~~~~~~~  162 (189)
T 1z06_A          141 SAIQV---PTDLAQKFADTHSMPLF  162 (189)
T ss_dssp             GGCCS---CHHHHHHHHHHTTCCEE
T ss_pred             cccee---CHHHHHHHHHHcCCEEE
Confidence            11111   13445666666776655

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.58  E-value=0.00015  Score=62.25  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i   72 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI   72 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence            3444558999999999999999998  7777888766555

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.57  E-value=0.022  Score=48.40  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++++ |.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus         5 v~lv-G~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i   40 (270)
T 3sop_A            5 IMVV-GQSGLGKSTLVNTLFKSQV--SRKASSWNREEKI   40 (270)
T ss_dssp             EEEE-ESSSSSHHHHHHHHHHHHC--------------C
T ss_pred             EEEE-CCCCCCHHHHHHHHhCCCC--CCCCccccCCccc
Confidence            4444 7899999999999999988  6666776655443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.57  E-value=0.0025  Score=52.93  Aligned_cols=41  Identities=22%  Similarity=0.229  Sum_probs=35.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+.++.|.+|+||||++..+|..+.  ..+.+|++++.+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEH   62 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence            445667778899999999999999998  78999999998764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.55  E-value=0.00055  Score=62.79  Aligned_cols=54  Identities=20%  Similarity=0.370  Sum_probs=42.7

Q ss_pred             cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~   89 (294)
                      ...+.|...+.. ....+.++.|..|+||||++.++|...+  . .|.+|+++++...
T Consensus       185 tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          185 TGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEGVGVGIYSLEMP  240 (444)
T ss_dssp             CSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSSC
T ss_pred             CCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence            445666666643 2456888889999999999999999988  4 5889999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.54  E-value=0.0048  Score=47.23  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=39.1

Q ss_pred             ccEEEEcCCCCCC-----hHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTS-----DEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~-----~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+...     ..... ....+  ..+|.++++.+.+...-.....+.+.+...+.+ +.+|.|+.|.
T Consensus        49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  120 (161)
T 2dyk_A           49 GRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD  120 (161)
T ss_dssp             EEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred             ceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence            5788999996443     11111 12223  578989988877652112223445555555666 5689999884

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.54  E-value=0.049  Score=41.53  Aligned_cols=88  Identities=16%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        52 ~~~~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  122 (168)
T 1u8z_A           52 VQIDILDTAGQEDYAA-IRDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE-----  122 (168)
T ss_dssp             EEEEEEECCC---CHH-HHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG-----
T ss_pred             EEEEEEECCCcchhHH-HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc-----
Confidence            7899999996432211 111222  36888888887654 5666666666666432    344 66999999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...++   ..+...++.+..+.+++
T Consensus       123 ~~~~~---~~~~~~~~~~~~~~~~~  144 (168)
T 1u8z_A          123 DKRQV---SVEEAKNRADQWNVNYV  144 (168)
T ss_dssp             GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccCcc---CHHHHHHHHHHcCCeEE
Confidence            11111   13345566666666544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.54  E-value=0.00048  Score=61.32  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..+..+-|.+|+||||+...||..+.  ....+|.+-+.|..
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~   68 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT   68 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence            33455558999999999999999998  77778887665543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.52  E-value=0.018  Score=46.01  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+..... ......+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        57 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  128 (203)
T 1zbd_A           57 IKLQIWDTAGLERYR-TITTAYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DE  128 (203)
T ss_dssp             EEEEEEEECCSGGGH-HHHHTTG--GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-----TS
T ss_pred             EEEEEEECCCchhhc-chHHHhh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----cc
Confidence            688999999643221 1122222  46899999888754 56677777777776532  22466899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+.++++++
T Consensus       129 ~~~---~~~~~~~~~~~~~~~~~  148 (203)
T 1zbd_A          129 RVV---SSERGRQLADHLGFEFF  148 (203)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccc---CHHHHHHHHHHCCCeEE
Confidence            111   23455667777776655

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.52  E-value=0.071  Score=42.41  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        62 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  132 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAI-RDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE-----  132 (206)
T ss_dssp             EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG-----
T ss_pred             EEEEEEcCCChhhhHHH-HHHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc-----
Confidence            68999999965432221 11222  36888888886654 6666776666666543    344 56899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...++   ..+.+.++.+..+.+++
T Consensus       133 ~~~~~---~~~~~~~~~~~~~~~~~  154 (206)
T 2bov_A          133 DKRQV---SVEEAKNRAEQWNVNYV  154 (206)
T ss_dssp             GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccccc---cHHHHHHHHHHhCCeEE
Confidence            11111   23445666666676655

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=96.52  E-value=0.0089  Score=56.70  Aligned_cols=65  Identities=17%  Similarity=0.085  Sum_probs=44.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |.+.|+|+|+... ....+...+  ..+|.+|+|++........+...+......+++ +-+++|++|.
T Consensus        73 ~~inliDTPGh~d-F~~ev~r~l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl  137 (600)
T 2ywe_A           73 YKLHLIDTPGHVD-FSYEVSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDL  137 (600)
T ss_dssp             EEEEEECCCCSGG-GHHHHHHHH--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred             EEEEEEECCCcHh-HHHHHHHHH--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCc
Confidence            7899999996543 223344444  579999999988664333444455555566777 6688999984

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.52  E-value=0.016  Score=49.09  Aligned_cols=89  Identities=18%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             ccEEEEcCCCCCCh-----HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC-CCeeEEEeccccccCCCC
Q psy11347        160 LEYLLIDTPPGTSD-----EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN-IPIIGVVENMATFVCPKC  233 (294)
Q Consensus       160 yd~IiiD~p~~~~~-----~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~~~~~~  233 (294)
                      +.+.|+|+|+....     ........+....+|.++++++.+..  .....+...+...+ .+ +.+|+|++|..    
T Consensus        50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~----  122 (271)
T 3k53_A           50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLL----  122 (271)
T ss_dssp             EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHH----
T ss_pred             ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcC----
Confidence            67899999964321     11112222222579999999877653  34444455555556 55 56899999832    


Q ss_pred             CCCCccCCCCchhHHHHHhhcCCceee
Q psy11347        234 TKPSEIFPKDSGGAEKMCAELSVPFLG  260 (294)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~~g~~~l~  260 (294)
                       ....+.    ...+.+.+.+|++++.
T Consensus       123 -~~~~~~----~~~~~l~~~lg~~~~~  144 (271)
T 3k53_A          123 -KKKGAK----IDIKKMRKELGVPVIP  144 (271)
T ss_dssp             -HHHTCC----CCHHHHHHHHSSCEEE
T ss_pred             -cccccH----HHHHHHHHHcCCcEEE
Confidence             111111    1256677777877763

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.51  E-value=0.015  Score=46.75  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|+|.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        57 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  128 (206)
T 2bcg_Y           57 VKLQIWDTAGQERFRTI-TSSYY--RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-----DK  128 (206)
T ss_dssp             EEEEEECCTTTTTTTCC-CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred             EEEEEEeCCChHHHHHH-HHHhc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence            68999999964321100 11122  57899999988754 67777777777776542  23467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+...++.+..+++++
T Consensus       129 ~~~---~~~~~~~~~~~~~~~~~  148 (206)
T 2bcg_Y          129 RVV---EYDVAKEFADANKMPFL  148 (206)
T ss_dssp             CCS---CHHHHHHHHHHTTCCEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   23445666666776655

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.50  E-value=0.017  Score=47.81  Aligned_cols=97  Identities=9%  Similarity=0.064  Sum_probs=44.9

Q ss_pred             ccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ..+.|+|+|+-...         .....+. .....+|.+|+|++.+..   ....+..+.+.+.........+|+|+.|
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D  156 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCIL-LTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKD  156 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHH-HTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHH-hcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence            67899999964321         1111111 111356888888875432   2223333333332211124678899988


Q ss_pred             ccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        228 FVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....  ....+......+.++++.+..+..+.
T Consensus       157 ~~~~--~~~~~~i~~~~~~l~~l~~~~~~~~~  186 (239)
T 3lxx_A          157 DLGD--TNLHDYLREAPEDIQDLMDIFGDRYC  186 (239)
T ss_dssp             GC--------------CHHHHHHHHHHSSSEE
T ss_pred             cCCc--ccHHHHHHhchHHHHHHHHHcCCEEE
Confidence            4210  01111111222356777777776554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.49  E-value=0.0048  Score=59.47  Aligned_cols=81  Identities=14%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+.|+|+|+... ........+  ..+|.+++|+++.......+..++..+...+++.+ +++|+.+.      .    
T Consensus        74 ~~~nliDTpG~~~-f~~~~~~~l--~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~------~----  139 (665)
T 2dy1_A           74 HRVFLLDAPGYGD-FVGEIRGAL--EAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDK------G----  139 (665)
T ss_dssp             EEEEEEECCCSGG-GHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGG------C----
T ss_pred             EEEEEEeCCCccc-hHHHHHHHH--hhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCch------h----
Confidence            7889999996443 222333334  46899999998766555566677788877788754 78999883      1    


Q ss_pred             CCCCchhHHHHHhhcC
Q psy11347        240 FPKDSGGAEKMCAELS  255 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g  255 (294)
                       ....+..+++.+.++
T Consensus       140 -~~~~~~~~~l~~~l~  154 (665)
T 2dy1_A          140 -GDYYALLEDLRSTLG  154 (665)
T ss_dssp             -CCHHHHHHHHHHHHC
T ss_pred             -hhHHHHHHHHHHHhC
Confidence             223445666666666

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.49  E-value=0.0015  Score=55.59  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNS   77 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCc
Confidence            3444558999999999999999998  778888887666543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.46  E-value=0.00051  Score=58.55  Aligned_cols=39  Identities=28%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~   71 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERK   71 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence            33445558999999999999999988  6777887755443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.46  E-value=0.092  Score=40.83  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        66 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  136 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAI-RDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE-----  136 (187)
T ss_dssp             EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG-----
T ss_pred             EEEEEEECCCCcccHHH-HHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence            68999999965432211 12222  36888888887654 5666666666655432    344 56899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ......++.+..+.+++
T Consensus       137 ~~~~~---~~~~~~~~~~~~~~~~~  158 (187)
T 2a9k_A          137 DKRQV---SVEEAKNRAEQWNVNYV  158 (187)
T ss_dssp             GGCCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccCcc---CHHHHHHHHHHcCCeEE
Confidence            11111   23445666666676554

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.43  E-value=0.0023  Score=50.90  Aligned_cols=37  Identities=32%  Similarity=0.503  Sum_probs=29.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+.++.|..|+||||++..|+..+.  ..|.+..+++.|
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~   40 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFG   40 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehH
Confidence            4566778899999999999999999  778666666653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.43  E-value=0.058  Score=41.58  Aligned_cols=67  Identities=15%  Similarity=0.037  Sum_probs=40.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+........... .....+|.++++.+.+ ..++..+..++..+...    +.+ +.+|.|+.|.
T Consensus        52 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl  123 (175)
T 2nzj_A           52 TTLVVVDTWEAEKLDKSWSQE-SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADL  123 (175)
T ss_dssp             EEEEEECCC-------CHHHH-HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred             EEEEEEecCCCCccchhhhHH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence            678999999643311111111 1114688888887665 46777777777777654    344 5689999984

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.42  E-value=0.0027  Score=53.71  Aligned_cols=37  Identities=46%  Similarity=0.778  Sum_probs=31.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|-.|+||||++..|+..|.  ..|..++++|.|.
T Consensus         6 lIvl~G~pGSGKSTla~~La~~L~--~~g~~~i~~~~D~   42 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSKNLAKILS--KNNIDVIVLGSDL   42 (260)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECTHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH--hCCCEEEEECchH
Confidence            455557799999999999999998  7898888887763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.41  E-value=0.12  Score=39.10  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+... .++..+...+..+.+    .+.+ +.+|.|+.|..     
T Consensus        51 ~~~~l~D~~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  121 (167)
T 1kao_A           51 SVLEILDTAGTEQFASM-RDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE-----  121 (167)
T ss_dssp             EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG-----
T ss_pred             EEEEEEECCCchhhHHH-HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc-----
Confidence            67899999964432221 11222  35788888876554 566666666655543    2344 67899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...++   ......++.+..+.+++
T Consensus       122 ~~~~~---~~~~~~~~~~~~~~~~~  143 (167)
T 1kao_A          122 SEREV---SSSEGRALAEEWGCPFM  143 (167)
T ss_dssp             GGCCS---CHHHHHHHHHHHTSCEE
T ss_pred             ccccC---CHHHHHHHHHHhCCCEE
Confidence            11111   12344566666666555

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.41  E-value=0.033  Score=48.81  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +..+.|.+|+||||+...|+..+.  .....|.+-|.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~  207 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDT  207 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCe
Confidence            444557889999999999999988  66666665544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.41  E-value=0.018  Score=49.00  Aligned_cols=89  Identities=19%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChH---------HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347        160 LEYLLIDTPPGTSDE---------HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC  230 (294)
Q Consensus       160 yd~IiiD~p~~~~~~---------~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~  230 (294)
                      +.+.|+|+|+.....         .......+....+|.+|+|++.+.  ......+...+.+.+.+ +.+|+||+|.. 
T Consensus        50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~-  125 (274)
T 3i8s_A           50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIA-  125 (274)
T ss_dssp             CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHH-
T ss_pred             CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccch-
Confidence            678999999643211         011111111257999999998765  44555666677777777 55889998842 


Q ss_pred             CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347        231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG  260 (294)
Q Consensus       231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~  260 (294)
                          ....+    ....+.+.+.+|.+++.
T Consensus       126 ----~~~~~----~~~~~~l~~~lg~~~i~  147 (274)
T 3i8s_A          126 ----EKQNI----RIEIDALSARLGCPVIP  147 (274)
T ss_dssp             ----HHTTE----EECHHHHHHHHTSCEEE
T ss_pred             ----hhhhH----HHHHHHHHHhcCCCEEE
Confidence                11111    12245666667777663

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.37  E-value=0.04  Score=42.28  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+....   ..+.......+|.++++.+.+. .++..+..++..+...  ....+.+|.|+.|..     ..
T Consensus        55 ~~l~i~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~  126 (170)
T 1z08_A           55 VNLAIWDTAGQERF---HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KE  126 (170)
T ss_dssp             EEEEEEECCCC----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GG
T ss_pred             EEEEEEECCCcHhh---hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cc
Confidence            68899999964321   1111111157898998887654 5667777776666542  122467899999852     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+.+++
T Consensus       127 ~~~---~~~~~~~~~~~~~~~~~  146 (170)
T 1z08_A          127 RHV---SIQEAESYAESVGAKHY  146 (170)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   13445666666676554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.36  E-value=0.013  Score=47.08  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+..... ......+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        74 ~~l~l~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~  145 (200)
T 2o52_A           74 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-----PE  145 (200)
T ss_dssp             EEEEEECCTTHHHHS-CCCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-----GG
T ss_pred             eEEEEEcCCCcHhHH-HHHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cc
Confidence            688999999521000 0011122  57899999887654 56666677776665432  22467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ......++.+..+++++
T Consensus       146 ~~v---~~~~~~~~~~~~~~~~~  165 (200)
T 2o52_A          146 REV---TFLEASRFAQENELMFL  165 (200)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   12344556666666554

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.35  E-value=0.012  Score=48.83  Aligned_cols=40  Identities=20%  Similarity=0.092  Sum_probs=34.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ++..|-|+.|.-|+||||-+..++..+.  .+|++|+++-.-
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~   56 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYA   56 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEET
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeec
Confidence            3556778889999999999999999999  899999999743

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.34  E-value=0.0018  Score=55.83  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..+.|..|+||||++..|+..+.  ..+.++.++|+|.-.
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg--~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDAFH   45 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGGGB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh--hcCCCeeEeecchhh
Confidence            455558899999999999999988  678889999999654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.34  E-value=0.0018  Score=55.30  Aligned_cols=40  Identities=30%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i   83 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL   83 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence            333455558999999999999999998  6777887755443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.32  E-value=0.019  Score=45.60  Aligned_cols=66  Identities=17%  Similarity=0.096  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|+|.+.+. .+...+..++..+....  ...+.+|.|+.|.
T Consensus        75 ~~l~l~Dt~G~~~~~~-~~~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl  143 (192)
T 2il1_A           75 IRLQIWDTAGQERFNS-ITSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC  143 (192)
T ss_dssp             EEEEEEEECCSGGGHH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEEeCCCcHHHHH-HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence            7899999996432211 122223  46899999887654 56766777777666542  2346789999984

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.32  E-value=0.003  Score=53.33  Aligned_cols=31  Identities=29%  Similarity=0.452  Sum_probs=24.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG   82 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl   82 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~   63 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE   63 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE
Confidence            444558999999999999999987  5555554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.31  E-value=0.038  Score=44.15  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+++.........-..+  ..+|.+|++.+.+ ..++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        72 ~~l~i~Dt~g~~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~-----  143 (195)
T 3cbq_A           72 VTLVVYDIWEQGDAGGWLRDHCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA-----  143 (195)
T ss_dssp             EEEEEECCCCCSGGGHHHHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT-----
T ss_pred             EEEEEEecCCCccchhhhHHHhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc-----
Confidence            67889999854332211111112  3588888888765 46677777777766542    344 56889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.   .+..+++.+..+.+++
T Consensus       144 ~~~~v~---~~~~~~~a~~~~~~~~  165 (195)
T 3cbq_A          144 RSREVS---LEEGRHLAGTLSCKHI  165 (195)
T ss_dssp             TTCCSC---HHHHHHHHHHTTCEEE
T ss_pred             ccCCcC---HHHHHHHHHHhCCEEE
Confidence            111221   3345566666665544

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=96.30  E-value=0.012  Score=59.64  Aligned_cols=66  Identities=23%  Similarity=0.273  Sum_probs=46.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus       359 ~kI~IIDTPGHed-F~~~mi~ga--s~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDL  424 (1289)
T 3avx_A          359 RHYAHVDCPGHAD-YVKNMITGA--AQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM  424 (1289)
T ss_dssp             CEEEEEECCCHHH-HHHHHHHTS--CCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTT
T ss_pred             EEEEEEECCChHH-HHHHHHHHH--hhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence            7899999996432 222233333  68999999998876545556666677777788866789999984

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.30  E-value=0.004  Score=49.47  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=30.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.++.|-.|+||||++..|+..|.  ..|.++.+++.|
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~   38 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYG   38 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECC
Confidence            445567889999999999999999  789999888653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.29  E-value=0.017  Score=46.50  Aligned_cols=88  Identities=16%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..      .
T Consensus        69 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~  139 (213)
T 3cph_A           69 VKLQLWDTAGQERFRT-ITTAYY--RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------T  139 (213)
T ss_dssp             EEEEEECCTTGGGGTC-CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS------S
T ss_pred             EEEEEEeCCCcHHHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------c
Confidence            6899999996321110 011222  57899999988754 56666677777665432  22467899999831      1


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+.++++++
T Consensus       140 ~~~---~~~~~~~~~~~~~~~~~  159 (213)
T 3cph_A          140 RVV---TADQGEALAKELGIPFI  159 (213)
T ss_dssp             CCS---CHHHHHHHHHHHTCCEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   23445666666776655

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.28  E-value=0.00062  Score=60.90  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.|
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~   66 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKL   66 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEE
Confidence            3455559999999999999999988  777788775444

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.042  Score=43.30  Aligned_cols=88  Identities=15%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC---CCeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN---IPIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~~~~~~~~  235 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....   ...+.+|.|+.|..      
T Consensus        64 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~------  134 (195)
T 1x3s_A           64 AKLAIWDTAGQERFRT-LTPSYY--RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE------  134 (195)
T ss_dssp             EEEEEEEECSSGGGCC-SHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS------
T ss_pred             EEEEEEeCCCchhhhh-hhHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc------
Confidence            7899999996432111 112223  57899999987654 56667777777776532   23467889999841      


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...+   ..+...++.+..+.+++
T Consensus       135 ~~~~---~~~~~~~~~~~~~~~~~  155 (195)
T 1x3s_A          135 NREV---DRNEGLKFARKHSMLFI  155 (195)
T ss_dssp             SCCS---CHHHHHHHHHHTTCEEE
T ss_pred             cccc---CHHHHHHHHHHcCCEEE
Confidence            1111   13345566666676654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.27  E-value=0.0051  Score=53.61  Aligned_cols=54  Identities=13%  Similarity=0.282  Sum_probs=44.2

Q ss_pred             cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++.|...+.. ....+.++.|..|+||||++.++|...+  ..|.+|+++.+...
T Consensus        53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~s  107 (315)
T 3bh0_A           53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMG  107 (315)
T ss_dssp             CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSSC
T ss_pred             CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCCC
Confidence            456667766643 3566888889999999999999999999  78899999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.27  E-value=0.024  Score=43.66  Aligned_cols=89  Identities=13%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.++|+|+............+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        51 ~~~~i~D~~g~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~-----  122 (169)
T 3q85_A           51 VTLIVYDIWEQGDAGGWLQDHCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA-----  122 (169)
T ss_dssp             EEEEEECCCCC--------CHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCG-----
T ss_pred             EEEEEEECCCccccchhhhhhhh--ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchh-----
Confidence            77889999864321110111111  35788888887654 6677777777666543    344 56889998842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ..+..+++.+..+.+++
T Consensus       123 ~~~~~---~~~~~~~~~~~~~~~~~  144 (169)
T 3q85_A          123 RSREV---SLEEGRHLAGTLSCKHI  144 (169)
T ss_dssp             GGCCS---CHHHHHHHHHHTTCEEE
T ss_pred             hcccC---CHHHHHHHHHHcCCcEE
Confidence            11122   23455667777776654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.26  E-value=0.038  Score=43.11  Aligned_cols=88  Identities=18%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|..     
T Consensus        54 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~-----  124 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYSIF-PQTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH-----  124 (181)
T ss_dssp             EEEEEEECCCCCTTCCC-CGGGT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCT-----
T ss_pred             EEEEEEeCCCchhhhHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccch-----
Confidence            77899999963321100 11111  46898888887654 6666666666655332    344 56889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ..+..+++.+..+.+++
T Consensus       125 ~~~~~---~~~~~~~~~~~~~~~~~  146 (181)
T 3t5g_A          125 MERVI---SYEEGKALAESWNAAFL  146 (181)
T ss_dssp             TTCCS---CHHHHHHHHHHTTCEEE
T ss_pred             hccee---cHHHHHHHHHHhCCcEE
Confidence            12222   23456677777777655

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.25  E-value=0.016  Score=45.76  Aligned_cols=89  Identities=11%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|++.+.+ ..++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        71 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  142 (189)
T 2gf9_A           71 IKLQIWDTAGQERYRTI-TTAYY--RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-----DE  142 (189)
T ss_dssp             EEEEEEECCSCCSSCCS-GGGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEeCCCcHHHhhh-HHHhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cc
Confidence            78899999964321100 11222  5789999998774 456777777777776542  23467899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+.++++++
T Consensus       143 ~~~---~~~~~~~~~~~~~~~~~  162 (189)
T 2gf9_A          143 RVV---PAEDGRRLADDLGFEFF  162 (189)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             cCC---CHHHHHHHHHHcCCeEE
Confidence            111   13455667777776554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.25  E-value=0.042  Score=43.00  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+..... ......+  ..+|.+|++.+.+. .+...+..++..+....  ...+.+|.|+.|..     ..
T Consensus        59 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~  130 (186)
T 2bme_A           59 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-----AD  130 (186)
T ss_dssp             EEEEEEEECCSGGGH-HHHHTTS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEeCCCcHHHH-HHHHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cc
Confidence            678999999643221 1122222  57899998887654 56666666666665431  22467899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ......++.+..+.+++
T Consensus       131 ~~~---~~~~~~~~~~~~~~~~~  150 (186)
T 2bme_A          131 REV---TFLEASRFAQENELMFL  150 (186)
T ss_dssp             CCS---CHHHHHHHHHHTTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   12345566666666554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.24  E-value=0.0055  Score=49.86  Aligned_cols=49  Identities=16%  Similarity=0.073  Sum_probs=37.6

Q ss_pred             hHHHHhhhc--cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         36 IELVKSHLS--NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        36 ~~~i~~~~~--~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ++.|...+.  -....+.++.|++|+||||++..+|.  .   .+.+|++++.+.+
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~   56 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGG   56 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCC
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCC
Confidence            455665554  23456777889999999999999999  4   3779999998763

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=96.21  E-value=0.0055  Score=56.70  Aligned_cols=65  Identities=22%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+. ......+...+  ..+|.+|++++.+......+...+..+...+++. .+++|++|.
T Consensus        73 ~~i~iiDtPGh-~~~~~~~~~~~--~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl  137 (482)
T 1wb1_A           73 YRITLVDAPGH-ADLIRAVVSAA--DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN  137 (482)
T ss_dssp             EEEEECCCSSH-HHHHHHHHHHT--TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred             EEEEEEECCCh-HHHHHHHHHHH--hhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence            78999999964 22222333333  6899999999876644455666666777788887 789999984

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.21  E-value=0.0021  Score=56.89  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.|.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i   64 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDV   64 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence            3555559999999999999999998  7777888766554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.21  E-value=0.004  Score=52.33  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~~   89 (294)
                      .+..+.|..|+||||++..|+..|.  ..     +.+|.++|+|.-
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg--~~~~d~~~~~~~~i~~D~~   66 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLG--QNEVDYRQKQVVILSQDSF   66 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT--GGGSCGGGCSEEEEEGGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh--hhcccccCCceEEEecCcc
Confidence            3555668899999999999999887  43     678999999853

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.20  E-value=0.01  Score=46.68  Aligned_cols=66  Identities=17%  Similarity=0.066  Sum_probs=42.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+...+..+...   ....+.+|.|+.|.
T Consensus        65 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  134 (181)
T 2h17_A           65 TRFLMWDIGGQESLRS-SWNTYY--TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  134 (181)
T ss_dssp             EEEEEEEESSSGGGTC-GGGGGG--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEEEEECCCCHhHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence            7889999996422110 011222  57899999988765 4677777766666542   23346788999883

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.20  E-value=0.0046  Score=51.81  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~   66 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPI   66 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence            444555559999999999999999998  7778888755544

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.19  E-value=0.00047  Score=61.23  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...||..+.  ....+|.+-+.|
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~   68 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL   68 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence            3455559999999999999999988  677778775444

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.15  E-value=0.016  Score=54.98  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |.+.|+|+|+... ....+...+  ..+|.+|+|++........+...+......+++ +-+++|++|.
T Consensus        71 ~~l~liDTPGh~d-F~~ev~~~l--~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl  135 (599)
T 3cb4_D           71 YQLNFIDTPGHVD-FSYEVSRSL--AACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDL  135 (599)
T ss_dssp             EEEEEEECCCCGG-GHHHHHHHH--HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred             EEEEEEECCCchH-HHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCc
Confidence            8899999996543 333344444  468999999987653333344444444556776 5688999984

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.15  E-value=0.03  Score=45.86  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=39.6

Q ss_pred             ccEEEEcCCCCCC----hH----HHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhc--CCCeeEEEeccc
Q psy11347        160 LEYLLIDTPPGTS----DE----HLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKV--NIPIIGVVENMA  226 (294)
Q Consensus       160 yd~IiiD~p~~~~----~~----~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~--~~~~~~vvvN~~  226 (294)
                      +.+.|+|+|+...    ..    ........  ..+|.+|++.+.+..   .......++..+...  +.+ +.+|.|++
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~  152 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTTITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKI  152 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHHHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHHHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCc
Confidence            6789999996521    11    11111112  577888888876542   223344566666654  444 66899999


Q ss_pred             cc
Q psy11347        227 TF  228 (294)
Q Consensus       227 ~~  228 (294)
                      |.
T Consensus       153 Dl  154 (228)
T 2qu8_A          153 DK  154 (228)
T ss_dssp             GG
T ss_pred             cc
Confidence            85

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.14  E-value=0.082  Score=40.84  Aligned_cols=65  Identities=11%  Similarity=-0.010  Sum_probs=40.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK-------VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....  ....... ...+|.++++.+.+. .+...+..++..+..       .+.+ +.+|.|+.|.
T Consensus        56 ~~~~i~Dt~G~~~~--~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl  128 (177)
T 1wms_A           56 VTMQIWDTAGQERF--RSLRTPF-YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDI  128 (177)
T ss_dssp             EEEEEEECCCCGGG--HHHHGGG-GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred             EEEEEEeCCCchhh--hhhHHHH-HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence            67999999964322  1122111 157898888876654 556666666665543       2333 5689999984

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.12  E-value=0.016  Score=61.02  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             cChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         34 PGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        34 ~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ..++.|...+.   -....+.++.|..|+||||++.++|..++  ..|.+|+++++....
T Consensus       715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~VlyiS~Ees~  772 (1706)
T 3cmw_A          715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL  772 (1706)
T ss_dssp             CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCC
T ss_pred             cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH--HcCCCeEEEeccchH
Confidence            45666776665   34566777789999999999999999999  789999999997653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.12  E-value=0.005  Score=48.64  Aligned_cols=37  Identities=30%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|..|+||||++..|+..|.  ..|..+..+|.|.
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~l~--~~g~~~i~~d~~~   43 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDN   43 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh--hCCCcEEEECChH
Confidence            444568899999999999999998  6788888887654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.12  E-value=0.0016  Score=53.62  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+-+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~   72 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP   72 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence            444458999999999999999988  666777764433

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.11  E-value=0.038  Score=42.78  Aligned_cols=89  Identities=24%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++.....++..+...  ....+.+|.|+.|..     ..
T Consensus        63 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  134 (179)
T 2y8e_A           63 VRLQLWDTAGQERFRS-LIPSYI--RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-----DK  134 (179)
T ss_dssp             EEEEEEEECCSGGGGG-GSHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-----GG
T ss_pred             EEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----cc
Confidence            6789999996432111 111122  46898998887754 5666666666666543  122467899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   .......+.+..+.+++
T Consensus       135 ~~~---~~~~~~~~~~~~~~~~~  154 (179)
T 2y8e_A          135 RQV---STEEGERKAKELNVMFI  154 (179)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             CcC---CHHHHHHHHHHcCCeEE
Confidence            111   12344555556666554

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.10  E-value=0.0099  Score=55.57  Aligned_cols=51  Identities=10%  Similarity=0.204  Sum_probs=38.2

Q ss_pred             hHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         36 IELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        36 ~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.+...++.  ....+..+.|..|+||||++..++..+.  ..|.+++++....
T Consensus       267 ~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee  319 (525)
T 1tf7_A          267 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEE  319 (525)
T ss_dssp             CHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSS
T ss_pred             hHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeC
Confidence            3445544332  3455666779999999999999999999  7788998887653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.09  E-value=0.021  Score=45.68  Aligned_cols=65  Identities=23%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+ ..++..+..++..+...   +.+ +.+|.|+.|.
T Consensus        77 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl  145 (199)
T 2p5s_A           77 TVLQLWDTAGQERFRS-IAKSYF--RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI  145 (199)
T ss_dssp             EEEEEEECTTCTTCHH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred             EEEEEEECCCCcchhh-hHHHHH--hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence            6789999996543221 122222  4689999988765 46666677777766543   344 6789999984

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.08  E-value=0.0077  Score=46.96  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+....... ....+  ..+|.++++.+.+..........+..+...+.+ +.+|.|+.|.
T Consensus        55 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl  119 (178)
T 2lkc_A           55 KKITFLDTPGHEAFTTM-RARGA--QVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK  119 (178)
T ss_dssp             EEEEESCCCSSSSSSCS-CCSSC--CCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred             ceEEEEECCCCHHHHHH-HHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence            56778888853211000 00111  468888888876654444455556666666666 6689999883

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.04  E-value=0.0013  Score=55.55  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...|+..+.  .. .+|.+-+.+
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~   62 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQP   62 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEE
Confidence            3455558999999999999999998  66 677765443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.04  E-value=0.015  Score=47.16  Aligned_cols=67  Identities=19%  Similarity=0.091  Sum_probs=37.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhc--CCCcEEEEecCCc--hhhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKG--LPDIGAIVVTTPQ--EVSLLDVRKEIDFCRK-------VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~--~~ad~vliv~~~~--~~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~  228 (294)
                      +++.|+|+|+...... .....+..  ..+|.+|++.+.+  ..++......+..+..       .+.+ +.+|.|+.|.
T Consensus        55 ~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  132 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL  132 (218)
T ss_dssp             SSCEEEECCCCGGGTH-HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred             ceEEEEECCCcHHHHH-HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHh
Confidence            7899999996432111 11111100  1278888888765  2455555544444422       2344 6789999984

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.04  E-value=0.007  Score=52.02  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~   88 (294)
                      ....+.++.|.+|+||||++.++|..++  .. |.+|++++.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE   74 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC
Confidence            3455777779999999999999999998  54 77999998875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.03  E-value=0.033  Score=44.05  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        70 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~  141 (191)
T 2a5j_A           70 IKLQIWDTAGQESFRS-ITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----SR  141 (191)
T ss_dssp             EEEEEECCTTGGGTSC-CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEECCCchhhhh-hHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----Cc
Confidence            6789999995321100 011222  57899999988754 66777777777776532  22466889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+.+++
T Consensus       142 ~~v---~~~~~~~~~~~~~~~~~  161 (191)
T 2a5j_A          142 RDV---KREEGEAFAREHGLIFM  161 (191)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             ccc---CHHHHHHHHHHcCCEEE
Confidence            111   13345666666666554

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.03  E-value=0.0063  Score=53.56  Aligned_cols=55  Identities=16%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|...+.. ...-+.++.+..|+||||++.++|..++  ..|.+|+++.+...
T Consensus        30 ~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           30 PTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS   85 (338)
T ss_dssp             CCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred             cCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence            3456667766653 3556888889999999999999999999  78999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.98  E-value=0.004  Score=49.02  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=27.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |+..+.+++|-.|+||||++..||..|.  .   ..+.++.|
T Consensus         1 m~~~~i~l~G~~GsGKST~a~~La~~l~--~---~~~~~~~D   37 (178)
T 1qhx_A            1 MTTRMIILNGGSSAGKSGIVRCLQSVLP--E---PWLAFGVD   37 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSS--S---CEEEEEHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcC--C---CeEEeccc
Confidence            3445677889999999999999998876  3   34445554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.97  E-value=0.011  Score=48.04  Aligned_cols=40  Identities=35%  Similarity=0.512  Sum_probs=32.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||++..|+..+.  ..|.++..+..|.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~g~~~g~v~~d~   60 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS--AQGLPAEVVPMDG   60 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH--HTTCCEEEEESGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCceEEEecCC
Confidence            445556669999999999999999998  5576788887764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.97  E-value=0.038  Score=43.53  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=42.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|++.+.+. .++......+..+...   ....+.+|.|+.|.
T Consensus        60 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  129 (187)
T 1zj6_A           60 TRFLMWDIGGQESLRSS-WNTYY--TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  129 (187)
T ss_dssp             EEEEEEECCC----CGG-GHHHH--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             EEEEEEECCCCHhHHHH-HHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence            78999999964321111 11222  57999999988765 4677777777777543   23346789999884

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.96  E-value=0.0094  Score=48.92  Aligned_cols=50  Identities=16%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             HHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        37 ~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..++...........++.|..|+||||++..++..+.  ..+.++.+++++.
T Consensus        41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~   90 (242)
T 3bos_A           41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGI   90 (242)
T ss_dssp             HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHH
Confidence            3344333332344566678899999999999999999  7789999998743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.95  E-value=0.0082  Score=48.31  Aligned_cols=36  Identities=33%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...++.|..|+||||++..++..+.  ..+.+|+++++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh
Confidence            4556668999999999999999999  78999988866

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=95.93  E-value=0.018  Score=53.02  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=42.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ..-.+...+  ..+|.+|+|++.+...+       ..+...+..+...+++.+.+++|++|.
T Consensus       121 ~~~~iiDtPGh~~-f~~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl  193 (467)
T 1r5b_A          121 RRFSLLDAPGHKG-YVTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE  193 (467)
T ss_dssp             EEEEECCCCC------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred             eEEEEEECCCcHH-HHHHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence            7899999996532 112223333  57999999998876543       245566666677788767799999984

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.93  E-value=0.24  Score=37.57  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+ ..++..+..++..+...    +.+ +.+|.|+.|.
T Consensus        51 ~~~~l~D~~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl  120 (167)
T 1c1y_A           51 CMLEILDTAGTEQFTAM-RDLYM--KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDL  120 (167)
T ss_dssp             EEEEEEEECSSCSSTTH-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred             EEEEEEECCChHHHHHH-HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence            77899999964322111 11122  3578888888654 45666666666665432    444 5689999984

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.93  E-value=0.14  Score=39.57  Aligned_cols=65  Identities=12%  Similarity=-0.098  Sum_probs=37.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK-------VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....  ..... .....+|.+|++.+.+. .++..+..++..+..       .+. .+.+|.|+.|.
T Consensus        58 ~~~~l~Dt~G~~~~--~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl  130 (182)
T 1ky3_A           58 ATMQVWDTAGQERF--QSLGV-AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF-PFVILGNKIDA  130 (182)
T ss_dssp             EEEEEECCC-------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTC-CEEEEEECTTS
T ss_pred             EEEEEEECCCChHh--hhhhH-HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCC-cEEEEEECCcc
Confidence            78899999963321  11111 11157899998887654 566666666666543       233 36789999884

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=95.92  E-value=0.011  Score=55.57  Aligned_cols=86  Identities=19%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      |.+=|||||+..+ ....+...|  ..+|.+|+|+++...-...+..+++.+.+.+++. .+++|++|.      .    
T Consensus       100 ~~iNlIDTPGHvD-F~~Ev~raL--~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr------~----  165 (548)
T 3vqt_A          100 RVVNLLDTPGHQD-FSEDTYRVL--TAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDR------E----  165 (548)
T ss_dssp             EEEEEECCCCGGG-CSHHHHHHH--HSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTS------C----
T ss_pred             EEEEEEeCCCcHH-HHHHHHHHH--HhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccc------h----
Confidence            8999999996543 223344444  6899999999999988899999999999999995 488999984      2    


Q ss_pred             CCCCchhHHHHHhhcCCcee
Q psy11347        240 FPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..++...++++.+.++..+.
T Consensus       166 ~ad~~~~~~~i~~~l~~~~~  185 (548)
T 3vqt_A          166 ALHPLDVMADIEQHLQIECA  185 (548)
T ss_dssp             CCCHHHHHHHHHHHHTSEEE
T ss_pred             hcchhHhhhhhhhhcCCceE
Confidence            33456677888888876554

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=95.92  E-value=0.029  Score=45.94  Aligned_cols=38  Identities=18%  Similarity=-0.050  Sum_probs=31.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ...|-++.|.-|+||||.....+..+.  ..|++|+++-.
T Consensus        27 ~G~I~vitG~M~sGKTT~Llr~~~r~~--~~g~kvli~kp   64 (219)
T 3e2i_A           27 SGWIECITGSMFSGKSEELIRRLRRGI--YAKQKVVVFKP   64 (219)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCceEEEEe
Confidence            356777888899999998888888888  78999999854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=95.91  E-value=0.00083  Score=63.84  Aligned_cols=66  Identities=17%  Similarity=0.057  Sum_probs=35.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-------HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-------LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-------~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.... ...+...+  ..+|.+|+|++.+...       ...+...+..+...+++.+.+++|+++.
T Consensus       255 ~~i~iiDTPGh~~f-~~~~~~~~--~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl  327 (592)
T 3mca_A          255 KIYEIGDAPGHRDF-ISGMIAGA--SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL  327 (592)
T ss_dssp             ----CCEEESSSEE-EEECCC---------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHH-HHHHHHHH--hhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            78999999964310 00011111  4688888888776421       3455666677777888767789999984

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.89  E-value=0.026  Score=60.25  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ....+.|...+.   -....+..+.|..|+||||++.++|...+  ..|.+|+++|+....
T Consensus       365 ~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~  423 (2050)
T 3cmu_A          365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL  423 (2050)
T ss_dssp             CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCC
T ss_pred             eCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCH
Confidence            356778888886   34666888889999999999999999999  889999999997643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.89  E-value=0.0072  Score=55.32  Aligned_cols=56  Identities=13%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.|...+.. ....+.++.|..|+||||++.++|...+  ..|.+|+++.+....
T Consensus       181 ~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a--~~g~~vl~fSlEms~  237 (444)
T 3bgw_A          181 PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMGK  237 (444)
T ss_dssp             CCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH--HTTCEEEEECSSSCT
T ss_pred             CCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH--HcCCEEEEEECCCCH
Confidence            3456666666643 3566888899999999999999999999  679999999998654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.89  E-value=0.064  Score=42.56  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+... .. .....+  ..+|.++++.+.+. .++..+..++..+..    .+.+ +.+|.|++|..     
T Consensus        76 ~~~~l~Dt~G~~~-~~-~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~-----  145 (196)
T 2atv_A           76 VSMEILDTAGQED-TI-QREGHM--RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLD-----  145 (196)
T ss_dssp             EEEEEEECCCCCC-CH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGG-----
T ss_pred             EEEEEEECCCCCc-cc-chhhhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccc-----
Confidence            7889999996544 11 122222  46898998887754 666666666666653    2344 56899999852     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ..+...++.+..+.+++
T Consensus       146 ~~~~v---~~~~~~~~~~~~~~~~~  167 (196)
T 2atv_A          146 HSRQV---STEEGEKLATELACAFY  167 (196)
T ss_dssp             GGCCS---CHHHHHHHHHHHTSEEE
T ss_pred             ccccc---CHHHHHHHHHHhCCeEE
Confidence            11111   13345566666666554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.87  E-value=0.021  Score=55.23  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=39.8

Q ss_pred             ccEEEEcCCCCCCh--HHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD--EHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~--~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +++.|+|+|+-...  ..-.+...+  ..+|.+|+|++.+. .+......+.+.+...+.+ +.+|+|++|.
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl  242 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYV--NNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ  242 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHH--HSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHH--HhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence            58999999952210  011122333  46999999998754 3333333333445555555 6789999984

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.86  E-value=0.011  Score=46.44  Aligned_cols=39  Identities=28%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ....+.+.+........++.|..|+||||++..++..+.
T Consensus        30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            445555555554444456779999999999999999987

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.86  E-value=0.089  Score=40.99  Aligned_cols=88  Identities=15%  Similarity=0.259  Sum_probs=50.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++..+..++..+..    .+.+ +.+|.|+.|..     
T Consensus        66 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~-----  136 (183)
T 3kkq_A           66 AILDVLDTAGQEEFSAM-REQYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLM-----  136 (183)
T ss_dssp             EEEEEEECCSCGGGCSS-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCS-----
T ss_pred             EEEEEEECCCchhhHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCch-----
Confidence            55677999963211111 11112  35888888887654 566666666666543    3444 56889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+   ..+..+++.+.++.+++
T Consensus       137 ~~~~v---~~~~~~~~~~~~~~~~~  158 (183)
T 3kkq_A          137 HLRKV---TRDQGKEMATKYNIPYI  158 (183)
T ss_dssp             TTCCS---CHHHHHHHHHHHTCCEE
T ss_pred             hccCc---CHHHHHHHHHHhCCeEE
Confidence            11122   23456677777777665

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.059  Score=43.87  Aligned_cols=89  Identities=13%  Similarity=0.171  Sum_probs=51.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|+|.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        62 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~  133 (223)
T 3cpj_B           62 IKAQIWDTAGQERYRAI-TSAYY--RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-----HL  133 (223)
T ss_dssp             EEEEEECCTTTTTTTCC-CGGGT--TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-----GG
T ss_pred             EEEEEEECCCccchhhh-HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cc
Confidence            67899999964321100 11112  57898998887654 66777777777776542  22466888999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.   .+...++.+..+++++
T Consensus       134 ~~v~---~~~~~~~~~~~~~~~~  153 (223)
T 3cpj_B          134 RAVP---TEESKTFAQENQLLFT  153 (223)
T ss_dssp             CCSC---HHHHHHHHHHTTCEEE
T ss_pred             cccC---HHHHHHHHHHcCCEEE
Confidence            1111   2345566666676554

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=95.83  E-value=0.033  Score=44.82  Aligned_cols=46  Identities=20%  Similarity=0.062  Sum_probs=33.0

Q ss_pred             hhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        41 ~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +....++..+.|+.|.-|+||||-....+..+.  ..+++|+++....
T Consensus        13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~--~~~~kvl~~kp~~   58 (195)
T 1w4r_A           13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAK   58 (195)
T ss_dssp             ------CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEETT
T ss_pred             ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEcccc
Confidence            334444556888889999999988888888777  7899999997543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.81  E-value=0.039  Score=42.40  Aligned_cols=66  Identities=17%  Similarity=0.034  Sum_probs=41.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++......+..+...   ....+.+|.|+.|.
T Consensus        51 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  120 (171)
T 1upt_A           51 LKFQVWDLGGLTSIRP-YWRCYY--SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM  120 (171)
T ss_dssp             EEEEEEEECCCGGGGG-GGGGGC--TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEEEEECCCChhhhH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence            7889999996432111 111122  57899999987654 4666666666655432   22346789999884

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.81  E-value=0.025  Score=59.52  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.|...+.   -....+..+.|..|+||||++.++|...+  ..|.+|+++|++...
T Consensus       365 sTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~  423 (1706)
T 3cmw_A          365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL  423 (1706)
T ss_dssp             CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCC
T ss_pred             ccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCch
Confidence            355677887776   34566788889999999999999999999  789999999998754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.80  E-value=0.0088  Score=48.66  Aligned_cols=50  Identities=28%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             HHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        37 ~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.-|..+......+.++.|..|+||||++..|+..|. ...|.++.++|.|
T Consensus        14 ~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d   63 (211)
T 1m7g_A           14 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGD   63 (211)
T ss_dssp             HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHH
T ss_pred             HHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECCh
Confidence            3344455555555666668899999999999999986 1357788888855

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.79  E-value=0.013  Score=47.25  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ..+.++.|-.|+||||++..|+..+.  ..| +|...+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g-~~~~~~~   39 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE--LKR-DVYLTEW   39 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT--TTS-CEEEEET
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh--hcC-CEEEecC
Confidence            45666778899999999999999999  677 7755443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.78  E-value=0.013  Score=55.46  Aligned_cols=40  Identities=30%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..+++ -|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus       369 G~~~~i-vG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~  408 (582)
T 3b5x_A          369 GKTVAL-VGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVR  408 (582)
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhh
Confidence            344444 48899999999999999998  77788888666553

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.77  E-value=0.0099  Score=48.17  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=29.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +.+|+ +.|..|+||||++..|+..+.  .   ++.+++.|..
T Consensus         6 ~~~i~-i~G~~GsGKSTl~~~l~~~~~--~---~i~~v~~d~~   42 (211)
T 3asz_A            6 PFVIG-IAGGTASGKTTLAQALARTLG--E---RVALLPMDHY   42 (211)
T ss_dssp             CEEEE-EEESTTSSHHHHHHHHHHHHG--G---GEEEEEGGGC
T ss_pred             cEEEE-EECCCCCCHHHHHHHHHHHhC--C---CeEEEecCcc
Confidence            34445 457889999999999999988  4   7889988864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.73  E-value=0.014  Score=45.79  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ....+.+.+........++.|..|+||||++..++..+.
T Consensus        30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            345555555554444557789999999999999999998

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.71  E-value=0.16  Score=39.88  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+++.....   ..     ..+|.++++.+.+. .++..+..++..+...    +.+ +.+|.|+.|...   .
T Consensus        67 ~~l~i~Dt~G~~~~~---~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~---~  134 (184)
T 3ihw_A           67 YLLLIRDEGGPPELQ---FA-----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISA---A  134 (184)
T ss_dssp             EEEEEEECSSSCCHH---HH-----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBT---T
T ss_pred             EEEEEEECCCChhhh---ee-----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc---c
Confidence            678889999654422   22     35788888876654 6677777788887654    333 568889987420   0


Q ss_pred             CCCccCCCCchhHHHHHhhcC-Ccee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELS-VPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g-~~~l  259 (294)
                      ....+   ..+...++.+.++ .+++
T Consensus       135 ~~~~v---~~~~~~~~~~~~~~~~~~  157 (184)
T 3ihw_A          135 NPRVI---DDSRARKLSTDLKRCTYY  157 (184)
T ss_dssp             BCCCS---CHHHHHHHHHHTTTCEEE
T ss_pred             ccccc---CHHHHHHHHHHcCCCeEE
Confidence            01111   2344566666665 4444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.71  E-value=0.0077  Score=47.60  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ..+.++.|..|+||||++..++..+. ...|.+|++++.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~~~~~~   75 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRGYFFDT   75 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCCCEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeEEEEEH
Confidence            45566679999999999999999986 135777777654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.71  E-value=0.041  Score=46.32  Aligned_cols=89  Identities=13%  Similarity=-0.036  Sum_probs=52.5

Q ss_pred             ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+.....     .......+....+|.+++|++.+..  .....+...+.+.+.+ +.+++||+|..     
T Consensus        52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~-----  123 (258)
T 3a1s_A           52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEA-----  123 (258)
T ss_dssp             EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHH-----
T ss_pred             eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCC-----
Confidence            789999999643211     1111122222478999999887653  2333455666666777 56899999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCceee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFLG  260 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l~  260 (294)
                      ....+.    ...+++.+.+|++++.
T Consensus       124 ~~~~i~----~~~~~l~~~lg~~vi~  145 (258)
T 3a1s_A          124 KKTGMK----IDRYELQKHLGIPVVF  145 (258)
T ss_dssp             HHTTCC----BCHHHHHHHHCSCEEE
T ss_pred             CccchH----HHHHHHHHHcCCCEEE
Confidence            111221    1256677777877764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.70  E-value=0.0069  Score=55.58  Aligned_cols=66  Identities=12%  Similarity=-0.028  Sum_probs=37.9

Q ss_pred             ccEEEEcCCCCC------ChHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGT------SDEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~------~~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+-.      ...... ....+  ..+|.+|++++....-...-..+.+.+++.+.+ +.+|+|+++.
T Consensus        71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~  143 (456)
T 4dcu_A           71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN  143 (456)
T ss_dssp             SCCEEECCCC------CCHHHHHHHHHHHH--HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred             ceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence            678999999622      111111 11222  468989988876542223334566666666666 5588999884

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.69  E-value=0.011  Score=47.83  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .+.++.|-.|+||||++..|+..|.  ..+.+|..+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~--~~~~~v~~~~   44 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALC--AAGHRAELLR   44 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEee
Confidence            4555667889999999999999999  7888885554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.69  E-value=0.04  Score=44.09  Aligned_cols=65  Identities=20%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH-HHHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV-RKEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~-~~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|++.+.+. .++... ..++..+...  +.+ +.+|.|++|.
T Consensus        73 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  141 (201)
T 2gco_A           73 VELALWDTAGQEDYDRL-RPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL  141 (201)
T ss_dssp             EEEEEECCCCSGGGTTT-GGGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred             EEEEEEECCCchhHHHH-HHHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence            68899999964221100 11112  57899998876554 566666 5666666654  445 5699999984

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.66  E-value=0.0057  Score=51.93  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=24.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      +..+-|.+|+||||+...|+..+.  . ..+|.+-+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~p--~-~G~I~~~g   64 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLLP--Y-SGNIFING   64 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC--C-EEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--C-CcEEEECC
Confidence            445558899999999999998774  3 34566543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.65  E-value=0.015  Score=50.70  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...|..+.|.+|+||||++..|+..+.....+.+|.++..|..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            3446666699999999999999999872124678999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.64  E-value=0.13  Score=40.49  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKC  233 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~  233 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++..+..++..+...     +.+ +.+|.|+.|..    
T Consensus        56 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~----  127 (199)
T 2gf0_A           56 CTLQITDTTGSHQFPAM-QRLSI--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET----  127 (199)
T ss_dssp             EEEEEEECCGGGSCHHH-HHHHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS----
T ss_pred             EEEEEEeCCChHHhHHH-HHHhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC----
Confidence            68999999964332211 11222  36888888887654 5666666665555432     344 67899999842    


Q ss_pred             CCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        234 TKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                        ..++   .......+.+.++.+++
T Consensus       128 --~~~~---~~~~~~~~~~~~~~~~~  148 (199)
T 2gf0_A          128 --QREV---DTREAQAVAQEWKCAFM  148 (199)
T ss_dssp             --SCSS---CHHHHHHHHHHHTCEEE
T ss_pred             --cccc---CHHHHHHHHHHhCCeEE
Confidence              1111   13345566666676555

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.61  E-value=0.054  Score=42.91  Aligned_cols=65  Identities=14%  Similarity=0.222  Sum_probs=41.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+......+ ....+  ..+|.++++.+.+. .++......+..+..    .+.+ +.+|.|+.|.
T Consensus        67 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  136 (190)
T 1m2o_B           67 IKFTTFDLGGHIQARRL-WKDYF--PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDA  136 (190)
T ss_dssp             EEEEEEECCCSGGGTTS-GGGGC--TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred             EEEEEEECCCCHHHHHH-HHHHH--hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCC
Confidence            67889999954321110 11112  57899999988765 567777777766643    2344 6789999884

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.61  E-value=0.19  Score=39.12  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+......+ ....+  ..+|.++++.+.+. .++.....++..+...    +.+ +.+|.|+.|..     
T Consensus        52 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~-----  122 (189)
T 4dsu_A           52 CLLDILDTAGQEEYSAM-RDQYM--RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLP-----  122 (189)
T ss_dssp             EEEEEEECCCC---CTT-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSS-----
T ss_pred             EEEEEEECCCcHHHHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCc-----
Confidence            66888999963321111 11112  35788887776654 5666666666666542    334 66889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ...   ...+..+++.+..+.+++
T Consensus       123 -~~~---~~~~~~~~~~~~~~~~~~  143 (189)
T 4dsu_A          123 -SRT---VDTKQAQDLARSYGIPFI  143 (189)
T ss_dssp             -SCS---SCHHHHHHHHHHHTCCEE
T ss_pred             -ccc---cCHHHHHHHHHHcCCeEE
Confidence             111   123456677777777665

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.56  E-value=0.023  Score=50.09  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             CcChHHHHhhhc--cCceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLS--NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~--~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~   89 (294)
                      ....+.|...+.  -....+..+.|..|+||||++.++|....  .      .+.+|+++|++..
T Consensus       105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~--~~~~~gg~~~~vlyi~~E~~  167 (343)
T 1v5w_A          105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ--LPGAGGYPGGKIIFIDTENT  167 (343)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT--SCBTTTBCCCEEEEEESSSC
T ss_pred             ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCeEEEEECCCC
Confidence            345667777764  23566788889999999999999999865  4      5789999999763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.53  E-value=0.014  Score=54.19  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=42.1

Q ss_pred             ChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347         35 GIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC   89 (294)
Q Consensus        35 ~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~   89 (294)
                      .++.|...+.. ....+.++.|..|+||||++.++|..++  .. |.+|+++++...
T Consensus       228 G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          228 GCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEES  282 (503)
T ss_dssp             SCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSC
T ss_pred             chhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCC
Confidence            34555555543 3456788889999999999999999999  66 899999999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.52  E-value=0.011  Score=46.92  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .++..+.++.|..|+||||++..|+..+.       ..++|.|
T Consensus         3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d   38 (194)
T 1qf9_A            3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAG   38 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHH
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHH
Confidence            33444556668899999999999988776       2456664

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.50  E-value=0.0084  Score=46.81  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=25.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ||+.|++. |-.|+||||++..||..|.  .     .++|.|
T Consensus         1 m~~~I~l~-G~~GsGKsT~a~~La~~lg--~-----~~id~d   34 (173)
T 1e6c_A            1 MTEPIFMV-GARGCGMTTVGRELARALG--Y-----EFVDTD   34 (173)
T ss_dssp             CCCCEEEE-SCTTSSHHHHHHHHHHHHT--C-----EEEEHH
T ss_pred             CCceEEEE-CCCCCCHHHHHHHHHHHhC--C-----cEEccc
Confidence            34555554 7789999999999999877  2     366765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=95.49  E-value=0.11  Score=48.47  Aligned_cols=86  Identities=9%  Similarity=-0.040  Sum_probs=49.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPS  237 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~  237 (294)
                      +.+.|+|+|+.-....+ ....+  ..+|.+|+|.+.+..  .....++..+...+  .+ +.+|.|++|..     ...
T Consensus        98 ~~~~i~Dt~G~e~~~~~-~~~~l--~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~-----~~~  166 (535)
T 3dpu_A           98 CLFHFWDFGGQEIMHAS-HQFFM--TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDEN-----PSY  166 (535)
T ss_dssp             CEEEEECCCSCCTTTTT-CHHHH--HSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTC-----TTC
T ss_pred             EEEEEEECCcHHHHHHH-HHHHc--cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcc-----ccc
Confidence            78999999963211111 11112  368989999876543  45566677776544  45 56899999842     112


Q ss_pred             ccCCCCchhHHHHHhhcCCcee
Q psy11347        238 EIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       238 ~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ++.   .+..++..+..+.+++
T Consensus       167 ~v~---~~~~~~~~~~~~~~~~  185 (535)
T 3dpu_A          167 NIE---QKKINERFPAIENRFH  185 (535)
T ss_dssp             CCC---HHHHHHHCGGGTTCEE
T ss_pred             ccC---HHHHHHHHHhcCCceE
Confidence            221   2345555556666554

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.49  E-value=0.047  Score=58.34  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...++.+.+.+.   -....+.++.|..|+||||++.++|..++  ..+.+|+++++....
T Consensus       714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a--~~g~~VlyiS~Ees~  772 (2050)
T 3cmu_A          714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL  772 (2050)
T ss_dssp             CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCC
T ss_pred             ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECCCcH
Confidence            355677777775   34667788889999999999999999999  788999999997644

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.49  E-value=0.014  Score=51.04  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~~   89 (294)
                      ...+.|...+..  ....+..+.|..|+||||++.++|...+  ..      +.+|+++|++..
T Consensus        91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~--~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A           91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSSC
T ss_pred             CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh--cccccCCCCCeEEEEECCCC
Confidence            455677766642  2455777779999999999999999877  55      789999999764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.47  E-value=0.012  Score=48.79  Aligned_cols=55  Identities=20%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++.|.+.+..  ....+.++.|..|+|||+++.++|...+ ...+.+|+++.++..
T Consensus        14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEER   70 (251)
T ss_dssp             CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred             CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccCC
Confidence            445666666642  3566888889999999999999987644 156889999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.47  E-value=0.014  Score=54.74  Aligned_cols=38  Identities=34%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|..|+||||++..|+..|.  ..|.++.++|.|.
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~--~~G~~~~~ld~D~  410 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQ--ARGRKVTLLDGDV  410 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECHHH
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhh--hcCCeEEEECchH
Confidence            4555568899999999999999999  7899999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.46  E-value=0.014  Score=53.43  Aligned_cols=54  Identities=19%  Similarity=0.415  Sum_probs=42.3

Q ss_pred             cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~   89 (294)
                      ..++.|...+.. ....+.++.|..|+||||++.++|..++  . .|.+|+++++...
T Consensus       188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMS  243 (454)
T ss_dssp             CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSC
T ss_pred             CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence            445566655543 3456788889999999999999999998  4 5889999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.46  E-value=0.015  Score=51.14  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      |+.+.++.|..|+||||++..||..+.       +.+|++|-.
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~-------~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN-------GEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT-------EEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC-------Cceeccccc
Confidence            345677779999999999999998765       578888853

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.45  E-value=0.13  Score=40.31  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=41.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+..... ......+  ..+|.++++.+.+. .++..+...+..+..    .+.+ +.+|.|+.|.
T Consensus        60 ~~l~i~Dt~G~~~~~-~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  129 (181)
T 1fzq_A           60 FKLNVWDIGGQRKIR-PYWRSYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDL  129 (181)
T ss_dssp             EEEEEEECSSCGGGH-HHHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred             EEEEEEECCCCHHHH-HHHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence            788999999643221 1122233  57999999987654 567777666665532    2344 6789999884

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.41  E-value=0.03  Score=51.29  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             ccEEEEcCCCC---------CCh-HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPG---------TSD-EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~---------~~~-~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+-         ... .....+..+  ..+|.+|++++...........++..+.+.+.+ +.+|+|++|.
T Consensus       243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~--~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl  318 (456)
T 4dcu_A          243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI--DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDA  318 (456)
T ss_dssp             EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH--HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGG
T ss_pred             ceEEEEECCCCCcCcccchHHHHHHHHHHHHHH--hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhc
Confidence            57889999862         111 112222233  468988888887664445556677777776655 5688999984

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.35  E-value=0.021  Score=48.51  Aligned_cols=39  Identities=31%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCC----------CCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE----------SVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~----------g~~VlliD~D~   88 (294)
                      ..+..+.|.+|+||||++..++..++  ..          +.+|++++...
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~   78 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAED   78 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCC
Confidence            44666679999999999999999887  42          46788887754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.31  E-value=0.0096  Score=46.78  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |+.|+ +.|..|+||||++..||..+.       ..++|.|.
T Consensus         4 m~~i~-i~G~~GsGKsTla~~La~~l~-------~~~~d~d~   37 (175)
T 1via_A            4 AKNIV-FIGFMGSGKSTLARALAKDLD-------LVFLDSDF   37 (175)
T ss_dssp             -CCEE-EECCTTSCHHHHHHHHHHHHT-------CEEEEHHH
T ss_pred             CCEEE-EEcCCCCCHHHHHHHHHHHcC-------CCEEcccH
Confidence            34444 458899999999999998877       24677653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.28  E-value=0.019  Score=45.50  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      +.++.|..|+||||++..|+..+.  ..|..|+-.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~--~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK--QKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEe
Confidence            345568889999999999999998  6788876554

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.27  E-value=0.027  Score=46.14  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      |...+.++-|-.|+||||++..|+..|.  ..|.+|....
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~   41 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTR   41 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCccccc
Confidence            4455667778999999999999999999  8999997664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.25  E-value=0.058  Score=49.10  Aligned_cols=65  Identities=17%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             ccEEEEcCCCCCC-------hHHH-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTS-------DEHL-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~-------~~~~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ..+.|+|||+-..       .... ....++  ..+|.+|+|++....--..-..+.+.+++.+.+ +.+|+|++|
T Consensus        49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D  121 (439)
T 1mky_A           49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAE  121 (439)
T ss_dssp             EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCC
T ss_pred             eEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence            5678899986332       1111 122233  578988888876431111112334445555666 458889987

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.22  E-value=0.0093  Score=52.88  Aligned_cols=66  Identities=17%  Similarity=0.057  Sum_probs=38.3

Q ss_pred             ccEEEEcCCCCCCh-----------H-HHHHHHHhhcCCCcEEEEecCCch--hhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347        160 LEYLLIDTPPGTSD-----------E-HLSLVQYLKGLPDIGAIVVTTPQE--VSLLDVRKEIDFCRKVNIPIIGVVENM  225 (294)
Q Consensus       160 yd~IiiD~p~~~~~-----------~-~~~~~~~l~~~~ad~vliv~~~~~--~s~~~~~~~l~~l~~~~~~~~~vvvN~  225 (294)
                      +++.|+|+|+-...           . ...+...+  ..+|.+|+++++..  ........+++.+...+.+ ..+|+|+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK  212 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK  212 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence            68999999963321           0 11122223  47887777765432  2223445555555555556 5588999


Q ss_pred             ccc
Q psy11347        226 ATF  228 (294)
Q Consensus       226 ~~~  228 (294)
                      +|.
T Consensus       213 ~Dl  215 (360)
T 3t34_A          213 IDL  215 (360)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            985

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=95.21  E-value=0.024  Score=53.03  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             CceEEEEE-ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVL-SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~-s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |+|.|.|. +.-+|+|||++++.|++.|.  .+|++|..+-.||.-
T Consensus        11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~--~~g~~v~~~k~~py~   54 (550)
T 1vco_A           11 PRKYVFITGGVVSSLGKGILTSSLGALLR--ARGYRVTAIKIDPYV   54 (550)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECSS
T ss_pred             ceeEEEEeCCcccCcchHHHHHHHHHHHH--hCCceeeEeeccccc
Confidence            57889999 88889999999999999999  999999999998653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.20  E-value=0.012  Score=47.28  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=26.6

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..++++| ++.|-.|+||||++..|+..+.       ..++|.|.
T Consensus        14 m~~~~~~I-~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~   51 (202)
T 3t61_A           14 VRRFPGSI-VVMGVSGSGKSSVGEAIAEACG-------YPFIEGDA   51 (202)
T ss_dssp             -CCCSSCE-EEECSTTSCHHHHHHHHHHHHT-------CCEEEGGG
T ss_pred             cCCCCeEE-EEECCCCCCHHHHHHHHHHHhC-------CEEEeCCc
Confidence            33444444 5558899999999999998875       23666664

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.20  E-value=0.21  Score=40.51  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=40.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~  228 (294)
                      +.++++|+++.... . ..+.......+|.+|+|.+.+ ..++..+..+...+.+.    +.+ +.+|.|+.|.
T Consensus        87 ~~l~~~Dt~g~~~~-~-~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL  157 (211)
T 2g3y_A           87 ATIILLDMWENKGE-N-EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDL  157 (211)
T ss_dssp             EEEEEECCTTTTHH-H-HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred             eEEEEeecCCCcch-h-hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence            67788999853321 1 122222224578777776654 46777777777666542    344 6688999984

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.19  E-value=0.056  Score=43.86  Aligned_cols=65  Identities=20%  Similarity=0.155  Sum_probs=41.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.-.... .....+  ..+|.++++.+.+. .++..+..++..+...  +.+ +.+|.|++|.
T Consensus        64 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  131 (221)
T 3gj0_A           64 IKFNVWDTAGQEKFGG-LRDGYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDI  131 (221)
T ss_dssp             EEEEEEEECSGGGTSC-CCHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred             EEEEEEeCCChHHHhH-HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcc
Confidence            7889999995321100 011122  57899998887655 5666677777777553  444 5688999985

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.15  E-value=0.022  Score=46.98  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=39.0

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC----CCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN----ESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~----~g~~VlliD~D~   88 (294)
                      ..++.|...+..  ....+..+.|.+|+||||++..++.......    .+.+|++++...
T Consensus         8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A            8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            445666666643  2345666668999999999999999754001    367899999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.11  E-value=0.016  Score=45.84  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=24.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++.|+ +.|-.|+||||++..||..+.  .     .++|.|.
T Consensus         5 ~~~i~-l~G~~GsGKst~a~~La~~l~--~-----~~i~~d~   38 (185)
T 3trf_A            5 LTNIY-LIGLMGAGKTSVGSQLAKLTK--R-----ILYDSDK   38 (185)
T ss_dssp             CCEEE-EECSTTSSHHHHHHHHHHHHC--C-----CEEEHHH
T ss_pred             CCEEE-EECCCCCCHHHHHHHHHHHhC--C-----CEEEChH
Confidence            45555 457799999999999998876  2     3566653

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.11  E-value=0.023  Score=54.06  Aligned_cols=53  Identities=21%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             cChHHHHhhhcc----CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN----VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~----~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.+.-|..+..    +...+.++.|-.|+||||++..|+..|.  ..|..+..+|.|.
T Consensus        34 ~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~--~~G~~~v~lDgD~   90 (630)
T 1x6v_B           34 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDN   90 (630)
T ss_dssp             CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEESHHH
T ss_pred             CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEechHH
Confidence            444555555433    2555667778899999999999999998  7899999888764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.09  E-value=0.01  Score=50.43  Aligned_cols=37  Identities=30%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D   87 (294)
                      .+..+-|.+|+||||+...|+..+  .  ....+|.+-+.|
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~   85 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGREDYE--VTGGTVEFKGKD   85 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEE
Confidence            345555899999999999999974  3  334567664444

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.08  E-value=0.0091  Score=54.44  Aligned_cols=66  Identities=12%  Similarity=-0.026  Sum_probs=35.2

Q ss_pred             ccEEEEcCCCCCC------hHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTS------DEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~------~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .++.|+|+|+-..      ..... ...++  ..+|.+|++++.....-..-..+.+.+++.+.+ +.+|+|++|.
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~  123 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN  123 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence            6789999996431      11111 12223  468989988876542111223455556666665 5689999984

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.06  E-value=0.044  Score=43.75  Aligned_cols=65  Identities=14%  Similarity=0.031  Sum_probs=39.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-------CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-------NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-------~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+...       +.+ +.+|.|+.|.
T Consensus        57 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  129 (207)
T 1vg8_A           57 VTMQIWDTAGQERFQS-LGVAFY--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL  129 (207)
T ss_dssp             EEEEEEEECSSGGGSC-SCCGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred             EEEEEEeCCCcHHHHH-hHHHHH--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence            7899999996321100 011112  57899999987644 5666666666655432       333 6789999984

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.04  E-value=0.018  Score=54.40  Aligned_cols=52  Identities=17%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             ChHHHHhhh--ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCC
Q psy11347         35 GIELVKSHL--SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDI   88 (294)
Q Consensus        35 ~~~~i~~~~--~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~   88 (294)
                      +.+.+|+.+  ......+.++.|-.|+||||++..|+..|.  ..| .++.++|.|.
T Consensus       381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~--~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN--QQGGRSVSLLLGDT  435 (573)
T ss_dssp             HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH--HHCSSCEEEEEHHH
T ss_pred             ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc--ccCCceEEEECcHH
Confidence            334445444  222335566668899999999999999999  667 8899998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.00  E-value=0.018  Score=49.40  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+...+.+++|..|+||||++..|+..+.  .   ....|+.|.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~---~~~~Is~D~   68 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--G---NVIVIDNDT   68 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--T---CCEEECTHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--C---CeEEEechH
Confidence            34567888999999999999999987664  2   356677753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=94.98  E-value=0.042  Score=54.32  Aligned_cols=66  Identities=21%  Similarity=0.088  Sum_probs=44.6

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ++.+.|+|+|+..... ......+  ..+|.+|+|++............+..+...+++. .+++|++|.
T Consensus        97 ~~~i~liDTPG~~df~-~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~  162 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFS-SEVTAAL--RVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDR  162 (842)
T ss_dssp             EEEEEEECCCCCCSSC-HHHHHHH--HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHH
T ss_pred             CceEEEEECcCchhhH-HHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCc
Confidence            3889999999754321 2233334  5799999999887654444455566666667764 589999984

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.97  E-value=0.015  Score=47.11  Aligned_cols=34  Identities=35%  Similarity=0.431  Sum_probs=24.5

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.+..+...+.+++|..|+||||+...|+..+.
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4456666667778889999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.95  E-value=0.07  Score=42.59  Aligned_cols=65  Identities=18%  Similarity=0.254  Sum_probs=40.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~  228 (294)
                      +++.++|+|+......+ ....+  ..+|.++++.+.+. .++..+...+..+.+.    +.+ +.+|.|+.|.
T Consensus        69 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  138 (198)
T 1f6b_A           69 MTFTTFDLGGHIQARRV-WKNYL--PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR  138 (198)
T ss_dssp             EEEEEEEECC----CCG-GGGGG--GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred             EEEEEEECCCcHhhHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence            67889999863211100 11112  46899999988654 5677777777666432    344 6789999883

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.94  E-value=0.036  Score=48.80  Aligned_cols=64  Identities=11%  Similarity=-0.025  Sum_probs=42.4

Q ss_pred             ccEEEEcCCCC---------CChHHHHHHHHhhcCCCcEEEEecCCc----hhhHHHHHHHHHHHHhcC----CCeeEEE
Q psy11347        160 LEYLLIDTPPG---------TSDEHLSLVQYLKGLPDIGAIVVTTPQ----EVSLLDVRKEIDFCRKVN----IPIIGVV  222 (294)
Q Consensus       160 yd~IiiD~p~~---------~~~~~~~~~~~l~~~~ad~vliv~~~~----~~s~~~~~~~l~~l~~~~----~~~~~vv  222 (294)
                      +.++|+|+|+-         +...+   +..+  ..+|.+|+|++.+    ..++.....++..+....    -....+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~f---l~~i--~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV  280 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQF---LRHI--ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV  280 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHH---HHHH--HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred             ceEEEecCCCCcccccccchhHHHH---HHHH--HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence            57899999851         22222   2222  3589899998876    367777777888887642    2236789


Q ss_pred             eccccc
Q psy11347        223 ENMATF  228 (294)
Q Consensus       223 vN~~~~  228 (294)
                      +|++|.
T Consensus       281 ~NK~Dl  286 (342)
T 1lnz_A          281 ANKMDM  286 (342)
T ss_dssp             EECTTS
T ss_pred             EECccC
Confidence            999883

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.91  E-value=0.02  Score=45.40  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +..+.++.|..|+||||++..|+..+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445666778999999999999998776

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=94.89  E-value=0.033  Score=51.94  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             ceEEEEE-ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVL-SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~-s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +|.|.|. +.-+|+|||++++.|++.|+  .+|++|..+..||.
T Consensus         3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~--~~g~~v~~~k~~py   44 (545)
T 1s1m_A            3 TNYIFVTGGVVSSLGKGIAAASLAAILE--ARGLNVTIMKLDPY   44 (545)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECC
T ss_pred             ceEEEEeCCcccCcchHHHHHHHHHHHH--hCCceeeeeecccc
Confidence            5788888 88889999999999999999  99999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.88  E-value=0.034  Score=48.16  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+.|..|+||||++..|+..+.....+.+|.++++|..
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            44555588999999999999998761124668999988854

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.84  E-value=0.029  Score=45.22  Aligned_cols=35  Identities=40%  Similarity=0.503  Sum_probs=28.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .+.++.|-.|+||||++..|+..+.  ..+.++.++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~   45 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEVKHLY   45 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEe
Confidence            4556668889999999999999998  7788885544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.83  E-value=0.021  Score=47.87  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ....+.++.|..|+||||++..|+..+.  .   .+.++|.|.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~--~---~~~~~~~D~   67 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ--G---NIVIIDGDS   67 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT--T---CCEEECGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC--C---CcEEEecHH
Confidence            3456777789999999999999998765  2   456778875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.82  E-value=0.047  Score=44.46  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~   88 (294)
                      ..++.|...+..  ....+..+.|.+|+||||++..|+..+.  .      .+.++++++...
T Consensus         9 tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~--~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A            9 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             CSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSS
T ss_pred             CCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCEEEEEECCC
Confidence            345566655532  2445666679999999999999999776  4      366788888754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=94.81  E-value=0.048  Score=49.57  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++.+......+...+..+...+.+.+.+++|++|.
T Consensus       104 ~~~~iiDtpGh~~-f~~~~~~~~--~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          104 RKFIIADTPGHEQ-YTRNMATGA--STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             EEEEEEECCCSGG-GHHHHHHHH--TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             ceEEEEECCChHH-HHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence            7899999996433 222333344  68999999998876555566666777777787767789999984

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.81  E-value=0.022  Score=53.12  Aligned_cols=40  Identities=25%  Similarity=0.309  Sum_probs=34.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++.+.++.|-.|+||||++..||..|.  ..+.++.+++.|.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~--~~~~d~~v~s~D~   73 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN--WIGVPTKVFNVGE   73 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEecccH
Confidence            556677779999999999999999998  7888998888874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.80  E-value=0.16  Score=40.59  Aligned_cols=65  Identities=20%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH-HHHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV-RKEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~-~~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|++.+.+. .++..+ ..++..+...  +.+ +.+|.|+.|.
T Consensus        73 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  141 (207)
T 2fv8_A           73 VELALWDTAGQEDYDRL-RPLSY--PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDL  141 (207)
T ss_dssp             EEEEEEECTTCTTCTTT-GGGGC--TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred             EEEEEEECCCcHHHHHH-HHhhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence            68899999964321111 11112  57899998887654 566666 4566666554  445 5689999984

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.78  E-value=0.015  Score=45.33  Aligned_cols=31  Identities=39%  Similarity=0.437  Sum_probs=23.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.++.|..|+||||++..||..+.  .     .++|.|
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~--~-----~~id~d   36 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLN--M-----EFYDSD   36 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT--C-----EEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--C-----CEEecc
Confidence            344558899999999999998877  3     466765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.72  E-value=0.012  Score=47.74  Aligned_cols=35  Identities=23%  Similarity=0.440  Sum_probs=29.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +.++.|..|+||||++..|+..|.  ..|.+|.++..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~--~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR--AAGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH--EEEEEEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEee
Confidence            345568889999999999999999  77888887753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.69  E-value=0.012  Score=61.02  Aligned_cols=45  Identities=22%  Similarity=0.262  Sum_probs=35.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP   94 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~   94 (294)
                      +..++++ |+.|+||||++..|.+.+.  ....+|++-+.|...-++.
T Consensus      1105 Ge~vaIV-G~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A         1105 GQTLALV-GPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp             TCEEEEE-CSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHH
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHH
Confidence            5667777 8899999999999999998  7788898877776544433

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.68  E-value=0.023  Score=44.44  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.+.++.|..|+||||++..|+.. .   .  ...+++.|
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~-~---~--~~~~i~~d   35 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK-N---P--GFYNINRD   35 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH-S---T--TEEEECHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh-c---C--CcEEecHH
Confidence            456677799999999999998872 1   2  35566664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.65  E-value=0.11  Score=43.31  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=16.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHH
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA   69 (294)
                      ..|+++ |..|+||||+...|.
T Consensus        23 ~~I~lv-G~~g~GKStl~n~l~   43 (260)
T 2xtp_A           23 LRIILV-GKTGTGKSAAGNSIL   43 (260)
T ss_dssp             EEEEEE-ECTTSCHHHHHHHHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHh
Confidence            445555 789999999987765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.64  E-value=0.035  Score=43.38  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=25.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+.++.|..|+||||++..|+..+.       ..++|.|.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g-------~~~i~~d~   41 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLH-------AAFLDGDF   41 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT-------CEEEEGGG
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhC-------cEEEeCcc
Confidence            34556668999999999999988765       34667764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.64  E-value=0.17  Score=43.21  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=25.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCC----cEEEEe
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV----DVGVLD   85 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~----~VlliD   85 (294)
                      -.++.|..|+|||+++..+|..+.  ..+.    .++.++
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~  106 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLLH--RLGYVRKGHLVSVT  106 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH--HTTSSSSCCEEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--hcCCcCCCcEEEEc
Confidence            456668899999999999999998  4443    454444

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.62  E-value=0.044  Score=50.92  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=31.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcC-C-CCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSN-E-SVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~-~-g~~VlliD~D~   88 (294)
                      .+.++.|-.|+||||++..||..|.  . . +..+-++|.|.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~--~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFL--QFGGGRYYKIFEHNN  435 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHT--TSCSCCCEEECCCTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHH--HhhcCcceEEecCCC
Confidence            4556678889999999999999999  5 5 47778999886

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.53  E-value=0.039  Score=51.80  Aligned_cols=39  Identities=36%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~   88 (294)
                      ..+.++.|..|+||||++..||..+.  ..+ .++.++|.|.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDI  408 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcH
Confidence            34555568899999999999999998  555 4788888764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.53  E-value=0.013  Score=46.25  Aligned_cols=31  Identities=48%  Similarity=0.659  Sum_probs=24.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .++.|..|+||||++..||..|.  .     .++|.|.
T Consensus         5 I~l~G~~GsGKsT~a~~La~~lg--~-----~~id~D~   35 (184)
T 2iyv_A            5 AVLVGLPGSGKSTIGRRLAKALG--V-----GLLDTDV   35 (184)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT--C-----CEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--C-----CEEeCch
Confidence            44558899999999999999877  2     2677763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.48  E-value=0.029  Score=48.25  Aligned_cols=40  Identities=20%  Similarity=0.110  Sum_probs=30.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC--CcEEEE-ecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES--VDVGVL-DLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g--~~Vlli-D~D~   88 (294)
                      ...+..+.|..|+||||++..|+..+.  ..|  .++..+ ..|.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~--~~g~~~~~~~iv~~D~   72 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM--EKYGGEKSIGYASIDD   72 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH--HHHGGGSCEEEEEGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh--hcCCCCceEEEecccc
Confidence            455666669999999999999999998  443  344444 7775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.46  E-value=0.026  Score=45.41  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+.++.|..|+||||++..|+..+.       ..++|.|.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g-------~~~i~~d~   62 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETG-------LEFAEADA   62 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHC-------CEEEEGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC-------CeEEcccc
Confidence            34556669999999999999998774       24566654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.45  E-value=0.046  Score=51.18  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=25.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~  327 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT--ADEGSVTP  327 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC--CSBCCEES
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE
Confidence            444558899999999999999988  66666653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.43  E-value=0.029  Score=44.50  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=24.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+.++.|..|+||||++..||..+-    |  ..++|+|
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~----g--~~~id~d   43 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELD----G--FQHLEVG   43 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST----T--EEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcC----C--CEEeeHH
Confidence            3455668899999999999988732    2  5567776

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.40  E-value=0.037  Score=48.22  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |+.+.++.|..|+||||++..||..+.       ..++++|-
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~-------~~iis~Ds   38 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP-------CELISVDS   38 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC-------CcEEeccc
Confidence            334666778999999999999988665       56788874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.40  E-value=0.031  Score=44.89  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++....+.-.+.. ++.| ++.|..|+||||++..||..+.
T Consensus        12 ~~~~~~~~~~~~~-~~~i-~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           12 DLGTENLYFQSNA-MVRI-FLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             ------------C-CCEE-EEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCceeEecCC-CCEE-EEEcCCCCCHHHHHHHHHHHcC
Confidence            3444444434433 3444 4558899999999999998886

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.36  E-value=0.018  Score=52.43  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=27.9

Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+|.++++.+.+.........++..+...+.+ +.+|+|++|.
T Consensus       256 ~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl  298 (436)
T 2hjg_A          256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDA  298 (436)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGG
T ss_pred             HhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence            468888888877653222223566666666655 5688999984

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.36  E-value=0.1  Score=45.57  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..+|..+-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            56678999999999999999654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.36  E-value=0.025  Score=46.61  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCC
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICG   90 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~   90 (294)
                      .+...+.++.|-.|+||||++..|+..|.  . .|.+|.++--.|.+
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~--~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS--EIYGVNNVVLTREPGG   62 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCGGGEEEEESSCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hccCceeeEeeeCCCC
Confidence            33455666678899999999999999999  7 89999884455543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.35  E-value=0.035  Score=43.94  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.+.++.|-.|+||||++..|+..+.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45667778899999999999998776

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.32  E-value=0.038  Score=47.94  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=27.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |++.+.+++|..|+||||++..||..+.       .-+|.+|-
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~~~-------~~iis~Ds   36 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKRLN-------GEVISGDS   36 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHTTT-------EEEEECCG
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHhCc-------cceeecCc
Confidence            3455778889999999999999987655       35677763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.32  E-value=0.046  Score=45.50  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~   88 (294)
                      ...+..+.|..|+||||++..|+..+.  ..     ..++.+++.|.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG--~~~~~~~~~~i~~v~~d~   68 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLG--QNEVEQRQRKVVILSQDR   68 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT--GGGSCGGGCSEEEEEGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc--hhcccccCCceEEEeCCc
Confidence            334455558999999999999999876  32     45677887763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.29  E-value=0.043  Score=45.66  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc-EEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD-VGVL   84 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~-Vlli   84 (294)
                      ...+.++.|-.|+||||++..|+..|.  ..|.+ |.+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~   62 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT   62 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence            345666678889999999999999999  88998 5554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.25  E-value=0.029  Score=46.45  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             hHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCC----CCcEEEEe
Q psy11347         36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE----SVDVGVLD   85 (294)
Q Consensus        36 ~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~----g~~VlliD   85 (294)
                      .+.+..+...| ...+.++.|-.|+||||++..|+..|.  ..    |.+|.+.-
T Consensus        12 ~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~--~~~~~~g~~v~~~r   64 (227)
T 3v9p_A           12 LEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQ--ERLGPAGRHVVVTR   64 (227)
T ss_dssp             -----------CCCCEEEEECCC---CHHHHHHHHHHHH--HHHGGGTCCEEEEE
T ss_pred             HHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHH--hhccccceeeeeec
Confidence            34444444554 345667779999999999999999998  67    89987654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.13  E-value=0.049  Score=44.52  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=28.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEE
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVL   84 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~Vlli   84 (294)
                      ..+.++-|-.|+||||.+..|+..|.  ..|. .|.+.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~   38 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFT   38 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceee
Confidence            34556668889999999999999999  7887 66544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.10  E-value=0.038  Score=52.51  Aligned_cols=30  Identities=37%  Similarity=0.567  Sum_probs=23.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDV   81 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~V   81 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I  413 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKV  413 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC--CSBSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCceEE
Confidence            445558999999999999999887  544444

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.10  E-value=0.049  Score=48.74  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      -.++.|..|+||||++..++..+.  ..|.+|+++|.+..
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~~~   74 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPERE   74 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCC
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCCcC
Confidence            345668999999999999999998  88999999987643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.09  E-value=0.039  Score=46.31  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|..|+||||++..||..+.       ..+++.|.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~-------~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG-------WPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC-------CCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC-------CeEEeccH
Confidence            556678999999999999998776       23567764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.06  E-value=0.038  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=24.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|-.|+||||++..|+..+.  .     .++|.|.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~--~-----~~i~~d~   34 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK--Y-----PIIKGSS   34 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC--C-----CEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--C-----eeecCcc
Confidence            456668899999999999998876  2     3577764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.02  E-value=0.052  Score=47.15  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhh-c---------CCC----CcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAK-S---------NES----VDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~-~---------~~g----~~VlliD~D~~   89 (294)
                      ..++.|...+..  ....+..+.|..|+||||++.++|...+. .         ..|    .+|+++|++..
T Consensus        82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            456777777742  35667888899999999999999987430 0         134    79999999764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.02  E-value=0.037  Score=44.61  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+..+.|..|+||||++..|+..+.      .+.+++.|.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~~------~~~~i~~D~   55 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQDD   55 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTST------TEEEEEGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC------CcEEEeCCc
Confidence            3444557889999999888776553      478888875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.98  E-value=0.24  Score=38.91  Aligned_cols=65  Identities=12%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHH-HHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVR-KEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~-~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|+|.+.+. .++..+. .++..+...  +.+ +.+|.|+.|.
T Consensus        66 ~~~~i~D~~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  134 (194)
T 2atx_A           66 YLLGLYDTAGQEDYDRL-RPLSY--PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDL  134 (194)
T ss_dssp             EEEEEECCCCSSSSTTT-GGGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred             EEEEEEECCCCcchhHH-HHHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            67899999964321111 11112  57899999887654 5566665 566777654  444 5699999884

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=93.98  E-value=0.16  Score=46.51  Aligned_cols=66  Identities=12%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++|+|+|+... ..-.+...+  ..+|.+|++++.+.....       .+...+..+...+++.+.+++|++|.
T Consensus        85 ~~~~iiDtPGh~~-f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl  157 (458)
T 1f60_A           85 YQVTVIDAPGHRD-FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS  157 (458)
T ss_dssp             EEEEEEECCCCTT-HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred             ceEEEEECCCcHH-HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence            7899999996443 222333333  689999999998865443       55566666677788767789999984

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.97  E-value=0.061  Score=47.47  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~   88 (294)
                      ...+.|...+..  ....+..+.|..|+||||++..++..+.  ..      +.+|+++|...
T Consensus       115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~--~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTSCSCEEEEEESSS
T ss_pred             CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc--cchhcCCCCCeEEEEeCCC
Confidence            345666665542  3455666678999999999999999885  32      46889999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.91  E-value=0.56  Score=37.42  Aligned_cols=66  Identities=18%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             ccEEEEcCCCCCChHHHH-HHHHhhcCCCcEEEEecCCchh--hHHHHHHHHH-HHHh---cC-CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLS-LVQYLKGLPDIGAIVVTTPQEV--SLLDVRKEID-FCRK---VN-IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~-~~~~l~~~~ad~vliv~~~~~~--s~~~~~~~l~-~l~~---~~-~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...  ... ...... ..+|.+|++.+.+..  +.......+. .+..   .. ...+.+|.|+.|.
T Consensus        54 ~~~~i~Dt~G~~~--~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  127 (214)
T 2fh5_B           54 NSLTLIDLPGHES--LRFQLLDRFK-SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  127 (214)
T ss_dssp             CEEEEEECCCCHH--HHHHHHHHHG-GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             cEEEEEECCCChh--HHHHHHHHHH-hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence            7899999996432  111 222211 478989999887652  2333333222 2222   12 2346789999984

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.89  E-value=0.046  Score=44.60  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+|+ +.|..|+||||++..|+..+.
T Consensus         6 ~~i~-i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVIT-IDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEE-EECCCCCCHHHHHHHHHHHhC
Confidence            3444 458899999999999998775

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.86  E-value=0.039  Score=46.21  Aligned_cols=26  Identities=35%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.+|+++ |..|+||||++..||..|.
T Consensus        27 g~~I~I~-G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVD-GPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEE-CCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHhcC
Confidence            4555555 8899999999999997776

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=93.85  E-value=0.051  Score=47.12  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..++.|..|+||||++..++..+.  ..+.+++.+++.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~   74 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD   74 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH
Confidence            345568889999999999999998  668899998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.84  E-value=0.086  Score=43.48  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ..+.++-|-.|+||||++..|+..|.  . |.+|+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~--~-~~~~~~~~   60 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLV--K-DYDVIMTR   60 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT--T-TSCEEEEC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh--c-CCCceeec
Confidence            34556668889999999999999999  7 88886553

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.82  E-value=0.036  Score=43.75  Aligned_cols=26  Identities=38%  Similarity=0.514  Sum_probs=21.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.++.|.+|+||||++..|+..+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34666669999999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.81  E-value=0.033  Score=44.70  Aligned_cols=48  Identities=27%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ....|+..+........++.|..|+|||+++..++..+.  ..+.++.++
T Consensus        25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~   72 (226)
T 2chg_A           25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFI   72 (226)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEE
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceE
Confidence            344555555443322367779999999999999999987  444443333

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=93.81  E-value=0.026  Score=52.36  Aligned_cols=65  Identities=12%  Similarity=0.084  Sum_probs=42.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++++.+......+...+..+...+.+ +-+++|++|.
T Consensus        51 ~~i~~iDTPGhe~f~~-~~~~~~--~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl  115 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTS-MRARGA--QATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDK  115 (501)
T ss_dssp             SCCCEECCCTTTCCTT-SBCSSS--BSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSS
T ss_pred             EEEEEEECCCcHHHHH-HHHHHH--hhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccc
Confidence            5788999996432110 011111  478989999877664444555666677777888 6789999985

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.81  E-value=0.064  Score=46.44  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=27.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++.+.+++|..|+||||++..||..+.       .-+|.+|-
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~-------~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP-------VELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC-------CcEEeccc
Confidence            445677889999999999999988765       34677764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.79  E-value=0.037  Score=43.49  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=20.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.++.|-.|+||||++..||..+.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3455678999999999999998776

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.76  E-value=0.18  Score=44.63  Aligned_cols=66  Identities=17%  Similarity=0.122  Sum_probs=36.3

Q ss_pred             ccEEEEcCCCCCC-------hHHHHHHHHhhcCCCcEEEEecCCchhh---HHHHHHHHHHHHhc---CCCeeEEEeccc
Q psy11347        160 LEYLLIDTPPGTS-------DEHLSLVQYLKGLPDIGAIVVTTPQEVS---LLDVRKEIDFCRKV---NIPIIGVVENMA  226 (294)
Q Consensus       160 yd~IiiD~p~~~~-------~~~~~~~~~l~~~~ad~vliv~~~~~~s---~~~~~~~l~~l~~~---~~~~~~vvvN~~  226 (294)
                      .++.++|+++...       ..+..++..+  ..+|.+++|++.+...   ......+.+.+...   +.+ +.+|.|++
T Consensus       226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~--~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~  302 (364)
T 2qtf_A          226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEA--KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKI  302 (364)
T ss_dssp             EEEEEEECCCBCSSCCGGGHHHHHHHHHGG--GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred             EEEEEEeCCCchhcCCHHHHHHHHHHHHHH--HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence            4567788875422       1122333434  5689888888754322   23333334444443   334 56889998


Q ss_pred             cc
Q psy11347        227 TF  228 (294)
Q Consensus       227 ~~  228 (294)
                      +.
T Consensus       303 Dl  304 (364)
T 2qtf_A          303 DK  304 (364)
T ss_dssp             GG
T ss_pred             CC
Confidence            83

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=93.76  E-value=0.26  Score=39.63  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=36.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHH-HHHHHHHhc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVR-KEIDFCRKV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~-~~l~~l~~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+......+ ....+  ..+|.+|++.+.+ ..++..+. .++..+...  +.+ +.+|.|+.|.
T Consensus        82 ~~l~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl  150 (214)
T 2j1l_A           82 VHLHIWDTAGQDDYDRL-RPLFY--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDL  150 (214)
T ss_dssp             EEEEEEEC------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGG
T ss_pred             EEEEEEECCCchhhhHH-HHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence            67899999964321111 11112  4789899888764 35666664 566666543  344 5688999984

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.75  E-value=0.14  Score=44.13  Aligned_cols=66  Identities=14%  Similarity=-0.082  Sum_probs=39.6

Q ss_pred             ccEEEEcCCCCCChH----HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHH---hc--CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDE----HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCR---KV--NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~----~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~---~~--~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.....    .......+  ..+|.+|+|.+.+. .+...+..+.+.+.   ..  +. .+.+|.|++|.
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~-piilv~NK~Dl  127 (307)
T 3r7w_A           52 MTLNLWDCGGQDVFMENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFVLLHKMDL  127 (307)
T ss_dssp             EEEEEEEECCSHHHHHHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGGG
T ss_pred             eEEEEEECCCcHHHhhhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCC-eEEEEEecccc
Confidence            789999999642110    00111122  57999999998765 56666655444443   22  33 46688999984

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.74  E-value=0.092  Score=45.55  Aligned_cols=40  Identities=28%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-C-CcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-S-VDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g-~~VlliD~D~   88 (294)
                      ...+..+.|.+|+||||++..|+..+.  .. | .+|.++-.|.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~~~v~~v~qd~  130 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLA--RWDHHPRVDLVTTDG  130 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTCCCEEEEEGGG
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhcc--ccCCCCeEEEEecCc
Confidence            445556669999999999999999998  43 3 4688877664

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=93.70  E-value=0.13  Score=45.80  Aligned_cols=64  Identities=9%  Similarity=-0.095  Sum_probs=48.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEec-ccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN-MAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN-~~~  227 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|+|++ +......+...+..+...+++..-+++| ++|
T Consensus        60 ~~i~iiDtPGh~~-f~~~~~~~~--~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~D  124 (370)
T 2elf_A           60 RNMVFVDAHSYPK-TLKSLITAL--NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDS  124 (370)
T ss_dssp             SEEEEEECTTTTT-CHHHHHHHH--HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGG
T ss_pred             eEEEEEECCChHH-HHHHHHHHH--HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            7899999996543 222333334  57999999999 7666677788888888888887678888 987

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=93.67  E-value=0.066  Score=48.18  Aligned_cols=55  Identities=18%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~   89 (294)
                      ...++.|...+..  ....+..+.|..|+||||++..|+....  .      .+.+|+++|....
T Consensus       161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~--~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ--IPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSSEEEEEESSSC
T ss_pred             ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc--cCcccCCCCCcEEEEeCCCc
Confidence            3456666666632  2455677779999999999999887665  3      4678999998753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.67  E-value=0.057  Score=42.51  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=20.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.++.|..|+||||++..||..+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3556668899999999999998775

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.66  E-value=0.03  Score=43.30  Aligned_cols=19  Identities=47%  Similarity=0.873  Sum_probs=16.7

Q ss_pred             EEEEecCCCchHHHHHHHH
Q psy11347         50 VLVLSGKGGVGKSTFTNLL   68 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~L   68 (294)
                      +.++.|..|+||||++..|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5667799999999999988

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.65  E-value=0.045  Score=44.01  Aligned_cols=33  Identities=39%  Similarity=0.541  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |.+|+ +.|..|+||||++..||. +     |.  .++|.|.
T Consensus         2 ~~~i~-l~G~~GsGKST~~~~La~-l-----g~--~~id~d~   34 (206)
T 1jjv_A            2 TYIVG-LTGGIGSGKTTIANLFTD-L-----GV--PLVDADV   34 (206)
T ss_dssp             CEEEE-EECSTTSCHHHHHHHHHT-T-----TC--CEEEHHH
T ss_pred             CcEEE-EECCCCCCHHHHHHHHHH-C-----CC--cccchHH
Confidence            44444 458899999999888765 2     33  3567763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.53  E-value=0.088  Score=45.07  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...++.|..|+||||++..+|..+.  ..+..+..+|+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY   86 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccc
Confidence            4566678899999999999999998  77888999988643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.52  E-value=0.049  Score=43.11  Aligned_cols=35  Identities=37%  Similarity=0.467  Sum_probs=24.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+.++.|.+|+||||++..|+..+.     ...+.+|.|
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d   43 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSD   43 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEccc
Confidence            44666679999999999999877532     234556654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.52  E-value=0.056  Score=42.79  Aligned_cols=23  Identities=43%  Similarity=0.663  Sum_probs=19.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHH
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLAR   70 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~   70 (294)
                      ..+.++.|.+|+||||++..|+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            34566679999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.48  E-value=0.035  Score=44.47  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.++.|..|+||||++..|+..+.
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            34556668899999999999998874

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.48  E-value=0.082  Score=42.54  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .++=|--|+||||.+..|+..|.  ..|.+|.+..-
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~--~~g~~v~~tre   36 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLE--KRGKKVILKRE   36 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEC
Confidence            34557789999999999999999  89999988754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.43  E-value=0.07  Score=47.13  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCC--------CCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE--------SVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~--------g~~VlliD~D   87 (294)
                      ....++.|..|+||||++..++..+.  ..        +..++.+++.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIE--EVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHH--HHHHHSSSSTTCEEEEEEHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHH--HHhhhhcCCCCceEEEEECc
Confidence            34667779999999999999999986  33        7778888763

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.42  E-value=0.047  Score=43.77  Aligned_cols=32  Identities=34%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++|++ .|..|+||||++..||. +.       +.++|+|.
T Consensus         2 ~~i~i-~G~~GsGKSTl~~~L~~-~g-------~~~i~~d~   33 (204)
T 2if2_A            2 KRIGL-TGNIGCGKSTVAQMFRE-LG-------AYVLDADK   33 (204)
T ss_dssp             CEEEE-EECTTSSHHHHHHHHHH-TT-------CEEEEHHH
T ss_pred             eEEEE-ECCCCcCHHHHHHHHHH-CC-------CEEEEccH
Confidence            34444 57899999999988887 42       45566653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.40  E-value=0.059  Score=44.77  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..|+..+.
T Consensus        29 ~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            445558999999999999998776

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.40  E-value=0.056  Score=43.41  Aligned_cols=34  Identities=32%  Similarity=0.455  Sum_probs=25.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+.|..|+||||++..|+..+.       +-++|+|.-
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg-------~~vid~D~~   46 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYG-------AHVVNVDRI   46 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC-------CEEEECcHH
Confidence            3445557789999999999987654       567888753

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=93.39  E-value=0.19  Score=47.57  Aligned_cols=65  Identities=17%  Similarity=0.041  Sum_probs=43.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|||+...... .....+  ..+|.+|+|++.+..-...+...+..+...+++ +.+++|++|.
T Consensus        70 ~~i~liDTPGhe~F~~-~~~r~~--~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl  134 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTT-LRKRGG--ALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDR  134 (594)
T ss_dssp             CEEEEECCCTTSCCTT-SBCSSS--BSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred             CCEEEEECCCcHHHHH-HHHHHH--hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEeccccc
Confidence            4699999996533110 011111  468999999988764444555666777777887 5689999985

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.36  E-value=0.11  Score=42.19  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=26.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      +.++=|--|+||||.+..|+..|.  . |.+|.+.-
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~--~-~~~v~~~~   36 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLV--K-DYDVIMTR   36 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--T-TSCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH--C-CCCEEEee
Confidence            444557789999999999999998  4 88887763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.36  E-value=0.14  Score=45.20  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=31.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~   88 (294)
                      ..++.|..|+||||++..++..+.  .. +..++.+++..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~   83 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFI   83 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCcc
Confidence            566779999999999999999998  66 67888888754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.35  E-value=0.062  Score=43.73  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..||..+.
T Consensus         6 ~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            6 RMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            344557789999999999998876

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.33  E-value=0.16  Score=45.95  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=32.8

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...-+..+.|..|+||||+...|+..+.  ....+|.+++-+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccc
Confidence            3445666779999999999999999998  6777888877443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.33  E-value=0.27  Score=48.68  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...++.|..|+|||++|..|+..+.  ..+..++.+|+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~  626 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTE  626 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechh
Confidence            3566779999999999999999998  7788888888754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=93.32  E-value=0.033  Score=52.98  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=19.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+++ -|.+|+||||+...|+..+.
T Consensus        47 ~iaI-vG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           47 AIAV-IGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CEEC-CCCTTSCHHHHHHHHHSCC-
T ss_pred             eEEE-ECCCCChHHHHHHHHhCCCC
Confidence            3444 48899999999999998875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.29  E-value=0.057  Score=40.99  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .++.|..|+|||++|..++....  ..+..++ +++.
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~   60 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YREL   60 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECC
Confidence            45668899999999999998887  6677776 7764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.25  E-value=0.03  Score=53.04  Aligned_cols=40  Identities=43%  Similarity=0.563  Sum_probs=31.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..++++ |.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus       369 Ge~~~iv-G~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~  408 (587)
T 3qf4_A          369 GSLVAVL-GETGSGKSTLMNLIPRLID--PERGRVEVDELDVR  408 (587)
T ss_dssp             TCEEEEE-CSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGG
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcc
Confidence            4445554 8999999999999999998  77778887666554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.23  E-value=0.27  Score=43.25  Aligned_cols=67  Identities=21%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             ccEEEEcCCCCCChH-------HHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhc--CCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSDE-------HLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKV--NIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~-------~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~--~~~~~~vvvN~~~  227 (294)
                      +++.++|+|+.....       .......+. ..+|.+++|.+.+..   +......++..+...  +.+ +.+|.|++|
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D  291 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALR-YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID  291 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG-GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHH-hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence            578899998643210       111222221 358989999886543   466666666666542  344 568899988


Q ss_pred             c
Q psy11347        228 F  228 (294)
Q Consensus       228 ~  228 (294)
                      .
T Consensus       292 l  292 (357)
T 2e87_A          292 V  292 (357)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.22  E-value=0.093  Score=44.99  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=27.4

Q ss_pred             ChHHHHhhhccCc-eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~~-~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ....|++.+.... .. .++.|..|+||||++..++..+.
T Consensus        29 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           29 TIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             HHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence            3445555554422 23 66779999999999999999986

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.21  E-value=0.038  Score=43.37  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=16.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|-.|+||||++..|+..+.
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            556668899999999999988776

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.17  E-value=0.074  Score=49.79  Aligned_cols=30  Identities=33%  Similarity=0.564  Sum_probs=23.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDV   81 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~V   81 (294)
                      +..+.|.+|+||||+...|+..+.  ....+|
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i  343 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKI  343 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC--CSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--CCCeEE
Confidence            444558999999999999999887  544443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.11  E-value=0.067  Score=47.05  Aligned_cols=38  Identities=13%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCC---CCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE---SVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~---g~~VlliD~D   87 (294)
                      ....++.|..|+||||++..++..+.  ..   +..++.+++.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLH--KKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHH--HHTCSSCEEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCceEEEEECC
Confidence            34566779999999999999999987  44   6778888764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.09  E-value=0.066  Score=45.79  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=25.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.+.++.|-.|+||||++..|+..+.      ...+++.|
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~------~~~~i~~D   35 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNP------GFYNINRD   35 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST------TEEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCC------CcEEeccc
Confidence            35667779999999999999887432      24566665

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.09  E-value=0.54  Score=43.68  Aligned_cols=38  Identities=16%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             eEEEEEecCCCchHHHHHHHH--HHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLL--ARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~L--A~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+.|.+|+||||++..+  +..+.  . +...++++...
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~-~~g~i~v~g~~   78 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQFLYNGIIE--F-DEPGVFVTFEE   78 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHH--H-CCCEEEEESSS
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHh--C-CCCEEEEEEeC
Confidence            344555589999999999994  55555  2 44566676543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.03  E-value=0.067  Score=42.37  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|-.|+||||++..||..+.
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            445557889999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.03  E-value=0.056  Score=42.96  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+.++.|..|+||||++..||..+.       ..++|.|
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d   44 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTG   44 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHH
Confidence            3455568899999999999998876       3456664

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.75  E-value=0.084  Score=42.24  Aligned_cols=25  Identities=36%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.++.|..|+||||++..|+..+.
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3555668899999999999998876

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=92.74  E-value=1.7  Score=38.45  Aligned_cols=21  Identities=48%  Similarity=0.586  Sum_probs=17.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHH
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARV   71 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~   71 (294)
                      ++++ |..|+||||+...|...
T Consensus         4 v~IV-G~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIV-GLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEE-CCSSSSHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHhCC
Confidence            4555 88899999999888765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.72  E-value=0.087  Score=42.13  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=24.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +..+.|..|+||||++..||..+.       +.++|.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC-------Cceeccc
Confidence            455668899999999999998776       4566766

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.60  E-value=0.072  Score=42.58  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+..+.|.+|+||||++..|+..+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3555568899999999999998753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.58  E-value=0.29  Score=44.83  Aligned_cols=64  Identities=8%  Similarity=-0.054  Sum_probs=33.1

Q ss_pred             ccEEEEcCCCCCChH-HHH------HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDE-HLS------LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~-~~~------~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +++.|+|+|+..... ...      ....+  ..+|.+++|++.+...-.....+++.+..   ..+.+|+||.|.
T Consensus       272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~~~~~~~i~~~l~~---~piivV~NK~Dl  342 (462)
T 3geh_A          272 IPVQVLDTAGIRETSDQVEKIGVERSRQAA--NTADLVLLTIDAATGWTTGDQEIYEQVKH---RPLILVMNKIDL  342 (462)
T ss_dssp             EEEEECC--------------------CCC--CSCSEEEEEEETTTCSCHHHHHHHHHHTT---SCEEEEEECTTS
T ss_pred             EEEEEEECCccccchhHHHHHHHHHHhhhh--hcCCEEEEEeccCCCCCHHHHHHHHhccC---CcEEEEEECCCC
Confidence            778999998632210 000      11112  57899999988765322233444554443   346788999985

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.57  E-value=0.082  Score=46.31  Aligned_cols=34  Identities=38%  Similarity=0.494  Sum_probs=26.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+.++.|..|+||||++..||..+.       .-+||+|--
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~-------~eiIs~Ds~   74 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP-------LEVINSDKM   74 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC-------EEEEECCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC-------CcEEccccc
Confidence            4666778999999999999987554       467888853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.54  E-value=0.077  Score=42.37  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +.++.|-.|+||||++..|+..|.    |.++..++.
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l~----g~~~~~~~~   38 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESIP----ANTIKYLNF   38 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTSC----GGGEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHC----CCceEEEec
Confidence            445557889999999999987663    456666553

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.53  E-value=0.088  Score=41.92  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|-.|+||||++..||..|.
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEECCCccCHHHHHHHHHHhcC
Confidence            45568899999999999999888

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=92.52  E-value=0.095  Score=48.28  Aligned_cols=67  Identities=7%  Similarity=-0.138  Sum_probs=33.1

Q ss_pred             ccEEEEcCCCCCChHH-H------HHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEH-L------SLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~-~------~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|||+...... .      .....+  ..+|.+|+|++.+.. +..........+.......+.+|+||+|.
T Consensus       281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl  355 (476)
T 3gee_A          281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR  355 (476)
T ss_dssp             EEEEEEC--------------------CCC--SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTS
T ss_pred             eEEEEEECCCCCcchhHHHHHHHHHHHhhc--ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCC
Confidence            7899999996422110 0      011122  579999999987653 22212223333333333446788999984

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=92.44  E-value=1.3  Score=38.44  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..++.|..|+||||++..+|..+.
T Consensus        26 a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           26 ALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCchHHHHHHHHHHHHh
Confidence            345568889999999999999987

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.40  E-value=0.064  Score=43.41  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.++.|..|+||||++..|+..+.
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34556679999999999999988775

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=92.38  E-value=0.06  Score=43.33  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..|+..+.
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCc
Confidence            456668899999999999998775

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.33  E-value=0.1  Score=40.39  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=24.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |..|++ .|-.|+||||++..||..|.  .     -++|+|.
T Consensus         7 ~~~i~l-~G~~GsGKSTva~~La~~lg--~-----~~id~D~   40 (168)
T 1zuh_A            7 MQHLVL-IGFMGSGKSSLAQELGLALK--L-----EVLDTDM   40 (168)
T ss_dssp             -CEEEE-ESCTTSSHHHHHHHHHHHHT--C-----CEEEHHH
T ss_pred             cceEEE-ECCCCCCHHHHHHHHHHHhC--C-----CEEEChH
Confidence            444554 57789999999999998887  3     3567663

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=92.21  E-value=0.12  Score=48.47  Aligned_cols=50  Identities=20%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             hHHHHhhhccC---ceEEEEEecCCCchHHHHHHHHHH----HHhhcCCCCcEEEEecC
Q psy11347         36 IELVKSHLSNV---KHKVLVLSGKGGVGKSTFTNLLAR----VLAKSNESVDVGVLDLD   87 (294)
Q Consensus        36 ~~~i~~~~~~~---~~~i~v~s~kGGvGKTTia~~LA~----~la~~~~g~~VlliD~D   87 (294)
                      ...|.+.+...   ...+..+.|-||+||||+|..++.    ...  ..-.-++.++..
T Consensus       137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~--~~F~~~~wv~vs  193 (549)
T 2a5y_B          137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG--INYDSIVWLKDS  193 (549)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT--TTBSEEEEEECC
T ss_pred             HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh--ccCCcEEEEEEC
Confidence            55555555432   234555568899999999999985    333  222356666553

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.13  E-value=0.11  Score=40.07  Aligned_cols=23  Identities=43%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..|+..+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45568899999999999998876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.12  E-value=0.094  Score=42.54  Aligned_cols=31  Identities=42%  Similarity=0.637  Sum_probs=23.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+.++.|..|+||||++..|+. +     |  ..++|+|
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-l-----g--~~~id~D   35 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-L-----G--INVIDAD   35 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-T-----T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-c-----C--CEEEEcc
Confidence            4566668899999999988875 3     3  3567776

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=92.10  E-value=0.41  Score=42.58  Aligned_cols=66  Identities=8%  Similarity=-0.047  Sum_probs=39.4

Q ss_pred             ccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCC----CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNI----PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~----~~~~vvvN~~~~  228 (294)
                      ..++++|+|+-...      ....++..+  ..+|.++.|++... .+.....+...|...+.    +...+++|+.+.
T Consensus       119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i--~~ad~il~vvD~~~-p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVA--RTCNLLFIILDVNK-PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             EEEEEEECGGGCCC-----CHHHHHHHHH--HHCSEEEEEEETTS-HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             cEEEEEeCCCccCCchhhhHHHHHHHHHH--HhcCccccccccCc-cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            67899999953321      112233333  57999999987753 34555555556654432    234578888763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.09  E-value=0.13  Score=48.52  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=31.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ..+.++.|..|+||||++..++..+.  ..|.+|++.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~  238 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLC  238 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEe
Confidence            45777789999999999999999999  789999987

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=92.07  E-value=0.12  Score=43.21  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=30.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -.++.|..|+|||+++..++..+.  ..+..++.+++..
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~   67 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA   67 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence            455678999999999999999888  6778888888754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=92.05  E-value=0.94  Score=38.93  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...|++.+.....-..++.|..|+||||++..||..+.
T Consensus         6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~   43 (305)
T 2gno_A            6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE   43 (305)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc
Confidence            33444444433333566678899999999999988643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.03  E-value=0.13  Score=44.45  Aligned_cols=37  Identities=32%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .-.++.|..|+|||+++..+|..+. ...|.+|.++.+
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v~~~~~  189 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS-EKKGVSTTLLHF  189 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCEEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEH
Confidence            4455668899999999999999876 135788988866

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.01  E-value=0.099  Score=47.63  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      -.++.|..|+||||++..++..+.....+.+++.+++.
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            45667889999999999999998722237888888764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.98  E-value=0.17  Score=39.10  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES   78 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g   78 (294)
                      ....+..+.|..|+||||+...|+..+.  ..|
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~--~~G   61 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG--HQG   61 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT--CCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC--CCC
Confidence            3444555668999999999999999986  544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=91.97  E-value=0.12  Score=40.89  Aligned_cols=23  Identities=30%  Similarity=0.677  Sum_probs=19.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.|.+|+||||+...|+..+.
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34558999999999999999885

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=91.92  E-value=0.028  Score=47.19  Aligned_cols=37  Identities=32%  Similarity=0.362  Sum_probs=27.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHH--HhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARV--LAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~--la~~~~g~~VlliD~D~   88 (294)
                      +..+-|.+|+||||+...|+..  +.  ....+|.+-+.|.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~   69 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENI   69 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEEC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEEC
Confidence            4445588999999999999997  45  4556777755544

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=91.91  E-value=0.11  Score=41.58  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=23.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.++.|..|+||||++..|+..+.       ..++|+|
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~g-------~~~i~~d   47 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDYS-------FVHLSAG   47 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS-------CEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-------ceEEeHH
Confidence            455568899999999999987655       2556665

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.84  E-value=1.1  Score=35.39  Aligned_cols=89  Identities=17%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|+|.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        78 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~  149 (201)
T 2hup_A           78 VKLQIWDTAGQERFRT-ITQSYY--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-----EL  149 (201)
T ss_dssp             EEEEEECCTTCGGGHH-HHHHHH--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEECCCcHhHHH-HHHHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-----cc
Confidence            7899999996433211 122233  57999999988654 67777777777776532  22456889998842     11


Q ss_pred             CccCCCCchhHHHHHhhcCC-cee
Q psy11347        237 SEIFPKDSGGAEKMCAELSV-PFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~-~~l  259 (294)
                      ..+   ..+.++++.+..+. +++
T Consensus       150 ~~v---~~~~~~~~~~~~~~~~~~  170 (201)
T 2hup_A          150 REV---SLAEAQSLAEHYDILCAI  170 (201)
T ss_dssp             CCS---CHHHHHHHHHHTTCSEEE
T ss_pred             ccc---CHHHHHHHHHHcCCCEEE
Confidence            111   13445667677776 444

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.82  E-value=0.11  Score=43.01  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=21.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.+..+.|..|+||||++..||..|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44566678899999999999998886

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.75  E-value=0.078  Score=42.99  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=24.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|..|+||||++..||..+.       ..++|.|.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g-------~~~~~~d~   36 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS-------MIYVDTGA   36 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC-------CceecCCh
Confidence            3556678899999999999887665       34677763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=91.75  E-value=0.13  Score=40.95  Aligned_cols=32  Identities=41%  Similarity=0.527  Sum_probs=22.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|..|+||||++..||..      |  ..++|.|.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~------g--~~~id~d~   40 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW------G--YPVLDLDA   40 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT------T--CCEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC------C--CEEEcccH
Confidence            34455588999999998877653      3  44677763

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=91.72  E-value=0.61  Score=36.78  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-----CCeeEEEeccccccCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-----IPIIGVVENMATFVCPKC  233 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-----~~~~~vvvN~~~~~~~~~  233 (294)
                      +.+.|+|+|+...  ...... ..-..+|.+|++.+.+. .++..+..++..+....     ...+.+|.|+.|..    
T Consensus        73 ~~~~l~Dt~G~~~--~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----  145 (208)
T 2yc2_C           73 VELFLLDTAGSDL--YKEQIS-QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----  145 (208)
T ss_dssp             EEEEEEETTTTHH--HHHHHS-TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------
T ss_pred             EEEEEEECCCcHH--HHHHHH-HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----
Confidence            7899999995422  111211 11157899999988754 56677777777776532     22467899999842    


Q ss_pred             CC-CCccCCCCchhHHHHHhhcCCcee
Q psy11347        234 TK-PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       234 ~~-~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       . ...+   ..+...++.+.++.+++
T Consensus       146 -~~~~~v---~~~~~~~~~~~~~~~~~  168 (208)
T 2yc2_C          146 -PQRHQV---RLDMAQDWATTNTLDFF  168 (208)
T ss_dssp             -----CC---CHHHHHHHHHHTTCEEE
T ss_pred             -hhhccC---CHHHHHHHHHHcCCEEE
Confidence             1 1122   13456677777776554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=91.64  E-value=0.088  Score=46.34  Aligned_cols=40  Identities=25%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~   88 (294)
                      .....++.|..|+||||++..++..+.  ..      +..++.+++..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLE--ARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHH--HHHHHHTCCEEEEEEETTT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHH--HHHhccCCCeEEEEEECCc
Confidence            344566779999999999999999987  43      66777777644

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=91.61  E-value=0.25  Score=44.34  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=43.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....+...+  ..+|.+|++++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus        81 ~~i~iiDtPGh~~-f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           81 RRVSFVDSPGHET-LMATMLSGA--SLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL  147 (408)
T ss_dssp             EEEEEEECSSHHH-HHHHHHTTC--SCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred             cEEEEEECCCHHH-HHHHHHHhH--hhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence            6799999996321 111122112  4679999999877532 4445555666666777667799999984

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.60  E-value=0.11  Score=42.67  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.++.|.+|+||||+...|+..+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            44667779999999999999998775

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=91.52  E-value=0.1  Score=41.88  Aligned_cols=24  Identities=42%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|.+|+||||+...|+..+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            445568999999999999998775

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.44  E-value=0.14  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -+.++.|..|+||||+...|+...    .++|+.++.-|.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~----~~~~~aVi~~d~   40 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ----HGYKIAVIENEF   40 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC----CCCCEEEECSSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc----CCCcEEEEEecC
Confidence            356667899999999999988753    478999997764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.41  E-value=0.11  Score=42.54  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=19.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..||..+.
T Consensus         9 ~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            9 RAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            445558899999999999988665

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.38  E-value=0.085  Score=48.37  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~VlliD~D~   88 (294)
                      +.+++++ |.+|+||||+...|+..+.  ..+. +++++|.|+
T Consensus       138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~  177 (460)
T 2npi_A          138 GPRVVIV-GGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP  177 (460)
T ss_dssp             CCCEEEE-ESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc
Confidence            4555555 8899999999999999988  5566 756677765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.34  E-value=0.14  Score=42.01  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +..|++ .|..|+||||++..||..+.
T Consensus        16 ~~~I~l-~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVL-LGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence            344444 57789999999999999886

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.34  E-value=0.2  Score=46.01  Aligned_cols=38  Identities=34%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +..+...+....+.-.++.|..|+|||+++..||..+.
T Consensus       189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            44455555443333346679999999999999999997

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=91.31  E-value=1.2  Score=38.92  Aligned_cols=24  Identities=42%  Similarity=0.695  Sum_probs=21.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..++.|..|+||||++..+|..+.
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456779999999999999999987

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=91.28  E-value=0.43  Score=43.94  Aligned_cols=63  Identities=17%  Similarity=0.070  Sum_probs=36.8

Q ss_pred             ccEEEEcCCCCC-ChH-------HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGT-SDE-------HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~-~~~-------~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++|+|+|+-. ...       .......+  ..+|.+|+|++.+. .+... ..+++.+  .+.+ +.+|+||+|.
T Consensus       291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~-~~il~~l--~~~p-iivV~NK~DL  362 (482)
T 1xzp_A          291 ILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEED-RKILERI--KNKR-YLVVINKVDV  362 (482)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHH-HHHHHHH--TTSS-EEEEEEECSS
T ss_pred             eEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHH-HHHHHHh--cCCC-EEEEEECccc
Confidence            678999999643 110       01122333  46899999988644 23333 2344444  2334 6799999984

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.21  E-value=0.2  Score=41.51  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=21.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...+.++.|..|+||||++..|+..+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344566678899999999999997765

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.19  E-value=0.25  Score=45.16  Aligned_cols=33  Identities=18%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVL   84 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~Vlli   84 (294)
                      ..++.|..|+||||++..++..|.  ..+. +|+++
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~--~~~~~~il~~   80 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALI--STGETGIILA   80 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH--hcCCceEEEe
Confidence            777889999999999999999998  6676 77776

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.16  E-value=0.15  Score=41.06  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=19.2

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..|+..+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34568899999999999988765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=91.16  E-value=0.15  Score=41.43  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..|++ .|..|+||||++..||..+.
T Consensus         6 ~~I~l-~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLIL-IGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEE-EECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence            34444 47789999999999998876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.15  E-value=0.35  Score=45.91  Aligned_cols=24  Identities=46%  Similarity=0.775  Sum_probs=20.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |..+-|.+|+||||+...|+..+.
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            455568999999999999999987

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=91.12  E-value=0.18  Score=46.24  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ++.+.++.|-.|+||||++..|+..+.  ..+.++..++.|
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~--~~~~~t~~~~~d   76 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLN--FIGVPTREFNVG   76 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh--ccCCCceEEecc
Confidence            455667778899999999999999998  677777766543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=91.09  E-value=0.13  Score=41.35  Aligned_cols=27  Identities=41%  Similarity=0.532  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...+..+.|.+|+||||+...|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            334555558999999999999999875

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=91.04  E-value=0.19  Score=44.66  Aligned_cols=40  Identities=15%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             ceEEEEE--ecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347         47 KHKVLVL--SGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~--s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~   88 (294)
                      .....++  .|.+|+||||++..++..+.  ..      +..++.+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   96 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS--EAAAKEGLTVKQAYVNAFN   96 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHH--HHHHHTTCCEEEEEEEGGG
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHH--HHHhccCCceeEEEEECCC
Confidence            3446666  89999999999999999887  42      56788888743

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=90.81  E-value=0.13  Score=41.80  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..||..|.
T Consensus         8 I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            8 VMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44557889999999999999887

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=90.79  E-value=0.23  Score=40.02  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=25.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhh--c-CCC-CcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAK--S-NES-VDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~--~-~~g-~~VlliD~D   87 (294)
                      |.++.|..|+|||+.+..++..+..  . ..| .+|.+..+|
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            5667789999999999887666520  0 245 555556554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=90.71  E-value=0.067  Score=45.63  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+-+.+.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~   85 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP   85 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence            445559999999999999999998  7777888766554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=90.70  E-value=0.13  Score=44.83  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ..+.++.|..|+||||++..+|.. .    |.+|+++++
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEe
Confidence            345578899999999999999876 3    668888888

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.69  E-value=0.71  Score=35.41  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        60 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  131 (180)
T 2g6b_A           60 VKLQMWDTAGQERFRS-VTHAYY--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-----HE  131 (180)
T ss_dssp             EEEEEEECCCC---------CCG--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-----SC
T ss_pred             EEEEEEeCCCcHHHHH-HHHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-----cc
Confidence            7899999996432111 111122  46898998887654 56666677777665432  22467899999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+++++
T Consensus       132 ~~~---~~~~~~~~~~~~~~~~~  151 (180)
T 2g6b_A          132 RVV---KREDGEKLAKEYGLPFM  151 (180)
T ss_dssp             CCS---CHHHHHHHHHHHTCCEE
T ss_pred             ccc---CHHHHHHHHHHcCCeEE
Confidence            111   13345666666676555

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=90.63  E-value=0.078  Score=44.34  Aligned_cols=39  Identities=33%  Similarity=0.489  Sum_probs=30.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~   74 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA   74 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence            3444558999999999999999998  77778877555543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=90.52  E-value=0.28  Score=42.55  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             HHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        38 ~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .|+..+........++.|..|+|||+++..++..|.
T Consensus        35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            344455454555567889999999999999999996

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.48  E-value=0.2  Score=44.97  Aligned_cols=34  Identities=38%  Similarity=0.596  Sum_probs=26.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.+.+++|..|+||||++..||..+.  .     -+|.+|-
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~--~-----~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN--G-----EVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT--E-----EEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC--C-----eEeecCc
Confidence            34667788999999999999999887  2     3566663

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.36  E-value=0.18  Score=39.44  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|.+|+||||+...|...|.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            677779999999999999999887

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=90.33  E-value=0.22  Score=44.22  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=20.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      .+.++-|--|+||||++..|+..|.  ..|  |++.
T Consensus        50 ~fIt~EG~dGsGKTT~~~~Lae~L~--~~g--vv~t   81 (376)
T 1of1_A           50 LRVYIDGPHGMGKTTTTQLLVALGS--RDD--IVYV   81 (376)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHC------CC--EEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh--hCC--EEEE
Confidence            3455556669999999999999998  666  5444

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.33  E-value=0.66  Score=35.80  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+...... .....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        57 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~  128 (183)
T 2fu5_C           57 IKLQIWDTAGQERFRT-ITTAYY--RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DK  128 (183)
T ss_dssp             EEEEEEEC----------CCTTT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SC
T ss_pred             EEEEEEcCCCChhhhh-hHHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-----cc
Confidence            7899999996432110 011112  57899999987754 56777777777776531  22467889999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+..+++.+..+++++
T Consensus       129 ~~v---~~~~~~~~~~~~~~~~~  148 (183)
T 2fu5_C          129 RQV---SKERGEKLALDYGIKFM  148 (183)
T ss_dssp             CCS---CHHHHHHHHHHHTCEEE
T ss_pred             CcC---CHHHHHHHHHHcCCeEE
Confidence            121   13455667767776554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.29  E-value=0.055  Score=46.84  Aligned_cols=41  Identities=29%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.++++ .|.+|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        80 Ge~vai-vG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~  120 (306)
T 3nh6_A           80 GQTLAL-VGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQ  120 (306)
T ss_dssp             TCEEEE-ESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTS
T ss_pred             CCEEEE-ECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEccc
Confidence            344444 58999999999999999998  777788886666543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=90.26  E-value=0.14  Score=41.80  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHH
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVL   72 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~l   72 (294)
                      .+..+.|.+|+||||+...|+..+
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            344555899999999999999855

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.24  E-value=0.36  Score=41.73  Aligned_cols=45  Identities=27%  Similarity=0.247  Sum_probs=33.3

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -+..|.+ +..   .+.++.|..|+||||++..++..+.  .   +++++++..
T Consensus        21 el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~   65 (357)
T 2fna_A           21 EIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRK   65 (357)
T ss_dssp             HHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGG
T ss_pred             HHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchh
Confidence            3445555 554   3777789999999999999988766  3   478888753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=90.24  E-value=0.088  Score=43.45  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=26.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      +.++++ -|.+|+||||+...|+..+.  ....+|.+
T Consensus        34 Ge~~~i-~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~   67 (229)
T 2pze_A           34 GQLLAV-AGSTGAGKTSLLMMIMGELE--PSEGKIKH   67 (229)
T ss_dssp             TCEEEE-ECCTTSSHHHHHHHHTTSSC--CSEEEEEE
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHhCCCc--CCccEEEE
Confidence            344444 48899999999999999988  65666654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=90.23  E-value=0.21  Score=40.81  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            356668899999999999998776

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=90.22  E-value=0.088  Score=44.44  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+-|.+|+||||+...|+..+.  ....+|.+-+.|.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~   70 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI   70 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence            444559999999999999999988  6777887755444

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.21  E-value=0.25  Score=46.46  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHH---hhcCCCCcEEEEecCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVL---AKSNESVDVGVLDLDI   88 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~l---a~~~~g~~VlliD~D~   88 (294)
                      .....|.+.+..  ....++.+.|-||+||||++..++...   . ......|..++.+.
T Consensus       131 ~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~v~wv~~~~  189 (591)
T 1z6t_A          131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE-GCFPGGVHWVSVGK  189 (591)
T ss_dssp             HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH-HHCTTCEEEEEEES
T ss_pred             HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH-hhCCCceEEEECCC
Confidence            334556666642  234566677999999999999987543   2 01223588877754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.16  E-value=0.18  Score=40.69  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=18.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..||..+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34568899999999999987654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=90.15  E-value=0.26  Score=39.02  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .++.|..|+||||+|..||   .  . +.+++++++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la---~--~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALI---G--D-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHH---C--S-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHH---h--c-CCCeEEEecCC
Confidence            3556788999999998876   3  3 67899999854

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.06  E-value=0.14  Score=45.33  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=26.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ..+..+.|..|+||||+...|+..+.  .....|.+-|
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~  210 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIED  210 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECC
Confidence            33445558899999999999999888  6555555543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.03  E-value=0.66  Score=37.06  Aligned_cols=89  Identities=17%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~~~~~~~~  235 (294)
                      +.+.|+|+|+.... .......+  ..+|.+|++.+.+. .++..+..++..+...   ....+.+|+|+.|..     .
T Consensus        84 ~~l~l~Dt~G~~~~-~~~~~~~~--~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-----~  155 (217)
T 2f7s_A           84 VHLQLWDTAGQERF-RSLTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----D  155 (217)
T ss_dssp             EEEEEEEEESHHHH-HHHHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----G
T ss_pred             EEEEEEECCCcHhH-HhHHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-----c
Confidence            78999999963211 11122223  57999999988654 5566666555555432   123467889999842     1


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...+   ..+..+++.+..+++++
T Consensus       156 ~~~v---~~~~~~~~~~~~~~~~~  176 (217)
T 2f7s_A          156 QREV---NERQARELADKYGIPYF  176 (217)
T ss_dssp             GCCS---CHHHHHHHHHHTTCCEE
T ss_pred             cccc---CHHHHHHHHHHCCCcEE
Confidence            1111   13456677777777655

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=90.01  E-value=0.073  Score=44.70  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++-|-.|+||||++..|+..|.
T Consensus        26 ~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           26 KISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            455558899999999999988876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=89.99  E-value=0.22  Score=42.35  Aligned_cols=32  Identities=38%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .+.++.|..|+||||++..|+ .+     |  .-++|+|.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~l-----g--~~~id~D~  107 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NL-----G--AYIIDSDH  107 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HH-----T--CEEEEHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HC-----C--CcEEehhH
Confidence            345556888999999999998 33     3  24577763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=89.88  E-value=0.23  Score=40.09  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             EEecCCCchHHHHHHHHHHHHh
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.|..|+||||++..|+..+.
T Consensus         4 ~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            4 ILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHhC
Confidence            5567889999999999998775

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=89.83  E-value=0.07  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV   83 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll   83 (294)
                      .+..+-|.+|+||||+...|+..+.  ....+|.+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~   64 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAI   64 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence            3445558899999999999999987  55556654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=89.81  E-value=0.2  Score=40.40  Aligned_cols=28  Identities=18%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |.+.|..+++.-|+||||++..||..|.
T Consensus         4 m~~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            3345677778899999999999999887

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=89.53  E-value=0.23  Score=41.26  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+....|++++.|+++.||+|+     .+|..|+  ..|.+|.++|-+..
T Consensus        15 ~~~~~~m~k~vlITGas~gIG~-----~la~~l~--~~G~~V~~~~r~~~   57 (251)
T 3orf_A           15 VPRGSHMSKNILVLGGSGALGA-----EVVKFFK--SKSWNTISIDFREN   57 (251)
T ss_dssp             -------CCEEEEETTTSHHHH-----HHHHHHH--HTTCEEEEEESSCC
T ss_pred             cccccccCCEEEEECCCCHHHH-----HHHHHHH--HCCCEEEEEeCCcc
Confidence            4466677899999999999997     7788888  78999999998764

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=89.48  E-value=0.31  Score=46.57  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      +-++++.|..|.|||++.+++...+.  ..+.+||+.-
T Consensus       205 ~~~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a  240 (646)
T 4b3f_X          205 KELAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCA  240 (646)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEc
Confidence            34788889999999999999999998  7899999874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=89.43  E-value=0.31  Score=40.02  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=27.7

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.+.|..+++.-|+||||++..||..|.       .-++|.|.
T Consensus        12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg-------~~~~d~~~   47 (223)
T 3hdt_A           12 NKNLIITIEREYGSGGRIVGKKLAEELG-------IHFYDDDI   47 (223)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHHHT-------CEEECHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHcC-------CcEEcHHH
Confidence            3456777778899999999999999887       23577653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.41  E-value=0.23  Score=39.62  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=21.6

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCC
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNES   78 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g   78 (294)
                      .+.|.+|+||||+...|+..+.  ..|
T Consensus         5 ~i~G~nG~GKTTll~~l~g~~~--~~G   29 (189)
T 2i3b_A            5 FLTGPPGVGKTTLIHKASEVLK--SSG   29 (189)
T ss_dssp             EEESCCSSCHHHHHHHHHHHHH--HTT
T ss_pred             EEECCCCChHHHHHHHHHhhcc--cCC
Confidence            4458999999999999999998  566

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=89.40  E-value=0.27  Score=39.64  Aligned_cols=38  Identities=34%  Similarity=0.541  Sum_probs=26.9

Q ss_pred             hHHHHhhhccCc-eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         36 IELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        36 ~~~i~~~~~~~~-~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...|...+.... ....++.|..|+||||++..++..+.
T Consensus        32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344444444321 23566779999999999999999988

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=89.33  E-value=0.5  Score=44.91  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=46.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.++|+|+|+... ....+...+  ..+|.+|+|++.+...+       ..+...+..+...+++.+.+|+|+++.
T Consensus       245 ~~~~iiDTPG~e~-f~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl  317 (611)
T 3izq_1          245 ANFTIVDAPGHRD-FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN  317 (611)
T ss_dssp             CEEEEEECCSSSC-HHHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred             ceEEEEECCCCcc-cHHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            7899999996543 222222223  68999999999876432       355666667777788777889999984

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=89.25  E-value=0.15  Score=41.80  Aligned_cols=25  Identities=40%  Similarity=0.529  Sum_probs=13.6

Q ss_pred             EEEEEecCCCchHHHHHHHHH-HHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLA-RVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA-~~la   73 (294)
                      .+..+.|..|+||||++..|+ ..+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC----
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            345556889999999999999 8765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=89.22  E-value=0.31  Score=43.80  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. ...-.+...+  ..+|.+|+|++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus        83 ~~i~iiDtPGh~-~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl  149 (410)
T 1kk1_A           83 RRVSFIDAPGHE-ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEEECSSHH-HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred             cEEEEEECCChH-HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence            579999999642 2122223222  4679999999877532 4455555556666677667788999984

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=89.14  E-value=0.23  Score=42.74  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      -.++.|..|+|||++|..++....  ..+..++.+++..
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~   63 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAA   63 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSS
T ss_pred             cEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCC
Confidence            345668999999999999999887  6778888888754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.06  E-value=0.19  Score=42.12  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=25.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+.++.|..|+||||++..||..+.  .     -++|.|
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg--~-----~~~d~d   80 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLG--Y-----TFFDCD   80 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT--C-----EEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcC--C-----cEEeCc
Confidence            3455558899999999999999887  2     467765

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=89.06  E-value=0.46  Score=43.89  Aligned_cols=42  Identities=21%  Similarity=0.334  Sum_probs=37.8

Q ss_pred             ceEEEEEecC-CCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGK-GGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~k-GGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +|-|.|++|- +|.||-.+|+.|+..|.  .+|++|..+..||.-
T Consensus         3 ~k~i~vtggv~s~lgkgi~~as~g~ll~--~~g~~v~~~k~dpyl   45 (535)
T 3nva_A            3 NKYIVVTGGVLSSVGKGTLVASIGMLLK--RRGYNVTAVKIDPYI   45 (535)
T ss_dssp             CEEEEEECCCSTTTTHHHHHHHHHHHHH--HTTCCEEEEEEECSS
T ss_pred             ceEEEEeCccccCcchHHHHHHHHHHHH--HCCceEEEEecCcce
Confidence            6778888765 89999999999999999  999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.02  E-value=1.5  Score=33.11  Aligned_cols=65  Identities=17%  Similarity=0.105  Sum_probs=41.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....... ....+  ..+|.++++.+.+. .++..+..++..+.+.     +.+ +.+|.|+.|.
T Consensus        51 ~~~~~~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl  121 (172)
T 2erx_A           51 CTLQITDTTGSHQFPAM-QRLSI--SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE  121 (172)
T ss_dssp             EEEEEEECCSCSSCHHH-HHHHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred             EEEEEEECCCchhhHHH-HHHhc--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence            78999999975432221 12222  35888888887654 5566666666666542     344 6789999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.00  E-value=0.2  Score=43.63  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=27.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .++.|..|+||||++..+|..+.  ..+.++.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~   84 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNA   84 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcC
Confidence            56678999999999999999998  5555555555443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=88.97  E-value=0.25  Score=39.36  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=19.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .|++|.+|+||||+...|...+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            57789999999999988866554

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=88.90  E-value=0.36  Score=39.42  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +++|.++ |..|+||+|.|..||..+.
T Consensus        29 ~kiI~ll-GpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           29 AKVIFVL-GGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CEEEEEE-CCTTCCHHHHHHHHHHHHC
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHC
Confidence            4555554 7889999999999998876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=88.85  E-value=0.34  Score=37.10  Aligned_cols=66  Identities=9%  Similarity=-0.035  Sum_probs=37.6

Q ss_pred             ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.....     .......+....+|.++++.+...  ......++..+.+.+.+ +-+|.|+.|.
T Consensus        50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl  120 (165)
T 2wji_A           50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDL  120 (165)
T ss_dssp             EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred             cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHh
Confidence            568889998643210     000111111126898888887654  23334455556555665 5688999884

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=88.76  E-value=0.29  Score=41.78  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ....++.|..|+|||+++..+|..+.     .+++.+++
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~   69 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSA   69 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeH
Confidence            34555668999999999999998875     35666654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=88.68  E-value=0.45  Score=36.98  Aligned_cols=20  Identities=45%  Similarity=0.682  Sum_probs=16.0

Q ss_pred             eEEEEEecCCCchHHHHHHH
Q psy11347         48 HKVLVLSGKGGVGKSTFTNL   67 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~   67 (294)
                      ..+..+.|.+|+||||++..
T Consensus         9 gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHH
Confidence            44556669999999999994

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=88.67  E-value=1.6  Score=40.98  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=25.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcC-------CCCcEEEE
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSN-------ESVDVGVL   84 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~-------~g~~Vlli   84 (294)
                      +.+. +....|+|||.++..++..+.+..       .+.+|+++
T Consensus       199 ~~~l-l~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil  241 (590)
T 3h1t_A          199 KRSL-ITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL  241 (590)
T ss_dssp             SEEE-EEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEE
T ss_pred             CceE-EEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEE
Confidence            4443 346789999999999998886212       45777765

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=88.66  E-value=0.68  Score=42.13  Aligned_cols=52  Identities=25%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             CceEEEEEec---CCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347         46 VKHKVLVLSG---KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE  102 (294)
Q Consensus        46 ~~~~i~v~s~---kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~  102 (294)
                      .+|.|.|++.   +-|.||||++..|+..|.  +.|+++.+.   ...|++--.||....
T Consensus        42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~--~lgk~~~~~---lRePSlGP~FGiKGG   96 (543)
T 3do6_A           42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLN--RIGKKSIVT---LREPSLGPTLGLKGG   96 (543)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHH--HTTCCEEEE---ECCCCHHHHHHSCCS
T ss_pred             CCeEEEEEecCCCCCCCCccchHHHHHHHHH--hcCCeeEEE---EecCCCCCcCCcccc
Confidence            4777777664   459999999999999999  899999776   456677777777644

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=88.61  E-value=0.2  Score=40.69  Aligned_cols=32  Identities=28%  Similarity=0.233  Sum_probs=24.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG   82 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl   82 (294)
                      +.++++ -|.+|+||||+...|+.. .  ....+|.
T Consensus        22 Ge~~~l-iG~nGsGKSTLl~~l~Gl-~--p~~G~I~   53 (208)
T 3b85_A           22 NTIVFG-LGPAGSGKTYLAMAKAVQ-A--LQSKQVS   53 (208)
T ss_dssp             CSEEEE-ECCTTSSTTHHHHHHHHH-H--HHTTSCS
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHhcC-C--CcCCeee
Confidence            445555 589999999999999998 6  4455553

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=88.58  E-value=0.34  Score=47.95  Aligned_cols=47  Identities=26%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEecC
Q psy11347         39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-------ESVDVGVLDLD   87 (294)
Q Consensus        39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-------~g~~VlliD~D   87 (294)
                      +...+....+.-.++.|..|+||||++..+|..+.  .       .+.+++.+|+.
T Consensus       182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~--~~~~p~~l~~~~~~~l~~~  235 (854)
T 1qvr_A          182 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPEGLKGKRIVSLQMG  235 (854)
T ss_dssp             HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH--HTCSCTTSTTCEEEEECC-
T ss_pred             HHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh--cCCCchhhcCCeEEEeehH
Confidence            33333333333345668899999999999999996  3       36788888764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=88.53  E-value=0.38  Score=40.48  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      -.++.|..|+||||++..+|..+.     .++..+++
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~   84 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATETN-----ATFIRVVG   84 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEG
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence            355668899999999999987765     34555544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=88.42  E-value=2.7  Score=31.44  Aligned_cols=88  Identities=14%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.++|+|+......+ ....+  ..+|.++++.+.+ ..++.....++..+...    +.+ +.+|.|+.|..     
T Consensus        49 ~~~~i~D~~g~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~-----  119 (166)
T 3q72_A           49 ASLMVYDIWEQDGGRWL-PGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLV-----  119 (166)
T ss_dssp             EEEEEEECC------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCC-----
T ss_pred             EEEEEEECCCCccchhh-hhhhh--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccc-----
Confidence            67899999964321111 11112  4688888887654 46777777777777543    344 56889999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.   .+..+.+.+..+.+++
T Consensus       120 ~~~~~~---~~~~~~~~~~~~~~~~  141 (166)
T 3q72_A          120 RSREVS---VDEGRACAVVFDCKFI  141 (166)
T ss_dssp             SSCCSC---HHHHHHHHHHTTCEEE
T ss_pred             cccccC---HHHHHHHHHHhCCcEE
Confidence            112222   3344566666666554

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=88.38  E-value=1.4  Score=34.28  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc------CCCeeEEEeccccccCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV------NIPIIGVVENMATFVCPK  232 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~------~~~~~~vvvN~~~~~~~~  232 (294)
                      +.+.|+|+|+......+  ...+  ..+|.++++.+.+ ..++..+..++..+...      +.+ +.+|.|+.|..   
T Consensus        69 ~~l~i~Dt~G~~~~~~~--~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~---  140 (187)
T 3c5c_A           69 VHLRVMDTADLDTPRNC--ERYL--NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMA---  140 (187)
T ss_dssp             EEEEEEECCC---CCCT--HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGG---
T ss_pred             EEEEEEECCCCCcchhH--HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchh---
Confidence            77889999964321111  1233  5789888888765 46777777777777543      444 66999999842   


Q ss_pred             CCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        233 CTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       233 ~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                        ....+   ..+...++.+..+++++
T Consensus       141 --~~~~v---~~~~~~~~~~~~~~~~~  162 (187)
T 3c5c_A          141 --QYRQV---TKAEGVALAGRFGCLFF  162 (187)
T ss_dssp             --GGCSS---CHHHHHHHHHHHTCEEE
T ss_pred             --hcCcc---CHHHHHHHHHHcCCcEE
Confidence              11111   13445667777776555

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.34  E-value=0.47  Score=41.14  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.....|+..+......-.++.|..|+||||++..+|..+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566666666554212256779999999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=88.33  E-value=0.38  Score=36.63  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .-+.++.|.+|+||||+.-++...|-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            34677789999999999999998885

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.26  E-value=0.58  Score=39.19  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...-.++.|..|+|||++|..+|..+.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            444566678999999999999998755

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=88.18  E-value=0.43  Score=48.17  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHH--HhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARV--LAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~--la~~~~g~~VlliD~D~~   89 (294)
                      .....|++.+.. ....+..+.|-||+||||+|..++..  .. ..-...+++++.+..
T Consensus       135 ~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd~gV~WVsVs~~  192 (1221)
T 1vt4_I          135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNC  192 (1221)
T ss_dssp             HHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHSSCEEEEECCCS
T ss_pred             HHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCCCcEEEEEeCCC
Confidence            445566666554 22345556689999999999999853  22 123446888888643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=88.17  E-value=0.31  Score=42.45  Aligned_cols=24  Identities=33%  Similarity=0.650  Sum_probs=20.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..++.|..|+||||++..+|..+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            456679999999999999999883

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=88.04  E-value=0.36  Score=41.62  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.+++ +.|.+|+||||+...|+..+.
T Consensus       126 Ge~va-IvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          126 KNCLA-FIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             CSEEE-EECSSSSSHHHHHHHHHHHHT
T ss_pred             CCEEE-EECCCCCcHHHHHHHHhhhcC
Confidence            34455 458899999999999999883

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=88.00  E-value=0.43  Score=43.12  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      -.++.|..|+|||++...+...+.  ..|.+|+++|..
T Consensus        55 h~~i~G~tGsGKs~~~~~li~~~~--~~g~~viv~Dpk   90 (437)
T 1e9r_A           55 HLLVNGATGTGKSVLLRELAYTGL--LRGDRMVIVDPN   90 (437)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHH--HTTCEEEEEEET
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCC
Confidence            445558889999999888888888  789999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=87.86  E-value=2.5  Score=31.54  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+...... .....+  ..+|.++++.+.+. .++......+..+...   ....+.+|.|+.|.
T Consensus        44 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  113 (164)
T 1r8s_A           44 ISFTVWDVGGQDKIRP-LWRHYF--QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL  113 (164)
T ss_dssp             CEEEEEECCCCGGGHH-HHHHHT--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EEEEEEEcCCChhhHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence            7899999996533211 122223  68999999887654 5677777666666432   12346789999884

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=87.70  E-value=0.35  Score=39.81  Aligned_cols=24  Identities=42%  Similarity=0.621  Sum_probs=20.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|-.|+||||++..|+..|.
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            445557799999999999999886

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=87.68  E-value=1.6  Score=39.37  Aligned_cols=64  Identities=19%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             ccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.|+|+|+....      ........+  ..+|.+|+|++.  ........++..+.+.+.+ +.+|+|+.|.
T Consensus        83 ~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl  152 (423)
T 3qq5_A           83 GPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDV  152 (423)
T ss_dssp             EEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTT
T ss_pred             CeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCC
Confidence            37899999964321      111223333  579999999987  3334567778888888777 4589999984

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=87.61  E-value=0.38  Score=44.25  Aligned_cols=39  Identities=26%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+..+.|.+|+||||+...|+..+.  ....+|.+-+.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~   68 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA   68 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence            4555669999999999999999998  77777877665543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=87.58  E-value=0.32  Score=39.49  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      -.++.|..|+||||+|..||..+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456779999999999999999887

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=87.43  E-value=0.6  Score=41.13  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=20.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..++.|..|+||||++..||..+.
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhC
Confidence            355668899999999999999876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=87.40  E-value=1.3  Score=34.41  Aligned_cols=65  Identities=12%  Similarity=0.077  Sum_probs=42.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.... .......+  ..+|.+|++.+.+. .++..+...+..+..    .+.+ +.+|.|+.|.
T Consensus        67 ~~~~l~Dt~G~~~~-~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl  136 (188)
T 1zd9_A           67 VTIKLWDIGGQPRF-RSMWERYC--RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDL  136 (188)
T ss_dssp             EEEEEEEECCSHHH-HTTHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred             EEEEEEECCCCHhH-HHHHHHHH--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCC
Confidence            78999999963211 11112222  57999999988754 567777766666543    2344 6789999984

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=87.39  E-value=0.92  Score=36.34  Aligned_cols=68  Identities=18%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             ccEEEEcCCCCCCh--------HHHHHH-HHhh-cCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD--------EHLSLV-QYLK-GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~--------~~~~~~-~~l~-~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....        ...... ..+. ...+|.++++++.....-.....+++.+...+.+ +.+|+|++|.
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl  156 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDK  156 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGG
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEecccc
Confidence            78999999963221        001111 1111 1347878888877643223445566777776666 5689999984

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=87.19  E-value=0.29  Score=45.44  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +..+.|..|+||||+...|+..+.  .....|.+-|.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~  296 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDT  296 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCc
Confidence            355668999999999999998887  54444444443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=87.14  E-value=0.44  Score=41.91  Aligned_cols=47  Identities=15%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             hHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        36 ~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ++.|..-+.-. +.+++++ |.+|+||||+...|+..+.  .....+.+++
T Consensus        59 ~~ald~ll~i~~Gq~~gIi-G~nGaGKTTLl~~I~g~~~--~~~g~i~~~G  106 (347)
T 2obl_A           59 VRAIDGLLTCGIGQRIGIF-AGSGVGKSTLLGMICNGAS--ADIIVLALIG  106 (347)
T ss_dssp             CHHHHHHSCEETTCEEEEE-ECTTSSHHHHHHHHHHHSC--CSEEEEEEES
T ss_pred             CEEEEeeeeecCCCEEEEE-CCCCCCHHHHHHHHhcCCC--CCEEEEEEec
Confidence            34444443332 5566666 7799999999999999987  4434444544

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=87.14  E-value=0.18  Score=42.36  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ..+..+-|.+|+||||+...|+..+.  . ..+|.+-+.|
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~   82 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKN   82 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEE
Confidence            33455558999999999999999887  5 5677664444

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=87.03  E-value=0.28  Score=41.96  Aligned_cols=39  Identities=31%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ....|+..+......-.++.|..|+||||++..++..+.
T Consensus        33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            344444444443211266778999999999999999986

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=86.99  E-value=0.66  Score=37.38  Aligned_cols=27  Identities=37%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.|..++||.|+||+|+|..+...+.
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g   36 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLG   36 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence            445666669999999999999887665

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=86.95  E-value=0.86  Score=38.26  Aligned_cols=42  Identities=19%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             ceEEEEEe-cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLS-GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s-~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ||-|.|++ .-+|.||=.+|+.|+..|.  .+|++|.++..||.-
T Consensus        23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk--~~G~~Vt~~K~DPYl   65 (295)
T 2vo1_A           23 MKYILVTGGVISGIGKGIIASSVGTILK--SCGLHVTSIKIDPYI   65 (295)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHH--HTTCCEEEEEEECSS
T ss_pred             ceEEEEcCCcccccccHHHHHHHHHHHH--HCCCcceeeecccce
Confidence            55555554 4579999999999999999  999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=86.93  E-value=0.47  Score=38.90  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.++.|..|+||||++..||..|.       +.++|.|.
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~   49 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGA   49 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-------CceecCCC
Confidence            444558899999999999988766       34677653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=86.89  E-value=0.5  Score=37.32  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=40.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+....... ....+  ..+|.+|++.+.+. .++..+..++..+....  ...+.+|.|+.|.
T Consensus        82 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl  150 (199)
T 3l0i_B           82 IKLQIWDTAGQERFRTI-TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  150 (199)
T ss_dssp             EEEEEECCTTCTTCCCC-SCC----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred             EEEEEEECCCcHhHHHH-HHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence            67999999963211000 01112  57899999987664 67777778888776553  2245688899984

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=86.88  E-value=0.43  Score=38.46  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=17.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHH
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARV   71 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~   71 (294)
                      ...++.|..|+||||+|..|+..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            34556689999999998877643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=86.80  E-value=0.5  Score=38.19  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             EEecCCCchHHHHHHHHHHHHh
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++-|..|+||+|.|..||..+.
T Consensus         4 il~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            4 VFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHC
Confidence            4448899999999999998877

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=86.72  E-value=0.43  Score=39.57  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.6

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..+|..+.
T Consensus        48 vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHcC
Confidence            45668899999999999998775

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=86.71  E-value=0.55  Score=36.47  Aligned_cols=88  Identities=13%  Similarity=0.010  Sum_probs=49.8

Q ss_pred             ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.|+|+|+.....     .......+....+|.++.+++..  +......++..+...+.+ +-+|.|+.|..     
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~-----  125 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLMEMGAN-LLLALNKMDLA-----  125 (188)
T ss_dssp             EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHTTTCC-EEEEEECHHHH-----
T ss_pred             cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHhcCCC-EEEEEEhhhcc-----
Confidence            678899999643210     00011111112478888888765  355566666777666666 45888998842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.    ...+++.+.++.+++
T Consensus       126 ~~~~~~----~~~~~~~~~~~~~~~  146 (188)
T 2wjg_A          126 KSLGIE----IDVDKLEKILGVKVV  146 (188)
T ss_dssp             HHTTCC----CCHHHHHHHHTSCEE
T ss_pred             ccccch----HHHHHHHHHhCCCeE
Confidence            111111    235666666776655

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=86.67  E-value=0.39  Score=39.75  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..++..+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45668999999999999998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=86.59  E-value=0.2  Score=47.35  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +..+++ -|.+|+||||+...|+..+.  ....+|.+-+.|..
T Consensus       369 G~~~~i-vG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~  408 (582)
T 3b60_A          369 GKTVAL-VGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLR  408 (582)
T ss_dssp             TCEEEE-EECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEcc
Confidence            444554 48899999999999999998  77778877555543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=86.54  E-value=0.52  Score=37.86  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .-+.++.|.+|+||||+.-++...|.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34777889999999999999999888

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=86.40  E-value=0.47  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .++.|..|+|||+++..+|..+.  .   ++..+++.
T Consensus        42 vll~G~~GtGKT~la~~la~~~~--~---~~~~~~~~   73 (262)
T 2qz4_A           42 ALLLGPPGCGKTLLAKAVATEAQ--V---PFLAMAGA   73 (262)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHT--C---CEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--C---CEEEechH
Confidence            45668899999999999998765  3   56666653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=86.27  E-value=0.89  Score=34.76  Aligned_cols=89  Identities=15%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-CCeeEEEeccccccCCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-IPIIGVVENMATFVCPKCTKPS  237 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~~~~~~~~~~  237 (294)
                      +.+.|+|+|+.-... ......+  ..+|.++++.+.+. .+...+..++..+.... ...+.+|.|+.|..     ...
T Consensus        58 ~~~~i~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~  129 (181)
T 3tw8_B           58 VKLQIWDTAGQERFR-TITSTYY--RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP-----ERK  129 (181)
T ss_dssp             EEEEEEEETTGGGCS-SCCGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG-----GGC
T ss_pred             EEEEEEcCCCchhhh-hhHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc-----hhc
Confidence            678999999632100 0011112  57898988887654 67777777777776543 23456889998842     111


Q ss_pred             ccCCCCchhHHHHHhhcCCcee
Q psy11347        238 EIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       238 ~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+   .......+.+..+.+++
T Consensus       130 ~~---~~~~~~~~~~~~~~~~~  148 (181)
T 3tw8_B          130 VV---ETEDAYKFAGQMGIQLF  148 (181)
T ss_dssp             CS---CHHHHHHHHHHHTCCEE
T ss_pred             cc---CHHHHHHHHHHcCCeEE
Confidence            11   12345566666676655

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=86.22  E-value=0.62  Score=39.82  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...++.|..|+||||++..+|..+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhC
Confidence            3455568899999999999998665

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=86.22  E-value=0.3  Score=44.02  Aligned_cols=26  Identities=35%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHH
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVL   72 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~l   72 (294)
                      ...+.++.|-.|+||||++..|+..+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            45677778999999999998887544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	2e-30
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	4e-22
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	6e-21
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	2e-20
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	1e-18
d1byia_	224	c.37.1.10 (A:) Dethiobiotin synthetase {Escherichi	5e-18
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	8e-14
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	1e-09
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	2e-07
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	6e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	9e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.001
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.003
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.004
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	0.004
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (282), Expect = 2e-30
 Identities = 33/263 (12%), Positives = 81/263 (30%), Gaps = 34/263 (12%)

Query: 33  DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD----- 87
            P +  +   ++  +H +++L GKGGVGK+T    +A  LA       V +   D     
Sbjct: 5   IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFD--VHLTTSDPAAHL 62

Query: 88  --ICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNT 145
                 S+  +     +   ++      V   +   +   G      ++ +     ++  
Sbjct: 63  SMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAG--KRLLEEDLRSPCTEEIA 120

Query: 146 MIRQFLSEVDWGNGLEYLLIDTPPGTS----------------------DEHLSLVQYLK 183
           + + F   +       ++++DT P                             + +  L+
Sbjct: 121 VFQAFSRVIREAGK-RFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQ 179

Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKD 243
                  ++VT P+   +L+         +  I   G + N +  +    +    +  + 
Sbjct: 180 DPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQ 239

Query: 244 SGGAEKMCAELSVPFLGSVPIDP 266
                +         +  VP+  
Sbjct: 240 ELPQIESVKRQHASRVALVPVLA 262

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 91.6 bits (226), Expect = 4e-22
 Identities = 33/273 (12%), Positives = 85/273 (31%), Gaps = 57/273 (20%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD-------ICGPSMPRMMGLLN 101
             L  +GKGGVGK++ +   A  LA+  +   V ++  D       +   ++   +  + 
Sbjct: 9   PYLFFTGKGGVGKTSISCATAIRLAEQGKR--VLLVSTDPASNVGQVFSQTIGNTIQAIA 66

Query: 102 EQVHQSASGWSPVFLEE--------NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLS- 152
                SA    P    +         +  +    +++S ++ +      +     +F   
Sbjct: 67  SVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGL 126

Query: 153 --EVDWGNGLEYLLIDTPPGTSDEHL-----SLVQYLKGLPDI----------------- 188
             +       ++++ DT P      L     +   ++   P+                  
Sbjct: 127 LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQY 186

Query: 189 -------------GAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTK 235
                          ++V   Q+ +L +V +       + +    +V N           
Sbjct: 187 AYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAND 246

Query: 236 P--SEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266
              + I+ ++      + A+L+     ++ + P
Sbjct: 247 TLAAAIWEREQEALANLPADLAGLPTDTLFLQP 279

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 88.0 bits (217), Expect = 6e-21
 Identities = 40/255 (15%), Positives = 82/255 (32%), Gaps = 21/255 (8%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
           +   + GKGG+GKST T  L   LA+  +   V ++  D    S   ++    +      
Sbjct: 3   RQCAIYGKGGIGKSTTTQNLVAALAEMGKK--VMIVGCDPKADSTRLILHSKAQNTIMEM 60

Query: 109 SGWSPVFLE-ENLSVMSIGFL------LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE 161
           +  +    + E   V+  G+          P+  V   G    T I     E  + + L+
Sbjct: 61  AAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLD 120

Query: 162 YLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGV 221
           ++  D          ++        +I   +V + + +++           K        
Sbjct: 121 FVFYDVLGDVVCGGFAMPIRENKAQEI--YIVCSGEMMAMYAANNISKGIVKYA------ 172

Query: 222 VENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-- 279
             N  +         S    ++      +  +L    +  VP D +V R      + I  
Sbjct: 173 --NSGSVRLGGLICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEY 230

Query: 280 DTPSACVDAIQQIVQ 294
           D  +   D  + + +
Sbjct: 231 DPKAKQADEYRALAR 245

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 86.5 bits (213), Expect = 2e-20
 Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 31/259 (11%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
           + + + GKGG+GKST T  L   L    ++  + V+  D    S   ++G L ++     
Sbjct: 2   RQVAIYGKGGIGKSTTTQNLTSGLHAMGKT--IMVVGCDPKADSTRLLLGGLAQKSVLDT 59

Query: 109 SGWSPVFLE---------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNG 159
                  +E           +  +  G            RG   +  + + L        
Sbjct: 60  LREEGEDVELDSILKEGYGGIRCVESGGPEP--GVGCAGRGIITSINMLEQLGAYTD--D 115

Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD-VRKEIDFCRK-VNIP 217
           L+Y+  D          ++        +I  +       +   + + K I    K   + 
Sbjct: 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVR 175

Query: 218 IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
           + G++ N                            EL    +  VP  P+VT+      +
Sbjct: 176 LGGIICNSRKVANEYELLD------------AFAKELGSQLIHFVPRSPMVTKAEINKQT 223

Query: 278 AIDTP--SACVDAIQQIVQ 294
            I+        +  +++ +
Sbjct: 224 VIEYDPTCEQAEEYRELAR 242

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 80.9 bits (198), Expect = 1e-18
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 22/247 (8%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
           + ++SGKGG GK+T T  L+  L        V  +D D+   ++  ++G+ +  V     
Sbjct: 5   ISIVSGKGGTGKTTVTANLSVALGDRGRK--VLAVDGDLTMANLSLVLGVDDPDVTLHDV 62

Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
                 +E+ + +     +   P         K +      + +       +++LID P 
Sbjct: 63  LAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDK-FDFILIDCPA 121

Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV 229
           G   + +S +   +    +    ++                  KV I +      +  FV
Sbjct: 122 GLQLDAMSAMLSGEEALLVTNPEISCLT------------DTMKVGIVLKKAGLAILGFV 169

Query: 230 CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI--DTPSACVD 287
             +  +     P      E     + VP L  +P DP +     EG  A+     S    
Sbjct: 170 LNRYGRSDRDIPP-----EAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAK 224

Query: 288 AIQQIVQ 294
           A  ++ +
Sbjct: 225 AFVKLAE 231

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

 Score = 79.0 bits (193), Expect = 5e-18
 Identities = 23/231 (9%), Positives = 53/231 (22%), Gaps = 20/231 (8%)

Query: 49  KVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQS 107
           K   ++G    VGK+  +  L +    +              G          ++ +   
Sbjct: 2   KRYFVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKPVASGSEKTPEGLRNSDALALQ 59

Query: 108 ASGWSPVFLEE---NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLL 164
            +    +                 + S  +         +  +R    + DW      + 
Sbjct: 60  RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWV----LVE 115

Query: 165 IDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN 224
                 T                +  I+V   +   +          +   + + G V N
Sbjct: 116 GAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVAN 175

Query: 225 MATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
             T    +  +              +   +  P LG +P       +   G
Sbjct: 176 DVTPPGKRHAE----------YMTTLTRMIPAPLLGEIPWLAENPENAATG 216

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 67.5 bits (163), Expect = 8e-14
 Identities = 47/247 (19%), Positives = 84/247 (34%), Gaps = 23/247 (9%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
           + V SGKGG GK+T T  L   LA+     DV ++D DI   ++  ++G+    V     
Sbjct: 4   ITVASGKGGTGKTTITANLGVALAQLGH--DVTIVDADITMANLELILGMEGLPVTLQNV 61

Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
                        +     +      V+  G     + +    +++          D   
Sbjct: 62  LAGEAR-------IDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILL 114

Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV 229
             +   L     +        ++V  P+  S+ D  K      ++   ++GVV N  T +
Sbjct: 115 LDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174

Query: 230 CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI--DTPSACVD 287
             +  K             ++ A L    +G +P DP V R    G   +     S    
Sbjct: 175 GIEMAKN------------EIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAAR 222

Query: 288 AIQQIVQ 294
           AI ++  
Sbjct: 223 AIVELAN 229

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 13/186 (6%)

Query: 47  KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
              +  L G  G GK+T    LA             ++  D   P+    + LL E+V  
Sbjct: 9   DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR--PLLVAADTQRPAAREQLRLLGEKVGV 66

Query: 107 ----SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEY 162
                  G SP  +   +   +     +        R      ++ +     +     E 
Sbjct: 67  PVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV 126

Query: 163 LLIDTPPGTSDEHLSLVQ-YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI--I 219
           LL+     T  E LS+ + + + +   G ++     +         +        PI   
Sbjct: 127 LLVL-DAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA---LSARHVTGKPIYFA 182

Query: 220 GVVENM 225
           GV E  
Sbjct: 183 GVSEKP 188

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI-CGPSMPRMMGLL------- 100
           + + L+G  GVGK+T  +  + VL  S   VD    +     G  +   +  L       
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61

Query: 101 -------NEQVHQSASGWSPVFLEENLSVMSIGF------LLNSPDDAVIWRGPKKNTMI 147
                       +   G   V L     +                   VI    K     
Sbjct: 62  SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

Query: 148 RQFLS-EVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-DVR 205
           + F+       +    +++ T P    + L+LV+ ++   D+    VT      LL D+ 
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181

Query: 206 KEIDFCRK 213
             +   RK
Sbjct: 182 TCVQSSRK 189

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 28/176 (15%)

Query: 47  KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
           K  V+   G  G+GK+T    ++  L      +    +        +   +      + +
Sbjct: 26  KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP----ITKVKGKIF----FLPE 77

Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWR-------------GPKKNTMIRQFLSE 153
                  + +E+ L  ++  + +    + ++               G      IR+    
Sbjct: 78  EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLA 137

Query: 154 VDWGNGLEYLLIDTP-----PGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204
                  E  ++D P       +  + L  +  +  L + G +++++ +E+S  DV
Sbjct: 138 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI--LKEKGIVIISSREELSYCDV 191

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 3/135 (2%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM-PRMMGLLNEQVHQSA 108
           ++V+ G    GK+  +  L R L      V     ++      M                
Sbjct: 4   LIVMVGLPARGKTYISKKLTRYLNF--IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 109 SGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168
                             FL        ++         R  +      NG +   +++ 
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 169 PGTSDEHLSLVQYLK 183
               +   + +  +K
Sbjct: 122 CVDPEVIAANIVQVK 136

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
          +N  H + VL G  G GKS   + +A  L
Sbjct: 2  TNHDHHIYVLMGVSGSGKSAVASEVAHQL 30

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
          +KV+V++G  GVG +T + L    L K   +  +
Sbjct: 1  NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 3/125 (2%)

Query: 47  KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
           K  V ++ G  G GKST  N++   L      V     + DI       +      +  Q
Sbjct: 29  KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE--NKDITNKEPAELYHYGIVRTFQ 86

Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLID 166
           +      + + ENL +  I    +  +     +   K   + +   ++     L +L  D
Sbjct: 87  TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-D 145

Query: 167 TPPGT 171
              G 
Sbjct: 146 RKAGE 150

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 45  NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ 103
           ++   +L+LSG  G GKST    LA +            L   I    +   +   ++Q
Sbjct: 1   DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ 59

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG 98
            ++++L+G    GKS     L  VL +   +  V  L   +         G
Sbjct: 2  TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGG 53

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 50  VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
           ++ ++G   VGKST   +L  +L++  E   V ++  D
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 12/156 (7%)

Query: 49  KVLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQ 103
            +L  +   G GK+T    L   L                +D+D  G     +      Q
Sbjct: 3   PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQ 62

Query: 104 VHQSASGWSPVFLEENLSVMS-----IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGN 158
              ++     +  E               +  S  D ++  G K   + +  L     G+
Sbjct: 63  TIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 122

Query: 159 GLEYLLIDTPPGT--SDEHLSLVQYLKGLPDIGAIV 192
             E L+ID       SD  L+L   L  + D+  + 
Sbjct: 123 RPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLA 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	100.0
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	100.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.97
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.97
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	99.86
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.84
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.83
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.11
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.08
d1okkd2	207	GTPase domain of the signal recognition particle r	99.06
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.95
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.93
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.68
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.44
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.23
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.23
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.89
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.85
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.79
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.72
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.63
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.53
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.48
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.47
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.33
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.33
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.28
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.22
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.18
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.16
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.15
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.09
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.06
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.05
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.02
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.99
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.93
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.87
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.76
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.71
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	96.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.7
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.68
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.64
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.6
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.55
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.54
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.49
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.47
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.44
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.41
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.32
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.26
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.2
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.19
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.18
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.14
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.1
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.07
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.0
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.83
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.63
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.58
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.57
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.56
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.37
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.27
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.22
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.12
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.07
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.98
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.88
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.85
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.74
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.72
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.68
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.51
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.5
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.42
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.35
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.23
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.19
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.14
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.04
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.84
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.76
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.63
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.62
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.6
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.36
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	93.17
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.13
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	93.08
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.03
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.98
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.96
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.96
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.75
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.68
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.68
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	92.6
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.55
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.54
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.49
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.36
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.34
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.24
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.08
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.55
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	91.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.4
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.39
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.35
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.35
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.1
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.95
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.93
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	90.64
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.32
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.3
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.28
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	90.27
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.24
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.18
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.01
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	89.97
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.52
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	89.49
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.45
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	89.28
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.08
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.99
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	88.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	88.74
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.65
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	88.54
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	88.42
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.39
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.18
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	88.16
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.11
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	87.73
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.72
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	87.41
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.26
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.15
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.03
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	86.97
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	86.65
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	86.56
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.37
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	86.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.13
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.41
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	85.16
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	85.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	85.06
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.98
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	84.95
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	84.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	84.87
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	84.83
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.65
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	84.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.1
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	84.08
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	83.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	83.65
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	83.46
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	83.23
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	83.04
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	82.86
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	82.85
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.75
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	82.64
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	82.54
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	82.44
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	82.31
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	82.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.79
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	81.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	81.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	81.1
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	81.01
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	80.85
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	80.79
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	80.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	80.4
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.36
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	80.32
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.21

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.6e-35  Score=245.78  Aligned_cols=220  Identities=23%  Similarity=0.315  Sum_probs=177.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc-----ccccCCCCcc--eeccC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV-----HQSASGWSPV--FLEEN  119 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~-----~~~~~~~~~~--~~~~~  119 (294)
                      ||+|+|+|+|||+||||+|.|||.+|+  +.|++|++||+|+++++++.++|.+....     ......+++.  ....+
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la--~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGG   78 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGG
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHhCCCcCcchhhhhhccccccccccccCCcc
Confidence            689999999999999999999999999  89999999999999999999999776421     1222233332  23478


Q ss_pred             eEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347        120 LSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV  199 (294)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~  199 (294)
                      ++++|.+.....       ........+.++++.+.  +.||+||+|+|++........+     ..+|.+++|+.++..
T Consensus        79 ~~~l~~~~~~~~-------~~~~~~~~l~~~l~~l~--~~~D~viiD~~~~~~~~~~~~l-----~~ad~v~~v~~~~~~  144 (232)
T d1hyqa_          79 VKVVPAGVSLEG-------LRKANPEKLEDVLTQIM--ESTDILLLDAPAGLERSAVIAI-----AAAQELLLVVNPEIS  144 (232)
T ss_dssp             CEEEECCSCHHH-------HHHHCHHHHHHHHHHHH--HTCSEEEEECCSSSSHHHHHHH-----HHSSEEEEEECSSHH
T ss_pred             ceeEeeeccccc-------ccccchhhHHHHHHHHh--hccceeeecccccccchhHHHh-----hhhheeeeecccccc
Confidence            888887643221       11223457788888887  3499999999999987655444     468999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcccc
Q psy11347        200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI  279 (294)
Q Consensus       200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~  279 (294)
                      ++..+.+.+..+++.+.+..++|+||++..      .      .....+++.+.++.+++++||+++.+.++.+.|+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~------~------~~~~~~~i~~~~~~~~~~~IP~d~~~~~a~~~g~p~~  212 (232)
T d1hyqa_         145 SITDGLKTKIVAERLGTKVLGVVVNRITTL------G------IEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVV  212 (232)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEEEEECTT------T------HHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHH
T ss_pred             chhhhhhhhhhhhhcccccccccccccccc------c------ccchhhhHHhhcCCeEEEECCCCHHHHHHHHCCceEE
Confidence            999999999999999999999999998621      1      1223467777789999999999999999999999999


Q ss_pred             c--CCCHHHHHHHHhhC
Q psy11347        280 D--TPSACVDAIQQIVQ  294 (294)
Q Consensus       280 ~--~~s~~~~~~~~la~  294 (294)
                      +  |+++++++|++||+
T Consensus       213 ~~~p~s~~a~~~~~lA~  229 (232)
T d1hyqa_         213 LRSPNSPAARAIVELAN  229 (232)
T ss_dssp             HHCTTSHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHH
Confidence            8  99999999999984

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2e-33  Score=236.76  Aligned_cols=221  Identities=23%  Similarity=0.322  Sum_probs=168.1

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc--c---ccCCCCcce---ec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH--Q---SASGWSPVF---LE  117 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~--~---~~~~~~~~~---~~  117 (294)
                      |+++|+|+|+|||+||||+|.|||.+|+  ..|++|+++|+|++.++++.++|.......  .   ....++...   ..
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la--~~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~   78 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQF   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeCCCCCCChhHHhCCCCcccchhhhccCCCcHHHhhhcccc
Confidence            7899999999999999999999999999  899999999999999999999986654211  1   111111111   11


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      .+....+.+....       .........+.+++..++  ++||+||+|+|++++......+     ..+|.+++|+.++
T Consensus        79 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~--~~~d~IiiD~~~~~~~~~~~~l-----~~aD~viiv~~~~  144 (237)
T d1g3qa_          79 DNVYVLPGAVDWE-------HVLKADPRKLPEVIKSLK--DKFDFILIDCPAGLQLDAMSAM-----LSGEEALLVTNPE  144 (237)
T ss_dssp             TTEEEECCCCSHH-------HHHHCCGGGHHHHHHTTG--GGCSEEEEECCSSSSHHHHHHH-----TTCSEEEEEECSC
T ss_pred             ccccccccccchh-------hhhhhhhHHHHHHHHHHH--hcCCEEEEcccccccccchhhh-----hhhhccccccccc
Confidence            3344443322111       011122346777888877  4499999999999987655444     6799999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcc
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS  277 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~  277 (294)
                      ..++..+.++++.+++.+++..++|+||++.      ...++.      .....+..+.++++.||+++.+.++...|+|
T Consensus       145 ~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~------~~~~~~------~~~~~~~~~~~~~~~IP~d~~v~~a~~~g~~  212 (237)
T d1g3qa_         145 ISCLTDTMKVGIVLKKAGLAILGFVLNRYGR------SDRDIP------PEAAEDVMEVPLLAVIPEDPAIREGTLEGIP  212 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEEEEETS------CTTCCC------HHHHHHHHCSCEEEEEECCHHHHHHHHHTSC
T ss_pred             ceecchhhHHHHHHhhhhhhhhhhhhccccc------ccchhh------hHHHHhhcCceEEEEeCCCHHHHHHHHcCce
Confidence            9999999999999999999999999999863      122221      1233334588999999999999999999999


Q ss_pred             ccc--CCCHHHHHHHHhhC
Q psy11347        278 AID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       278 v~~--~~s~~~~~~~~la~  294 (294)
                      +++  |+++++++|++||+
T Consensus       213 v~~~~p~s~~a~~~~~la~  231 (237)
T d1g3qa_         213 AVKYKPESKGAKAFVKLAE  231 (237)
T ss_dssp             HHHHSTTSHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHH
Confidence            998  99999999999974

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.97  E-value=3.5e-32  Score=233.91  Aligned_cols=227  Identities=17%  Similarity=0.173  Sum_probs=165.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc-------CCCCcce--ec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA-------SGWSPVF--LE  117 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~-------~~~~~~~--~~  117 (294)
                      ||+|+|+ |||||||||+|.|||.+|+  ..|+||++||+|++++++..+++..........       ...+.+.  ..
T Consensus         1 mr~Iai~-gKGGvGKTT~a~nLA~~LA--~~G~rVllID~D~q~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (269)
T d1cp2a_           1 MRQVAIY-GKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGY   77 (269)
T ss_dssp             CEEEEEE-ECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECG
T ss_pred             CCEEEEE-CCCcCCHHHHHHHHHHHHH--hCCCcEEEEecCCCCCchhhhhCCCcccchhhhhhhcccccccceEEEecC
Confidence            6889996 5999999999999999999  899999999999998888888876655321110       0111111  12


Q ss_pred             cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347        118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~  197 (294)
                      ..++.++.+.........  .........+.+.+..+.  +.||+|++|+|++............  ..+|.+++|+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~--~~~D~viiD~p~~~~~~~~~~~~~~--~~ad~vliv~~~~  151 (269)
T d1cp2a_          78 GGIRCVESGGPEPGVGCA--GRGIITSINMLEQLGAYT--DDLDYVFYDVLGDVVCGGFAMPIRE--GKAQEIYIVASGE  151 (269)
T ss_dssp             GGCEEEECCCCCTTSSCH--HHHHHHHHHHHHHTTCCC--TTCSEEEEEEECSSCSTTTTHHHHT--TSCCEEEEEECSS
T ss_pred             CceEEeccCcchhhhhhc--ccchHHHHHHHHHHHHhh--ccCCEEEeccCCccchhHHHHHHHh--hccCceeeccchh
Confidence            456777765443322111  111112223444444444  4599999999987754333233222  5789999999999


Q ss_pred             hhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347        198 EVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD  273 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~  273 (294)
                      ..++..+.++++.++.    .+.+..++|+|+.+..            ...+.++++.+.+|.++++.||+++.+.++..
T Consensus       152 ~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~------------~~~~~~~~~~~~~~~~~~~~IP~d~~i~~a~~  219 (269)
T d1cp2a_         152 MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA------------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEI  219 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS------------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhccccceeccceEEeeecCC------------CccchhhhhHhhcCCeEEEEEecCHHHHHHHH
Confidence            9999999998888864    3456788999997631            22456788888999999999999999999999


Q ss_pred             CCccccc--CCCHHHHHHHHhhC
Q psy11347        274 EGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       274 ~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      .|+|+++  |+|+++++|++||+
T Consensus       220 ~g~~v~~~~p~s~~a~~~~~La~  242 (269)
T d1cp2a_         220 NKQTVIEYDPTCEQAEEYRELAR  242 (269)
T ss_dssp             TTSCHHHHCTTSHHHHHHHHHHH
T ss_pred             CCCCeEEECcCCHHHHHHHHHHH
Confidence            9999998  99999999999974

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.97  E-value=3.6e-32  Score=236.28  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=163.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccc----ccCCCCc-----c--e
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ----SASGWSP-----V--F  115 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~----~~~~~~~-----~--~  115 (294)
                      |++|+| ++||||||||+|.|||.+|+  ..|+||++||+|+|++++..+++........    ......+     +  .
T Consensus         2 Mr~Iai-sgKGGVGKTT~a~NLA~~LA--~~G~rVLlID~DpQ~~st~~~l~~~~~~~~~~~~~~~~~~~d~~~~~v~~~   78 (289)
T d2afhe1           2 MRQCAI-YGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKA   78 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEE
T ss_pred             ccEEEE-ECCCCCCHHHHHHHHHHHHH--HCCCCEEEEecCCCCCcchhhcCCCCCCchhhhhhccCcccccccceeEec
Confidence            678887 67999999999999999999  8999999999999998877777765542111    1111111     1  1


Q ss_pred             eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347        116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT  195 (294)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~  195 (294)
                      ...+++.+|.+..........  ........+...+..+.  ++||||++|+||+........+...  ..+|.+++|+.
T Consensus        79 ~~~~i~~i~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~D~iiiD~pp~~~~~~~~~~~~~--~~a~~vlv~~~  152 (289)
T d2afhe1          79 GYGGVKCVESGGPEPGVGCAG--RGVITAINFLEEEGAYE--DDLDFVFYDVLGDVVCGGFAMPIRE--NKAQEIYIVCS  152 (289)
T ss_dssp             CGGGCEEEECCCCCTTTCCHH--HHHHHHHHHHHHTTCSS--TTCSEEEEEEECSSCCTTTTHHHHT--TCCCEEEEEEC
T ss_pred             ccccceeeccCCchhhhhhhh--cchHHHHHHHHHHHHhh--ccCCeEeeccCCccCHHHHHHHHHh--hccceeecccc
Confidence            235677777764433332111  00111113334444443  4599999999998754333333222  57899999999


Q ss_pred             CchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347        196 PQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH  271 (294)
Q Consensus       196 ~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a  271 (294)
                      ++..++..+.++++.+.+    .+.+..++|+|+++.            ....+..+++.+.+|.++++.||++..+.+|
T Consensus       153 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~------------~~~~~~~~~~~~~~g~~vl~~IP~~~~v~eA  220 (289)
T d2afhe1         153 GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT------------DREDELIIALANKLGTQMIHFVPRDNVVQRA  220 (289)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC------------TTHHHHHHHHHHHHTSCEEEEECCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcc------------hhhHHHHHHHHHHcCCeEEEEEeccHHHHHH
Confidence            999999999888888754    346678999999752            1123456788888999999999999999999


Q ss_pred             ccCCccccc--CCCHHHHHHHHhhC
Q psy11347        272 CDEGTSAID--TPSACVDAIQQIVQ  294 (294)
Q Consensus       272 ~~~g~~v~~--~~s~~~~~~~~la~  294 (294)
                      ...|+|+++  |+|+++++|++||+
T Consensus       221 ~~~g~pv~~~~p~S~~a~~y~~LA~  245 (289)
T d2afhe1         221 EIRRMTVIEYDPKAKQADEYRALAR  245 (289)
T ss_dssp             HHTTSCHHHHCTTSHHHHHHHHHHH
T ss_pred             HHcCCceEEECcCCHHHHHHHHHHH
Confidence            999999999  99999999999984

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.1e-22  Score=174.23  Aligned_cols=181  Identities=15%  Similarity=0.156  Sum_probs=108.3

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcce---ec---
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVF---LE---  117 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~---~~---  117 (294)
                      .+|++ |.|++|||||||||+|+|||.+|+  .+|+||++||+|++ ++++.+||.+...............   ..   
T Consensus         5 ~~~p~-~i~~sGKGGVGKTTvaa~lA~~lA--~~G~rVLlvD~Dp~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   80 (296)
T d1ihua1           5 QNIPP-YLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQA   80 (296)
T ss_dssp             SSCCS-EEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTT-CCHHHHTTSCCCSSCEECTTSTTEEEEECCHHH
T ss_pred             CCCCe-EEEEECCCcChHHHHHHHHHHHHH--HCCCCEEEEeCCCC-CCHHHHhCCCCcccccccccccccchhccChhh
Confidence            44444 557799999999999999999999  89999999999996 5889999876543222111111100   00   


Q ss_pred             ----------cCeEEEecccccCCCCcceeecCccchHHHHHHHH---hhccCCCccEEEEcCCCCCChHH---------
Q psy11347        118 ----------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLS---EVDWGNGLEYLLIDTPPGTSDEH---------  175 (294)
Q Consensus       118 ----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~l~~~~~yd~IiiD~p~~~~~~~---------  175 (294)
                                +++...+......................+.+++.   .....++||+||+|+||+.+.-.         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~iviD~pp~~~~l~~~~l~~~~~  160 (296)
T d1ihua1          81 AAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWS  160 (296)
T ss_dssp             HHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGT
T ss_pred             HHHHHHhhccchhhhcccccchhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhcccceEEEeccCCCchHHHHHhHHHHHH
Confidence                      01110000000000000000000000011222222   11111249999999998653211         


Q ss_pred             --------------------------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        176 --------------------------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       176 --------------------------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                                                ......+.....+.+++|++|+..++..+.++++.+++.+++..++|+||+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v~p  239 (296)
T d1ihua1         161 SFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP  239 (296)
T ss_dssp             CCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred             HHHhhccchhhhcccccchhHHHHHHHHHHhhccCcccceeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCCcC
Confidence                                      11122222234467899999999999999999999999999999999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.5e-22  Score=168.87  Aligned_cols=190  Identities=18%  Similarity=0.234  Sum_probs=113.8

Q ss_pred             CCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCC
Q psy11347         31 SVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASG  110 (294)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~  110 (294)
                      |+-|.+..+..++....++|.+++|||||||||+|+|||.+|+  ..|+||++||+|++. ++..+||............
T Consensus         3 ~~~~~~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA--~~G~rVllvD~Dp~~-~l~~~lg~~~~~~~~~~~~   79 (279)
T d1ihua2           3 PDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA--DMGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRID   79 (279)
T ss_dssp             CCCCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESCCC------------CCEEEEECC
T ss_pred             CCCccHHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCCCC-ChHHHhCCccccccccccc
Confidence            4458899999999999999999999999999999999999999  899999999999974 6778787654421111000


Q ss_pred             --------CCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH-
Q psy11347        111 --------WSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY-  181 (294)
Q Consensus       111 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~-  181 (294)
                              +.......+....+.+....  .................+...+...+ ||++++|+|++...  ...+.. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~d~~~~~~~--~~~l~~~  154 (279)
T d1ihua2          80 PHEETERYRQHVLETKGKELDEAGKRLL--EEDLRSPCTEEIAVFQAFSRVIREAG-KRFVVMDTAPTGHT--LLLLDAT  154 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHH--HHHTTSHHHHHHHHHHHHTTTGGGGG-TSEEEESCCCCHHH--HHHHHHC
T ss_pred             cchhhHHHHHhhhhcccccccccccccc--hhhhcccchHHHHHHHHHHHHHhhcc-cccccccCCCchhH--HHHHHHH
Confidence                    00000001111111110000  00000000011111222223333334 99999999985321  111111 


Q ss_pred             -----------------------hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        182 -----------------------LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       182 -----------------------l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                                             +.....|.+++|+.++..+...+.++++.+.+.+.+..++|+||+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~~~  224 (279)
T d1ihua2         155 GAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLS  224 (279)
T ss_dssp             ------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred             HHHHhhHHHHhcchhhHHHHhhhccccccccceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCCcc
Confidence                                   11124577999999999999999999999999999999999999763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-20  Score=154.94  Aligned_cols=211  Identities=13%  Similarity=0.085  Sum_probs=131.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc--ccccCCCCcceeccCeEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV--HQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~--~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      |++.|.+...||||||+|.+||.+|+  ++|+||+++|.|++++ ....++......  ......+..............
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa--~~G~rVl~id~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK--AAGYRTAGYKPVASGS-EKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAE   78 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH--HTTCCEEEECSEEESC-BCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEECccccCC-CCCCCCcchhHHHHHHHhhccCccccccccccccc
Confidence            45555544459999999999999999  8999999999998763 344444443321  111111111111101111000


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVS  200 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s  200 (294)
                      .... . ..............+.+.+....  ..||++++|+++.....     ....+...   ....+++|+.+....
T Consensus        79 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~V~~~~~~~  151 (224)
T d1byia_          79 PTSP-H-IISAQEGRPIESLVMSAGLRALE--QQADWVLVEGAGGWFTPLSDTFTFADWVTQ---EQLPVILVVGVKLGC  151 (224)
T ss_dssp             CSCH-H-HHHHHHTCCCCHHHHHHHHHHHH--TTCSEEEEECSSSTTCEEETTEEHHHHHHH---HTCCEEEEEECSTTH
T ss_pred             chhh-h-hhhhhhhhhhhHHHHHHHHhhhh--hccceEeecccccccccccccchhhccccc---ccceeeEEEeeccch
Confidence            0000 0 00000011223335566666655  33999999999655311     01112111   234578888899999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccc
Q psy11347        201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA  278 (294)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v  278 (294)
                      ...+....+.+++.+....|+|+|+++.+       ...   ..+.++.+.+.+|++++++||+.++..+....|+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~gvv~N~~~~~-------~~~---~~~~~~~l~~~~gi~vlG~IP~~~~~~e~~~~~~~l  219 (224)
T d1byia_         152 INHAMLTAQVIQHAGLTLAGWVANDVTPP-------GKR---HAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYI  219 (224)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEECCSSC-------CTT---HHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGC
T ss_pred             hHHHHHHHHHHhccCCccEEEEEeCcCCC-------chH---HHHHHHHHHHHhCCCEEEECCCCCCCcccccccccc
Confidence            99999999999999999999999998742       221   245678888889999999999999888877776543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.11  E-value=6.2e-10  Score=89.77  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL  128 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (294)
                      .|.++.|..||||||.++-||.+++  ++|++|.++.+|.........+....+              .-++.+....  
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~--~~g~kV~lit~Dt~R~gA~eQL~~~a~--------------~l~v~~~~~~--   72 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLLGE--------------KVGVPVLEVM--   72 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHHHHH--------------HHTCCEEECC--
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEecccccchHHHHHHHHHH--------------hcCCcccccc--
Confidence            3445569999999999999999999  889999999999876443222221110              0122222111  


Q ss_pred             cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHh-hcCCCcEEEEecCCchhhHHHHH
Q psy11347        129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYL-KGLPDIGAIVVTTPQEVSLLDVR  205 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l-~~~~ad~vliv~~~~~~s~~~~~  205 (294)
                        +..        .............+..+ +|+||||+++...  .+.+..+..+ .....+.+++|...... .....
T Consensus        73 --~~~--------~~~~~~~~~~~~~~~~~-~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~-~~~~~  140 (207)
T d1ls1a2          73 --DGE--------SPESIRRRVEEKARLEA-RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-QEALS  140 (207)
T ss_dssp             --TTC--------CHHHHHHHHHHHHHHHT-CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-HHHHH
T ss_pred             --ccc--------hhhHHHHHHHHHHhhcc-CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccc-hhHHH
Confidence              000        11112222222222224 9999999996442  2222222222 11356777777765443 33334


Q ss_pred             HHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        206 KEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       206 ~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ....+.+..++.  ++|+++.|..            .....+-.+....++|+.
T Consensus       141 ~~~~f~~~~~~~--~~I~TKlDe~------------~~~G~~l~~~~~~~~Pi~  180 (207)
T d1ls1a2         141 VARAFDEKVGVT--GLVLTKLDGD------------ARGGAALSARHVTGKPIY  180 (207)
T ss_dssp             HHHHHHHHTCCC--EEEEECGGGC------------SSCHHHHHHHHHHCCCEE
T ss_pred             HHHHHHhhCCCC--eeEEeecCcc------------ccchHHHHHHHHHCCCEE
Confidence            333344445555  8999999831            122344455566777764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.4e-09  Score=86.24  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=96.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF  127 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (294)
                      +.|.++.|..||||||.++-||..+.  +.|++|.++-+|.....-...+...              ...-++.+.... 
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~--~~g~kV~lit~Dt~R~gA~eQL~~~--------------a~~l~v~~~~~~-   71 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVW--------------GQRNNIPVIAQH-   71 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEECCCTTCHHHHHHHHHH--------------HHHTTCCEECCS-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEecccccccchhhhhhh--------------hhhcCCcccccc-
Confidence            34555558899999999999999999  8899999999998753322211110              011222222211 


Q ss_pred             ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhhc--C-----CCcEEEEecCCch
Q psy11347        128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLKG--L-----PDIGAIVVTTPQE  198 (294)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~~--~-----~ad~vliv~~~~~  198 (294)
                                 ........+.+.++..+..+ ||+|||||++....+  .+..+..+..  .     ..+.+++|.+...
T Consensus        72 -----------~~~d~~~~l~~~~~~a~~~~-~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~  139 (211)
T d2qy9a2          72 -----------TGADSASVIFDAIQAAKARN-IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST  139 (211)
T ss_dssp             -----------TTCCHHHHHHHHHHHHHHTT-CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG
T ss_pred             -----------cCCCHHHHHHHHHHHHHHcC-CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhccc
Confidence                       11122335566666554334 999999999644321  1222222211  1     2345666664433


Q ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       ..+.+.......+..++.  ++|+++.|..       .     ....+-.+....++|+.
T Consensus       140 -~~~~~~~~~~~~~~~~~~--~lIlTKlDe~-------~-----~~G~~l~~~~~~~~Pi~  185 (211)
T d2qy9a2         140 -GQNAVSQAKLFHEAVGLT--GITLTKLDGT-------A-----KGGVIFSVADQFGIPIR  185 (211)
T ss_dssp             -THHHHHHHHHHHHHSCCC--EEEEECCTTC-------T-----TTTHHHHHHHHHCCCEE
T ss_pred             -CcchHHHHhhhhhccCCc--eEEEeecCCC-------C-----CccHHHHHHHHHCCCEE
Confidence             344555566666666655  9999999831       1     12234455556777766

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.06  E-value=3.5e-09  Score=85.16  Aligned_cols=169  Identities=17%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      .+++|+++ |..||||||.++-||.++.  ..|++|.+|-+|.....-...+....              ..-++.+...
T Consensus         5 ~~~vi~lv-GptGvGKTTTiaKLA~~~~--~~g~kV~lit~Dt~R~gA~eQL~~~a--------------~~l~i~~~~~   67 (207)
T d1okkd2           5 KGRVVLVV-GVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWG--------------KRLSIPVIQG   67 (207)
T ss_dssp             SSSEEEEE-CSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTHHHHHHHHH--------------HHHTCCEECC
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCcEEEEEeccccccchhhHhhcc--------------cccCceEEec
Confidence            35667776 8899999999999999999  88999999999987654333221110              0112222211


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-------CCCcEEEEecCC
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-------LPDIGAIVVTTP  196 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-------~~ad~vliv~~~  196 (294)
                      .            ........+.+.+...+..+ ||+||||+++...  ...+..+..+..       ...+.+++|..+
T Consensus        68 ~------------~~~d~~~~~~~~~~~~~~~~-~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a  134 (207)
T d1okkd2          68 P------------EGTDPAALAYDAVQAMKARG-YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA  134 (207)
T ss_dssp             C------------TTCCHHHHHHHHHHHHHHHT-CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred             c------------CCccHHHHHHHHHHHHHHCC-CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeec
Confidence            1            01111224444443333224 9999999997543  222222222211       133556666644


Q ss_pred             chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        197 QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       197 ~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ... ...+.......+..++.  ++|+++.|..       .     ....+-.+....++|+.
T Consensus       135 ~~~-~~~~~~~~~~~~~~~~~--~lI~TKlDet-------~-----~~G~~l~~~~~~~~Pi~  182 (207)
T d1okkd2         135 VTG-QNGLEQAKKFHEAVGLT--GVIVTKLDGT-------A-----KGGVLIPIVRTLKVPIK  182 (207)
T ss_dssp             TBC-THHHHHHHHHHHHHCCS--EEEEECTTSS-------C-----CCTTHHHHHHHHCCCEE
T ss_pred             ccC-chHHHHHHHhhhccCCc--eEEEeccCCC-------C-----CccHHHHHHHHHCCCEE
Confidence            332 24455555555555555  8999999831       1     12234455556777765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.95  E-value=6.4e-09  Score=83.80  Aligned_cols=168  Identities=15%  Similarity=0.156  Sum_probs=88.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      +.+|++ .|..|+||||.++-||.++.  ..|++|.+|-+|.....-...+...              ...-++.+....
T Consensus        12 p~vi~l-vGptGvGKTTTiAKLA~~~~--~~g~kV~lit~Dt~R~ga~eQL~~~--------------a~~l~v~~~~~~   74 (211)
T d1j8yf2          12 PYVIML-VGVQGTGKATTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQL--------------GQQIGVPVYGEP   74 (211)
T ss_dssp             SEEEEE-ECSCCC----HHHHHHHHHH--HTTCCEEEEECCCSSHHHHHHHHHH--------------HHHHTCCEECCT
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHH--HCCCceEEEEeeccccchhHHHHHh--------------ccccCcceeecc
Confidence            445555 48899999999999999999  8899999999998653221111110              001122222111


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-hH-H--HHHHHHh-hcCCCcEEEEecCCchhhH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-DE-H--LSLVQYL-KGLPDIGAIVVTTPQEVSL  201 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-~~-~--~~~~~~l-~~~~ad~vliv~~~~~~s~  201 (294)
                          .        .......+.+.+...+..+ +|+||||+++... +. .  +..+..+ .....+.+++|..+... .
T Consensus        75 ----~--------~~~~~~~~~~a~~~~~~~~-~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~-~  140 (211)
T d1j8yf2          75 ----G--------EKDVVGIAKRGVEKFLSEK-MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG-Q  140 (211)
T ss_dssp             ----T--------CCCHHHHHHHHHHHHHHTT-CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G
T ss_pred             ----c--------chhhhHHHHHHHHHhhccC-CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccC-c
Confidence                0        1111223444444333234 9999999996431 11 1  1111111 11245667777655442 2


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        202 LDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       202 ~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..........+..++.  ++|++++|..            .....+-.+....++|+.
T Consensus       141 ~~~~~~~~~~~~~~~~--~lI~TKlDet------------~~~G~~l~~~~~~~lPi~  184 (211)
T d1j8yf2         141 KAYDLASKFNQASKIG--TIIITKMDGT------------AKGGGALSAVAATGATIK  184 (211)
T ss_dssp             GHHHHHHHHHHHCTTE--EEEEECTTSC------------SCHHHHHHHHHTTTCCEE
T ss_pred             chHHHHhhhhcccCcc--eEEEecccCC------------CcccHHHHHHHHHCcCEE
Confidence            3444555555555554  8999999831            123344455556777766

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=1.2e-08  Score=82.19  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      .+.+.++.|..||||||.++-||..+.  .+|++|.++-+|.....-...+...              ...-++.+....
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~--~~~~kV~lit~Dt~R~gA~eQL~~~--------------a~~l~i~~~~~~   73 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRAAAIEQLKIW--------------GERVGATVISHS   73 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHHHH--------------HHHHTCEEECCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCceEEEeecccccchhHHHHHH--------------hhhcCccccccC
Confidence            334555558899999999999999999  8899999999998653322222110              001122222211


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhhc-------CCCcEEEEecCCc
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLKG-------LPDIGAIVVTTPQ  197 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~~-------~~ad~vliv~~~~  197 (294)
                      .     .       ......+......... ++||+|||||++....  +.+..+..+..       ...+.+++|....
T Consensus        74 ~-----~-------~d~~~~~~~~~~~~~~-~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~  140 (213)
T d1vmaa2          74 E-----G-------ADPAAVAFDAVAHALA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT  140 (213)
T ss_dssp             T-----T-------CCHHHHHHHHHHHHHH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG
T ss_pred             C-----C-------CcHHHHHHHHHHHHHH-cCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccc
Confidence            0     0       1111122222222211 3399999999975432  22222222211       1135567776553


Q ss_pred             hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347        198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                       .....+.......+..++.  ++|+.+.|..           . ....+-.+....++|+.
T Consensus       141 -~~~~~~~~~~~~~~~~~~~--~lI~TKlDe~-----------~-~~G~~l~~~~~~~~Pi~  187 (213)
T d1vmaa2         141 -TGQNGLVQAKIFKEAVNVT--GIILTKLDGT-----------A-KGGITLAIARELGIPIK  187 (213)
T ss_dssp             -GHHHHHHHHHHHHHHSCCC--EEEEECGGGC-----------S-CTTHHHHHHHHHCCCEE
T ss_pred             -cCcchhhhhhhhccccCCc--eEEEecccCC-----------C-cccHHHHHHHHHCCCEE
Confidence             3456666666666666655  8999999831           1 12234455556777766

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=6e-08  Score=83.39  Aligned_cols=149  Identities=16%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEe
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMS  124 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (294)
                      ...+|+|+ |.+|+||||+...|+.++.  ..|++|.++-.||..+-.. .++|        ....+......++..+.+
T Consensus        53 ~~~~Igit-G~pGaGKSTLi~~l~~~~~--~~g~~vavlavDpss~~~ggailg--------dr~rm~~~~~~~~~~ir~  121 (327)
T d2p67a1          53 NTLRLGVT-GTPGAGKSTFLEAFGMLLI--REGLKVAVIAVDPSSPVTGGSILG--------DKTRMNDLARAEAAFIRP  121 (327)
T ss_dssp             CSEEEEEE-ECTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-----------------------CTTTTCTTEEEEE
T ss_pred             CceEEEee-CCCCCCHHHHHHHHHHHHH--hcCCceeeecCCCceeeecccccc--------chhHHHHhcccccccccc
Confidence            35667766 7788999999999999999  8999999999999753211 1111        111222223334555444


Q ss_pred             cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHH
Q psy11347        125 IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLD  203 (294)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~  203 (294)
                      ....-.         .........+.+..+...+ ||+|||++.+..-.+ ....     ..+|.+++|..|+. ..++.
T Consensus       122 ~~~~g~---------lgg~~~~~~~~~~~~~~~g-~d~iliEtvG~gq~e-~~i~-----~~aD~~l~v~~P~~Gd~iq~  185 (327)
T d2p67a1         122 VPSSGH---------LGGASQRARELMLLCEAAG-YDVVIVETVGVGQSE-TEVA-----RMVDCFISLQIAGGGDDLQG  185 (327)
T ss_dssp             ECC--------------CHHHHHHHHHHHHHHTT-CSEEEEEEECCTTHH-HHHH-----TTCSEEEEEECC------CC
T ss_pred             cccccc---------cccchhhhhHHHHHHHhcC-CCeEEEeeccccccc-hhhh-----hccceEEEEecCCCchhhhh
Confidence            321100         0011113333333333223 999999999654432 2333     57999999998876 44444


Q ss_pred             HHHHHHHHHhcCCCeeEEEecccc
Q psy11347        204 VRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       204 ~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      .+.-+-.+..      .+|+|+.|
T Consensus       186 ~k~gi~e~aD------i~VvNKaD  203 (327)
T d2p67a1         186 IKKGLMEVAD------LIVINKDD  203 (327)
T ss_dssp             CCHHHHHHCS------EEEECCCC
T ss_pred             hchhhhcccc------EEEEEeec
Confidence            4444333322      58899987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.44  E-value=2.4e-07  Score=79.43  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG  126 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (294)
                      ..+|+++ |.+|+||||+...|+.++.  ..|++|.++-.||..+-.       ...+......+......++..+-+..
T Consensus        51 ~~~igit-G~pGaGKSTli~~l~~~~~--~~g~~vaViavDpss~~~-------gg~llgdr~rm~~~~~~~~~~ir~~~  120 (323)
T d2qm8a1          51 AIRVGIT-GVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRT-------GGSILGDKTRMARLAIDRNAFIRPSP  120 (323)
T ss_dssp             SEEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSS-------CCCSSCCGGGSTTGGGCTTEEEECCC
T ss_pred             ceEEeee-CCCCCCHHHHHHHHHHHHh--hcCCceeeeecccccHHH-------HhccccchhhHHHHhcccceeecccc
Confidence            4555655 7889999999999999999  899999999999865311       01111122223333334555554432


Q ss_pred             cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHH
Q psy11347        127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVR  205 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~  205 (294)
                      ..    ..     .........+.+..+...+ ||+|||.+.+..-++. ...     ..+|.++++..+... .++..+
T Consensus       121 ~~----~~-----~gg~~~~~~~~i~~~~~~g-~d~iiiETVG~gq~e~-~~~-----~~~D~~v~v~~p~~GD~iQ~~k  184 (323)
T d2qm8a1         121 SS----GT-----LGGVAAKTRETMLLCEAAG-FDVILVETVGVGQSET-AVA-----DLTDFFLVLMLPGAGDELQGIK  184 (323)
T ss_dssp             CC----SS-----HHHHHHHHHHHHHHHHHTT-CCEEEEEECSSSSCHH-HHH-----TTSSEEEEEECSCC------CC
T ss_pred             cc----cc-----ccchhHHHHHHHHhhccCC-CCeEEEeehhhhhhhh-hhh-----cccceEEEEeeccchhhhhhhh
Confidence            11    00     0111223444444333234 9999999996543332 233     579999999888763 333222


Q ss_pred             HHHHHHHhcCCCeeEEEecccc
Q psy11347        206 KEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       206 ~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      .-+-.+.      -.+|+||+|
T Consensus       185 ~gilE~a------Di~vvNKaD  200 (323)
T d2qm8a1         185 KGIFELA------DMIAVNKAD  200 (323)
T ss_dssp             TTHHHHC------SEEEEECCS
T ss_pred             hhHhhhh------heeeEeccc
Confidence            2222221      268999987

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.23  E-value=1.9e-06  Score=66.16  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |++|+|+ |..|+||||+...|+..|+  .+|++|.++..|...
T Consensus         1 Mkii~I~-G~~gSGKTTli~~l~~~L~--~~g~~v~vik~d~~~   41 (165)
T d1xjca_           1 MNVWQVV-GYKHSGKTTLMEKWVAAAV--REGWRVGTVKHHGHG   41 (165)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC--
T ss_pred             CcEEEEE-eCCCCCHHHHHHHHHHHHH--hCCCeEEEEEeccCc
Confidence            6777777 5669999999999999999  899999999988754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=1.3e-06  Score=72.93  Aligned_cols=90  Identities=16%  Similarity=0.011  Sum_probs=69.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+-|+|+|+... ..-.+...+  ..+|..|+|+++...--..+.++++..++.+++. .+++||.|.      .    
T Consensus        71 ~~~n~iDtPG~~d-F~~e~~~~l--~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~-i~fINKmDr------~----  136 (276)
T d2bv3a2          71 HRINIIDAPGHVD-FTIEVERSM--RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDK------T----  136 (276)
T ss_dssp             EEEEEECCCSSSS-CSTTHHHHH--HHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCE-EEEEECTTS------T----
T ss_pred             eEEEEecCCchhh-hHHHHHHHH--HhhhheEEeccccCCcchhHHHHHHHHHHcCCCE-EEEEecccc------c----
Confidence            8899999996442 122233334  5789999999999999999999999999999995 488999883      2    


Q ss_pred             CCCCchhHHHHHhhcCCceee-ccC
Q psy11347        240 FPKDSGGAEKMCAELSVPFLG-SVP  263 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~l~-~Ip  263 (294)
                      ..++...++++.+.++..++. .+|
T Consensus       137 ~ad~~~~l~ei~~~l~~~~vp~~~P  161 (276)
T d2bv3a2         137 GADLWLVIRTMQERLGARPVVMQLP  161 (276)
T ss_dssp             TCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred             ccccchhHHHHHHHhCCCeEEEEec
Confidence            344567889999999977764 344

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.98  E-value=3.4e-06  Score=67.32  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=54.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+.. +..-.+...+  ..+|.+|+|++....-...+.+.+..+...+++.+-+++|++|.
T Consensus        67 ~~i~iiDtPGh~-df~~~~~~~~--~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          67 RHYSHVDCPGHA-DYIKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM  132 (204)
T ss_dssp             CEEEEEECCCSG-GGHHHHHHHH--TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             eEEEEEeCCCch-hhHHHHHHHH--HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEeccc
Confidence            889999999644 3444555666  78999999999988877888999999999999877778999983

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.89  E-value=4e-05  Score=63.34  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI  239 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i  239 (294)
                      +.+-+||+|+..+ ..-.+..++  ..+|.+|+|++....-...+.+.++.+.+.+++. .+++|+.+.           
T Consensus        67 ~~~n~iDtPGh~d-F~~e~~~al--~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~-~i~iNk~D~-----------  131 (267)
T d2dy1a2          67 HRVFLLDAPGYGD-FVGEIRGAL--EAADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDK-----------  131 (267)
T ss_dssp             EEEEEEECCCSGG-GHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGG-----------
T ss_pred             cceeEEccCchhh-hhhhhhhhh--cccCceEEEeeccCCccchhHHHHHhhhhccccc-ccccccccc-----------
Confidence            7899999996543 444555555  6799999999999888889999999999999995 468899872           


Q ss_pred             CCCCchhHHHHHhhcC
Q psy11347        240 FPKDSGGAEKMCAELS  255 (294)
Q Consensus       240 ~~~~~~~~~~~~~~~g  255 (294)
                      ...+.+.+.++.+.++
T Consensus       132 ~~~~~~~l~~~~~~lg  147 (267)
T d2dy1a2         132 GGDYYALLEDLRSTLG  147 (267)
T ss_dssp             CCCHHHHHHHHHHHHC
T ss_pred             cccchhhhhhHHHHhc
Confidence            2234566778888887

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=8.8e-06  Score=65.88  Aligned_cols=70  Identities=23%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM  123 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~  123 (294)
                      .+..+-|.+|+||||+...++..+.  ....+|.+-+-|.....-   ......++++....+......+|+.+.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~~tv~eni~~~   96 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP---AERGVGMVFQSYALYPHLSVAENMSFG   96 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCG---GGTCEEEECSSCCC-------------
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCch---hhceeeeeccccccccchhHHHHHHHH
Confidence            3444558899999999999999998  888899988877653221   123344566666555566666666653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.2e-05  Score=61.20  Aligned_cols=42  Identities=17%  Similarity=0.223  Sum_probs=35.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      |-++|+|+ |..|+||||++..|+..|.  .+|++|.+++.|...
T Consensus         1 m~Pvi~it-G~~GSGKTTL~~~L~~~l~--~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           1 MIPLLAFA-AWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CCCEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-
T ss_pred             CCCEEEEE-cCCCCCHHHHHHHHHHHHH--HCCCeEEEecccccc
Confidence            34566666 7779999999999999999  899999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=2.3e-05  Score=61.99  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++.+.++.|..|+||||+|..||..+.  ..+.++.+++.|.
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~--~~~~~~~~~~~D~   40 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLN--FIGVPTREFNVGQ   40 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCCCeEEcccc
Confidence            356788889999999999999999999  8899999999985

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.64  E-value=3.7e-05  Score=62.13  Aligned_cols=39  Identities=31%  Similarity=0.508  Sum_probs=33.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .|.++.|--|+||||+..+|..++.   .++++.+|..|+..
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~---~~~~~~ivn~d~~~   39 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCSSC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh---hCCeEEEEecCccc
Confidence            3667779999999999999998877   57789999999864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.63  E-value=9.4e-05  Score=58.23  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+.. +....+...+  ..+|.+|+|++....-...+.+.+..+...+.+.+-+++|+.+.
T Consensus        66 ~~~~~iDtPGh~-~f~~~~~~~~--~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~  131 (196)
T d1d2ea3          66 RHYAHTDCPGHA-DYVKNMITGT--APLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA  131 (196)
T ss_dssp             CEEEEEECSSHH-HHHHHHHHTS--SCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             eeEEeecCcchH-HHHHHHHHHH--hhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccc
Confidence            789999999533 3334444444  68999999999988777778889999999998877788999984

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.53  E-value=8.8e-06  Score=65.82  Aligned_cols=67  Identities=15%  Similarity=0.063  Sum_probs=43.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh---ccccccccccccCCCCccee
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM---MGLLNEQVHQSASGWSPVFL  116 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~---lg~~~~~~~~~~~~~~~~~~  116 (294)
                      ..+..+-|.+|+||||+...++..+.  ....+|.+-+.|....+-...   ......++++....+.....
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv  100 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA  100 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccH
Confidence            33455558999999999999999998  778889887777765443222   22233455555444444333

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=4.5e-06  Score=67.99  Aligned_cols=71  Identities=17%  Similarity=0.081  Sum_probs=45.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh--ccccccccccccCCCCcceeccCeE
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM--MGLLNEQVHQSASGWSPVFLEENLS  121 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~--lg~~~~~~~~~~~~~~~~~~~~~l~  121 (294)
                      .+..+-|++|+||||+...++..+.  ....+|.+-+-|....+-...  +.....++++....+......+|+.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~  104 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA  104 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHH
Confidence            3445558999999999999999998  788889887777654332221  2223445555555555544445443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.47  E-value=7.8e-06  Score=66.54  Aligned_cols=70  Identities=17%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh--hhhccccccccccccCCCCcceeccCe
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM--PRMMGLLNEQVHQSASGWSPVFLEENL  120 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l--~~~lg~~~~~~~~~~~~~~~~~~~~~l  120 (294)
                      .+..+-|.+|+||||+...++..+.  ....+|.+-+-|....+-  ......+..++++....++.....+|+
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni  103 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI  103 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHh
Confidence            3444458999999999999999998  777788886666543221  111223344555555444444444444

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.45  E-value=2.1e-05  Score=63.81  Aligned_cols=40  Identities=28%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .+..+-|.+|+||||+...++..+.  ....+|.+-+-|...
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~   72 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTY   72 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceeccc
Confidence            3445558899999999999999999  778889887777643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00021  Score=60.90  Aligned_cols=65  Identities=22%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |-+-|||+|+..+ ....+..++  ..+|.+|+|++....-...+.+++++..+.+++. -+++|++|.
T Consensus        96 ~~inliDtPGh~d-F~~ev~~al--~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~-i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVD-FSSEVTAAL--RVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCS-SCHHHHHHH--HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHH
T ss_pred             eEEEEEcCCCcHH-HHHHHHHHH--hhcCceEEEEecccCcchhHHHHHHHHHHcCCCe-EEEEECccc
Confidence            7788999997543 223344444  5799999999999999999999999999999885 578899983

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.35  E-value=6.4e-06  Score=67.07  Aligned_cols=37  Identities=22%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +..+-|.+|+||||+...++..+.  ....+|.+-+.|.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i   67 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV   67 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence            444448899999999999999998  7788888766554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.33  E-value=1.9e-05  Score=63.64  Aligned_cols=68  Identities=24%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCe
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL  120 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l  120 (294)
                      ..+..+-|.+|+||||+...|+..+.  ....+|.+-+.|....+..   .....++++....+......+|+
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~---~r~ig~v~Q~~~l~~~~tV~enl   93 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPE---KHDIAFVYQNYSLFPHMNVKKNL   93 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHH---HHTCEEECTTCCCCTTSCHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchh---HhcceeeccccccCccccHHHHH
Confidence            33444558999999999999999999  8888998877776542211   12333445544444444433433

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.33  E-value=2.5e-05  Score=63.33  Aligned_cols=66  Identities=24%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCe
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL  120 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l  120 (294)
                      +..+-|.+|+||||+...++..+.  ....+|.+-+.|...-+..   .....++++....++.....+|+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~---~r~ig~v~Q~~~l~~~ltV~enl   91 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE---RRGIGFVPQDYALFPHLSVYRNI   91 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT---TSCCBCCCSSCCCCTTSCHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHH---HcCceeeccchhhcccchhhHhh
Confidence            444559999999999999999999  8888999887776542211   22334455554444444444444

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.28  E-value=0.0007  Score=55.64  Aligned_cols=54  Identities=13%  Similarity=0.168  Sum_probs=44.6

Q ss_pred             cChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+.|..-|+ .  ....|+-+.|..|+||||++..++....  +.|.+|++||+.-.
T Consensus        40 TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aq--k~g~~v~yiDtE~~   96 (268)
T d1xp8a1          40 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHA   96 (268)
T ss_dssp             CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             CCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHH--hCCCEEEEEECCcc
Confidence            45677787776 3  2455778889999999999999999999  88999999999753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.25  E-value=0.00019  Score=57.86  Aligned_cols=54  Identities=11%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++.|.+.+..  ....+.++.|..|+|||+++..+|..+.  ..+.+|++++++..
T Consensus        10 TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~e~~   65 (242)
T d1tf7a2          10 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES   65 (242)
T ss_dssp             CSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC
T ss_pred             CCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHH--HhccccceeeccCC
Confidence            456677777773  4677888889999999999999999999  89999999999754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.22  E-value=0.00013  Score=58.01  Aligned_cols=55  Identities=25%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.+..|+.+......+.++.|-.|+||||+|..|+..|. ...+.++.++|.|.-.
T Consensus        11 ~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~-~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          11 LTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             CCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHHHT
T ss_pred             cCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCceEEEEcchHHH
Confidence            345567777776666777779999999999999998886 1467899999998643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.18  E-value=4.7e-05  Score=61.96  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=35.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP   94 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~   94 (294)
                      +.+++++ |.+|+||||+...++..+.  ....+|.+-+-|.......
T Consensus        32 Gei~~li-GpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~   76 (240)
T d1ji0a_          32 GQIVTLI-GANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHH
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHH
Confidence            4445555 8899999999999999999  7888999988877654433

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00014  Score=55.62  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .++.|..|+||||++..++..|.  ..|.+|.++.+++..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~l~--~~~~~v~~~~~~~~~   41 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEVLK--SSGVPVDGFYTEEVR   41 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHH--HTTCCCEEEECCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecccc
Confidence            45669999999999999999999  889999999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.15  E-value=3.2e-05  Score=63.56  Aligned_cols=47  Identities=26%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM   96 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~   96 (294)
                      +.+++++ |.+|+||||+...++..+.  ....+|.+-+.|....+....
T Consensus        30 Gei~~li-G~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~   76 (254)
T d1g6ha_          30 GDVTLII-GPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAEL   76 (254)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHH
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHH
Confidence            4455555 7899999999999999999  888899998888765444433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.09  E-value=0.00026  Score=54.78  Aligned_cols=45  Identities=27%  Similarity=0.416  Sum_probs=38.3

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +....+.|..++|..|+||||+|..|+..+.  ..+..+..++.|..
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~--~~~~~~~~~~~~~~   61 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDH   61 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGG
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc--cccccceecccccc
Confidence            4445677888889999999999999999999  88999998887654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00099  Score=54.58  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             cChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+.|...+. .  ....|.-+.|..|+||||++..++....  +.|.+|+++|+.-.
T Consensus        37 TG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q--~~g~~~vyidtE~~   93 (263)
T d1u94a1          37 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHA   93 (263)
T ss_dssp             CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred             cCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEEccccc
Confidence            44667777775 3  2456788889999999999999999999  88999999999754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.05  E-value=0.00021  Score=57.42  Aligned_cols=66  Identities=17%  Similarity=0.050  Sum_probs=48.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV  229 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~  229 (294)
                      +.+.++|+|+.... ...+...+  ..+|.+|+|++....--......+..+...+.+ +-+++|++|..
T Consensus        70 ~~~~~iDtPGh~~f-~~~~~~~~--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iivlNK~D~~  135 (227)
T d1g7sa4          70 PGLFFIDTPGHEAF-TTLRKRGG--ALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI  135 (227)
T ss_dssp             CEEEEECCCTTSCC-TTSBCSSS--BSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred             cccccccccceecc-cccchhcc--cccceEEEEEecccCcccchhHHHHHhhcCCCe-EEEEEECccCC
Confidence            78999999964321 11111222  579999999998776667788999999999998 45889999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.02  E-value=0.00021  Score=58.02  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ...+..+.|++|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~   68 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDN   68 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEecc
Confidence            334444458999999999999999998  778899987766543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00098  Score=54.74  Aligned_cols=54  Identities=15%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             cChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+.|...++ .  ....|.-+.|..|+||||++..++....  ..|.+|++||+.-.
T Consensus        43 TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q--~~g~~~vyIDtE~~   99 (269)
T d1mo6a1          43 TGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHA   99 (269)
T ss_dssp             CSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHH--HTTCEEEEEESSCC
T ss_pred             cCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHh--cCCCEEEEEECCcc
Confidence            44667777775 2  3577888889999999999999999988  88999999999753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00041  Score=56.88  Aligned_cols=40  Identities=30%  Similarity=0.218  Sum_probs=33.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcC----------CCCcEEEEecCCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSN----------ESVDVGVLDLDIC   89 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~----------~g~~VlliD~D~~   89 (294)
                      ..++++.+.+|+||||++..||..++  .          .+.+|++++++..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH--cCCCcccccccCCCceEEEeccch
Confidence            34788899999999999999999987  3          3348999988764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.87  E-value=0.00055  Score=54.42  Aligned_cols=55  Identities=15%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..++.|...+..  ....+.++.|..|+|||+++.++|...+ ...+.+|++++++..
T Consensus        10 TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~-~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          10 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IEFDEPGVFVTFEET   66 (242)
T ss_dssp             CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred             CCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCcccccccCC
Confidence            456667777653  3567788889999999999999887644 145678999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.80  E-value=0.00077  Score=51.59  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      ||+|+| .|-.|+||||++..||..|.  ..|.++..+..
T Consensus         1 mkiivi-~G~~GsGKTT~~~~La~~L~--~~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIV-TGIPGVGKSTVLAKVKEILD--NQGINNKIINY   37 (194)
T ss_dssp             CEEEEE-EECTTSCHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEC
Confidence            344444 46679999999999999999  89999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.76  E-value=0.0012  Score=51.80  Aligned_cols=66  Identities=17%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+.++|+|+.. +....+...+  ..+|.+|++++.... ....+...+..+...+++.+-+++|+++.
T Consensus        86 r~~~iiD~PGH~-df~~~~~~~~--~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          86 RRISFIDAPGHE-VLMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEEECSCHH-HHHHHHHHTS--SCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             EEEEEeccchHH-HHHhhhhcce--eccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCC
Confidence            458999999644 2333444444  689999999987764 35567778888888888777788999984

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.76  E-value=0.0021  Score=48.64  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ++.|..|+||||++..++..+.  .....+...+.+
T Consensus         4 ~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~   37 (178)
T d1ye8a1           4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVR   37 (178)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC
T ss_pred             EEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcc
Confidence            4558899999999999999999  555555554433

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.76  E-value=3.4e-05  Score=63.46  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      +.+++++ |.+|+||||+...|+..+.  ....+|.+-+-|.
T Consensus        28 GEi~~ii-G~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i   66 (258)
T d1b0ua_          28 GDVISII-GSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI   66 (258)
T ss_dssp             TCEEEEE-CCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEe
Confidence            4445555 7899999999999999888  7778888755554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.019  Score=45.27  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      |.+++|==|+||||+...|..  .  ..++|+.+|-.|..
T Consensus         5 v~iitGFLGaGKTTll~~lL~--~--~~~~riaVI~Ne~g   40 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN--E--QHGYKIAVIENEFG   40 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH--S--CCCCCEEEECSSCC
T ss_pred             EEEEeeCCCCCHHHHHHHHHh--c--CCCCcEEEEEeccc
Confidence            567777789999999877755  2  46889999977753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.71  E-value=0.00049  Score=51.80  Aligned_cols=27  Identities=41%  Similarity=0.575  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |+.+.++.|..|+||||+|..||..+.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            445666779999999999999998876

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=96.70  E-value=0.0013  Score=52.41  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.|+|+|+... ....++..+  ..+|.+++|++....-...+...+..+...+++.+-+++|+.|.
T Consensus        89 ~~~~iiD~PGH~d-fv~~~~~g~--~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          89 RKFIIADTPGHEQ-YTRNMATGA--STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             EEEEEEECCCSGG-GHHHHHHHH--TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred             eEEEEEeccchhh-hhhhhcccc--ccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccc
Confidence            7899999996543 334444455  78999999999988777788899999999999988899999984

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00059  Score=52.63  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+.++.|-.|+||||+|..||..|.  ..+.....++.|.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~--~~~~~~~~~~~d~   57 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDN   57 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHH--HTTCCEEEECHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCccchhHHh
Confidence            34556779999999999999999999  7788777776653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.68  E-value=0.00044  Score=52.33  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |.+.|.++.|..|+||||+|..|+..|.  .   ++..+|.|.
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~--~---~~~~~~~d~   38 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLP--E---PWLAFGVDS   38 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSS--S---CEEEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC--C---CeEEeecch
Confidence            4566777889999999999999999876  3   455556553

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0032  Score=47.47  Aligned_cols=42  Identities=19%  Similarity=0.070  Sum_probs=30.0

Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347        185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT  227 (294)
Q Consensus       185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~  227 (294)
                      ..+|.++++.............+++.++..+.+. .+|+|++|
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pv-iiv~NK~D  120 (171)
T d1mkya1          79 READLVLFVVDGKRGITKEDESLADFLRKSTVDT-ILVANKAE  120 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCE-EEEEESCC
T ss_pred             ccCcEEEEeecccccccccccccccccccccccc-cccchhhh
Confidence            5688777777766555555566677777778774 58889987

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0012  Score=55.37  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      .+.|..++|..|+||||+|..|+..|++...+.+|.+|.+|.-
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4567777799999999999999999983234789999999853

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.64  E-value=0.00077  Score=51.00  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~   88 (294)
                      ...+.++.|-.|+||||++..||..|.  ..+ ..+..+|.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~--~~~~~~~~~~~~~~   45 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLN--QQGGRSVSLLLGDT   45 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH--HHCSSCEEEEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCCchhhhhhHH
Confidence            345666669999999999999999998  434 3555666653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.60  E-value=0.0013  Score=53.91  Aligned_cols=55  Identities=22%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             cChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ...+.|...+... ..-+.++.+..|+||||++.++|..++ ...|.+|+++.++..
T Consensus        20 TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a-~~~g~~v~~~s~E~~   75 (277)
T d1cr2a_          20 SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEES   75 (277)
T ss_dssp             CSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSC
T ss_pred             CCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhh-hhcccceeEeeeccc
Confidence            4456666665543 445888999999999999999998765 257999999998754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.55  E-value=0.0013  Score=49.63  Aligned_cols=37  Identities=35%  Similarity=0.420  Sum_probs=28.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |+..+.++.|..|+||||++..|+.     ..|.+++.+|.|
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~-----~lg~~~~~~~~d   38 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALAN-----LPGVPKVHFHSD   38 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHT-----CSSSCEEEECTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH-----HhCCCEEEecHH
Confidence            5667788889999999999877754     346677777765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=9.3e-05  Score=60.02  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +.+++++ |.+|+||||+...|+..+.  ....+|.+.+-|...
T Consensus        28 Gei~glv-G~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~   68 (238)
T d1vpla_          28 GEIFGLI-GPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVE   68 (238)
T ss_dssp             TCEEEEE-CCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTT
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCCEEEECcEeccc
Confidence            4455555 7799999999999999999  888899997777643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.54  E-value=0.00083  Score=51.12  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      |.++.|-.|+||||++..|+..|.  ..+.++.++..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~--~~~~~~~~~~~   37 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSF   37 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEec
Confidence            455568888999999999999999  88998888754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.49  E-value=0.00041  Score=56.63  Aligned_cols=43  Identities=23%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      +..++++ |++|+||||++..|+..+.  ....+|.+-+.|...-+
T Consensus        41 Ge~iaiv-G~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~   83 (253)
T d3b60a1          41 GKTVALV-GRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYT   83 (253)
T ss_dssp             TCEEEEE-ECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBC
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhcccC--CCccEEEECCcccchhh
Confidence            4556665 7999999999999999998  77788888777665433

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.47  E-value=0.029  Score=48.40  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeE
Q psy11347         42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLS  121 (294)
Q Consensus        42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~  121 (294)
                      ++.....-+.+++|..|+||||+...+-..+.  ..+++++-++ ||-.-.                        .++..
T Consensus       152 ~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~--~~~~~i~tiE-dPiE~~------------------------~~~~~  204 (401)
T d1p9ra_         152 RLIKRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVE-DPIEFD------------------------IDGIG  204 (401)
T ss_dssp             HHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEE-SSCCSC------------------------CSSSE
T ss_pred             HHHhhhhceEEEEcCCCCCccHHHHHHhhhhc--CCCceEEEec-cCcccc------------------------cCCCC
Confidence            44445677788889999999999999999988  6678888776 443210                        01111


Q ss_pred             EEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH
Q psy11347        122 VMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL  201 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~  201 (294)
                      ..+...     .     ........++.+++    .+ +|+|+|..-.....  ...+...  +...+.|+.+-......
T Consensus       205 q~~v~~-----~-----~~~~~~~~l~~~lR----~d-PDvi~igEiRd~~t--a~~a~~a--a~tGhlV~tTlHa~~a~  265 (401)
T d1p9ra_         205 QTQVNP-----R-----VDMTFARGLRAILR----QD-PDVVMVGEIRDLET--AQIAVQA--SLTGHLVMSTLHTNTAV  265 (401)
T ss_dssp             EEECBG-----G-----GTBCHHHHHHHHGG----GC-CSEEEESCCCSHHH--HHHHHHH--HHTTCEEEEEECCSSSH
T ss_pred             eeeecC-----C-----cCCCHHHHHHHHHh----hc-CCEEEecCcCChHH--HHHHHHH--HhcCCeEEEEeccCchH
Confidence            111110     0     01112223444443    35 99999998854432  2222122  34667777777777777


Q ss_pred             HHHHHHHHHHHhcC--CCeeEEEecc--ccccCCCCCCCC
Q psy11347        202 LDVRKEIDFCRKVN--IPIIGVVENM--ATFVCPKCTKPS  237 (294)
Q Consensus       202 ~~~~~~l~~l~~~~--~~~~~vvvN~--~~~~~~~~~~~~  237 (294)
                      ....++++.-....  ...+..|+++  ++..|+-|+...
T Consensus       266 ~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~  305 (401)
T d1p9ra_         266 GAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPY  305 (401)
T ss_dssp             HHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEE
T ss_pred             hhhhhhhhcccchhhHHHHHHHHHhccchhhhCCCcCcCC
Confidence            77777665431110  1123334444  455577776543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0029  Score=50.94  Aligned_cols=66  Identities=12%  Similarity=0.034  Sum_probs=51.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      |.+.|+|+|+... ..-.+...+  ..+|..|+|+++....+.       .+...+..++..+++.+-+++|+.|.
T Consensus        84 ~~i~iiDtPGH~d-f~~~~~~g~--~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~  156 (239)
T d1f60a3          84 YQVTVIDAPGHRD-FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS  156 (239)
T ss_dssp             EEEEEEECCCCTT-HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred             EEEEEEECCCcHH-HHHHHHHHH--HHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCC
Confidence            8999999996654 334444444  789999999988776543       47777888888999988889999984

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0013  Score=53.52  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +..++++ |.+|+||||+...|+..+.  ....+|.+-+.|...
T Consensus        40 Ge~vaiv-G~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~~   80 (251)
T d1jj7a_          40 GEVTALV-GPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ   80 (251)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHhcccC--CCcCEEEECCEecch
Confidence            4455555 8999999999999999998  777888876665543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.019  Score=42.94  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=55.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.++|+++.-.   ...+....-..++.++++.+. +..++......+..+.+..  ...+.+|.|+.+..     ..
T Consensus        54 ~~l~i~Dt~G~e~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~-----~~  125 (171)
T d2ew1a1          54 VKLQIWDTAGQER---FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ER  125 (171)
T ss_dssp             EEEEEEEECCSGG---GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEEEECCCchh---hHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccc-----cc
Confidence            7889999996322   112222222578888888864 4588888888888775442  23466778998842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.   .+.++++.+..+.+++
T Consensus       126 ~~v~---~~~~~~~~~~~~~~~~  145 (171)
T d2ew1a1         126 REVS---QQRAEEFSEAQDMYYL  145 (171)
T ss_dssp             CSSC---HHHHHHHHHHHTCCEE
T ss_pred             cchh---hhHHHHHHHhCCCEEE
Confidence            2222   3456777777777665

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.32  E-value=0.00098  Score=51.87  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=46.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+... ....+...+  ..+|.++++++..... ...+...+..+...+.+.+-+++|+.+.
T Consensus        78 ~~~~~iDtPGh~~-f~~~~~~~~--~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~  144 (195)
T d1kk1a3          78 RRVSFIDAPGHEA-LMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL  144 (195)
T ss_dssp             EEEEEEECSSHHH-HHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred             eeEeeeccchhhh-hhHHhhccc--ccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccc
Confidence            5689999996432 222333333  5789999888877653 4557777888888888877788999873

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.023  Score=42.37  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=52.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+.-..  .... ...-..+|.+|++.+.+. .++.....+...+....  ...+.+|.|+.+..     ..
T Consensus        54 ~~l~~wDt~G~e~~--~~~~-~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-----~~  125 (169)
T d3raba_          54 IKLQIWDTAGQERY--RTIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DE  125 (169)
T ss_dssp             EEEEEEEECCSGGG--HHHH-HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG-----GG
T ss_pred             EEEEEEECCCchhh--HHHH-HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc-----cc
Confidence            67889999964322  1122 222257898888886554 57777777676665443  23456777998742     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.   .+..+++.+..+++++
T Consensus       126 ~~v~---~~~~~~~~~~~~~~~~  145 (169)
T d3raba_         126 RVVS---SERGRQLADHLGFEFF  145 (169)
T ss_dssp             CCSC---HHHHHHHHHHHTCEEE
T ss_pred             cccc---hhhhHHHHHHcCCEEE
Confidence            1222   3455677777777654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.20  E-value=0.0016  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=18.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHH
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLAR   70 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~   70 (294)
                      |+.+.++.|..|+||||+|..|+.
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            455667789999999999887643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.014  Score=44.12  Aligned_cols=67  Identities=13%  Similarity=-0.005  Sum_probs=39.4

Q ss_pred             ccEEEEcCCCCCCh-----HH--HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCC-CeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD-----EH--LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNI-PIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~-----~~--~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~-~~~~vvvN~~~~  228 (294)
                      ..++++|+|+....     ..  ..+...+  ..+|.++++++.....-..-..+++.+++... ..+.+|+|++|.
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~--~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl  127 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA  127 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred             eeeeecccccccccccccchhccccccccc--ccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccc
Confidence            67889999954221     11  1112223  57999999987765332333455566655432 246688999984

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.18  E-value=0.0014  Score=49.68  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=26.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |.+.|.++ |-.|+||||++..||..|.       .-++|.|
T Consensus         1 M~~~Iil~-G~~GsGKSTia~~LA~~Lg-------~~~id~D   34 (170)
T d1e6ca_           1 MTEPIFMV-GARGCGMTTVGRELARALG-------YEFVDTD   34 (170)
T ss_dssp             CCCCEEEE-SCTTSSHHHHHHHHHHHHT-------CEEEEHH
T ss_pred             CCCCEEEE-CCCCCCHHHHHHHHHHHhC-------CCEEehh
Confidence            44566665 7799999999999999888       2367776

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.0017  Score=49.10  Aligned_cols=28  Identities=36%  Similarity=0.445  Sum_probs=22.9

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      -++|.|+|. |..|+||||+|..||..+.
T Consensus         5 ~~~K~I~i~-G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           5 FFAKTVAIL-GGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             GTCEEEEEE-CCTTSHHHHHHHHHHHHTT
T ss_pred             ccceEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            357778776 5569999999999999776

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.043  Score=41.21  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=36.0

Q ss_pred             ccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHh-----cCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK-----VNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~-----~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+-...      .....+..+  ..++.++.+.+...............+..     .+.+ +.+|+|++|.
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~  125 (180)
T d1udxa2          49 ERFTLADIPGIIEGASEGKGLGLEFLRHI--ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDL  125 (180)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHH--TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred             CeEEEcCCCeeecCchHHHHHHHHHHHHH--Hhhhhhhhhcccccccccchhhhhhhhhccccccchhh-hhhhhhhhhh
Confidence            67888999863211      012233333  57787777776554444444443333322     1233 5678899883

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.07  E-value=0.0021  Score=52.32  Aligned_cols=43  Identities=28%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      +..++++ |+.|+||||+...|+..+.  ....+|.+-+.|...-+
T Consensus        44 Ge~vaiv-G~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~   86 (255)
T d2hyda1          44 GETVAFV-GMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFL   86 (255)
T ss_dssp             TCEEEEE-CSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSC
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHhcCC--ccccccccCCEEcccCC
Confidence            4555555 8899999999999999988  77788888776665433

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0015  Score=48.34  Aligned_cols=24  Identities=38%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .|.++ |-.|+||||++..||..|.
T Consensus         4 ~I~l~-G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLV-GPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEE-CCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            45555 9999999999999999887

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.04  E-value=0.0015  Score=53.93  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ..+|+| +|.+|+||||++..|+..|.  ..+.+++++..|-.
T Consensus         4 ~pIIgI-aG~SGSGKTTva~~l~~i~~--~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           4 HPIISV-TGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDAF   43 (288)
T ss_dssp             SCEEEE-ESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGGG
T ss_pred             CCEEEE-ECCCCCcHHHHHHHHHHHHh--hcCCCeEEEeCCCC
Confidence            345555 58889999999999999999  78999999999853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0027  Score=49.83  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~   88 (294)
                      .|..++|..|+||||+|..|+..|.  ..     +.+|.++..|-
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~--~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLG--QNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT--GGGSCGGGCSEEEEEGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc--hhccccCCCceEEEeccc
Confidence            4555678899999999999999987  43     45788888873

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.97  E-value=0.006  Score=46.44  Aligned_cols=65  Identities=22%  Similarity=0.129  Sum_probs=45.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|... .....+...+  ..+|.++++++............+..+...+++ ..+++|++|.
T Consensus        59 ~~~~~~d~~g~~-~~~~~~~~~l--~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p-~iiv~NKiD~  123 (179)
T d1wb1a4          59 YRITLVDAPGHA-DLIRAVVSAA--DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDN  123 (179)
T ss_dssp             EEEEECCCSSHH-HHHHHHHHHT--TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTS
T ss_pred             cccccccccccc-ccccchhhhh--hhccccccccccccccchhhhhhhhhhhhcCCc-ceeccccccc
Confidence            778888888533 2222333344  578988888877765555667778888888888 4588999983

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.066  Score=39.53  Aligned_cols=89  Identities=16%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.+.|+++.-....+ ....+  ..+|.++++.+. +..++..+..++..+.+..  ...+.++.|+.+..     ..
T Consensus        53 ~~l~i~D~~g~~~~~~~-~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~  124 (166)
T d1z0fa1          53 IKLQIWDTAGQERFRAV-TRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQ  124 (166)
T ss_dssp             EEEEEEECTTGGGTCHH-HHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred             EEEEEeccCCchhHHHH-HHHHh--cCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch-----hh
Confidence            67889999953221111 11222  478988888765 4577777777777776543  23466777998732     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..   ...+..+++.+..+.++.
T Consensus       125 ~~---~~~~~~~~~~~~~~~~~~  144 (166)
T d1z0fa1         125 RD---VTYEEAKQFAEENGLLFL  144 (166)
T ss_dssp             CC---SCHHHHHHHHHHTTCEEE
T ss_pred             cc---cHHHHHHHHHHHcCCEEE
Confidence            11   123456777777776654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.83  E-value=0.00087  Score=52.63  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +..+-|.+|+||||+...++..+.  ....+|.+-+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~   64 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP   64 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred             EEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEe
Confidence            444458999999999999999999  777788774433

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0035  Score=46.95  Aligned_cols=27  Identities=37%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...|.++.|..|+||||++..||..|.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            455666779999999999999999887

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.028  Score=48.43  Aligned_cols=66  Identities=9%  Similarity=-0.101  Sum_probs=36.8

Q ss_pred             ccEEEEcCCCCCC--hHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTS--DEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~--~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..++|+|+|+-..  ...-..+.......+|.++++++.....  .-..+++.+.+.+.+ +.+|+|+++.
T Consensus       107 ~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~--~d~~l~~~l~~~~k~-~~~V~nK~D~  174 (400)
T d1tq4a_         107 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK--NDIDIAKAISMMKKE-FYFVRTKVDS  174 (400)
T ss_dssp             TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCH--HHHHHHHHHHHTTCE-EEEEECCHHH
T ss_pred             CeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCH--HHHHHHHHHHHcCCC-EEEEEeCccc
Confidence            4678888884211  0111122222224678777776654432  223566777777665 5688899873

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.58  E-value=0.0062  Score=47.26  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      +.++.|--|+||||++..|+..|.  ..|.+|.++..-
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~--~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR--AAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEecC
Confidence            345568889999999999999999  889999988653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.57  E-value=0.0036  Score=46.99  Aligned_cols=31  Identities=42%  Similarity=0.584  Sum_probs=24.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .|+++ |-.|+||||++..||..|.  -.     ++|+|
T Consensus         3 ~Ivli-G~~G~GKSTig~~La~~l~--~~-----fiD~D   33 (165)
T d2iyva1           3 KAVLV-GLPGSGKSTIGRRLAKALG--VG-----LLDTD   33 (165)
T ss_dssp             SEEEE-CSTTSSHHHHHHHHHHHHT--CC-----EEEHH
T ss_pred             cEEEE-CCCCCCHHHHHHHHHHHhC--CC-----eEeec
Confidence            35566 7799999999999999887  32     56776

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.56  E-value=0.0048  Score=47.47  Aligned_cols=26  Identities=27%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.+.++.|..|+||||+|..||..+.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34556668899999999999998776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.37  E-value=0.005  Score=48.33  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |.+++..+.|..|+||||+|..||..|.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455666889999999999999999988

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.27  E-value=0.01  Score=46.93  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV   79 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~   79 (294)
                      ..++.|..-+..  ....+.++.|..|+|||+++..+|..++  ..+.
T Consensus        18 TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~--~~~~   63 (258)
T d2i1qa2          18 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ--NPEF   63 (258)
T ss_dssp             CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT--CGGG
T ss_pred             CCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCC
Confidence            455677777764  3567888889999999999999999988  5544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.25  E-value=0.0052  Score=45.98  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..++.|..|+||||++..||..|.
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            344458999999999999998775

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.22  E-value=0.0051  Score=46.03  Aligned_cols=30  Identities=40%  Similarity=0.547  Sum_probs=24.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |+++ |-.|+||||++..||..|.       .-++|+|
T Consensus         3 I~li-G~~GsGKsTi~k~La~~l~-------~~~~d~d   32 (161)
T d1viaa_           3 IVFI-GFMGSGKSTLARALAKDLD-------LVFLDSD   32 (161)
T ss_dssp             EEEE-CCTTSCHHHHHHHHHHHHT-------CEEEEHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHhC-------CCEEecC
Confidence            5555 7799999999999999998       3466776

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.059  Score=39.98  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC-C-eeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI-P-IIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~-~-~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.+.|+++.-....+ .-..+  ..+|.++++.+.+ ..++.....+...+.+... . .+.+|.|+.+..     ..
T Consensus        55 ~~~~~~d~~g~~~~~~~-~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~  126 (170)
T d1r2qa_          55 VKFEIWDTAGQERYHSL-APMYY--RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NK  126 (170)
T ss_dssp             EEEEEEEECCSGGGGGG-HHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred             EEEEeccCCCchhhhhh-HHHHh--hCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccc-----cc
Confidence            67888888854321111 11122  5788888887644 4677777777777654332 2 456778998842     22


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.   .+..+++.+..+.++.
T Consensus       127 ~~v~---~e~~~~~~~~~~~~~~  146 (170)
T d1r2qa_         127 RAVD---FQEAQSYADDNSLLFM  146 (170)
T ss_dssp             CCSC---HHHHHHHHHHTTCEEE
T ss_pred             cccc---HHHHHHHHHhcCCEEE
Confidence            2222   3456677776676554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0098  Score=46.57  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +.++.|--|+||||.+..|+..|.  ..|.+|.+++.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~--~~g~~v~~~~~   39 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALC--AAGHRAELLRF   39 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEeC
Confidence            444447788999999999999999  89999998864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.07  E-value=0.0067  Score=45.18  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=18.0

Q ss_pred             EecCCCchHHHHHHHHHHHHh
Q psy11347         53 LSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        53 ~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.|..|+||||+|..||..|.
T Consensus         9 i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           9 LTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EECSTTSSHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHC
Confidence            448889999999999998776

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.011  Score=48.65  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~   88 (294)
                      ..+.|.-++|..|+||||+|..|...|.+.. ...+|.++-.|-
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd   68 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   68 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC
Confidence            3566777889999999999999998886111 245788888874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.12  Score=37.98  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.+.|+++.....   .+....-..+|.++++.+.+. .++..+...++.+...  ....+.+|.|+.+..     ..
T Consensus        52 ~~~~~~d~~g~~~~~---~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~-----~~  123 (167)
T d1z08a1          52 VNLAIWDTAGQERFH---ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KE  123 (167)
T ss_dssp             EEEEEEECCCC----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GG
T ss_pred             ceeeeeccCCcceec---ccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccc-----cc
Confidence            778888988543311   111111157898998887765 6788888777766533  233455778998843     22


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +.+.   .+.++++.+..+.++.
T Consensus       124 ~~v~---~~e~~~~a~~~~~~~~  143 (167)
T d1z08a1         124 RHVS---IQEAESYAESVGAKHY  143 (167)
T ss_dssp             CCSC---HHHHHHHHHHTTCEEE
T ss_pred             cccc---hHHHHHHHHHcCCeEE
Confidence            2222   3456777777777655

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.85  E-value=0.063  Score=39.72  Aligned_cols=32  Identities=25%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         55 GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        55 ~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      .-.|=||||-|..+|...+  -.|+||+++-+=-
T Consensus         9 tG~GKGKTTAAlG~alRA~--G~G~rV~ivQFlK   40 (157)
T d1g5ta_           9 TGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIK   40 (157)
T ss_dssp             ESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred             eCCCCCcHHHHHHHHHHHh--cCCCEEEEEEEec
Confidence            4567789999999999999  8999999997643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.11  Score=38.12  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+.-....+ .-..+  ..+|.++++.+.+. .+...+......+....  .....++.|+.+.      ..
T Consensus        51 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~------~~  121 (166)
T d1g16a_          51 VKLQIWDTAGQERFRTI-TTAYY--RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ET  121 (166)
T ss_dssp             EEEEEECCTTGGGTSCC-CHHHH--TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TT
T ss_pred             EEEEEEECCCchhhHHH-HHHHH--hcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh------hh
Confidence            77889999853211000 01122  57898888887655 55555665555554433  2234455666542      11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..   ...+.++++.+..++++.
T Consensus       122 ~~---~~~~~~~~~~~~~~~~~~  141 (166)
T d1g16a_         122 RV---VTADQGEALAKELGIPFI  141 (166)
T ss_dssp             CC---SCHHHHHHHHHHHTCCEE
T ss_pred             hh---hhHHHHHHHHHhcCCeEE
Confidence            11   234566777777777765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.054  Score=40.37  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=47.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC--CeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI--PIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+-|+|+|+.-...   .+....-..+|.+|++.+.+ ..++..+..+...+.....  ..+.+|.|+.+..     ..
T Consensus        55 ~~l~i~D~~G~e~~~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~-----~~  126 (173)
T d2fu5c1          55 IKLQIWDTAGQERFR---TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DK  126 (173)
T ss_dssp             EEEEEEEC------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SC
T ss_pred             EEEEEEECCCchhhH---HHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccch-----hh
Confidence            677889998532211   11111115789899888754 4778888888777764432  3566888998742     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..   ...+.+..+.+..+.++.
T Consensus       127 ~~---~~~~~~~~~~~~~~~~~~  146 (173)
T d2fu5c1         127 RQ---VSKERGEKLALDYGIKFM  146 (173)
T ss_dssp             CC---SCHHHHHHHHHHHTCEEE
T ss_pred             cc---cHHHHHHHHHHhcCCEEE
Confidence            11   122344555666666654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.68  E-value=0.027  Score=44.57  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=41.5

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC   89 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~   89 (294)
                      ..++.|...+..  ....++++.|..|+||||++.++|...+  .      .+.+++++++...
T Consensus        20 TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~--~~~~~~~~~~~~~~~~~~~~   81 (254)
T d1pzna2          20 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTENT   81 (254)
T ss_dssp             CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTSCSCEEEEEESSSC
T ss_pred             CCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhh--chHHhcCCCceEEEEeccch
Confidence            455666666654  3567888889999999999999999877  3      3678888888654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.014  Score=45.92  Aligned_cols=57  Identities=18%  Similarity=0.084  Sum_probs=41.7

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhh----cCCCCcEEEEecCCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAK----SNESVDVGVLDLDICG   90 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~----~~~g~~VlliD~D~~~   90 (294)
                      ..++.|...+..  ....+..+.|..|+||||++..+|.....    ...+.+++++|+....
T Consensus        18 TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2          18 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             CSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred             CCCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchH
Confidence            345666666654  34568888899999999999999876540    0346789999997654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.26  Score=35.85  Aligned_cols=89  Identities=25%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+-+.|+++.-..... ....+  ..+|.++++.+. +..++..+..++..+....  ...+.+|.|+.|..     ..
T Consensus        49 ~~~~i~d~~g~~~~~~~-~~~~~--~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~  120 (164)
T d1yzqa1          49 IRLQLWDTAGQERFRSL-IPSYI--RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-----DK  120 (164)
T ss_dssp             EEEEEEEECCSGGGGGG-HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-----GG
T ss_pred             eeeeecccCCcchhccc-hHHHh--hccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh-----hh
Confidence            66778888853321111 11222  578988888766 4477888888877765432  22466777998842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..   ...+..+++.+..+.++.
T Consensus       121 ~~---~~~~~~~~~~~~~~~~~~  140 (164)
T d1yzqa1         121 RQ---VSIEEGERKAKELNVMFI  140 (164)
T ss_dssp             CC---SCHHHHHHHHHHTTCEEE
T ss_pred             hh---hhHHHHHHHHHHcCCEEE
Confidence            11   123456677777776654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.50  E-value=0.11  Score=36.41  Aligned_cols=35  Identities=23%  Similarity=0.103  Sum_probs=25.3

Q ss_pred             EEEEecCCCchHHHHHH-HHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTN-LLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~-~LA~~la~~~~g~~VlliD~   86 (294)
                      ..++....|+|||+++. .+...+.  ..+.+++++-.
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~~--~~~~~vli~~p   44 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAECA--RRRLRTLVLAP   44 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHH--HTTCCEEEEES
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHhh--hcCceeeeeec
Confidence            45667779999998875 4455666  67888888753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.092  Score=39.91  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.|+|+|+.-....+ ....+  ..++.+|++.+.+. .+...+......+.+..  ...+.+|.|+.+..     ..
T Consensus        55 ~~l~i~Dt~G~e~~~~~-~~~~~--~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-----~~  126 (194)
T d2bcgy1          55 VKLQIWDTAGQERFRTI-TSSYY--RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-----DK  126 (194)
T ss_dssp             EEEEEECCTTTTTTTCC-CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred             EEEEEEECCCchhhHHH-HHHHh--ccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccc-----cc
Confidence            67888999853221100 11122  57888888888764 67777777777775433  23567888987742     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+   ..+......+..+.++.
T Consensus       127 ~~~---~~~~~~~~~~~~~~~~~  146 (194)
T d2bcgy1         127 RVV---EYDVAKEFADANKMPFL  146 (194)
T ss_dssp             CCS---CHHHHHHHHHHTTCCEE
T ss_pred             cch---hHHHHhhhhhccCcceE
Confidence            222   23444555556666554

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.1  Score=38.79  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcCCC--eeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVNIP--IIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~  228 (294)
                      +.+-|.|+++.-.... .....+  ..+|.+|++.+. +..++..+.+++..+.+...+  .+-+|.|+.+.
T Consensus        53 ~~~~i~d~~g~e~~~~-~~~~~~--~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl  121 (175)
T d2f9la1          53 IKAQIWDTAGQERYRR-ITSAYY--RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL  121 (175)
T ss_dssp             EEEEEEECSSGGGTTC-CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEecccCCcHHHHH-HHHHHh--hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecc
Confidence            6778888885321000 011112  578888888766 448888888888888665432  35677799984

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.13  Score=38.63  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=51.3

Q ss_pred             ccEEEEcCCCCCChHHHHHH-HHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLV-QYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~-~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.+.|+++.-.  +..+. ..+  ..+|.+|++.+.+. .++..+..++..+...   ....+.+|.|+.+..     
T Consensus        64 ~~~~i~dt~G~e~--~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----  134 (186)
T d2f7sa1          64 VHLQLWDTAGQER--FRSLTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----  134 (186)
T ss_dssp             EEEEEEEEESHHH--HHHHHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----
T ss_pred             EEeccccCCcchh--hHHHHHHHH--hcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch-----
Confidence            5678888874221  11111 122  57999998887654 5666666555544332   223567888998842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+++.   .+...++.+..+++++
T Consensus       135 ~~~~v~---~~e~~~~~~~~~~~~~  156 (186)
T d2f7sa1         135 DQREVN---ERQARELADKYGIPYF  156 (186)
T ss_dssp             GGCCSC---HHHHHHHHHHTTCCEE
T ss_pred             hhhcch---HHHHHHHHHHcCCEEE
Confidence            222222   3445777777887665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.19  E-value=0.023  Score=46.34  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=26.3

Q ss_pred             ChHHHHhhhcc---CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSN---VKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~---~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      -.+.|...+..   ....+..+.|-||+||||+|..+.....
T Consensus        28 ~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~   69 (277)
T d2a5yb3          28 HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD   69 (277)
T ss_dssp             HHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhh
Confidence            34455555532   2345666668999999999999877643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.15  E-value=0.028  Score=39.60  Aligned_cols=39  Identities=10%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      -..|+.+-.|+||||+|..|...|-+..-|++|-++|.|
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            345667888999999999998888721236899999887

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.0062  Score=48.96  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS   92 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~   92 (294)
                      +..++++ |++|+||||+...|+..+.  ....+|.+-+.|...-+
T Consensus        29 Ge~vaIv-G~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~   71 (241)
T d2pmka1          29 GEVIGIV-GRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALAD   71 (241)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSC
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEecccc
Confidence            4555555 8899999999999999998  77788888777665434

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.28  Score=36.35  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC---CCeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN---IPIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~~~~~~~~  235 (294)
                      +.+.|+|+|+.-....+ ....+  ..+|.++++.+. +..++..+..++..+.+..   ...+.++.|+.+.      .
T Consensus        56 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~------~  126 (177)
T d1x3sa1          56 AKLAIWDTAGQERFRTL-TPSYY--RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------E  126 (177)
T ss_dssp             EEEEEEEECSSGGGCCS-HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------S
T ss_pred             cEEEEEECCCchhhHHH-HHHHH--hcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccc------c
Confidence            78899999853221111 11122  578988888874 5577888888888876542   2356788898763      2


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...+.   .....++.+..++++.
T Consensus       127 ~~~v~---~~~~~~~~~~~~~~~~  147 (177)
T d1x3sa1         127 NREVD---RNEGLKFARKHSMLFI  147 (177)
T ss_dssp             SCCSC---HHHHHHHHHHTTCEEE
T ss_pred             ccccc---HHHHHHHHHHCCCEEE
Confidence            22222   3455677777776554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.04  E-value=0.042  Score=43.73  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=30.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ...++.|..|+||||++..++..+. ...+.++..+.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~-~~~~~~~~~~~~~~   82 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYINGFI   82 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEETTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh-cccCCcEEEecchh
Confidence            4566779999999999999999998 34566777676654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.84  E-value=0.018  Score=44.17  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             cCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+++++ ++ |..|+||||++..||..+.
T Consensus         5 r~mrIi-li-G~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           5 RLLRAA-IM-GAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCCEEE-EE-CCTTSSHHHHHHHHHHHBC
T ss_pred             cceeEE-EE-CCCCCCHHHHHHHHHHHHC
Confidence            445544 44 8889999999999988665

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.82  E-value=0.017  Score=44.25  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +++|.++ |..|+||||+|..||..+.
T Consensus         8 ~~iI~l~-G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           8 SKIIFVV-GGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             SCEEEEE-ECTTSSHHHHHHHHHHHTC
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            5666666 6699999999999887665

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.019  Score=43.94  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++|+++ |..|+||||+|..||..+.
T Consensus         8 ~~iI~i~-GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVL-GGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEE-CSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            3455555 7889999999999988776

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.025  Score=43.91  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=22.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |+++| .+.|..|+||||+|..||..|.
T Consensus         2 ~~piI-~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           2 IAPVI-TIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CSCEE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEE-EEECCCCCCHHHHHHHHHHHhC
Confidence            34555 5568899999999999999988

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.62  E-value=0.031  Score=43.73  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .++.|..|+|||.++.+++..+.  ..+.+|+++++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~--~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD   73 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc--cCccceEEechH
Confidence            46779999999999999999999  889999999774

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.026  Score=43.03  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||+|..||..+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            345557799999999999998776

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.60  E-value=0.35  Score=39.95  Aligned_cols=33  Identities=15%  Similarity=0.383  Sum_probs=26.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .+++|..|+||||+...|..++.   ...|++.|+-
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~---~~~rivtiEd  201 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP---KEERIISIED  201 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEES
T ss_pred             EEEEeeccccchHHHHHHhhhcc---cccceeeccc
Confidence            46679999999999999988776   4677877744

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.051  Score=41.80  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .-+..|..-+....+.=.++-|..|||||+++..||..+.
T Consensus        29 ~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          29 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            4466777777776665667779999999999999999998

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.41  Score=36.65  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             HHHHhhhccC--ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         37 ELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        37 ~~i~~~~~~~--~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ..+.......  +..+. +.|..|+||||++..+|..|-
T Consensus        12 ~~l~~~~~~~~l~h~lL-l~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          12 EKLVASYQAGRGHHALL-IQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHHHHHHHTTCCCSEEE-EECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcCeEEE-EECCCCCcHHHHHHHHHHhcc
Confidence            4444444432  33444 457899999999999999987

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.44  Score=39.31  Aligned_cols=115  Identities=15%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI  125 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (294)
                      ..+++.++++.-.+||=|.+..|...+.  ++|.++-++-+-..+    .+.+-+...      .++.+           
T Consensus       156 ~~~rvl~vGTDca~GK~tTal~l~~~l~--~~G~~a~fiaTGQTG----ili~g~~Gv------~~Dav-----------  212 (338)
T d2g0ta1         156 KIKVVGVFGTDCVVGKRTTAVQLWERAL--EKGIKAGFLATGQTG----ILIGADAGY------VIDAV-----------  212 (338)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEEECSHHH----HHTTCSEEC------CGGGS-----------
T ss_pred             CCcEEEEeccCccccHHHHHHHHHHHHH--hCCCCeeEEEcCCee----Eeeccccce------ecCcc-----------
Confidence            5899999999999999999999999999  899999999774321    222111000      00000           


Q ss_pred             ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhcCCCcEEEEecCCc
Q psy11347        126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKGLPDIGAIVVTTPQ  197 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~~~ad~vliv~~~~  197 (294)
                                   ........+..++-....++ +|+|||..-+++..+.  -.++..|.....|++|+.-.++
T Consensus       213 -------------~~DfvaGavE~~v~~~~~~~-~d~iiIEGQgSL~hP~~s~vtl~LL~Gs~Pd~lVL~H~p~  272 (338)
T d2g0ta1         213 -------------PADFVSGVVEKAVLKLEKTG-KEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPS  272 (338)
T ss_dssp             -------------BGGGHHHHHHHHHHHHHHTT-CSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTT
T ss_pred             -------------hhhhhHHHHHHHHhhhhcCC-CCEEEEcccccccccccccccHHHHhcCCCCEEEEeecCC
Confidence                         01112224444443332224 8999999997775442  2345556667899998875554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.13  E-value=0.021  Score=43.03  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=18.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHH
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA   69 (294)
                      .+.+.++.|-.|+||||+|..|+
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34577778999999999987664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.036  Score=42.90  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ++-|+| -|--|+||||.+..|+..|.  ..|.++.++---|
T Consensus         2 gkfIvi-EG~dGsGKsT~~~~L~~~L~--~~g~~~~~~~~ep   40 (210)
T d4tmka_           2 SKYIVI-EGLEGAGKTTARNVVVETLE--QLGIRDMVFTREP   40 (210)
T ss_dssp             CCEEEE-EECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESS
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHH--hCCCCeEEEecCC
Confidence            344444 57889999999999999999  7888766664444

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.03  E-value=0.033  Score=42.00  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=19.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |+|+ |..|+||||++..||..+.
T Consensus         5 Ivl~-G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLI-GPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEE-CCTTSSHHHHHHHHHHHHC
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHhC
Confidence            4444 8899999999999998776

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.98  E-value=0.037  Score=42.01  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .|.++ |..|+||||+|..||..+.
T Consensus         5 riil~-G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLL-GPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            34454 8899999999999998776

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.96  E-value=0.042  Score=43.06  Aligned_cols=39  Identities=31%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ....|+.-+.....-..++.|..|+||||++..+|..+.
T Consensus        32 ~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          32 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            344455555544333467789999999999999999887

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.034  Score=42.49  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC
Q psy11347         34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES   78 (294)
Q Consensus        34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g   78 (294)
                      ..++.|...+..  ....+..+.|..|+||||++.++|...+  ..+
T Consensus         7 TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~--~~~   51 (242)
T d1n0wa_           7 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQ--LPI   51 (242)
T ss_dssp             CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTT--SCG
T ss_pred             CCCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHH--Hhh
Confidence            345566666653  3566888889999999999999999887  544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.82  E-value=0.074  Score=41.68  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=48.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+-|||+|+... ..-.+...+  ..+|..|+|++....-.       ..+...+......+.+.+-+++|+.+.
T Consensus        81 ~~i~iiDtPGH~d-f~~~~~~g~--~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~  153 (224)
T d1jnya3          81 YFFTIIDAPGHRD-FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL  153 (224)
T ss_dssp             CEEEECCCSSSTT-HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred             ceeEEeeCCCcHH-HHHHHHHHH--HhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccC
Confidence            8899999997654 344455555  78999999998876432       345556666667788877788999984

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.75  E-value=0.028  Score=42.79  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             EecCCCchHHHHHHHHHHHHh
Q psy11347         53 LSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        53 ~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.|..|+||||+|..||..+.
T Consensus         8 i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           8 ISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             EEESTTSSHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHC
Confidence            457789999999999998887

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.70  E-value=0.036  Score=41.57  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEecCCCchHHHHHHHHHHHHh
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.|..|+||||+|..||..+.
T Consensus         4 ~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           4 VLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHC
Confidence            3558899999999999998876

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.68  E-value=0.075  Score=42.39  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      +.+.++|+|+... ....+...+  ..+|.+++|++.......       .+...+..+...+++.+.+++|+.+.
T Consensus       102 ~~i~~iDtPGH~d-f~~~~~~g~--~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~  174 (245)
T d1r5ba3         102 RRFSLLDAPGHKG-YVTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE  174 (245)
T ss_dssp             EEEEECCCCC------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred             ceeeeeccccccc-chhhhhhhh--hhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            7899999997654 223344444  689999999988765544       57777888888899988899999984

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.68  E-value=0.04  Score=41.55  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEecCCCchHHHHHHHHHHHHh
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.|..|+||||+|..||..+.
T Consensus         4 ~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           4 VLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHC
Confidence            3458899999999999999887

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.60  E-value=0.56  Score=33.65  Aligned_cols=39  Identities=21%  Similarity=0.032  Sum_probs=33.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+-++-|.-.+||||-....+..+.  ..|++|+++--.
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~~--~~g~~vl~i~~~   44 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFKPE   44 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHhh--hcCCcEEEEEec
Confidence            455777789999999999999999999  899999998653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.59  E-value=0.78  Score=34.80  Aligned_cols=24  Identities=8%  Similarity=0.087  Sum_probs=20.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      -.++.|..|+||||+|..|+.++.
T Consensus        17 ~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          17 SILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            445557899999999999999887

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.054  Score=42.37  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhc-CCCCcEEEEecC
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKS-NESVDVGVLDLD   87 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~-~~g~~VlliD~D   87 (294)
                      ..+..|+.-+.....--.++.|..|+||||++..+|..+... ........++..
T Consensus        19 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~   73 (237)
T d1sxjd2          19 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS   73 (237)
T ss_dssp             TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecc
Confidence            345666666555432235677999999999999999987510 123455555543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.54  E-value=0.38  Score=34.51  Aligned_cols=39  Identities=18%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+-++-|.-.+||||=....+..+.  ..|++|+++-...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~--~~~~kv~~ikp~~   40 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKI   40 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH--HCCCcEEEEEEcc
Confidence            34667779999999998888888888  8999999986644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.13  Score=40.20  Aligned_cols=57  Identities=12%  Similarity=0.093  Sum_probs=41.5

Q ss_pred             CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhc----CCCCcEEEEecCCC
Q psy11347         33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKS----NESVDVGVLDLDIC   89 (294)
Q Consensus        33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~----~~g~~VlliD~D~~   89 (294)
                      ...++.|...+..  ....+..+.|..|+|||+++.++|....+.    ..+..|++++....
T Consensus        20 ~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1v5wa_          20 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT   82 (258)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             cCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHH
Confidence            4556777777764  356688888999999999999999865510    23456888888654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.47  E-value=0.04  Score=41.46  Aligned_cols=21  Identities=43%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             EecCCCchHHHHHHHHHHHHh
Q psy11347         53 LSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        53 ~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.|..|+||||+|..||..+.
T Consensus         5 i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           5 LLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EECCTTSSHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHC
Confidence            348899999999999998887

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.076  Score=42.95  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.-+..|..-+....+.=.++-|..|||||+++..||..+.
T Consensus        24 d~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          24 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            34466777777766665566779999999999999999988

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.04  Score=41.72  Aligned_cols=27  Identities=37%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      |+.+.+++|++|+||||+...|.....
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            344566689999999999987776543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.34  E-value=0.045  Score=43.70  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .+...++.|..|+||||+|..||..+.  .   ..+.+++|
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~--~---~~~~i~~d   66 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ--G---NVIVIDND   66 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--T---CCEEECTH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh--c---ceEEEecH
Confidence            344566779999999999999888776  2   46666654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.24  E-value=0.038  Score=46.26  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=32.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      |..+..++-|-=|+||||++..|+..+.  ..|.+|.++.-
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l~--~~g~~v~~~~E   41 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHFA--ITPNRILLIGE   41 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTT--TSGGGEEEECC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHh--hcCCceEEEeC
Confidence            4445566778889999999999999999  88999999854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.044  Score=43.14  Aligned_cols=23  Identities=35%  Similarity=0.707  Sum_probs=19.8

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||+|..||..+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHhccC
Confidence            45568899999999999998877

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.08  E-value=0.042  Score=43.43  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=17.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHH
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLAR   70 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~   70 (294)
                      |++|+++| +-|+||||+|..|+.
T Consensus         1 M~iIgiTG-~igSGKsTva~~l~e   23 (241)
T d1deka_           1 MKLIFLSG-VKRSGKDTTADFIMS   23 (241)
T ss_dssp             CEEEEEEC-CTTSSHHHHHHHHHH
T ss_pred             CEEEEEEC-CCCCCHHHHHHHHHH
Confidence            67787774 468999998877754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.55  E-value=0.055  Score=42.59  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=19.8

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||+|..+|..+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44679999999999999998776

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.11  Score=40.38  Aligned_cols=37  Identities=30%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      ++..++|+|+|.   .||||++..|+..|.  ..|+++.++.
T Consensus         2 s~~~~vI~ITGT---~GKTTt~~~l~~iL~--~~g~~~~~~g   38 (234)
T d1e8ca3           2 SDNLRLVGVTGT---NGKTTTTQLLAQWSQ--LLGEISAVMG   38 (234)
T ss_dssp             GGSSEEEEEESS---SCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             CcCCeEEEEECC---CcHHHHHHHHHHHHH--HCCCCeEEEC
Confidence            345678888855   579999999999999  8999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.47  E-value=0.053  Score=42.88  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .++.|..|+||||++..+|..+-  ..+.....++.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~--~~~~~~~~~~~   69 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF--GPGVYRLKIDV   69 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS--CTTCCC-----
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc--Ccccccccccc
Confidence            45779999999999999999986  44444444333

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.40  E-value=0.066  Score=41.71  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=26.8

Q ss_pred             hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ...|+.-+.....--.++.|..|+||||++..+|..+.
T Consensus        24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            44555544443222255678899999999999999987

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.39  E-value=0.14  Score=42.43  Aligned_cols=54  Identities=20%  Similarity=0.290  Sum_probs=34.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC--CChhhhcccccc
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG--PSMPRMMGLLNE  102 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~--~~l~~~lg~~~~  102 (294)
                      +..+..+.|..|+|||.+|..||..|.  ..+.++.-+|+-...  ...+.++|..+.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~--~~~~~~~~~~~~~~~~~~~~~~L~g~~~g  107 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHAVSRLIGAPPG  107 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGGGGGC------
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhc--CCCcceEEEeccccccchhhhhhcCCCCC
Confidence            343556779999999999999999998  667778778775332  133445555443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.076  Score=45.69  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      .++-|..|+|||++...+...+.  ..|..++++|..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~--~~g~~~iiiD~k   87 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGL--LRGDRMVIVDPN   87 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH--HTTCEEEEEEET
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence            45668999999999988888888  789999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.06  Score=42.63  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..++.|..|+||||++..+|..+.     ..+..++...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~~~   87 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASD   87 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH-----hhhhcccccc
Confidence            566668899999999999998765     3566666543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.10  E-value=0.032  Score=42.55  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.+.++-|--|+||||++..|+..+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445666778999999999988877665

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.95  E-value=0.066  Score=40.30  Aligned_cols=24  Identities=46%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|..|+||||++..|...+.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            556779999999999988877665

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.073  Score=39.82  Aligned_cols=20  Identities=20%  Similarity=0.235  Sum_probs=17.5

Q ss_pred             ecCCCchHHHHHHHHHHHHh
Q psy11347         54 SGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        54 s~kGGvGKTTia~~LA~~la   73 (294)
                      .|..|+||||++..||..+.
T Consensus         6 ~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EESTTSSHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            47889999999999998776

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.64  E-value=0.039  Score=45.12  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV   81 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~V   81 (294)
                      +..++++ |.+|+||||+...|+..+.  .....|
T Consensus        62 Ge~vaiv-G~nGsGKSTLl~~i~Gl~~--p~~G~I   93 (281)
T d1r0wa_          62 GEMLAIT-GSTGSGKTSLLMLILGELE--ASEGII   93 (281)
T ss_dssp             TCEEEEE-ESTTSSHHHHHHHHHTSSC--CSEEEE
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhCCCc--CCCcEE
Confidence            4555555 8999999999999999887  554444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.32  E-value=0.076  Score=42.37  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.++.|..|+||||++..++..|.
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHH
Confidence            3556679999999999999999986

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.30  E-value=0.091  Score=41.32  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .++....|+|||+++...+..+.  ..|.+|+++-
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~--~~~~rvliv~   93 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIF   93 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEE
T ss_pred             EEEEecCCChHHHHHHHHHHHHH--HhcCeEEEEe
Confidence            34457899999999988888888  7899999883

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.12  Score=40.56  Aligned_cols=34  Identities=35%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHH
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLAR   70 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~   70 (294)
                      ..++.|++.+.  .+ .+++.|.+||||||+...|..
T Consensus        84 ~g~~~L~~~l~--~k-t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          84 MGIEELKEYLK--GK-ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             TTHHHHHHHHS--SS-EEEEECSTTSSHHHHHHHHST
T ss_pred             hhHhhHHHHhc--CC-eEEEECCCCCCHHHHHHhhcc
Confidence            45667777664  33 445669999999999998853

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=90.27  E-value=0.2  Score=43.91  Aligned_cols=52  Identities=27%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             CceEEEEEec---CCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347         46 VKHKVLVLSG---KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE  102 (294)
Q Consensus        46 ~~~~i~v~s~---kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~  102 (294)
                      .+|.|.|++-   +-|.||||++..|+..|.  +.|+++.+.   ...|++--.||....
T Consensus        50 ~gklilVTaitPTp~GEGKtTttiGL~~aL~--~lgk~~~~~---lRePSlGP~fGiKGG  104 (549)
T d1eg7a_          50 DGKLILVTAITPTPAGEGKTTTSVGLTDALA--RLGKRVMVC---LREPSLGPSFGIKGG  104 (549)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHH--HTTCCEEEE---ECCCCSTHHHHTTCC
T ss_pred             CceEEEEEeCCCCCCCCCcceeHHhHHHHHH--HhCCceEEE---EecCCCCCccccccC
Confidence            4678877764   459999999999999999  899999887   456677777776644

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.24  E-value=0.11  Score=41.15  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=26.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      ...+.++.|.+|+|||+++..++..+.     ....++++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~-----~~~~~i~~~   63 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLR   63 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC-----CCeEEEEec
Confidence            344566779999999999988776655     356666664

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.18  E-value=0.13  Score=36.50  Aligned_cols=33  Identities=33%  Similarity=0.301  Sum_probs=25.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ....+++.+..|+|||+++.   .++.  ..|++|+++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~---~~~~--~~~~~vli~   39 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVP---AAYA--AQGYKVLVL   39 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHH---HHHH--TTTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHH---HHHH--HcCCcEEEE
Confidence            34578888999999998764   3456  678888887

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.01  E-value=0.15  Score=39.16  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=23.1

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |+.+|+++ |.-|+||||++.    +|.  +.|..|  +|+|-
T Consensus         1 M~~iIgIT-G~igSGKStv~~----~l~--~~G~~v--idaD~   34 (205)
T d1jjva_           1 MTYIVGLT-GGIGSGKTTIAN----LFT--DLGVPL--VDADV   34 (205)
T ss_dssp             CCEEEEEE-CSTTSCHHHHHH----HHH--TTTCCE--EEHHH
T ss_pred             CcEEEEEE-CCCCCCHHHHHH----HHH--HCCCeE--EEchH
Confidence            34455555 778899999754    567  677665  57763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.97  E-value=0.14  Score=38.85  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ++....|+|||+++..++.... ...+.+++++
T Consensus        27 lv~~pTGsGKT~i~~~~~~~~~-~~~~~~il~i   58 (200)
T d1wp9a1          27 LIVLPTGLGKTLIAMMIAEYRL-TKYGGKVLML   58 (200)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHH-HHSCSCEEEE
T ss_pred             EEEeCCCCcHHHHHHHHHHHHH-HhcCCcEEEE
Confidence            4557899999999888877654 1567788777

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.025  Score=44.59  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +|.|+|- |--|+||||++..|+..|.
T Consensus         2 ~k~I~ie-G~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIE-GNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEE-CSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHHh
Confidence            5556655 7788999999999999887

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.11  Score=40.46  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=24.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .++.|..|+||||++..+|..+.  ........++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~--~~~~~~~~~e~   71 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLEL   71 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEE
T ss_pred             EEEECCCCCChhHHHHHHHHHhh--cCCCcceeEEe
Confidence            45678999999999999999987  54443333333

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.13  Score=39.70  Aligned_cols=33  Identities=39%  Similarity=0.520  Sum_probs=22.4

Q ss_pred             ce-EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KH-KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~-~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      |+ +|+++ |.-|+||||++..    |.  +.|..  ++|+|-
T Consensus         2 mk~iIgit-G~igSGKStv~~~----l~--~~G~~--vidaD~   35 (208)
T d1vhta_           2 LRYIVALT-GGIGSGKSTVANA----FA--DLGIN--VIDADI   35 (208)
T ss_dssp             CCEEEEEE-CCTTSCHHHHHHH----HH--HTTCE--EEEHHH
T ss_pred             CCEEEEEE-CCCcCCHHHHHHH----HH--HCCCc--EEEchH
Confidence            55 45554 6679999998764    56  56764  567763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.28  E-value=0.17  Score=40.12  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.|. +.|..|+|||+++..+|..+.
T Consensus        41 ~~vL-L~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVL-LEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEE-EECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEE-EECcCCCCHHHHHHHHhhccc
Confidence            3344 558889999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.12  Score=40.57  Aligned_cols=24  Identities=42%  Similarity=0.621  Sum_probs=20.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++-|--|+||||++..|+..|.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            445568889999999999999998

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.99  E-value=1.2  Score=35.89  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=17.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHH
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLAR   70 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~   70 (294)
                      ..++++ |+..|||||+-..|..
T Consensus        11 ~kiGiv-G~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          11 LKTGIV-GMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CEEEEE-ECSSSSHHHHHHHHHH
T ss_pred             cEEEEE-CCCCCCHHHHHHHHHC
Confidence            347777 8899999999988874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=88.95  E-value=0.31  Score=35.81  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+..+.+..|.=|+||||++..++..|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3566788889999999999999999999

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.74  E-value=0.14  Score=38.84  Aligned_cols=23  Identities=43%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .|+.|..|+||||++..|+..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            45779999999999999888876

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.73  E-value=0.61  Score=37.35  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHH
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLLARV   71 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~LA~~   71 (294)
                      |.-.++++ |+..|||||+-..|...
T Consensus         1 m~~~~Giv-G~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIV-GLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEE-CCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEE-CCCCCCHHHHHHHHHCC
Confidence            44567777 88999999999877653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.85  Score=33.16  Aligned_cols=89  Identities=12%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CC-eeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IP-IIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~-~~~vvvN~~~~~~~~~~~  235 (294)
                      +++.+.|+++.-....+ ....+  ..+|.++++.+.+ ..++..+..++..+....  .. .+.+|.|+.|..     .
T Consensus        48 ~~l~i~D~~g~e~~~~~-~~~~~--~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-----~  119 (168)
T d2gjsa1          48 ASLMVYDIWEQDGGRWL-PGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-----R  119 (168)
T ss_dssp             EEEEEEECC-------C-HHHHH--TSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG-----G
T ss_pred             cceeeeeccccccccee-cccch--hhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchh-----h
Confidence            78999999964321111 11223  5899988887654 478888888888775432  11 356788998842     1


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ...+   .....+++.+..+.+++
T Consensus       120 ~~~v---~~~~~~~~~~~~~~~~~  140 (168)
T d2gjsa1         120 SREV---SVDEGRACAVVFDCKFI  140 (168)
T ss_dssp             GCCS---CHHHHHHHHHHHTSEEE
T ss_pred             hcch---hHHHHHHHHHhcCCEEE
Confidence            1122   23445677777777655

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.14  Score=39.53  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+.+++|.+|||||||...|.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3667889999999999988877654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.42  E-value=0.12  Score=38.96  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHh
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .++.|..|+||||++..|+..+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            46779999999999999988776

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.39  E-value=0.19  Score=42.74  Aligned_cols=40  Identities=30%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .-+..+..-|....+-=.++-|..|||||+++..||..+.
T Consensus        29 ~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          29 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            4455566666554443334448889999999999999887

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.18  E-value=0.26  Score=41.43  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhh--cCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAK--SNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~--~~~g~~VlliD   85 (294)
                      ...++++.|..|+||||+...+...+.+  ...+.+|++.-
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            3568899999999999998776555531  13566777763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=88.16  E-value=0.28  Score=38.91  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=24.4

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .++.|..|+|||+++..+|..+     +.+++.+++
T Consensus        45 iLl~GppGtGKT~la~aia~~~-----~~~~~~i~~   75 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA-----RVPFITASG   75 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred             EEEecCCCCChhHHHHHHHHHc-----CCCEEEEEh
Confidence            4566889999999999999654     457777765

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=87.73  E-value=0.24  Score=37.64  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      .|+|+|+|..   ||||++..++..|.  ..|.+|.+.
T Consensus         2 ~kvI~VTGTn---GKTTt~~mi~~iL~--~~g~~~~~~   34 (214)
T d1gg4a4           2 ARVVALTGSS---GKTSVKEMTAAILS--QCGNTLYTA   34 (214)
T ss_dssp             CEEEEEECSS---CHHHHHHHHHHHHT--TTSCEEECC
T ss_pred             CCEEEEeCCC---cHHHHHHHHHHHHH--hCCCCEEEe
Confidence            4678888665   59999999999999  889887653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.72  E-value=0.13  Score=39.85  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++.|+ +-|--|+||||.+..|+..|.
T Consensus         3 Gk~I~-iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           3 GKLIL-IEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCEEE-EEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEE-EECCCCCcHHHHHHHHHHHHH
Confidence            44455 557788999999999999998

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.41  E-value=0.31  Score=39.60  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +...++|.|+|+.   ||||++..++..|.  ..|++|.++-.
T Consensus        36 ~~~lkvI~VTGTN---GKtST~~~i~~IL~--~~G~kvG~~tS   73 (296)
T d2gc6a2          36 QQQGRYIHVTGTN---GKGSAANAIAHVLE--ASGLTVGLYTA   73 (296)
T ss_dssp             GGSSCEEEEECSS---SHHHHHHHHHHHHH--HTTCCEEEECS
T ss_pred             hhhCCEEEEeccC---cHHHHHHHHHHHHH--hcCCceeeeec
Confidence            4456788888664   59999999999999  89999998754

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.26  E-value=0.42  Score=37.48  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      .+...|.+.+.........+.|--|+|||-++...+....  ..|+.|+++
T Consensus        62 ~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~--~~g~qv~~l  110 (233)
T d2eyqa3          62 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--DNHKQVAVL  110 (233)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             HHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH--HcCCceEEE
Confidence            4455566677776666667779999999999999999988  899999998

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.15  E-value=0.16  Score=40.14  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ||++.|+++.+|.|+     .+|..|+  +.|.+|+++|.+.
T Consensus         1 mkVvlITGas~GIG~-----aiA~~la--~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGA-----ATRKVLE--AAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHH--HTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHH--HCCCEEEEEECCh
Confidence            789999999999998     4688889  8899999998754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.03  E-value=0.2  Score=41.65  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ..+-|-=|+||||++..|+..+.  .  +.|+++
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~--~--~~v~~~   36 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGS--R--DDIVYV   36 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC--------CCEEEE
T ss_pred             EEEECCcCCCHHHHHHHHHHHhC--C--CCeEEe
Confidence            34446669999999999998877  3  356665

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.97  E-value=0.18  Score=37.13  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=15.9

Q ss_pred             CceEEEEEecCCCchHHHHHHHH
Q psy11347         46 VKHKVLVLSGKGGVGKSTFTNLL   68 (294)
Q Consensus        46 ~~~~i~v~s~kGGvGKTTia~~L   68 (294)
                      ...+|+++ |.+||||||+...|
T Consensus        12 k~~kI~lv-G~~~vGKTsLl~~l   33 (186)
T d1f6ba_          12 KTGKLVFL-GLDNAGKTTLLHML   33 (186)
T ss_dssp             CCEEEEEE-EETTSSHHHHHHHH
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHH
Confidence            34556666 77889999997654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.65  E-value=0.2  Score=41.13  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      .+.+.++ |..|+|||++|..||..+.  .   ....+|+
T Consensus        49 ~~~iLl~-GPpG~GKT~lAkalA~~~~--~---~~~~i~~   82 (309)
T d1ofha_          49 PKNILMI-GPTGVGKTEIARRLAKLAN--A---PFIKVEA   82 (309)
T ss_dssp             CCCEEEE-CCTTSSHHHHHHHHHHHHT--C---CEEEEEG
T ss_pred             CceEEEE-CCCCCCHHHHHHHHhhccc--c---chhcccc
Confidence            4556554 8999999999999999876  3   3555555

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.042  Score=41.45  Aligned_cols=24  Identities=42%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +.++.|.+|+||||+.-+|...|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            556779999999999999999986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=86.30  E-value=0.21  Score=37.46  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=15.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHH
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA   69 (294)
                      .+-|.|. |++|+||||+|..|.
T Consensus        14 g~gvl~~-G~sG~GKStlal~l~   35 (176)
T d1kkma_          14 GLGVLIT-GDSGVGKSETALELV   35 (176)
T ss_dssp             TEEEEEE-CCTTSCHHHHHHHHH
T ss_pred             CEEEEEE-eCCCCCHHHHHHHHH
Confidence            3444444 899999999886543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.25  Score=37.06  Aligned_cols=30  Identities=40%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD   87 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D   87 (294)
                      |.-+.|..|+||||+|..    |.  +.|..|+  ++|
T Consensus         5 IIgitG~~gSGKstva~~----l~--~~g~~~~--~~D   34 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAAL----LR--SWGYPVL--DLD   34 (191)
T ss_dssp             EEEEEECTTSCHHHHHHH----HH--HTTCCEE--EHH
T ss_pred             EEEEECCCCCCHHHHHHH----HH--HCCCeEE--Ecc
Confidence            444557889999998764    55  5677763  444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.41  E-value=0.3  Score=37.05  Aligned_cols=32  Identities=16%  Similarity=0.081  Sum_probs=21.9

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      +++....|+|||+++........  ..+.+|+++
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~--~~~~~vl~l   74 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREA--IKGGKSLYV   74 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHh--hccCcceee
Confidence            45678899999998754444333  356678777

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=85.16  E-value=0.24  Score=37.29  Aligned_cols=42  Identities=14%  Similarity=0.123  Sum_probs=25.6

Q ss_pred             CCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        186 PDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       186 ~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      .+|.++++++.+..--.....+++.++..+.+ +.+|+|++|.
T Consensus       105 ~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~p-iivv~NK~D~  146 (195)
T d1svia_         105 ELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADK  146 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred             chhhhhhhhhccccccccccccccccccccCc-ceechhhccc
Confidence            45656666654432223445666667777776 5688899873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=0.12  Score=38.37  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=17.6

Q ss_pred             cCceEEEEEecCCCchHHHHHHHH
Q psy11347         45 NVKHKVLVLSGKGGVGKSTFTNLL   68 (294)
Q Consensus        45 ~~~~~i~v~s~kGGvGKTTia~~L   68 (294)
                      .....|+++ |..++||||+...|
T Consensus        14 ~~~~~I~lv-G~~NvGKSSL~n~L   36 (188)
T d1puia_          14 DTGIEVAFA-GRSNAGKSSALNTL   36 (188)
T ss_dssp             SCSEEEEEE-ECTTSSHHHHHTTT
T ss_pred             ccCCEEEEE-CCCCCCHHHHHHHH
Confidence            335667776 88999999988766

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=85.06  E-value=0.27  Score=36.64  Aligned_cols=19  Identities=32%  Similarity=0.576  Sum_probs=14.2

Q ss_pred             EEEecCCCchHHHHHHHHH
Q psy11347         51 LVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        51 ~v~s~kGGvGKTTia~~LA   69 (294)
                      ..+.|+.|+||||++..|.
T Consensus        18 vli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            3445899999999886544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.98  E-value=0.25  Score=37.08  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=15.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHH
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA   69 (294)
                      +-+. +.|++|+||||+|..|.
T Consensus        16 ~gvl-i~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          16 VGVL-LTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEE-EEESSSSSHHHHHHHHH
T ss_pred             EEEE-EEcCCCCCHHHHHHHHH
Confidence            3444 45899999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=2  Score=31.20  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT  234 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~  234 (294)
                      +.+.++|.+...+.........+  ..+|.+|++.+. +..++..+..+...+...    +++ +-+|.|++|..     
T Consensus        53 ~~~~~~d~~~~~g~e~~~~~~~~--~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~-----  124 (172)
T d2g3ya1          53 ATIILLDMWENKGENEWLHDHCM--QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV-----  124 (172)
T ss_dssp             EEEEEECCTTTTHHHHHHHHCCC--CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG-----
T ss_pred             eeeeeeccccccccccccccccc--cccceeeeeecccccchhhhhhhhhhhhhhccccCCce-EEEEecccccc-----
Confidence            78899999865443222111112  578988888754 447888888887777643    233 56888999842     


Q ss_pred             CCCccCCCCchhHHHHHhhcCCcee
Q psy11347        235 KPSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..+.+.   .+..+++.+..+++++
T Consensus       125 ~~~~v~---~~~~~~~a~~~~~~~~  146 (172)
T d2g3ya1         125 RCREVS---VSEGRACAVVFDCKFI  146 (172)
T ss_dssp             GGCCSC---HHHHHHHHHHHTCEEE
T ss_pred             cccccc---HHHHHHHHHHcCCeEE
Confidence            112222   3445667777777655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.32  Score=38.81  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      -..+.|..|+|||+++..+|..+.     ..++.+++
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~~~-----~~~~~i~~   78 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISG   78 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECS
T ss_pred             eEEeeCCCCCCccHHHHHHHHHcC-----CCEEEEEh
Confidence            345668899999999999997765     35666665

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.87  E-value=1.3  Score=31.71  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-CC--CeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-NI--PIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-~~--~~~~vvvN~~~~~~~~~~~  235 (294)
                      +.+.+.|.++.........-..+  ..+|.+|++.+.+. .+++.+..++..+.+. ..  ..+.+|.|+.|..     .
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~-----~  123 (165)
T d1z06a1          51 IKIQLWDTAGQERFRKSMVQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----S  123 (165)
T ss_dssp             EEEEEEECCCSHHHHTTTHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----G
T ss_pred             eEEEEEeccCchhhccccceeee--cCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch-----h
Confidence            67888888854322111122223  57899998887654 7788887777777543 21  2467888998842     1


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      ..++   ..+.++++.+..+.+++
T Consensus       124 ~~~v---~~~~~~~~~~~~~~~~~  144 (165)
T d1z06a1         124 AIQV---PTDLAQKFADTHSMPLF  144 (165)
T ss_dssp             GCCS---CHHHHHHHHHHTTCCEE
T ss_pred             ccch---hHHHHHHHHHHCCCEEE
Confidence            2222   24556778888887665

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=0.35  Score=39.80  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=34.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC--CChhhhccccccc
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG--PSMPRMMGLLNEQ  103 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~--~~l~~~lg~~~~~  103 (294)
                      ..+..+.|..|||||.+|..||..+.  .   +.+.+|+-...  +....++|..+.+
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~--~---~~i~~d~s~~~~~~~~~~l~g~~~gy  104 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHTVSRLIGAPPGY  104 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT--C---EEEEEEGGGCSSSSCCSSSCCCCSCS
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc--C---CeeEeccccccchhhhhhhcccCCCc
Confidence            33445559999999999999999887  3   46667764321  2345566665544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.57  E-value=0.36  Score=39.19  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=27.3

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      .|++|+||..-.++......+..+..... .++++.++..
T Consensus       216 ~~~~i~iDE~QD~s~~q~~~~~~l~~~~~-~~~~~gD~~Q  254 (318)
T d1pjra1         216 KFQYIHIDEYQDTNRAQYTLVKKLAERFQ-NICAVGDADQ  254 (318)
T ss_dssp             HCSEEEESSGGGCCHHHHHHHHHHHTTTC-CEEEEECGGG
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHhhc-ceeeeccccc
Confidence            39999999998888766666666544433 3666666654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=84.24  E-value=0.35  Score=40.68  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      .+...++.|..|+|||++|..||..+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            344666678999999999999999887

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.10  E-value=0.73  Score=30.16  Aligned_cols=36  Identities=17%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .|.|+|+    |.|+|-++  .|.+|.  ..|.+|.+.|.....
T Consensus         5 ~K~v~Vi----GlG~sG~s--~a~~L~--~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVII----GLGLTGLS--CVDFFL--ARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEE----CCSHHHHH--HHHHHH--HTTCCCEEEESSSSC
T ss_pred             CCEEEEE----eECHHHHH--HHHHHH--HCCCEEEEeeCCcCc
Confidence            4567777    55676665  378899  889999999986543

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.67  Score=36.77  Aligned_cols=42  Identities=19%  Similarity=0.281  Sum_probs=35.1

Q ss_pred             ceEEEEEe-cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLS-GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s-~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      ||-|.|++ .-+|.||=..|+.++..|.  .+|++|.++..||.-
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~--~~g~~V~~~K~DPYl   43 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILK--SCGLHVTSIKIDPYI   43 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHH--HTTCCEEEEEEECSS
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHH--hCCceeEEEecccce
Confidence            34455544 4679999999999999999  899999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=83.65  E-value=0.2  Score=39.38  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI   88 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~   88 (294)
                      ..+..+-|.+|+||||+...|+. +.  ....+|.+-+-|.
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G-l~--~~~G~I~~~g~~i   62 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG-MT--SGKGSIQFAGQPL   62 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT-SC--CCSSEEEESSSBG
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC-CC--CCceEEEECCEEC
Confidence            33444458999999999999988 44  3445676655544

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.46  E-value=0.36  Score=38.69  Aligned_cols=49  Identities=14%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      .++..|..-+.......-.+-|--|+|||-++...+....  ..|+.|+++
T Consensus        90 ~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~--~~g~q~~~m  138 (264)
T d1gm5a3          90 RAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY--EAGFQTAFM  138 (264)
T ss_dssp             HHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH--HHTSCEEEE
T ss_pred             HHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHH--hcccceeEE
Confidence            4455566666655544556678999999999999999888  789999987

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=83.23  E-value=0.47  Score=39.34  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL   84 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli   84 (294)
                      ..++-|-=|+||||++..|+..+.  ..+ .+.++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~--~~~-~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS--GGS-PTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG--CSS-CEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc--cCC-CeEEE
Confidence            345556779999999999999998  544 66666

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.04  E-value=0.39  Score=37.55  Aligned_cols=39  Identities=33%  Similarity=0.458  Sum_probs=26.6

Q ss_pred             ChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         35 GIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        35 ~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      +...|++.+... ..-..++.|..|+||||+|..++..+-
T Consensus        20 ~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          20 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            344455444332 122346778999999999999999987

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.86  E-value=0.91  Score=36.00  Aligned_cols=42  Identities=21%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             ceEEEEEec-CCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSG-KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~-kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      +|-|.|++| -+|.||=..|+.++..|.  .+|++|..+.+||.-
T Consensus         2 ~kyifvtGGV~S~lGKGi~~asig~ll~--~~g~~v~~~K~DpYl   44 (272)
T d1vcoa2           2 RKYVFITGGVVSSLGKGILTSSLGALLR--ARGYRVTAIKIDPYV   44 (272)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECSS
T ss_pred             ceEEEEeCCcccccccHHHHHHHHHHHH--hCCCceeEEeeccce
Confidence            344555544 579999999999999999  999999999999875

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.85  E-value=1.8  Score=33.17  Aligned_cols=53  Identities=21%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE-EecCCchhhHHHHHHHHHHHH
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI-VVTTPQEVSLLDVRKEIDFCR  212 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl-iv~~~~~~s~~~~~~~l~~l~  212 (294)
                      +++||+|....+..........+....+...+ +..+|-..+..+....+..+.
T Consensus       125 ~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~  178 (230)
T d1z63a1         125 WKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLN  178 (230)
T ss_dssp             EEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHS
T ss_pred             ceEEEEEhhhcccccchhhhhhhhhhccceEEEEecchHHhHHHHHHHHHHhhC
Confidence            89999999854422111122222222455544 445777788888888888875

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.75  E-value=0.56  Score=35.73  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=27.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .++|+|+|.   .||||++..|+..|.  ..|+++..+.
T Consensus        12 ~~~I~ITGT---nGKTTt~~~l~~iL~--~~~~~~~~~~   45 (215)
T d1p3da3          12 RHGIAVAGT---HGKTTTTAMISMIYT--QAKLDPTFVN   45 (215)
T ss_dssp             SEEEEEESS---SCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHH--hCCCCceEee
Confidence            567777755   679999999999999  8898887653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.64  E-value=0.44  Score=33.97  Aligned_cols=19  Identities=37%  Similarity=0.651  Sum_probs=14.8

Q ss_pred             EEEEecCCCchHHHHHHHHH
Q psy11347         50 VLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA   69 (294)
                      |+++ |..||||||+...|.
T Consensus         3 I~li-G~~nvGKSSLln~l~   21 (166)
T d2qtvb1           3 LLFL-GLDNAGKTTLLHMLK   21 (166)
T ss_dssp             EEEE-CSTTSSHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHh
Confidence            4544 889999999998643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.54  E-value=0.55  Score=37.25  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=24.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL   86 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~   86 (294)
                      +-+ .+.|..|+|||+++..+|..+.     ..++.+++
T Consensus        39 ~gi-LL~GppGtGKT~l~~ala~~~~-----~~~~~i~~   71 (258)
T d1e32a2          39 RGI-LLYGPPGTGKTLIARAVANETG-----AFFFLING   71 (258)
T ss_dssp             CEE-EEECCTTSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred             cee-EEecCCCCCchHHHHHHHHHhC-----CeEEEEEc
Confidence            344 4558999999999998888665     35666654

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.44  E-value=0.99  Score=35.61  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=35.0

Q ss_pred             ceEEEEEec-CCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347         47 KHKVLVLSG-KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG   90 (294)
Q Consensus        47 ~~~i~v~s~-kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~   90 (294)
                      .|-|.|++| -+|.||=..|+.++..|.  .+|++|..+..||.-
T Consensus         3 tkyifvtGGV~S~lGKGi~~aSig~llk--~~g~~V~~~K~DPYl   45 (266)
T d1s1ma2           3 TNYIFVTGGVVSSLGKGIAAASLAAILE--ARGLNVTIMKLDPYI   45 (266)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECCS
T ss_pred             ceEEEEeCCcccccchHHHHHHHHHHHH--hCCceeEEEecccce
Confidence            344544443 579999999999999999  999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=82.31  E-value=0.45  Score=34.16  Aligned_cols=18  Identities=44%  Similarity=0.730  Sum_probs=14.3

Q ss_pred             EEEEecCCCchHHHHHHHH
Q psy11347         50 VLVLSGKGGVGKSTFTNLL   68 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~L   68 (294)
                      |+++ |..||||||+...+
T Consensus         8 I~iv-G~~~vGKSSLi~~~   25 (169)
T d1upta_           8 ILIL-GLDGAGKTTILYRL   25 (169)
T ss_dssp             EEEE-CSTTSSHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHH
Confidence            4555 78999999999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=82.14  E-value=0.42  Score=34.07  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=38.1

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc---CCCeeEEEecccc
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV---NIPIIGVVENMAT  227 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~  227 (294)
                      +.+.+.|+++...... ......  ..++.++++.+.. ..+...+......+...   ....+.++.|+.+
T Consensus        44 ~~~~~~d~~g~~~~~~-~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d  112 (160)
T d1r8sa_          44 ISFTVWDVGGQDKIRP-LWRHYF--QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD  112 (160)
T ss_dssp             CEEEEEECCCCGGGHH-HHHHHT--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             EEEEEecCCCcccchh-hhhhhh--ccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccc
Confidence            7889999986544322 223333  5678777776543 35666665555554322   2345677888865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.11  E-value=0.54  Score=37.50  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHh
Q psy11347         50 VLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      -.++.|..|+|||+++.++|..+.
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcchhHHHHHHHHhC
Confidence            355678999999999999998876

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.79  E-value=0.22  Score=39.09  Aligned_cols=25  Identities=36%  Similarity=0.642  Sum_probs=17.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347         48 HKVLVLSGKGGVGKSTFTNLLARVLA   73 (294)
Q Consensus        48 ~~i~v~s~kGGvGKTTia~~LA~~la   73 (294)
                      ++. ++.|.+||||||+...|...+.
T Consensus        98 ~~~-vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          98 KTT-VFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             SEE-EEEESHHHHHHHHHHHHCC---
T ss_pred             ceE-EEECCCCccHHHHHHhhccHhH
Confidence            444 4558999999999998865444

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.77  E-value=0.93  Score=32.72  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=54.5

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP  236 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~  236 (294)
                      +.+.+.|+++......+ ....+  ..+|.++++.+. +..++..+..+++.+.+.  +.+ +-+|.|++|..     ..
T Consensus        51 ~~~~i~d~~g~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-iilVgnK~Dl~-----~~  121 (164)
T d1z2aa1          51 VRLMLWDTAGQEEFDAI-TKAYY--RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLL-----DD  121 (164)
T ss_dssp             EEEEEECCTTGGGTTCC-CHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGG-----GG
T ss_pred             eeeeeeccCCccchhhh-hhhhh--ccCceEEEEEeccchhhhhhcccccccccccCCCce-EEEeeccCCcc-----cc
Confidence            67889998853321110 11222  578988888876 457888888888877643  444 55778999842     11


Q ss_pred             CccCCCCchhHHHHHhhcCCcee
Q psy11347        237 SEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      +.+.   .+.++++.+..++++.
T Consensus       122 ~~v~---~~~~~~~~~~~~~~~~  141 (164)
T d1z2aa1         122 SCIK---NEEAEGLAKRLKLRFY  141 (164)
T ss_dssp             CSSC---HHHHHHHHHHHTCEEE
T ss_pred             eeee---ehhhHHHHHHcCCEEE
Confidence            2222   3456777777777654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.65  E-value=0.42  Score=36.02  Aligned_cols=20  Identities=25%  Similarity=0.582  Sum_probs=15.9

Q ss_pred             EEEEEecCCCchHHHHHHHHH
Q psy11347         49 KVLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        49 ~i~v~s~kGGvGKTTia~~LA   69 (294)
                      +|+++ |.+|+||||+...|.
T Consensus         5 ~V~lv-G~~n~GKTSLln~l~   24 (209)
T d1nrjb_           5 SIIIA-GPQNSGKTSLLTLLT   24 (209)
T ss_dssp             EEEEE-CSTTSSHHHHHHHHH
T ss_pred             EEEEE-CCCCCCHHHHHHHHh
Confidence            45555 899999999988775

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=81.10  E-value=0.76  Score=33.43  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=17.7

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHH
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLL   68 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~L   68 (294)
                      .++..-.|+++ |..||||||+...|
T Consensus        11 ~~~k~~kI~vv-G~~~~GKSsLi~rl   35 (177)
T d1zj6a1          11 FNHQEHKVIIV-GLDNAGKTTILYQF   35 (177)
T ss_dssp             HTTSCEEEEEE-ESTTSSHHHHHHHH
T ss_pred             hCCCeEEEEEE-CCCCCCHHHHHHHH
Confidence            34444556666 88899999998754

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=81.01  E-value=0.84  Score=34.29  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD   85 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD   85 (294)
                      .++|+|+|.   .||||++..|+..|.  ..|.++.+..
T Consensus        11 ~~vI~VTGT---~GKTTt~~~l~~iL~--~~g~~~~~~~   44 (204)
T d2jfga3          11 APIVAITGS---NGKSTVTTLVGEMAK--AAGVNVGVGG   44 (204)
T ss_dssp             SCEEEEECS---SSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHH--hcCCCcccCC
Confidence            577888766   569999999999999  8898887653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=0.52  Score=34.28  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=52.7

Q ss_pred             ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc-CC--CeeEEEeccccccCCCCCC
Q psy11347        160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV-NI--PIIGVVENMATFVCPKCTK  235 (294)
Q Consensus       160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~-~~--~~~~vvvN~~~~~~~~~~~  235 (294)
                      |.+-+.|+++......+ ....+  ..+|.++++.+.+ ..++..+..++..+.+. +.  -.+.+|.|+.|..     .
T Consensus        52 ~~l~i~d~~g~~~~~~~-~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-----~  123 (167)
T d1xtqa1          52 YHLQLVDTAGQDEYSIF-PQTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-----M  123 (167)
T ss_dssp             EEEEEEECCCCCTTCCC-CGGGT--SSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG-----G
T ss_pred             EEeeecccccccccccc-cchhh--hhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccc-----c
Confidence            67778888743321110 01112  5789888887664 47888888877776432 21  1366888998842     1


Q ss_pred             CCccCCCCchhHHHHHhhcCCcee
Q psy11347        236 PSEIFPKDSGGAEKMCAELSVPFL  259 (294)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~g~~~l  259 (294)
                      .+.+.   .+.++++.+.++.++.
T Consensus       124 ~r~v~---~~~~~~~a~~~~~~~~  144 (167)
T d1xtqa1         124 ERVIS---YEEGKALAESWNAAFL  144 (167)
T ss_dssp             GCCSC---HHHHHHHHHHHTCEEE
T ss_pred             ccchh---HHHHHHHHHHcCCEEE
Confidence            22222   3456777777777654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=80.79  E-value=0.39  Score=38.56  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347        159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE  198 (294)
Q Consensus       159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~  198 (294)
                      .|++|+||..-.++...+..+..+..... .++++.++..
T Consensus       206 ~~~~i~vDE~QD~~~~~~~~l~~~~~~~~-~~~~~GD~~Q  244 (306)
T d1uaaa1         206 KIRYLLVDEYQDTNTSQYELVKLLVGSRA-RFTVVGDDDQ  244 (306)
T ss_dssp             TCSEEEESCGGGCBHHHHHHHHHHHTTTC-CEEEECCGGG
T ss_pred             HhhHHHHHHHHHhhHHHHhhhhhcccCCC-cceEeecCcc
Confidence            49999999998888777777766654333 3566666654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.60  E-value=0.5  Score=34.81  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=15.3

Q ss_pred             EEEEecCCCchHHHHHHHHH
Q psy11347         50 VLVLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        50 i~v~s~kGGvGKTTia~~LA   69 (294)
                      |+++ |..|+||||+...|.
T Consensus         3 I~lv-G~~nvGKSsLin~l~   21 (184)
T d2cxxa1           3 IIFA-GRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEE-EBTTSSHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHh
Confidence            4555 889999999998873

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.5  Score=34.64  Aligned_cols=18  Identities=44%  Similarity=0.613  Sum_probs=15.0

Q ss_pred             EEecCCCchHHHHHHHHH
Q psy11347         52 VLSGKGGVGKSTFTNLLA   69 (294)
Q Consensus        52 v~s~kGGvGKTTia~~LA   69 (294)
                      .+-|..||||||+...|-
T Consensus         9 ~iiG~~nvGKSSLin~L~   26 (179)
T d1egaa1           9 AIVGRPNVGKSTLLNKLL   26 (179)
T ss_dssp             EEECSSSSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            345899999999998884

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.36  E-value=0.64  Score=33.40  Aligned_cols=40  Identities=28%  Similarity=0.511  Sum_probs=32.2

Q ss_pred             hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      ++..++.|+|+++-|-.|.     .||..|.  +.|+.|.++|.+..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~-----~la~~L~--~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGG-----LFARYLR--ASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHH-----HHHHHHH--TTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHH-----HHHHHHH--HcCCCcEecccccc
Confidence            4556788999986777776     4888899  89999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=80.32  E-value=0.54  Score=34.76  Aligned_cols=43  Identities=9%  Similarity=-0.078  Sum_probs=32.1

Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347        185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF  228 (294)
Q Consensus       185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~  228 (294)
                      ..+|.++++++.+.........++..+...+.+. -+|+|+++.
T Consensus        90 ~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~-i~v~nK~D~  132 (186)
T d1mkya2          90 EKADVVVIVLDATQGITRQDQRMAGLMERRGRAS-VVVFNKWDL  132 (186)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGG
T ss_pred             hcCCEEEEeecccccchhhHHHHHHHHHHcCCce-eeeccchhh
Confidence            4678888888887665666677777777777664 577899884

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.21  E-value=0.67  Score=36.08  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347         47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC   89 (294)
Q Consensus        47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~   89 (294)
                      +|++.|+++.+|.|+     .+|..|+  +.|.+|.++|.+..
T Consensus         2 gK~vlITGas~GIG~-----a~a~~l~--~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGS-----RCVQAFR--ARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHH--TTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHH--HCCCEEEEEeCCcc
Confidence            688999999999998     5678899  89999999987653