Psyllid ID: psy11382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MLNRADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNAV
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEccEEEEEEccccccEEEEcccccEEEEcccccccccEEEEEccccEEEEEEccHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccccHHcEEEEEEEEEcccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcEEEEEEccccccHHHHHHHHHHHHHHcccccccccEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccccccEcHHHHHHHHHHHHHccccccccccHHHHHHccHHHHcccHHHHHcccccccEcccccccccccEEEccccHHHHEHHHHEHEEcccccccccccc
Coil and Loop (DISEMBL)
mlnradlrkpfvgtlhlTTTALIFQDTDCKKETWILLMHIASiergplstlgspliircktflsvtfviprereCYDIYVTLqklsrpepkklrrrrepypeppvckssviptrpqRLLKIHIEELYCFtytsttespksygwdffSLEQEFKrmqvpndewcltnlnknyELVDILRGGTsliekdwlsfghkftdrcghlagdprevsPVFVQFLECSWqlsvqfpqafefNEIFLLTLQDHvtscqfgtfvgncekdrldlrlsentYSLWGYMANRMEdyinplyspdahpdfirpdlspqnirytpfltvEKNYDKLQKQNAV
Flexible Loop (DISEMBL)
mlnradlrkpfvgtlhltttalifqDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYvtlqklsrpepkklrrrrepypeppvckssviptrpqRLLKIHIEELYCFTYTsttespksyGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLtveknydklqkqnav
Low Complexity Region (SEG)
MLNRADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSrpepkklrrrrepypeppVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNAV
Disordered region (IsUnstruct)
********KPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK**************************IPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEK***********
Disordered Region (DISOPRED)
MLN*****KPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPL**LGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTE*PKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKN**********
Disordered Region (DISEMBL)
MLNRADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRP****************VCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNAV
Disordered Region (DISPRO)
****ADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYD********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNRADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q8VE11	617	Myotubularin-related prot	yes	N/A	0.405	0.215	0.574	1e-43
Q9Y217	621	Myotubularin-related prot	yes	N/A	0.256	0.135	0.610	3e-42
Q96EF0	704	Myotubularin-related prot	no	N/A	0.298	0.139	0.556	5e-40
Q6TEL0	632	Myotubularin-related prot	yes	N/A	0.298	0.155	0.526	1e-39
Q5F452	629	Myotubularin-related prot	no	N/A	0.237	0.124	0.584	2e-36
Q5R6F6	660	Myotubularin-related prot	no	N/A	0.246	0.122	0.568	2e-35
Q9Y216	660	Myotubularin-related prot	no	N/A	0.246	0.122	0.568	2e-35
Q9Z2C9	660	Myotubularin-related prot	no	N/A	0.246	0.122	0.577	6e-35
A0JMK5	620	Myotubularin-related prot	no	N/A	0.378	0.2	0.465	8e-30
Q9Z2D1	643	Myotubularin-related prot	no	N/A	0.341	0.174	0.516	2e-29

>sp|Q8VE11|MTMR6_MOUSE Myotubularin-related protein 6 OS=Mus musculus GN=Mtmr6 PE=1 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G   LIEKDW+SFGHKF++RCGHL GDPREVSPVF QFLEC W L+ QFPQAFEFNE 
Sbjct: 361 MKGFMVLIEKDWISFGHKFSERCGHLDGDPREVSPVFTQFLECVWHLTQQFPQAFEFNEA 420

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHP- 295
           FLL + +H+ SCQFG F+GNC+K+R +LRL E TYSLW ++ +  + Y+NPLYS  +   
Sbjct: 421 FLLQIHEHIHSCQFGNFLGNCQKEREELRLKEKTYSLWPFLLDDKKKYLNPLYSSKSQRL 480

Query: 296 DFIRPDLSPQNIRY 309
             + P+ +  N ++
Sbjct: 481 TVLEPNTASFNFKF 494

Phosphatase that acts on lipids with a phosphoinositol headgroup. Acts as a negative regulator of KCNN4/KCa3.1 channel activity in CD4+ T-cells possibly by decreasing intracellular levels of phosphatidylinositol 3 phosphatase. Negatively regulates proliferation of reactivated CD4+ T-cells.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

>sp|Q9Y217|MTMR6_HUMAN Myotubularin-related protein 6 OS=Homo sapiens GN=MTMR6 PE=1 SV=3

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 94/118 (79%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G   LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E 
Sbjct: 361 IKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEA 420

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAH 294
           FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++    + Y+NPLYS ++H
Sbjct: 421 FLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESH 478

Phosphatase that acts on lipids with a phosphoinositol headgroup. Acts as a negative regulator of KCNN4/KCa3.1 channel activity in CD4+ T-cells possibly by decreasing intracellular levels of phosphatidylinositol 3 phosphatase. Negatively regulates proliferation of reactivated CD4+ T-cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q96EF0|MTMR8_HUMAN Myotubularin-related protein 8 OS=Homo sapiens GN=MTMR8 PE=1 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 93/133 (69%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
            +G   LIEK+W+S GHKF+ RCGHL GD +EVSP+F QFL+C WQL  QFP AFEFNE 
Sbjct: 363 FKGLMILIEKEWISMGHKFSQRCGHLDGDSKEVSPIFTQFLDCIWQLMEQFPCAFEFNEN 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL + DHV SCQFG F+GNC+KDR DLR+ E T+S+W ++  R  D+ NPLY       
Sbjct: 423 FLLEIHDHVFSCQFGNFLGNCQKDREDLRVYEKTHSVWPFLVQRKPDFRNPLYKGFTMYG 482

Query: 297 FIRPDLSPQNIRY 309
            + P   P NI++
Sbjct: 483 VLNPSTVPYNIQF 495

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q6TEL0|MTMR8_DANRE Myotubularin-related protein 8 OS=Danio rerio GN=mtmr8 PE=2 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 92/133 (69%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G   LIEK+W+SFGHKF+ RCGHL  DP+E SPVF QFLEC WQLS QFP  FEFNE 
Sbjct: 363 IKGLMVLIEKEWISFGHKFSHRCGHLDSDPKEASPVFTQFLECVWQLSQQFPCVFEFNEH 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           +L+ + D V +CQ+G F+GNC+K+RLD+RL E T+SLW ++      Y NPLY       
Sbjct: 423 YLIEIHDQVYACQYGNFIGNCQKERLDMRLHEKTFSLWPHLLENQHQYRNPLYRRSLEST 482

Query: 297 FIRPDLSPQNIRY 309
            +RP   P + ++
Sbjct: 483 VLRPSTLPLHFKF 495

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Danio rerio (taxid: 7955)

>sp|Q5F452|MTMR8_CHICK Myotubularin-related protein 8 OS=Gallus gallus GN=MTMR8 PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 84/113 (74%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
            +G   LIEK+W++ GHKF+ RCGHL GDP+EVSPVF QF+EC WQL  QFP  FEFNE 
Sbjct: 363 FKGFMVLIEKEWIAMGHKFSHRCGHLDGDPKEVSPVFTQFIECVWQLMQQFPCTFEFNEH 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLY 289
           FLL + DHV SCQFG F+G C K+R DL++ E T+SLW ++  + ++  NPLY
Sbjct: 423 FLLEIHDHVYSCQFGNFLGTCHKEREDLKIFEKTHSLWPFLLQKKQELRNPLY 475

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q5R6F6|MTMR7_PONAB Myotubularin-related protein 7 OS=Pongo abelii GN=MTMR7 PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 85/116 (73%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           L+G   LIEKDW+SFGHKF  R G+L GDP+E+SPV  QF+EC WQL  QFP AFEFNE 
Sbjct: 363 LKGFMVLIEKDWISFGHKFNHRYGNLDGDPKEISPVIDQFIECVWQLMEQFPCAFEFNER 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPD 292
           FL+ +Q H+ SCQFG F+ N +K+R +L++ E TYSLW ++     DY+NPL+  D
Sbjct: 423 FLIHIQHHIYSCQFGNFLCNSQKERQELKIQERTYSLWAHLWKNRADYLNPLFRAD 478

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9Y216|MTMR7_HUMAN Myotubularin-related protein 7 OS=Homo sapiens GN=MTMR7 PE=1 SV=3

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 85/116 (73%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           L+G   LIEKDW+SFGHKF  R G+L GDP+E+SPV  QF+EC WQL  QFP AFEFNE 
Sbjct: 363 LKGFMVLIEKDWISFGHKFNHRYGNLDGDPKEISPVIDQFIECVWQLMEQFPCAFEFNER 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPD 292
           FL+ +Q H+ SCQFG F+ N +K+R +L++ E TYSLW ++     DY+NPL+  D
Sbjct: 423 FLIHIQHHIYSCQFGNFLCNSQKERRELKIQERTYSLWAHLWKNRADYLNPLFRAD 478

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9Z2C9|MTMR7_MOUSE Myotubularin-related protein 7 OS=Mus musculus GN=Mtmr7 PE=2 SV=2

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 84/116 (72%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           L+G   LIEKDW+SFGHKF  R G+L GDP+E+SPV  QF+EC WQL+ QFP AFEFNE 
Sbjct: 363 LKGFMVLIEKDWISFGHKFNHRYGNLDGDPKEISPVIDQFIECVWQLTEQFPCAFEFNER 422

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPD 292
           FL  +Q HV SCQFG F+ N +K+R +L++ E TYSLW  +     DY+NPL+  D
Sbjct: 423 FLTHIQHHVYSCQFGNFLCNSQKERRELKIQERTYSLWSNLWKNRADYLNPLFRAD 478

Phosphatase that acts on lipids with a phosphoinositol headgroup.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|A0JMK5|MTMR2_DANRE Myotubularin-related protein 2 OS=Danio rerio GN=mtmr2 PE=2 SV=2

 Score =  131 bits (329), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 89/129 (68%), Gaps = 5/129 (3%)

Query: 163 CLTNLNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV--SPVFVQFLECS 220
            L  L+ +Y  +   RG   L+EK+WLSFGH+F  R GH   +  +V  SP+F+QF++C 
Sbjct: 407 ALIMLDSHYRTI---RGFQILVEKEWLSFGHRFQQRVGHGDKNHTDVDRSPIFLQFIDCV 463

Query: 221 WQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANR 280
           WQ++ QFP AFEFNE FL+T+ DH+ SC FGTF+ N E+ RL   + + T SLW ++ ++
Sbjct: 464 WQMTRQFPAAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRLKEEIPKRTVSLWSFVNSQ 523

Query: 281 MEDYINPLY 289
           +E+++NPLY
Sbjct: 524 LEEFVNPLY 532

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9Z2D1|MTMR2_MOUSE Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 6/118 (5%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV----SPVFVQFLECSWQLSVQFPQAFE 232
           +RG   L+EK+WLSFGH+F  R GH  GD        SPVF+QF++C WQ++ QFP AFE
Sbjct: 442 IRGFEVLVEKEWLSFGHRFQLRVGH--GDKNHADADRSPVFLQFIDCVWQMTRQFPTAFE 499

Query: 233 FNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYS 290
           FNE FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY 
Sbjct: 500 FNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKKTVSLWSYINSQLEDFTNPLYG 557

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate. Binds phosphatidylinositol 4-phosphate, hosphatidylinositol 5-phosphate, phosphatidylinositol 3,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
158294021	691	AGAP005341-PA [Anopheles gambiae str. PE	0.402	0.191	0.669	1e-49
357604489	711	hypothetical protein KGM_12054 [Danaus p	0.304	0.140	0.661	2e-49
158294023	755	AGAP005341-PB [Anopheles gambiae str. PE	0.402	0.174	0.669	2e-49
157133976	748	myotubularin [Aedes aegypti] gi|10888147	0.402	0.176	0.676	5e-49
312372589	566	hypothetical protein AND_19940 [Anophele	0.402	0.233	0.661	1e-48
170027582	749	myotubularin [Culex quinquefasciatus] gi	0.402	0.176	0.661	4e-48
195347072	689	GM15548 [Drosophila sechellia] gi|194135	0.402	0.191	0.646	7e-48
24659414	689	CG3530, isoform B [Drosophila melanogast	0.402	0.191	0.646	8e-48
161077432	639	CG3530, isoform C [Drosophila melanogast	0.402	0.206	0.646	1e-47
24659421	761	CG3530, isoform A [Drosophila melanogast	0.402	0.173	0.646	1e-47

>gi|158294021|ref|XP_001688643.1| AGAP005341-PA [Anopheles gambiae str. PEST] gi|157015371|gb|EDO63649.1| AGAP005341-PA [Anopheles gambiae str. PEST]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF+DRCGH+  DP+EVSPVF Q LEC+WQL  Q   AFEFNE 
Sbjct: 359 IKGFQALIEKDWLAFGHKFSDRCGHIQNDPKEVSPVFTQLLECTWQLMQQRNDAFEFNER 418

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQ+GTFVGNCEKDRLDLRL+E T+SLWGYM+N + +YINPLY P+   +
Sbjct: 419 FLLILHDHVMSCQYGTFVGNCEKDRLDLRLAEKTFSLWGYMSNHLNEYINPLYRPEM-DE 477

Query: 297 FIRPDLSPQNIRY 309
            I+P+L+PQNI++
Sbjct: 478 TIKPNLAPQNIKF 490

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604489|gb|EHJ64211.1| hypothetical protein KGM_12054 [Danaus plexippus]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 109/133 (81%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           + G  +LIEKDWLSFGHKFT RCGH+A D RE SPVF Q L+C+WQL  Q P+AF+FNE 
Sbjct: 346 INGYQALIEKDWLSFGHKFTARCGHVACDSRERSPVFTQLLDCTWQLLRQAPEAFQFNER 405

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLLTL DH  +CQ+GTF+GNC+KDR DLRLSE T+SLWGYMA+ + +Y NPLY+P A+PD
Sbjct: 406 FLLTLHDHAHACQYGTFIGNCQKDRRDLRLSERTFSLWGYMASHLNEYKNPLYNPKAYPD 465

Query: 297 FIRPDLSPQNIRY 309
            ++PDLS Q+IR+
Sbjct: 466 ILKPDLSAQSIRF 478

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294023|ref|XP_315353.3| AGAP005341-PB [Anopheles gambiae str. PEST] gi|157015372|gb|EAA11795.3| AGAP005341-PB [Anopheles gambiae str. PEST]

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF+DRCGH+  DP+EVSPVF Q LEC+WQL  Q   AFEFNE 
Sbjct: 423 IKGFQALIEKDWLAFGHKFSDRCGHIQNDPKEVSPVFTQLLECTWQLMQQRNDAFEFNER 482

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQ+GTFVGNCEKDRLDLRL+E T+SLWGYM+N + +YINPLY P+   +
Sbjct: 483 FLLILHDHVMSCQYGTFVGNCEKDRLDLRLAEKTFSLWGYMSNHLNEYINPLYRPEMD-E 541

Query: 297 FIRPDLSPQNIRY 309
            I+P+L+PQNI++
Sbjct: 542 TIKPNLAPQNIKF 554

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133976|ref|XP_001663101.1| myotubularin [Aedes aegypti] gi|108881470|gb|EAT45695.1| AAEL003083-PA [Aedes aegypti]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF+DRCGH+  DP+EVSPVF Q L+C+WQL  Q   AFEFNE 
Sbjct: 420 IKGFQALIEKDWLAFGHKFSDRCGHIQNDPKEVSPVFTQLLDCTWQLMQQRNDAFEFNER 479

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDLRLSE T+SLWGYM+N + +YINPLY P+   +
Sbjct: 480 FLLILHDHVMSCQFGTFVGNCEKDRLDLRLSEKTFSLWGYMSNHLNEYINPLYRPEMD-E 538

Query: 297 FIRPDLSPQNIRY 309
            IRP+L+PQ I++
Sbjct: 539 TIRPNLAPQCIKF 551

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372589|gb|EFR20517.1| hypothetical protein AND_19940 [Anopheles darlingi]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF+DRCGH+  DP+EVSPVF Q L+CSWQL  Q   AFEFNE 
Sbjct: 66  IKGFQALIEKDWLAFGHKFSDRCGHIQNDPKEVSPVFTQLLDCSWQLMQQRNDAFEFNER 125

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQ+GTFVGNCEKDRLDLRL+E T+SLWG+M+N + +YINPLY P+   +
Sbjct: 126 FLLILHDHVMSCQYGTFVGNCEKDRLDLRLAEKTFSLWGFMSNHLNEYINPLYRPEM-DE 184

Query: 297 FIRPDLSPQNIRY 309
            I+P+L+PQNI++
Sbjct: 185 TIKPNLAPQNIKF 197

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170027582|ref|XP_001841676.1| myotubularin [Culex quinquefasciatus] gi|167862246|gb|EDS25629.1| myotubularin [Culex quinquefasciatus]

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF+DRCGH+  DP+EVSPVF Q L+C+WQL  Q   AFEFNE 
Sbjct: 422 IKGFQALIEKDWLAFGHKFSDRCGHIQNDPKEVSPVFTQLLDCTWQLMQQRNDAFEFNER 481

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDLRL+E T+SLWG+M+N + +YINPLY P+   +
Sbjct: 482 FLLILHDHVMSCQFGTFVGNCEKDRLDLRLAEKTFSLWGFMSNHLNEYINPLYRPEMD-E 540

Query: 297 FIRPDLSPQNIRY 309
            IRP+L+PQ I++
Sbjct: 541 TIRPNLAPQCIKF 553

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347072|ref|XP_002040078.1| GM15548 [Drosophila sechellia] gi|194135427|gb|EDW56943.1| GM15548 [Drosophila sechellia]

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF++RCGH+  D REVSP+F QFL+C+WQL  Q  +AFEFNE 
Sbjct: 359 IKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNER 418

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDL+L+E T+SLWGYMAN + +YINPLY P+   +
Sbjct: 419 FLLILHDHVHSCQFGTFVGNCEKDRLDLKLAERTFSLWGYMANHLNEYINPLYKPNV-DE 477

Query: 297 FIRPDLSPQNIRY 309
            I+ +L+PQ I++
Sbjct: 478 AIKANLAPQCIKF 490

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24659414|ref|NP_611791.2| CG3530, isoform B [Drosophila melanogaster] gi|21626619|gb|AAF46997.2| CG3530, isoform B [Drosophila melanogaster] gi|60677799|gb|AAX33406.1| RE56001p [Drosophila melanogaster] gi|220952212|gb|ACL88649.1| CG3530-PB [synthetic construct]

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF++RCGH+  D REVSP+F QFL+C+WQL  Q  +AFEFNE 
Sbjct: 359 IKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNER 418

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDL+L+E T+SLWGYMAN + +YINPLY P+   +
Sbjct: 419 FLLILHDHVHSCQFGTFVGNCEKDRLDLKLAERTFSLWGYMANHLNEYINPLYKPNV-DE 477

Query: 297 FIRPDLSPQNIRY 309
            I+ +L+PQ I++
Sbjct: 478 AIKANLAPQCIKF 490

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077432|ref|NP_001097433.1| CG3530, isoform C [Drosophila melanogaster] gi|5901814|gb|AAD55415.1|AF181629_1 BcDNA.GH04637 [Drosophila melanogaster] gi|157400472|gb|ABV53893.1| CG3530, isoform C [Drosophila melanogaster]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF++RCGH+  D REVSP+F QFL+C+WQL  Q  +AFEFNE 
Sbjct: 309 IKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNER 368

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDL+L+E T+SLWGYMAN + +YINPLY P+   +
Sbjct: 369 FLLILHDHVHSCQFGTFVGNCEKDRLDLKLAERTFSLWGYMANHLNEYINPLYKPNV-DE 427

Query: 297 FIRPDLSPQNIRY 309
            I+ +L+PQ I++
Sbjct: 428 AIKANLAPQCIKF 440

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24659421|ref|NP_726322.1| CG3530, isoform A [Drosophila melanogaster] gi|21626620|gb|AAF46998.2| CG3530, isoform A [Drosophila melanogaster] gi|27820075|gb|AAO25064.1| GH09546p [Drosophila melanogaster]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G  +LIEKDWL+FGHKF++RCGH+  D REVSP+F QFL+C+WQL  Q  +AFEFNE 
Sbjct: 431 IKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNER 490

Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
           FLL L DHV SCQFGTFVGNCEKDRLDL+L+E T+SLWGYMAN + +YINPLY P+   +
Sbjct: 491 FLLILHDHVHSCQFGTFVGNCEKDRLDLKLAERTFSLWGYMANHLNEYINPLYKPNVD-E 549

Query: 297 FIRPDLSPQNIRY 309
            I+ +L+PQ I++
Sbjct: 550 AIKANLAPQCIKF 562

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
FB|FBgn0028497	761	CG3530 [Drosophila melanogaste	0.423	0.182	0.622	3.6e-90
UNIPROTKB|E1BJH8	610	MTMR6 "Uncharacterized protein	0.396	0.213	0.571	3.3e-74
UNIPROTKB|Q9Y217	621	MTMR6 "Myotubularin-related pr	0.405	0.214	0.552	1.9e-73
UNIPROTKB|E2RLT3	621	MTMR6 "Uncharacterized protein	0.402	0.212	0.570	2.9e-73
MGI|MGI:2145637	617	Mtmr6 "myotubularin related pr	0.405	0.215	0.574	9.8e-73
UNIPROTKB|E1C2Q9	622	MTMR6 "Uncharacterized protein	0.405	0.213	0.540	1.2e-72
RGD|1305378	617	Mtmr6 "myotubularin related pr	0.405	0.215	0.567	6.8e-72
UNIPROTKB|I3LK82	506	I3LK82 "Uncharacterized protei	0.411	0.266	0.570	4.1e-70
ZFIN|ZDB-GENE-030131-5557	643	mtmr6 "myotubularin related pr	0.399	0.203	0.541	2.8e-68
UNIPROTKB|I3LJL9	687	LOC100514746 "Uncharacterized	0.448	0.213	0.536	4.2e-68

FB|FBgn0028497 CG3530 [Drosophila melanogaster (taxid:7227)]

 Score = 491 (177.9 bits), Expect = 3.6e-90, Sum P(3) = 3.6e-90
 Identities = 89/143 (62%), Positives = 112/143 (78%)

Query:   167 LNKNYELVDILRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQ 226
             LN  Y  +   +G  +LIEKDWL+FGHKF++RCGH+  D REVSP+F QFL+C+WQL  Q
Sbjct:   424 LNPYYRTI---KGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQ 480

Query:   227 FPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYIN 286
               +AFEFNE FLL L DHV SCQFGTFVGNCEKDRLDL+L+E T+SLWGYMAN + +YIN
Sbjct:   481 RSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAERTFSLWGYMANHLNEYIN 540

Query:   287 PLYSPDAHPDFIRPDLSPQNIRY 309
             PLY P+   + I+ +L+PQ I++
Sbjct:   541 PLYKPNVD-EAIKANLAPQCIKF 562

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=ISS;NAS

GO:0006470 "protein dephosphorylation" evidence=NAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016311 "dephosphorylation" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IMP

UNIPROTKB|E1BJH8 MTMR6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
 Identities = 76/133 (57%), Positives = 99/133 (74%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             +RG   LIEKDW+SFGHKF++RCGHL GDP+EVSPVF QFLEC W L+ QFPQAFEFNE 
Sbjct:   361 IRGFMVLIEKDWISFGHKFSERCGHLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFNEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
             FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++ +  + Y+NPLYS  +   
Sbjct:   421 FLLQIHEHIHSCQFGNFIGNCQKEREELKLKEKTYSLWPFLLDDQKKYLNPLYSSQSQKS 480

Query:   297 FIRPDLSPQNIRY 309
              +   L P  + +
Sbjct:   481 AV---LEPNTVSF 490

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|Q9Y217 MTMR6 "Myotubularin-related protein 6" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
 Identities = 74/134 (55%), Positives = 100/134 (74%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E 
Sbjct:   361 IKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHP- 295
             FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++    + Y+NPLYS ++H  
Sbjct:   421 FLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRF 480

Query:   296 DFIRPDLSPQNIRY 309
               + P+    N ++
Sbjct:   481 TVLEPNTVSFNFKF 494

GO:0005635 "nuclear envelope" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=NAS

GO:0006470 "protein dephosphorylation" evidence=NAS

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=NAS

UNIPROTKB|E2RLT3 MTMR6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 441 (160.3 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
 Identities = 77/135 (57%), Positives = 102/135 (75%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF++RCGHL GDP+EVSPVF QFLEC W L+ QFPQAFEFNE 
Sbjct:   361 IKGFMVLIEKDWISFGHKFSERCGHLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFNEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
             FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++ +  + Y+NPLYS  + P 
Sbjct:   421 FLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLDDQKKYLNPLYSSKS-PK 479

Query:   297 F--IRPDLSPQNIRY 309
             F  + P+    N ++
Sbjct:   480 FAVLEPNTVSFNFKF 494

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

MGI|MGI:2145637 Mtmr6 "myotubularin related protein 6" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
 Identities = 77/134 (57%), Positives = 101/134 (75%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF++RCGHL GDPREVSPVF QFLEC W L+ QFPQAFEFNE 
Sbjct:   361 MKGFMVLIEKDWISFGHKFSERCGHLDGDPREVSPVFTQFLECVWHLTQQFPQAFEFNEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHP- 295
             FLL + +H+ SCQFG F+GNC+K+R +LRL E TYSLW ++ +  + Y+NPLYS  +   
Sbjct:   421 FLLQIHEHIHSCQFGNFLGNCQKEREELRLKEKTYSLWPFLLDDKKKYLNPLYSSKSQRL 480

Query:   296 DFIRPDLSPQNIRY 309
               + P+ +  N ++
Sbjct:   481 TVLEPNTASFNFKF 494

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015269 "calcium-activated potassium channel activity" evidence=ISO

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

UNIPROTKB|E1C2Q9 MTMR6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 419 (152.6 bits), Expect = 1.2e-72, Sum P(3) = 1.2e-72
 Identities = 73/135 (54%), Positives = 98/135 (72%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF+DRC  L GDP+E+SPVF QFLE  W L+ QFPQAFE+NE 
Sbjct:   361 IKGFMVLIEKDWISFGHKFSDRCCQLDGDPKEISPVFTQFLESVWNLTEQFPQAFEYNEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
             FLL + +HV SCQFG F+GNC+K+R +L+L E TYSLW ++ +  + Y NPLY+P   P+
Sbjct:   421 FLLQIHEHVHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLDEQKKYQNPLYNPSFSPN 480

Query:   297 F--IRPDLSPQNIRY 309
                + P+    N ++
Sbjct:   481 LTLLEPNTVSFNFKF 495

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

RGD|1305378 Mtmr6 "myotubularin related protein 6" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 6.8e-72, Sum P(3) = 6.8e-72
 Identities = 76/134 (56%), Positives = 100/134 (74%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF++RCGHL GDP+EVSPVF QFLEC W L+ QFPQAFEFNE 
Sbjct:   361 MKGFMVLIEKDWISFGHKFSERCGHLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFNEA 420

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHP- 295
             FLL + +H+ SCQFG F+GNC+K+R +LRL E TYSLW ++    + Y+NPLYS  +   
Sbjct:   421 FLLQIHEHIHSCQFGNFLGNCQKEREELRLKEKTYSLWPFLLADKKKYLNPLYSSKSQRL 480

Query:   296 DFIRPDLSPQNIRY 309
               + P+ +  N ++
Sbjct:   481 TVLEPNTASFNFKF 494

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0015269 "calcium-activated potassium channel activity" evidence=ISO

UNIPROTKB|I3LK82 I3LK82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 433 (157.5 bits), Expect = 4.1e-70, Sum P(3) = 4.1e-70
 Identities = 77/135 (57%), Positives = 95/135 (70%)

Query:   178 RGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIF 237
             +G   LIEK+W+S GHKF+ RCGHL GDP+EVSP+F QFL+C WQL  QFP AFEFNE F
Sbjct:   364 KGLMILIEKEWISMGHKFSQRCGHLDGDPKEVSPIFTQFLDCIWQLMEQFPCAFEFNENF 423

Query:   238 LLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDF 297
             LL + DHV SCQFG F+GNC+KDR D+R+ E T+SLW ++  R  D+ NPLY        
Sbjct:   424 LLEIHDHVFSCQFGNFLGNCQKDREDMRIYEKTHSLWPFLVQRKPDFRNPLYKGFTVYGV 483

Query:   298 IRPDLSPQNIRYTPF 312
             + P   P NI+Y  F
Sbjct:   484 LNPSTVPYNIQYKNF 498

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-5557 mtmr6 "myotubularin related protein 6" [Danio rerio (taxid:7955)]

 Score = 411 (149.7 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
 Identities = 72/133 (54%), Positives = 95/133 (71%)

Query:   177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
             ++G   LIEKDW+SFGHKF DRC  L  DP+EVSP+F QFLEC WQL+ QFPQAFEF+E 
Sbjct:   362 IKGFMVLIEKDWISFGHKFADRCDQLDPDPKEVSPIFTQFLECVWQLTEQFPQAFEFSEW 421

Query:   237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD 296
             FL+ + +H+ SCQFG F+GN ++ R DL+L E TYSLW ++ +  ++Y+NP+YSP     
Sbjct:   422 FLIQIHEHIHSCQFGNFLGNSQRQREDLQLKERTYSLWAHLLSEKQNYLNPVYSPSFAES 481

Query:   297 FIRPDLSPQNIRY 309
               +P L P    Y
Sbjct:   482 --QPVLEPSTQAY 492

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|I3LJL9 LOC100514746 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 428 (155.7 bits), Expect = 4.2e-68, Sum P(3) = 4.2e-68
 Identities = 81/151 (53%), Positives = 104/151 (68%)

Query:   178 RGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIF 237
             +G   LIEK+W+S GHKF+ RCGHL GDP+EVSP+F QFL+C WQL  QFP AFEFNE F
Sbjct:   365 KGLMILIEKEWISMGHKFSQRCGHLDGDPKEVSPIFTQFLDCIWQLMEQFPCAFEFNENF 424

Query:   238 LLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDF 297
             LL + DHV SCQFG F+GNC+KDR D+R+ E T+SLW ++  R  D+ NPLY        
Sbjct:   425 LLEIHDHVFSCQFGNFLGNCQKDREDMRIYEKTHSLWPFLVQRKPDFRNPLYKGFTVYGV 484

Query:   298 IRPDLSPQNIRYTPFLTVEKNYDK-LQ-KQN 326
             + P   P NI++  +  +   +DK LQ KQ+
Sbjct:   485 LNPSTVPYNIQF--WCGMYNRFDKGLQPKQS 513

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VE11	MTMR6_MOUSE	3, ., 1, ., 3, ., -	0.5746	0.4054	0.2155	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	328
cd13210	98	cd13210, PH-GRAM_MTMR6-like, Myotubularian (MTM) r	3e-48
cd13345	105	cd13345, PH-GRAM_MTMR8, Myotubularian (MTM) relate	1e-28
cd13343	104	cd13343, PH-GRAM_MTMR6, Myotubularian (MTM) relate	3e-26
cd13344	107	cd13344, PH-GRAM_MTMR7, Myotubularian (MTM) relate	3e-25
cd13211	159	cd13211, PH-GRAM_MTMR9, Myotubularian (MTM) relate	1e-12
pfam13849	55	pfam13849, Y_phosphatase_m, Myotubularin Y_phospha	2e-07
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	4e-05

>gnl|CDD|241364 cd13210, PH-GRAM_MTMR6-like, Myotubularian (MTM) related (MTMR) 7 and 8 proteins Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  156 bits (397), Expect = 3e-48
 Identities = 59/88 (67%), Positives = 72/88 (81%)

Query: 1  MLNRADLRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCK 60
          +L+R + +K  VGTL+LT T LIF D   KKETWIL MHIAS+E+ PL+T GSPL+IRCK
Sbjct: 11 LLDRFNSKKHSVGTLYLTATHLIFVDPSGKKETWILHMHIASVEKLPLTTGGSPLVIRCK 70

Query: 61 TFLSVTFVIPRERECYDIYVTLQKLSRP 88
          TFL VTFVIP+ER+C+DIY TL KLS+P
Sbjct: 71 TFLVVTFVIPKERDCHDIYTTLLKLSKP 98

MTMR6, MTMR7, and MRMR8 are all member of the myotubularin dual specificity protein phosphatase gene family. They bind to phosphoinositide lipids through its PH-GRAM domain. These proteins also interact with each other as well as MTMR9. They contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The lipid-binding FYVE domain has been shown to bind phosphotidylinositol-3-phosphate. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 98

>gnl|CDD|241499 cd13345, PH-GRAM_MTMR8, Myotubularian (MTM) related 8 protein (MTMR8) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  106 bits (266), Expect = 1e-28
 Identities = 41/91 (45%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 1   MLNRADLRKPFVGTLHLTTTALIFQDT--DCKKETWILLMHIASIERGPLSTLGSPLIIR 58
           +L+R   +KP  GTL+LT T LI+ +   + +KETWI   HIA++E+ PL++LG PL++R
Sbjct: 14  LLDRYVNKKPANGTLYLTATHLIYVEASGEARKETWIAHHHIATVEKLPLTSLGCPLLLR 73

Query: 59  CKTFLSVTFVIPRERECYDIYVTLQKLSRPE 89
           CK F    FV+  +R C+++Y++L KLS+P 
Sbjct: 74  CKNFRVAHFVLDSDRVCHEVYISLLKLSQPV 104

MTMR8 is a member of the myotubularin dual specificity protein phosphatase gene family. MTMR8 binds to phosphoinositide lipids through its PH-GRAM domain. MTMR8 can self associate and interacts with MTMR6, MTMR7 and MTMR9. MTMR8 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 105

>gnl|CDD|241497 cd13343, PH-GRAM_MTMR6, Myotubularian (MTM) related (MTMR) 6 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =   99 bits (249), Expect = 3e-26
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 9   KPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFV 68
           K   GTL+LT T L+F D+  +KETWIL  HIA++E+  L+T G PL+I+CK F  V F+
Sbjct: 23  KSLTGTLYLTATHLLFIDSL-QKETWILHHHIAAVEKLALTTSGCPLVIQCKNFRVVHFI 81

Query: 69  IPRERECYDIYVTLQKLSRP 88
           +PRER+C+DIY +L +LSRP
Sbjct: 82  VPRERDCHDIYNSLLQLSRP 101

MTMR6 is a member of the myotubularin dual specificity protein phosphatase gene family. MTMR6 binds to phosphoinositide lipids through its PH-GRAM domain. It acts as a negative regulator of KCNN4/KCa3.1 channel activity in CD4+ T-cells possibly by decreasing intracellular levels of phosphatidylinositol-3 phosphatase and negatively regulates proliferation of reactivated CD4+ T-cells MTMR6 interacts with MTMR7, MTMR8 and MTMR9. MTMR6 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 104

>gnl|CDD|241498 cd13344, PH-GRAM_MTMR7, Myotubularian (MTM) related 7 protein (MTMR7) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 97.2 bits (242), Expect = 3e-25
 Identities = 40/91 (43%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 1   MLNRADLRKPFVGTLHLTTTALIFQD--TDCKKETWILLMHIASIERGPLSTLGSPLIIR 58
           +++R   RK  +GTL+LT T +IF +  ++ +KETWIL   I+SIE+   +  G PL+IR
Sbjct: 14  LVDRISSRKAALGTLYLTATHVIFVENGSETRKETWILHSQISSIEKQATTATGCPLLIR 73

Query: 59  CKTFLSVTFVIPRERECYDIYVTLQKLSRPE 89
           CK F  +  +IP+ER+C+D+Y++L +L+RP 
Sbjct: 74  CKNFQIIQLIIPQERDCHDVYISLIRLARPV 104

MTMR7 is a member of the myotubularin dual specificity protein phosphatase gene family. MTMR6 binds to phosphoinositide lipids through its PH-GRAM domain and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate. MTMR7 interacts with MTMR6, MTMR8 and MTMR9. MTMR7 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 107

>gnl|CDD|241365 cd13211, PH-GRAM_MTMR9, Myotubularian (MTM) related 9 protein (MTMR9) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 41/175 (23%)

Query: 7   LRKPF----VGTLHLTTTALIFQD-TDCKKETWILLMHIASIERGP--LSTLGSPLIIRC 59
           L +P      GTL LT   LI     D  +E W+L  +I SIE+     S+ G+ +I++C
Sbjct: 17  LHRPPRPNVEGTLCLTGHHLILSSRQDNAEELWLLHSNIDSIEKKFVGQSSGGT-IILKC 75

Query: 60  KTFLSVTFVIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLL 119
           K F  +   IP   EC +I  +++ LS                      S+    P    
Sbjct: 76  KDFRIIQLDIPGMEECLNIASSIEALS-------------------SLESITLYYP---- 112

Query: 120 KIHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELV 174
                    F Y    E  +  GW  F  E EF R+    D+W  +++N  + + 
Sbjct: 113 ---------FFYRPMFEVLED-GWTAFDPESEFARLLAETDDWRRSSVNNKFSVC 157

MTMR9 is a catalytically inactive phosphatase that plays a role as an adapter for the phosphatase myotubularin to regulate myotubularintracellular location. It contains a Gly residue instead of a conserved Cys residue in the dsPTPase catalytic loop which renders it catalytically inactive as a phosphatase. MTMR9 contains an N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an inactive PTP domain, a SET interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 159

>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCG 200
           + G   LIEK+WLSFGH F+DRCG
Sbjct: 32  IEGFQVLIEKEWLSFGHPFSDRCG 55

This short region is highly conserved and seems to be common to many myotubularin proteins with protein tyrosine pyrophosphate activity. As the family has a number of highly conserved residues such as histidine, cysteine, glutamine and aspartate, it is possible that this represents a catalytic core of the active enzymatic part of the proteins. Length = 55

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 8  RKPFVGTLHLTTTALIF--QDTDCKKETWILLMHIASIE-RGPLSTLGSP--LIIRCKTF 62
            P  GTL+LT   L F  ++ D   E  + L  I+ +E  G  S+  +   L I CK  
Sbjct: 14 VGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCKDM 73

Query: 63 LSVTFVIP-RERECYDIYVTL 82
           ++ F     +    DI+  L
Sbjct: 74 RNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG1089|consensus	573		100.0
KOG4471|consensus	717		100.0
PF06602	353	Myotub-related: Myotubularin-like phosphatase doma	100.0
KOG1090|consensus	1732		99.97
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	96.89
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	96.82
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	95.39
PF12578	142	3-PAP: Myotubularin-associated protein; InterPro:	94.45
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	94.32
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	93.53
PF14470	96	bPH_3: Bacterial PH domain	93.08
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	91.49
KOG3294|consensus	261		90.29
KOG2059|consensus	800		89.53
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	87.82
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	87.6
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	85.87

>KOG1089|consensus

Probab=100.00  E-value=2e-80  Score=627.84  Aligned_cols=276  Identities=48%  Similarity=0.874  Sum_probs=261.9

Q ss_pred             ceeEEEEEeCceEEEEcCC----CCeeEEEecCccceEEeCCCC----CCCCcEEEEeccccEEEEEeCCCcchHHHHHH
Q psy11382         10 PFVGTLHLTTTALIFQDTD----CKKETWILLMHIASIERGPLS----TLGSPLIIRCKTFLSVTFVIPRERECYDIYVT   81 (328)
Q Consensus        10 ~~~GtL~lT~~hLiF~~~~----~~~e~wi~~~~I~~vek~~~s----~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~   81 (328)
                      +..||||||+||+||....    ..+|+|+++.+|++|+|.+.+    ..|++|.|+||||++++|.|+++.+|++||.+
T Consensus        27 ~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~~~i~~~~e~~~v~~s  106 (573)
T KOG1089|consen   27 ALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRVISFLIPDDLECRDVYSS  106 (573)
T ss_pred             cccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCchhhhhhcceEEEEeccchHHHHHHHHH
Confidence            8999999999999999655    789999999999999999876    78999999999999999999999999999999


Q ss_pred             HHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceecccccccCCCC-CCCCCCCcccCHHHHHHhcCC--C
Q psy11382         82 LQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTE-SPKSYGWDFFSLEQEFKRMQV--P  158 (328)
Q Consensus        82 l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~~~~~-~~~~dGW~~fd~~~Ef~R~Gv--~  158 (328)
                      |.+|+.+                                .++..+|||+|.|... ....-||++|++++||+|||+  +
T Consensus       107 ~~~ls~~--------------------------------~~~~~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~~~~~  154 (573)
T KOG1089|consen  107 IENLSNI--------------------------------DSILQLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMGIRKG  154 (573)
T ss_pred             HHHhccc--------------------------------CccccccccccCCcccccccccCceecchHhHHHHHhccCC
Confidence            9999999                                8999999999999987 223339999999999999999  9


Q ss_pred             CCCeEEeeccccccccccc-------------------------c-----------------------------------
Q psy11382        159 NDEWCLTNLNKNYELVDIL-------------------------R-----------------------------------  178 (328)
Q Consensus       159 ~d~WRiS~iN~~Y~lC~TY-------------------------R-----------------------------------  178 (328)
                      +..||+|+||++|++|+||                         |                                   
T Consensus       155 ~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~SqPL~g~~~~Rc~~DE~  234 (573)
T KOG1089|consen  155 NSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRSSQPLSGFIAKRCREDEK  234 (573)
T ss_pred             CCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeeecCCCcccccccchHHHH
Confidence            9999999999999999996                         0                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy11382        179 --------------------------------------------------------------------------------  178 (328)
Q Consensus       179 --------------------------------------------------------------------------------  178 (328)
                                                                                                      
T Consensus       235 il~ai~k~~~~~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~~~~~~~l  314 (573)
T KOG1089|consen  235 ILEAILKANPNSKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFLPTMDKWL  314 (573)
T ss_pred             HHHHHHhhCcCccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccCccHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------Cc-ceEEeeeeecccccc
Q psy11382        179 --------------------------------------------------------------GG-TSLIEKDWLSFGHKF  195 (328)
Q Consensus       179 --------------------------------------------------------------~G-~~LIEKEWl~fGH~F  195 (328)
                                                                                    +| |+|||||||+|||||
T Consensus       315 s~LE~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F  394 (573)
T KOG1089|consen  315 SLLESSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKF  394 (573)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcH
Confidence                                                                          34 999999999999999


Q ss_pred             ccccCCC---CCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCccc
Q psy11382        196 TDRCGHL---AGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYS  272 (328)
Q Consensus       196 ~~R~gh~---~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T~S  272 (328)
                      .+||||.   ...+++.||||+|||||||||++|||++|||||+||+.|++|+|||+|||||||||+||.++++..+|.|
T Consensus       395 ~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~kt~s  474 (573)
T KOG1089|consen  395 LDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEKTTS  474 (573)
T ss_pred             HHhcCCcccccCCCcccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhccccccCHHHHHHhccccccee
Confidence            9999999   5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhcccccccCCCCCCCCCCCceeccCCCCC----eeecCCCccccch
Q psy11382        273 LWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQN----IRYTPFLTVEKNY  319 (328)
Q Consensus       273 lW~~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~----l~lW~~~Y~R~~~  319 (328)
                      +|+|+.+++++|+||+|+|.  ..+++|+++|+.    +++|.++|.||..
T Consensus       475 lW~~~~~~~~~f~Nply~~~--~~~~~~~l~P~~~~~~l~~W~~~y~r~d~  523 (573)
T KOG1089|consen  475 LWDYLLPRKEEFVNPLYDPR--YLVIWPILAPQTATLSLQVWSSLYERWDE  523 (573)
T ss_pred             hHHhHhhhhhhhcCcccccc--ccceeeccCcccccchhHHHHHHHHhhcc
Confidence            99999999999999999999  689999999999    9999999999986

>KOG4471|consensus

Probab=100.00  E-value=2.3e-79  Score=616.17  Aligned_cols=283  Identities=35%  Similarity=0.638  Sum_probs=260.2

Q ss_pred             CceeEEEEEeCceEEEEcCCCC--eeEEEecCccceEEeCCCCCCC---CcEEEEeccccEEEEEeCCCcchH-HHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTDCK--KETWILLMHIASIERGPLSTLG---SPLIIRCKTFLSVTFVIPRERECY-DIYVTL   82 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~~--~e~wi~~~~I~~vek~~~s~~g---~~L~i~CKdfr~~~f~~~~~~~~~-~v~~~l   82 (328)
                      +++.|||.||||+|.|.+.++.  -.+.||++.|++|||.++.+.|   ++|+|.|||+|++++.|+++++|+ ++++.|
T Consensus        53 G~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L  132 (717)
T KOG4471|consen   53 GAVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERL  132 (717)
T ss_pred             ccccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHH
Confidence            4899999999999999985543  5789999999999999765445   689999999999999999999998 999999


Q ss_pred             HHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceecccccccCCCCC---CCCCCCcccCH--HHHHHhcCC
Q psy11382         83 QKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTES---PKSYGWDFFSL--EQEFKRMQV  157 (328)
Q Consensus        83 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~~~~~~---~~~dGW~~fd~--~~Ef~R~Gv  157 (328)
                      .+.++|.                               .+.+.||||.|...+..   ....+|.+|+|  ..|++|||+
T Consensus       133 ~~~~~p~-------------------------------~~~~~LFaF~~~~~~~~ng~e~~~~~~l~~P~~~~E~~r~g~  181 (717)
T KOG4471|consen  133 NRAAFPP-------------------------------AKSEDLFAFAYHAWFPVNGSENGQHWKLYDPMFKNEYRRQGL  181 (717)
T ss_pred             HHhcCCc-------------------------------ccchhhhhcccHhhcCCCCccccccccccChhhHhHHHhcCC
Confidence            9999992                               77899999999888752   12234999999  999999999


Q ss_pred             CCCCeEEeeccccccccccc-------------------------c----------------------------------
Q psy11382        158 PNDEWCLTNLNKNYELVDIL-------------------------R----------------------------------  178 (328)
Q Consensus       158 ~~d~WRiS~iN~~Y~lC~TY-------------------------R----------------------------------  178 (328)
                      +++.||||.||++|++|+||                         |                                  
T Consensus       182 ~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQPlVG~~g~Rn~~DE  261 (717)
T KOG4471|consen  182 PNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVIARCSQPLVGWSGKRNKDDE  261 (717)
T ss_pred             ChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceEEecCCcccchhcccccchH
Confidence            99999999999999999997                         0                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy11382        179 --------------------------------------------------------------------------------  178 (328)
Q Consensus       179 --------------------------------------------------------------------------------  178 (328)
                                                                                                      
T Consensus       262 kll~~i~~a~A~~~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~mR~s~~~~k~~~~~~~d~s  341 (717)
T KOG4471|consen  262 KLLQAIADANAQDGERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVMRESLRKLKEICYPSPDES  341 (717)
T ss_pred             HHHHHHHHhcccccccceEEEEecccchhhhhccccCCCccChhccccceEEEeecchhHHHHHHHHhHHHhhcCCCCch
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------Cc-ceEEeeeeeccc
Q psy11382        179 -----------------------------------------------------------------GG-TSLIEKDWLSFG  192 (328)
Q Consensus       179 -----------------------------------------------------------------~G-~~LIEKEWl~fG  192 (328)
                                                                                       +| |||||||||+||
T Consensus       342 ~wlS~Le~T~WL~Hi~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFG  421 (717)
T KOG4471|consen  342 NWLSALESTHWLEHISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFG  421 (717)
T ss_pred             hHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcC
Confidence                                                                             34 999999999999


Q ss_pred             cccccccCCCCC--CCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCc
Q psy11382        193 HKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENT  270 (328)
Q Consensus       193 H~F~~R~gh~~~--~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T  270 (328)
                      |||++|+||++.  +..++||||||||||||||++|||+||||||.||+.|+||+|||+|||||||||+||.+.++.++|
T Consensus       422 HkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGTFLcN~ekeR~~~~i~~~t  501 (717)
T KOG4471|consen  422 HKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGTFLCNSEKEREKEDITERT  501 (717)
T ss_pred             ChhhhhcCCCCCcccccccCchhHHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhhhhcCCHHHHhhcCcccch
Confidence            999999999965  468999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhcccccccCCCCCCCCCCCceeccCCCCCeeecCCCccccchhHHh
Q psy11382        271 YSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQ  323 (328)
Q Consensus       271 ~SlW~~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~~  323 (328)
                      .|+|+|+++.++.|.||+|++.. ..||+|..+..++.+|.++|+||+++...
T Consensus       502 ~slWs~l~s~~~~f~Np~y~~~s-~~vL~Pvas~r~l~LW~~~ylrw~~~~~~  553 (717)
T KOG4471|consen  502 GSLWSYLNSSLSNFCNPFYDPSS-NGVLYPVASVRALELWVQYYLRWNPPMEP  553 (717)
T ss_pred             hhHHHHHhhcchhhcCcccCchh-cccccchHhhhchhhceeeeeccCCCCCC
Confidence            99999999999999999999997 69999999999999999999999987654

>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO

Probab=100.00  E-value=1.6e-47  Score=374.13  Aligned_cols=83  Identities=59%  Similarity=1.049  Sum_probs=72.6

Q ss_pred             ceEEeeeeeccccccccccCCC---CCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCc
Q psy11382        181 TSLIEKDWLSFGHKFTDRCGHL---AGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNC  257 (328)
Q Consensus       181 ~~LIEKEWl~fGH~F~~R~gh~---~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Ns  257 (328)
                      ++||||||++|||||.+|+||.   ....++.||||+|||||||||++|||++|||||.||++|+||+|||+||||||||
T Consensus       267 ~~LIeKeW~~fGH~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~L~~l~~~~~s~~fgtFl~n~  346 (353)
T PF06602_consen  267 QVLIEKEWISFGHPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESLLIFLADHSYSGRFGTFLFNS  346 (353)
T ss_dssp             HHHHHHHTTTTT--HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHHHHHHHHHHCCTSSTTT-SSS
T ss_pred             HHHHHHHHHhcCcchhhhcCCcccccccccccccchhHHHHHHHHHHHhCCCceecCHHHHHHHHHHHhcCCCCccccCC
Confidence            9999999999999999999999   5578899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy11382        258 EKDRLD  263 (328)
Q Consensus       258 e~eR~~  263 (328)
                      |+||.+
T Consensus       347 e~eR~~  352 (353)
T PF06602_consen  347 EKEREE  352 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            999986

Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.

>KOG1090|consensus

Probab=99.97  E-value=1.8e-32  Score=287.36  Aligned_cols=127  Identities=40%  Similarity=0.786  Sum_probs=114.0

Q ss_pred             Cc-ceEEeeeeeccccccccccCCCCCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCc
Q psy11382        179 GG-TSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNC  257 (328)
Q Consensus       179 ~G-~~LIEKEWl~fGH~F~~R~gh~~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Ns  257 (328)
                      || +||+||||++|||.| .|.      ....||+|+||||||+|+.+|||.|||||.-||.+|++|..||+|-|||.||
T Consensus      1309 dGFrvLVEKEWLaFGHrF-Hr~------~~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~FLaYHsvs~rFRTFl~Dc 1381 (1732)
T KOG1090|consen 1309 DGFRVLVEKEWLAFGHRF-HRD------TETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLSFLAYHSVSGRFRTFLLDC 1381 (1732)
T ss_pred             cchhhhhhhhhhhhcchh-ccc------ccccCchHHHHHHHHHHHHHhccchhhhHHHHHHHHhhhccchhhhhhhccc
Confidence            45 999999999999999 553      3678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcc-------------CCcccchhhhhc---ccccccCCCCCCCCCCCceeccCCCCCeeecCCC
Q psy11382        258 EKDRLDLRLS-------------ENTYSLWGYMAN---RMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFL  313 (328)
Q Consensus       258 e~eR~~~~~~-------------~~T~SlW~~~~~---~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~  313 (328)
                      |.||.+.++.             -.|.|+|.||..   ....|.|-+|.+.. ..++.|..+..+|++|.-|
T Consensus      1382 e~eR~esg~~~~ek~er~~~p~nr~~~svweyI~r~~k~Tp~FyN~lYa~~~-s~ilrP~snV~~l~~W~fy 1452 (1732)
T KOG1090|consen 1382 EEERIESGLLYEEKGERRGQPLNRATISVWEYIDRLSKRTPAFYNYLYAPED-SEILRPYSNVSNLKVWDFY 1452 (1732)
T ss_pred             cHHhhhhhhhHHhhccccCCCcccccchHHHHHHHhcccChhHHHHhhCcCC-cccccccCCccccceeccc
Confidence            9999988752             237899999973   35789999999986 6899999999999999754

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=96.89  E-value=0.0021  Score=47.35  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             CCCceeEEEEEeCceEEEEcCCCC--e-eEEEecCccceEEeC
Q psy11382          7 LRKPFVGTLHLTTTALIFQDTDCK--K-ETWILLMHIASIERG   46 (328)
Q Consensus         7 ~~~~~~GtL~lT~~hLiF~~~~~~--~-e~wi~~~~I~~vek~   46 (328)
                      ...+..|+||||++||.|.+...+  . .+-||+..|.+|||.
T Consensus        18 ~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~   60 (61)
T smart00568       18 RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS   60 (61)
T ss_pred             CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence            346899999999999999984322  3 678999999999986

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=96.82  E-value=0.003  Score=47.64  Aligned_cols=39  Identities=31%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             CCceeEEEEEeCceEEEEcCCC-C-e-eEEEecCccceEEeC
Q psy11382          8 RKPFVGTLHLTTTALIFQDTDC-K-K-ETWILLMHIASIERG   46 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~~~-~-~-e~wi~~~~I~~vek~   46 (328)
                      ..+..|+||||++||.|.+... . . .+-||+..|.+|||.
T Consensus        27 ~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~   68 (69)
T PF02893_consen   27 KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE   68 (69)
T ss_dssp             ---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred             ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence            5589999999999999998322 2 2 588999999999985

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=95.39  E-value=0.032  Score=45.21  Aligned_cols=52  Identities=25%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CceeEEEEEeCceEEEEcCCC-C-eeEEEecCccceEEeCCCC-CCCCcEEEEec
Q psy11382          9 KPFVGTLHLTTTALIFQDTDC-K-KETWILLMHIASIERGPLS-TLGSPLIIRCK   60 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~-~-~e~wi~~~~I~~vek~~~s-~~g~~L~i~CK   60 (328)
                      +-..|+|+||+|||||.+... . ..+-|++..|..+|...+- .+..-|.++.|
T Consensus        34 ~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~sSpKI~l~l~   88 (89)
T PF11605_consen   34 NFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLKSSPKIILHLK   88 (89)
T ss_dssp             T-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTSSS-EEEEEES
T ss_pred             cccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccCCCCeEEEEec
Confidence            345899999999999997432 2 3689999999999865432 23345665543

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF12578 3-PAP: Myotubularin-associated protein; InterPro: IPR022587 The proteins in this entry are found in eukaryotes, and are typically between 115 and 138 amino acids in length

Probab=94.45  E-value=0.0089  Score=52.21  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             cccccCCCCC-CCCCCCceeccCCCCCeeecCCCccccchhHHhhccC
Q psy11382        281 MEDYINPLYS-PDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQKQNA  327 (328)
Q Consensus       281 ~~~f~Np~Y~-~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~~~~~~  327 (328)
                      .++|.+..+. |....++|.|.....+|++|+++|+||++.+-+.+|.
T Consensus        59 ~~~~~~~~~~~P~d~~~lL~P~~~~~~i~lW~qcYlRW~P~a~i~~gg  106 (142)
T PF12578_consen   59 SEQFFRDWFSKPADSHGLLLPLLSGPQIKLWSQCYLRWIPEAQIRGGG  106 (142)
T ss_pred             hHhhccccccCCcccccccccccccccHHHHHHHHHccCcHHHccCCC
Confidence            4556666664 3233689999999999999999999999998776654

This entry contains myotubularin-associated protein 12 (also known as the phosphatidylinositol-3 phosphate 3-phosphatase adapter subunit, 3-PAP). 3-PAP is a catalytically inactive member of the myotubularin gene family, which coprecipitates lipid phosphatidylinositol 3-phosphate-3-phosphatase activity from lysates of human platelets [].

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=94.32  E-value=0.044  Score=46.19  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCCceeEEEEEeCceEEEEcCCCCe-------e-E--------EEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeC
Q psy11382          7 LRKPFVGTLHLTTTALIFQDTDCKK-------E-T--------WILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIP   70 (328)
Q Consensus         7 ~~~~~~GtL~lT~~hLiF~~~~~~~-------e-~--------wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~   70 (328)
                      +...+.|+|.||+.||+|...+...       + +        -+++..|..|-+..---+...|+|.|.|=..+=|+|+
T Consensus        14 Pl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~   93 (108)
T cd01201          14 PGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFFAFP   93 (108)
T ss_pred             EEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEEEeC
Confidence            4456789999999999999632111       1 0        2334444444433222245789999999888899999


Q ss_pred             CCcchHHHHHHH
Q psy11382         71 RERECYDIYVTL   82 (328)
Q Consensus        71 ~~~~~~~v~~~l   82 (328)
                      +.+..+.|..+|
T Consensus        94 ~~~~~k~vv~~l  105 (108)
T cd01201          94 DQNAVKKVVYAL  105 (108)
T ss_pred             cHHHHHHHHhhc
Confidence            776666665443

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=93.53  E-value=0.097  Score=42.59  Aligned_cols=76  Identities=20%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             CCCceeEEEEEeCceEEEEcC-----------------CCCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEe
Q psy11382          7 LRKPFVGTLHLTTTALIFQDT-----------------DCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVI   69 (328)
Q Consensus         7 ~~~~~~GtL~lT~~hLiF~~~-----------------~~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~   69 (328)
                      ......|+|.||+.|++|.+.                 +..+..-+++..|..|.++.---+...|+|-.+|=+.+=|+|
T Consensus        13 ~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~f~~F   92 (106)
T PF14844_consen   13 PLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSYFFNF   92 (106)
T ss_dssp             TTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EEEEE-
T ss_pred             eeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEEEEEc
Confidence            445689999999999999854                 112335578899999987643333567999999999999999


Q ss_pred             CCCcchHHHHHHH
Q psy11382         70 PRERECYDIYVTL   82 (328)
Q Consensus        70 ~~~~~~~~v~~~l   82 (328)
                      ++..++.++|..|
T Consensus        93 ~~~~~R~~v~~~l  105 (106)
T PF14844_consen   93 ESKKERDEVYNKL  105 (106)
T ss_dssp             SSHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHhh
Confidence            9888888888654

>PF14470 bPH_3: Bacterial PH domain

Probab=93.08  E-value=0.78  Score=35.83  Aligned_cols=73  Identities=23%  Similarity=0.227  Sum_probs=53.9

Q ss_pred             CceeEEEEEeCceEEEEcCC---CCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTD---CKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIYVTLQ   83 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~---~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~   83 (328)
                      ....|.|.+|+-||||...+   ...-.-|+|..|.+|+...+- .+..|.|.+ +=..+++.--+..+...+++.|+
T Consensus        20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~   95 (96)
T PF14470_consen   20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-NGEKIKIDNIQKGDVKEFYEYIK   95 (96)
T ss_pred             cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-CCEEEEEEEcCHHHHHHHHHHHh
Confidence            46789999999999999743   244568999999999966322 345689998 44666776335567778877775

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=91.49  E-value=1.1  Score=38.49  Aligned_cols=76  Identities=24%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             ceeEEEEEeCceEEEEc----CCCCeeE-EEecCccceEEeCCCC--CCCCcEEEEecccc-EEEEEeCCCcchHHHHHH
Q psy11382         10 PFVGTLHLTTTALIFQD----TDCKKET-WILLMHIASIERGPLS--TLGSPLIIRCKTFL-SVTFVIPRERECYDIYVT   81 (328)
Q Consensus        10 ~~~GtL~lT~~hLiF~~----~~~~~e~-wi~~~~I~~vek~~~s--~~g~~L~i~CKdfr-~~~f~~~~~~~~~~v~~~   81 (328)
                      .++..+++||.|||+.+    +..+.++ =|||..|.++.--...  ...+.|.|.-..-. .+.+.|++..+..+++..
T Consensus        39 ~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~~di~~i~k~  118 (124)
T PF08000_consen   39 LIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKKTDIYEIYKA  118 (124)
T ss_dssp             ESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTTSHHHHHHHH
T ss_pred             hhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCCCCHHHHHHH
Confidence            45788999999999998    3344554 8999999988654321  12356666655543 355889999999999999


Q ss_pred             HHHh
Q psy11382         82 LQKL   85 (328)
Q Consensus        82 l~~l   85 (328)
                      |.+.
T Consensus       119 L~~~  122 (124)
T PF08000_consen  119 LAEY  122 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

; PDB: 3DCX_E 3HSA_C 3B77_D.

>KOG3294|consensus

Probab=90.29  E-value=0.24  Score=47.11  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CCCceeEEEEEeCceEEEEcCCCC---eeEEEecCccceEE
Q psy11382          7 LRKPFVGTLHLTTTALIFQDTDCK---KETWILLMHIASIE   44 (328)
Q Consensus         7 ~~~~~~GtL~lT~~hLiF~~~~~~---~e~wi~~~~I~~ve   44 (328)
                      .....+||||||+||+||.+.+.+   +..-++...|..++
T Consensus        43 ~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~k   83 (261)
T KOG3294|consen   43 FKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVK   83 (261)
T ss_pred             cccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhce
Confidence            456789999999999999985433   34567777777665

>KOG2059|consensus

Probab=89.53  E-value=0.68  Score=50.01  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             EEEEEeCceEEEEc-CCCCeeEEEecCccceEEeCCCCCC--CCcEEEEeccccEEEEEeCCCcchHHHHHHHHHhcCCC
Q psy11382         13 GTLHLTTTALIFQD-TDCKKETWILLMHIASIERGPLSTL--GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQKLSRPE   89 (328)
Q Consensus        13 GtL~lT~~hLiF~~-~~~~~e~wi~~~~I~~vek~~~s~~--g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~l~~p~   89 (328)
                      --..||++||+|.- ++.....-||+.+|..|||+.-.+-  ..-+.|.|-| |.+.+.-+...|+.+..+.|.+.+...
T Consensus       589 ryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~kvs~~N  667 (800)
T KOG2059|consen  589 RYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRKVSCCN  667 (800)
T ss_pred             eEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHHHhccC
Confidence            35789999999985 5566678999999999998753322  2468899999 888888888889999999999998873

>cd00900 PH-like Pleckstrin homology-like domain

Probab=87.82  E-value=6.3  Score=28.92  Aligned_cols=76  Identities=24%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             CCceeEEEEEeCceEEEEcCCCCeeE---EEecCccceEEeCCCC-CCCCcEEEEecc--ccEEEEEeCCCcchHHHHHH
Q psy11382          8 RKPFVGTLHLTTTALIFQDTDCKKET---WILLMHIASIERGPLS-TLGSPLIIRCKT--FLSVTFVIPRERECYDIYVT   81 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~~~~~e~---wi~~~~I~~vek~~~s-~~g~~L~i~CKd--fr~~~f~~~~~~~~~~v~~~   81 (328)
                      +......+.|++..|.+...+.....   -+++..|. |+..+.. .....+.|.+++  .+.+.|..+++.++..+..+
T Consensus        17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~a   95 (99)
T cd00900          17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEA   95 (99)
T ss_pred             cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHH
Confidence            56788889999999999975543333   36777777 7765421 234678999997  99999999999999999888


Q ss_pred             HHH
Q psy11382         82 LQK   84 (328)
Q Consensus        82 l~~   84 (328)
                      |+.
T Consensus        96 l~~   98 (99)
T cd00900          96 LQQ   98 (99)
T ss_pred             Hhc
Confidence            864

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=87.60  E-value=4.2  Score=33.37  Aligned_cols=70  Identities=26%  Similarity=0.306  Sum_probs=54.0

Q ss_pred             EEEEeCceEEEEcC-CCCeeEEEecCccceEEeCCCCCC--CCcEEEEeccccEEEEEeCCCcchHHHHHHHHH
Q psy11382         14 TLHLTTTALIFQDT-DCKKETWILLMHIASIERGPLSTL--GSPLIIRCKTFLSVTFVIPRERECYDIYVTLQK   84 (328)
Q Consensus        14 tL~lT~~hLiF~~~-~~~~e~wi~~~~I~~vek~~~s~~--g~~L~i~CKdfr~~~f~~~~~~~~~~v~~~l~~   84 (328)
                      -..||+.+|.+... ....---|++..|..||..+....  ...+.|.+.| +.+-+..+++.|+.+..+.|++
T Consensus        25 wF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          25 YFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             EEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHHhc
Confidence            47899999988753 333334799999999998764333  3678999977 8888888998899988888765

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=85.87  E-value=2.5  Score=31.62  Aligned_cols=38  Identities=11%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             CCCceeEEEEEeCceEEEEcCC-CCeeEEEecCccceEE
Q psy11382          7 LRKPFVGTLHLTTTALIFQDTD-CKKETWILLMHIASIE   44 (328)
Q Consensus         7 ~~~~~~GtL~lT~~hLiF~~~~-~~~e~wi~~~~I~~ve   44 (328)
                      ....-.|+|++||-|+|+.+.. ..--+=|+|..|.++.
T Consensus        15 gn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~   53 (55)
T smart00683       15 GNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVR   53 (55)
T ss_pred             CCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEE
Confidence            3455779999999999999854 3345778888888774

4, worm R01H10.6, fly CG1126 etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
2yf0_A	512	Human Myotubularin Related Protein 6 (Mtmr6) Length		3e-43
1lw3_A	657	Crystal Structure Of Myotubularin-Related Protein 2		1e-30
1zsq_A	528	Crystal Structure Of Mtmr2 In Complex With Phosphat		2e-30

>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6) Length = 512

Iteration: 1
 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 94/118 (79%)
Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEI 236
           ++G   LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E 
Sbjct: 361 IKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEA 420
Query: 237 FLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAH 294
           FLL + +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++    + Y+NPLYS ++H
Sbjct: 421 FLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESH 478

>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2 Complexed With Phosphate Length = 657

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 6/118 (5%)
Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV----SPVFVQFLECSWQLSVQFPQAFE 232
           +RG   L+EK+WLSFGH+F  R GH  GD        SPVF+QF++C WQ++ QFP AFE
Sbjct: 445 IRGFEVLVEKEWLSFGHRFQLRVGH--GDKNHADADRSPVFLQFIDCVWQMTRQFPTAFE 502
Query: 233 FNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYS 290
           FNE FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY 
Sbjct: 503 FNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYG 560

>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With Phosphatidylinositol 3-Phosphate Length = 528

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 6/118 (5%)
Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPREV----SPVFVQFLECSWQLSVQFPQAFE 232
           +RG   L+EK+WLSFGH+F  R GH  GD        SPVF+QF++C WQ++ QFP AFE
Sbjct: 373 IRGFEVLVEKEWLSFGHRFQLRVGH--GDKNHADADRSPVFLQFIDCVWQMTRQFPTAFE 430
Query: 233 FNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYS 290
           FNE FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY 
Sbjct: 431 FNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYG 488

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	5e-43
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	8e-17
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	7e-43
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	3e-16
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	7e-42
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	2e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657

 Score =  156 bits (394), Expect = 5e-43
 Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 3/129 (2%)

Query: 182 SLIEKDWLSFGHKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLL 239
            L+EK+WLSFGH+F  R GH        + SPVF+QF++C WQ++ QFP AFEFNE FL+
Sbjct: 450 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 509

Query: 240 TLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIR 299
           T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY        + 
Sbjct: 510 TILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLY 568

Query: 300 PDLSPQNIR 308
           P  S +++ 
Sbjct: 569 PVASMRHLE 577

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657

 Score = 80.0 bits (196), Expect = 8e-17
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 41/173 (23%)

Query: 8   RKPFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTL----GSPLIIRCKT 61
                GTL +T   L F+  +          L  I  +E+   ++        L   CK 
Sbjct: 101 TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD 160

Query: 62  FLSVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLK 120
             ++ F   P  R    I+  L K + P                                
Sbjct: 161 IRNLRFAHKPEGRTRRSIFENLMKYAFP-------------------------------V 189

Query: 121 IHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYEL 173
            +   L+ F Y    E     GW  +    E++R  +PN+ W +T +N+ YEL
Sbjct: 190 SNNLPLFAFEY---KEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYEL 239

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528

 Score =  154 bits (389), Expect = 7e-43
 Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 3/129 (2%)

Query: 182 SLIEKDWLSFGHKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLL 239
            L+EK+WLSFGH+F  R GH        + SPVF+QF++C WQ++ QFP AFEFNE FL+
Sbjct: 378 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 437

Query: 240 TLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIR 299
           T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY        + 
Sbjct: 438 TILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSY-SNHVLY 496

Query: 300 PDLSPQNIR 308
           P  S +++ 
Sbjct: 497 PVASMRHLE 505

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528

 Score = 78.0 bits (191), Expect = 3e-16
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 41/173 (23%)

Query: 8   RKPFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTL----GSPLIIRCKT 61
                GTL +T   L F+  +          L  I  +E+   ++        L   CK 
Sbjct: 29  TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD 88

Query: 62  FLSVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLK 120
             ++ F   P  R    I+  L K + P                                
Sbjct: 89  IRNLRFAHKPEGRTRRSIFENLMKYAFP-------------------------------V 117

Query: 121 IHIEELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYEL 173
            +   L+ F Y    E     GW  +    E++R  +PN+ W +T +N+ YEL
Sbjct: 118 SNNLPLFAFEY---KEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYEL 167

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512

 Score =  151 bits (381), Expect = 7e-42
 Identities = 73/128 (57%), Positives = 96/128 (75%), Gaps = 1/128 (0%)

Query: 182 SLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTL 241
            LIEKDW+SFGHKF++RCG L GDP+EVSPVF QFLEC W L+ QFPQAFEF+E FLL +
Sbjct: 366 VLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQI 425

Query: 242 QDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPD-FIRP 300
            +H+ SCQFG F+GNC+K+R +L+L E TYSLW ++    + Y+NPLYS ++H    + P
Sbjct: 426 HEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEP 485

Query: 301 DLSPQNIR 308
           +    N +
Sbjct: 486 NTVSFNFK 493

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512

 Score =  116 bits (291), Expect = 2e-29
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 34/169 (20%)

Query: 8   RKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTF 67
            K   GTL+LT T L+F D+  +KETWIL  HIAS+E+  L+T G PL+I+CK F +V F
Sbjct: 22  NKSLTGTLYLTATHLLFIDSH-QKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHF 80

Query: 68  VIPRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELY 127
           ++PRER+C+DIY +L +LS+                                    E+LY
Sbjct: 81  IVPRERDCHDIYNSLLQLSKQA--------------------------------KYEDLY 108

Query: 128 CFTYTSTT-ESPKSYGWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
            F+Y     +S +  GW    L +E+KRM VPN  W L++ N++Y++ +
Sbjct: 109 AFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICE 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 61/224 (27%)

Query: 123 IEELYCFTYTSTTESPKSYGWDFFSLEQEFKR-MQVPNDE-------WCL---------- 164
           ++   C       + PKS      S ++E    +   +         W L          
Sbjct: 30  VDNFDC---KDVQDMPKS----ILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 165 ---TNLNKNYE-LVDILRG---GTSLIEKDWLSFGHKFTDRCGHLAGDPREVSPVFVQFL 217
                L  NY+ L+  ++      S++ + ++       DR   L  D +  +   V  L
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ----RDR---LYNDNQVFAKYNVSRL 134

Query: 218 ECSWQLSVQFPQAFEFNEIFL-------------LTLQDHVTSCQ--FGTF---VGNCEK 259
           +   +L     +      + +                  +   C+  F  F   + NC  
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 260 DRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLS 303
               L + +    L   +        +   +       I+ +L 
Sbjct: 195 PETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 39/291 (13%), Positives = 73/291 (25%), Gaps = 48/291 (16%)

Query: 57  IRCKTFL-----SVTFVIPRERECYDIYVTLQK-LSRPEPKKLRRR---REPYPEPP-VC 106
           + CK  L      VT  +      +         L+  E K L  +     P   P  V 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 107 KS-----SVI-------PTRPQRLLKIHIEEL-----YCFTYTSTTESPKSYGWDFFSLE 149
            +     S+I                ++ ++L              E  K +        
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFP 382

Query: 150 QEFKRMQVPNDEWCLTNLNKNYELV-DILRG--GTSLIEKDWLSFGHKFTDRCGHLAGDP 206
                  +P     L   +     V  ++      SL+EK               L    
Sbjct: 383 PSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 207 REVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQD--------HVTSCQFGTFVGNCE 258
                +    ++         P+ F+ +++    L          H+ + +    +    
Sbjct: 440 ENEYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 259 KDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRY 309
              LD R  E          N     +N L     +  +I  +  P+  R 
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERL 544

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	100.0
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	100.0
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	100.0
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	96.62
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	95.1
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	93.82
3b77_A	193	Uncharacterized protein; pleckstrin-homology domai	86.21
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	83.11
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	81.37

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-89  Score=694.54  Aligned_cols=288  Identities=48%  Similarity=0.957  Sum_probs=263.4

Q ss_pred             CCccCC-CCCceeEEEEEeCceEEEEcCCCCeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCcchHHHH
Q psy11382          1 MLNRAD-LRKPFVGTLHLTTTALIFQDTDCKKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRERECYDIY   79 (328)
Q Consensus         1 ~~~~~~-~~~~~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~~~~~v~   79 (328)
                      |++|.+ .++++.|||+||||||||.+ +.++|+||+|++|++|||.+.++.|++|.|+|||||+++|.|+++++|.+||
T Consensus        14 l~~~~~~~~~~~~GtL~lTn~~LiF~~-~~~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDfr~~~f~f~~~~~~~~v~   92 (512)
T 2yf0_A           14 LLDRFSTSNKSLTGTLYLTATHLLFID-SHQKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIY   92 (512)
T ss_dssp             CC--------CCEEEEEECSSEEEEEE-SSSCEEEEEGGGEEEEEECCCBTTBEEEEEEETTSCEEEEEESCHHHHHHHH
T ss_pred             EEeccCCCCCceeEEEEEECCEEEEeC-CCCCceEecccceeEEEEecCCCCCceEEEEecCCcEEEEEeCChHHHHHHH
Confidence            456765 68899999999999999998 5568999999999999999887788999999999999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceecccccccCCCCC-CCCCCCcccCHHHHHHhcCCC
Q psy11382         80 VTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYTSTTES-PKSYGWDFFSLEQEFKRMQVP  158 (328)
Q Consensus        80 ~~l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~~~~~~-~~~dGW~~fd~~~Ef~R~Gv~  158 (328)
                      ++|+++++|                                .++++||||.|+|.... ...+||++||++.||+|||++
T Consensus        93 ~sL~~~~~p--------------------------------~~~~~lfaF~y~~~~~~~~~~~gw~~yd~~~E~~R~g~~  140 (512)
T 2yf0_A           93 NSLLQLSKQ--------------------------------AKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYKRMGVP  140 (512)
T ss_dssp             HHHHHHSCC--------------------------------CCSTTSGGGTCCCSCCSHHHHHHHTTCCHHHHHHHTTCS
T ss_pred             HHHHhhcCC--------------------------------CCcceeEEEeccccccccccCCCccccCHHHHHHHcCCC
Confidence            999999999                                78899999999998652 236899999999999999999


Q ss_pred             CCCeEEeeccccccccccc-------------------------c-----------------------------------
Q psy11382        159 NDEWCLTNLNKNYELVDIL-------------------------R-----------------------------------  178 (328)
Q Consensus       159 ~d~WRiS~iN~~Y~lC~TY-------------------------R-----------------------------------  178 (328)
                      ++.||||++|++|++|+||                         |                                   
T Consensus       141 ~~~WRis~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~fRs~~R~Pvl~w~h~~~~a~l~RssQP~~G~~~r~~eDE~l  220 (512)
T 2yf0_A          141 NSHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSARCLEDEHL  220 (512)
T ss_dssp             SSSEEEEGGGTTSCSCSSSCSSEEEESSSCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEECCCBCCCSSCCCHHHHHH
T ss_pred             cccEEEehhhcCCCccccCCceEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEecCCcCcCcccCCHHHHHH
Confidence            9999999999999999997                         0                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy11382        179 --------------------------------------------------------------------------------  178 (328)
Q Consensus       179 --------------------------------------------------------------------------------  178 (328)
                                                                                                      
T Consensus       221 l~~i~~~~~~~~~~~i~D~rp~~~a~an~a~G~G~E~~~~Y~~~~~~f~~i~nIh~~r~S~~kL~~~~~~~~~~~~~~ls  300 (512)
T 2yf0_A          221 LQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVNDFYS  300 (512)
T ss_dssp             HHHHHHHCSSCCCEEEEECCSSCCC----CCCCSCCCTTTSTTEEEEECCCCCHHHHHHHHHHHHHHHSCCSCCHHHHHH
T ss_pred             HHHHHHhCCCCCceEEEecCchhhHHHHHhcCCCcccccccCCceeEecChhhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------Cc-ceEEeeeeeccccccc
Q psy11382        179 -------------------------------------------------------------GG-TSLIEKDWLSFGHKFT  196 (328)
Q Consensus       179 -------------------------------------------------------------~G-~~LIEKEWl~fGH~F~  196 (328)
                                                                                   +| ++|||||||+|||||.
T Consensus       301 ~Le~s~WL~~i~~iL~~a~~ia~~v~~~g~sVLVhcsDGwDrT~ql~SLaqllLDPyyRTi~GF~~LIEKEWlsfGH~F~  380 (512)
T 2yf0_A          301 GLESSGWLRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFS  380 (512)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTTCCCEEECTTTSSSHHHHHHHHHHHHHCSGGGSHHHHHHHHHHHTTTTTCCHH
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCCccccHHHHHHHHHHhCccccHHHHHHHHHhhHHhhcCCchh
Confidence                                                                         34 9999999999999999


Q ss_pred             cccCCCCCCCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCcccchhh
Q psy11382        197 DRCGHLAGDPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGY  276 (328)
Q Consensus       197 ~R~gh~~~~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T~SlW~~  276 (328)
                      +||||..++++|.||||+|||||||||++|||++|||||.||++|+||+|||+|||||||||+||.+.++.++|.|||+|
T Consensus       381 ~R~gh~~~~~~e~SPvFlqFLDcV~Ql~~QfP~~FEFne~~L~~L~dh~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~~  460 (512)
T 2yf0_A          381 ERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPF  460 (512)
T ss_dssp             HHHTSSSCCGGGCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHTTTCSTTSCSSSHHHHHHTTHHHHSCCSHHH
T ss_pred             hhcCCCCCCcCCCCCchHHHHHHHHHHHhhCCCccccCHHHHHHHHHHhccCccCccccCCHHHHHHhCCCcCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCCCCC-CCCceeccCCCCCeeecCCCccccchhH
Q psy11382        277 MANRMEDYINPLYSPDA-HPDFIRPDLSPQNIRYTPFLTVEKNYDK  321 (328)
Q Consensus       277 ~~~~~~~f~Np~Y~~~~-~~~vl~P~~~~~~l~lW~~~Y~R~~~~~  321 (328)
                      ++++...|+||+|+|.. ..++|+|+++++++++|.++|+||+..+
T Consensus       461 ~~~~~~~f~Np~Y~~~~~~~~vl~P~~~~~~l~lW~~~y~r~~~~~  506 (512)
T 2yf0_A          461 LLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTA  506 (512)
T ss_dssp             HTTSHHHHBCTTCCCC---CCCCCCCCSSSSCCCCHHHHHHHCCC-
T ss_pred             HHhcHHhhcCcCcCCCCCCCCeeecccCCCcCeechhhhCCCCCCc
Confidence            99999999999999962 3589999999999999999999999765

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=100.00  E-value=9.6e-84  Score=654.47  Aligned_cols=280  Identities=35%  Similarity=0.603  Sum_probs=253.4

Q ss_pred             CCceeEEEEEeCceEEEEcCCC--CeeEEEecCccceEEeCCC-CCC---CCcEEEEeccccEEEEEeCCC-cchHHHHH
Q psy11382          8 RKPFVGTLHLTTTALIFQDTDC--KKETWILLMHIASIERGPL-STL---GSPLIIRCKTFLSVTFVIPRE-RECYDIYV   80 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~~~--~~e~wi~~~~I~~vek~~~-s~~---g~~L~i~CKdfr~~~f~~~~~-~~~~~v~~   80 (328)
                      .+++.|||+||||||||.+.+.  ..++|||+.+|++|||.++ ++.   .+.|+|+|||||+++|.|+++ .+|.+||+
T Consensus        29 ~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKDfr~~~f~f~~~~~~~~~v~~  108 (528)
T 1zsq_A           29 TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFE  108 (528)
T ss_dssp             TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHH
T ss_pred             CCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccCCeEEEEEecCchHHHHHHHH
Confidence            3579999999999999998543  4579999999999999864 232   357999999999999999987 56999999


Q ss_pred             HHHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCc-eecccccccCCCCCCCCCCCcccCHHHHHHhcCCCC
Q psy11382         81 TLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHI-EELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPN  159 (328)
Q Consensus        81 ~l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lyaF~~~~~~~~~~~dGW~~fd~~~Ef~R~Gv~~  159 (328)
                      +|+++++|                                .+. .+||||.|+|...   ++||++|+++.||+|||+++
T Consensus       109 ~L~~~~~p--------------------------------~~~~~~lfaF~y~~~~~---~~gw~~y~~~~E~~R~g~~~  153 (528)
T 1zsq_A          109 NLMKYAFP--------------------------------VSNNLPLFAFEYKEVFP---ENGWKLYDPLLEYRRQGIPN  153 (528)
T ss_dssp             HHHHHSCT--------------------------------TTTTCCCGGGTCCCCCS---SCGGGSCCHHHHHHHTTCSC
T ss_pred             HHHHHhcC--------------------------------Cccccceeeeecccccc---CCCceecCHHHHHHHcCCCc
Confidence            99999999                                444 4699999999874   69999999999999999999


Q ss_pred             CCeEEeeccccccccccc-------------------------c------------------------------------
Q psy11382        160 DEWCLTNLNKNYELVDIL-------------------------R------------------------------------  178 (328)
Q Consensus       160 d~WRiS~iN~~Y~lC~TY-------------------------R------------------------------------  178 (328)
                      +.||||++|++|++|+||                         |                                    
T Consensus       154 ~~WRis~vN~~y~~c~tYP~~lvVP~~i~D~~l~~~a~frs~~R~Pvl~w~h~~~~a~l~RssqP~~g~~~~r~~~DE~~  233 (528)
T 1zsq_A          154 ESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKY  233 (528)
T ss_dssp             SSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEECCBCCTTTTCCCHHHHHH
T ss_pred             ccEEEEEecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcEEEEcCCcCcccccCCCHHHHHH
Confidence            999999999999999997                         0                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy11382        179 --------------------------------------------------------------------------------  178 (328)
Q Consensus       179 --------------------------------------------------------------------------------  178 (328)
                                                                                                      
T Consensus       234 l~~i~~~~~~~~~~~i~D~rp~~~A~an~a~G~G~E~~~~Y~~~~~~f~~i~nIh~~r~S~~kL~~~~~~~~~~~~wls~  313 (528)
T 1zsq_A          234 LQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSN  313 (528)
T ss_dssp             HHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHHHHHHHHHHHHHHSSCCCGGGHHHH
T ss_pred             HHHHHHhCcccCccEEEccCchhhHHHhhhcCCcccCcccccCceEEEcCCccHHHHHHHHHHHHHHhCCCCcchhHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------Cc-ceEEeeeeecccccccc
Q psy11382        179 ------------------------------------------------------------GG-TSLIEKDWLSFGHKFTD  197 (328)
Q Consensus       179 ------------------------------------------------------------~G-~~LIEKEWl~fGH~F~~  197 (328)
                                                                                  +| ++|||||||+|||||.+
T Consensus       314 Le~s~WL~~i~~iL~~a~~ia~~l~~~~~sVLvhcsdGwDrT~ql~SLaqllLDPyyRTi~GF~~LIEKEWlsfGH~F~~  393 (528)
T 1zsq_A          314 LESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQL  393 (528)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHTTTTTCCHHH
T ss_pred             hHhcccHHHHHHHHHHHHHHHHHHHcCCceEEEECCCCccchHHHHHHHHHHcCccccHHHHHHHHHHhHHhhcCCChhh
Confidence                                                                        33 99999999999999999


Q ss_pred             ccCCCCC--CCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCcccchh
Q psy11382        198 RCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWG  275 (328)
Q Consensus       198 R~gh~~~--~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T~SlW~  275 (328)
                      ||||+..  .++|.||||+|||||||||++|||++|||||.||++|+||+|||+|||||||||+||.+.++.++|.|||+
T Consensus       394 R~gh~~~~~~~~e~SPvFlqFLDcV~Ql~~QfP~~FEFne~~L~~L~~h~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~  473 (528)
T 1zsq_A          394 RVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWS  473 (528)
T ss_dssp             HHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSSTTCSSSHHHHHHTTHHHHSCCHHH
T ss_pred             hcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHhcccccCCccccHHHHHHHhccCCCCcChHh
Confidence            9999864  46899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCCCCCCCceeccCCCCCeeecCCCccccchhHHh
Q psy11382        276 YMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKLQ  323 (328)
Q Consensus       276 ~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~~  323 (328)
                      |++++.+.|+||+|+|.. ..+|+|+++++++++|.+||+||+.+.-.
T Consensus       474 ~~~~~~~~f~Np~Y~~~~-~~vl~P~~~~~~l~lW~~~y~r~~~~~~~  520 (528)
T 1zsq_A          474 YINSQLEDFTNPLYGSYS-NHVLYPVASMRHLELWVGYYIRWNPRAAA  520 (528)
T ss_dssp             HHHTCGGGGBCTTTTSCS-SSCCCCCCSTTTCCCCHHHHTCSCC----
T ss_pred             hHhhCHHhhcCCCcCCCC-CcccCCccccCCCeehHHhhCCCCCCCCc
Confidence            999999999999999975 68999999999999999999999987543

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=100.00  E-value=1.1e-82  Score=657.42  Aligned_cols=279  Identities=35%  Similarity=0.603  Sum_probs=254.0

Q ss_pred             CCceeEEEEEeCceEEEEcCCC--CeeEEEecCccceEEeCCC-CCC---CCcEEEEeccccEEEEEeCCC-cchHHHHH
Q psy11382          8 RKPFVGTLHLTTTALIFQDTDC--KKETWILLMHIASIERGPL-STL---GSPLIIRCKTFLSVTFVIPRE-RECYDIYV   80 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~~~--~~e~wi~~~~I~~vek~~~-s~~---g~~L~i~CKdfr~~~f~~~~~-~~~~~v~~   80 (328)
                      ++++.|||+||||||||.+.+.  ..++||||.+|++|||.++ ++.   .+.|+|+|||||+++|.|+++ .+|.+||+
T Consensus       101 ~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDfR~~~f~f~~~~~~~~~v~~  180 (657)
T 1lw3_A          101 TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFE  180 (657)
T ss_dssp             TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHH
T ss_pred             CCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEEecCCcEEEEEeCCccchHHHHHH
Confidence            3579999999999999998543  4579999999999999763 233   357999999999999999987 56999999


Q ss_pred             HHHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCc-eecccccccCCCCCCCCCCCcccCHHHHHHhcCCCC
Q psy11382         81 TLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHI-EELYCFTYTSTTESPKSYGWDFFSLEQEFKRMQVPN  159 (328)
Q Consensus        81 ~l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lyaF~~~~~~~~~~~dGW~~fd~~~Ef~R~Gv~~  159 (328)
                      +|.++++|                                .+. ..||||.|+|...   ++||++|+++.||+|||+++
T Consensus       181 ~L~~~~~P--------------------------------~~~~~~lfAF~y~~~~~---~~Gw~~yd~~~E~~R~g~~~  225 (657)
T 1lw3_A          181 NLMKYAFP--------------------------------VSNNLPLFAFEYKEVFP---ENGWKLYDPLLEYRRQGIPN  225 (657)
T ss_dssp             HHHHHHSS--------------------------------GGGTCCCGGGTCCCCCS---SCGGGSCCHHHHHHHHTCSC
T ss_pred             HHHHHhCC--------------------------------Ccccccceeeccccccc---CCCceecCHHHHHHHhCCCc
Confidence            99999999                                444 4699999999874   69999999999999999999


Q ss_pred             CCeEEeeccccccccccc-------------------------c------------------------------------
Q psy11382        160 DEWCLTNLNKNYELVDIL-------------------------R------------------------------------  178 (328)
Q Consensus       160 d~WRiS~iN~~Y~lC~TY-------------------------R------------------------------------  178 (328)
                      +.||||++|++|++|+||                         |                                    
T Consensus       226 ~~WRis~vN~~y~~C~TYP~~lvVP~~isD~~L~~~a~fRs~~R~Pvlsw~h~~~~a~l~RsSQPl~G~~~~r~~eDE~l  305 (657)
T 1lw3_A          226 ESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKY  305 (657)
T ss_dssp             SSEEEECTTTTSCSCTTSCSCEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEECCBCCTTTTCCCHHHHHH
T ss_pred             ccEEEEeecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcEEEEcCCcCcccccCCCHHHHHH
Confidence            999999999999999997                         0                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy11382        179 --------------------------------------------------------------------------------  178 (328)
Q Consensus       179 --------------------------------------------------------------------------------  178 (328)
                                                                                                      
T Consensus       306 l~ai~~a~~~~~~l~I~DaRp~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~mr~S~~KL~~~c~p~~~~~~wls~  385 (657)
T 1lw3_A          306 LQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSN  385 (657)
T ss_dssp             HHHHHTTCTTCCCEEEEECSCHHHHHHHHTTTCCCCCTTTCTTEEEEECCCCCHHHHHHHHHHHHHHHSSCCCGGGHHHH
T ss_pred             HHHHHHhCcccCccEEEccCchhHHHHHhhcCCcccCcccccCceEEECCCccHHHHHHHHHHHHHHhCCCCcchhHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------Cc-ceEEeeeeecccccccc
Q psy11382        179 ------------------------------------------------------------GG-TSLIEKDWLSFGHKFTD  197 (328)
Q Consensus       179 ------------------------------------------------------------~G-~~LIEKEWl~fGH~F~~  197 (328)
                                                                                  +| ++|||||||+|||||.+
T Consensus       386 Le~S~WL~hI~~iL~~A~~ia~~l~~~~~sVLVhcsDGwDrT~qlsSLaQLlLDPyYRTi~GF~vLIEKEWlsfGH~F~~  465 (657)
T 1lw3_A          386 LESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQL  465 (657)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHTTTTTCCHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHcCCceEEEECCCCccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHhcCCChhh
Confidence                                                                        33 99999999999999999


Q ss_pred             ccCCCCC--CCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcHHHHhhhhccCCcccchh
Q psy11382        198 RCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWG  275 (328)
Q Consensus       198 R~gh~~~--~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse~eR~~~~~~~~T~SlW~  275 (328)
                      ||||+..  .++|.||||+|||||||||++|||++|||||.||++|+||+|||+|||||||||+||.+.++.++|.|||+
T Consensus       466 R~gh~~~~~~~~e~SPvFlqFLDCV~QL~~QfP~aFEFne~fL~~L~dh~yS~~FGTFL~Nse~ER~~~~v~~~T~SlWs  545 (657)
T 1lw3_A          466 RVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWS  545 (657)
T ss_dssp             HHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSSTTCSSSHHHHHHTTHHHHSCCHHH
T ss_pred             hcCCCCCCCCcCCCCCCHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHhhhcccCCccccHHHHHHHhccCCCCccHHH
Confidence            9999865  46899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCCCCCCCceeccCCCCCeeecCCCccccchhHH
Q psy11382        276 YMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNYDKL  322 (328)
Q Consensus       276 ~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~~~~  322 (328)
                      |++++...|+||+|+|.. ..+|+|++++.++++|.+||+||++..-
T Consensus       546 ~i~~~~~~f~NplY~~~~-~~vl~P~~~~~~l~lW~~~y~R~~~~~~  591 (657)
T 1lw3_A          546 YINSQLEDFTNPLYGSYS-NHVLYPVASMRHLELWVGYYIRWNPRMK  591 (657)
T ss_dssp             HHTTCTTTTBCTTTTCCC-CCCCCCCCSTTTCCCCHHHHTCCSCC--
T ss_pred             HHhhChHhhcCCCcCCCC-CceeccccccCCCEehHHHhCCCCCCCC
Confidence            999999999999999975 6899999999999999999999998654

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=96.62  E-value=0.014  Score=49.70  Aligned_cols=77  Identities=22%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             CCceeEEEEEeCceEEEEcC-CCCeeEEEecCccceEEeCCCC-CCCCcEEEEecc--------------ccEEEEEeCC
Q psy11382          8 RKPFVGTLHLTTTALIFQDT-DCKKETWILLMHIASIERGPLS-TLGSPLIIRCKT--------------FLSVTFVIPR   71 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~-~~~~e~wi~~~~I~~vek~~~s-~~g~~L~i~CKd--------------fr~~~f~~~~   71 (328)
                      .+...|+|+||+|||||.+. +....+=||+..|.++|..... .....|+++-+-              .-.++|.|..
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~  114 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKE  114 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETT
T ss_pred             CCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeeccccccCceEEEEecCCCccCCCCCcccccCcEEEEEEcC
Confidence            45689999999999999874 3345689999999999975422 122345566552              5678999986


Q ss_pred             CcchHHHHHHHHHh
Q psy11382         72 ERECYDIYVTLQKL   85 (328)
Q Consensus        72 ~~~~~~v~~~l~~l   85 (328)
                      .. +.+.+..|.+.
T Consensus       115 Gg-~~eF~~~L~~a  127 (140)
T 2hth_B          115 HG-QIEFYRRLSEE  127 (140)
T ss_dssp             SC-HHHHHHHHHHH
T ss_pred             CC-ChHHHHHHHHH
Confidence            54 36666666554

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=95.10  E-value=0.11  Score=44.50  Aligned_cols=77  Identities=16%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             CCceeEEEEEeCceEEEEcCCCC--eeEEEecCccceEEeCCCC-CCCCcEEEEecc----ccEEEEEeCCCcchHHHHH
Q psy11382          8 RKPFVGTLHLTTTALIFQDTDCK--KETWILLMHIASIERGPLS-TLGSPLIIRCKT----FLSVTFVIPRERECYDIYV   80 (328)
Q Consensus         8 ~~~~~GtL~lT~~hLiF~~~~~~--~e~wi~~~~I~~vek~~~s-~~g~~L~i~CKd----fr~~~f~~~~~~~~~~v~~   80 (328)
                      .+...|+||||+|||||.+....  ..+=+|+..|..+|..... +...-++|..+-    --.+++.|.... +.|.+.
T Consensus        48 ~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s~Ki~l~~~p~~~~~~~~KLsFk~GG-a~eF~~  126 (145)
T 2cay_A           48 LQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSD-GVLFSQ  126 (145)
T ss_dssp             TTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSCSSTTCCEEEEESSSC-CHHHHH
T ss_pred             cCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccCceEEEEecCCCCCceEEEEEEcCCC-chHHHH
Confidence            46789999999999999974322  4579999999999975321 122345556653    357788887654 366666


Q ss_pred             HHHHh
Q psy11382         81 TLQKL   85 (328)
Q Consensus        81 ~l~~l   85 (328)
                      .|++.
T Consensus       127 ~l~~a  131 (145)
T 2cay_A          127 ATERA  131 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=93.82  E-value=0.23  Score=41.72  Aligned_cols=76  Identities=14%  Similarity=0.126  Sum_probs=57.4

Q ss_pred             ceeEEEEEeCceEEEEc----CCCCee-EEEecCccceEEeCCCC--CCCCcEEEEeccccE-EEEEeCCCcchHHHHHH
Q psy11382         10 PFVGTLHLTTTALIFQD----TDCKKE-TWILLMHIASIERGPLS--TLGSPLIIRCKTFLS-VTFVIPRERECYDIYVT   81 (328)
Q Consensus        10 ~~~GtL~lT~~hLiF~~----~~~~~e-~wi~~~~I~~vek~~~s--~~g~~L~i~CKdfr~-~~f~~~~~~~~~~v~~~   81 (328)
                      .+.+..+.||.+||+.+    +..+.| .-|||..|.++.--...  ...+.|.|.-..-.. +.+.|.+..+.++++..
T Consensus        40 ~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~~~pi~~~f~k~~di~~i~k~  119 (126)
T 3hsa_A           40 MVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQHEPLVXELXRGTDVVGIQXT  119 (126)
T ss_dssp             CSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTCSSCEEEEECTTSCHHHHHHH
T ss_pred             hcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCCceEEEEeccCcccHHHHHHH
Confidence            45689999999999997    233445 48999999988643211  123577777666555 89999999999999999


Q ss_pred             HHHh
Q psy11382         82 LQKL   85 (328)
Q Consensus        82 l~~l   85 (328)
                      |.+.
T Consensus       120 La~~  123 (126)
T 3hsa_A          120 IARY  123 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9765

>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13

Probab=86.21  E-value=1.8  Score=38.68  Aligned_cols=78  Identities=13%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             ceeEEEEEeCceEEEEcC----CCCee-EEEecC--ccceEEeCCCC--CCCCcEEEEeccccEEEEEeCC--CcchHHH
Q psy11382         10 PFVGTLHLTTTALIFQDT----DCKKE-TWILLM--HIASIERGPLS--TLGSPLIIRCKTFLSVTFVIPR--ERECYDI   78 (328)
Q Consensus        10 ~~~GtL~lT~~hLiF~~~----~~~~e-~wi~~~--~I~~vek~~~s--~~g~~L~i~CKdfr~~~f~~~~--~~~~~~v   78 (328)
                      .+.-.+++||.+||+.+.    ..+.+ .=+||.  .|..+.-....  ...+.|.|.-.. ..+.+.|++  ..+.+++
T Consensus        36 ~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElki~i~~-~~~~Ief~K~~~~di~~l  114 (193)
T 3b77_A           36 SKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIKFEIGG-KHYSIDVDKKQLEHVKDL  114 (193)
T ss_dssp             CSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEEEEETT-EEEEEEEEGGGHHHHHHH
T ss_pred             ecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEEEEEcC-ceEEEEeCCcchhhHHHH
Confidence            345689999999999982    23444 368999  99988543211  223556666554 456789988  6789999


Q ss_pred             HHHHHHhcCC
Q psy11382         79 YVTLQKLSRP   88 (328)
Q Consensus        79 ~~~l~~l~~p   88 (328)
                      |..|..+|.-
T Consensus       115 yk~L~~is~~  124 (193)
T 3b77_A          115 YKALLAIAEK  124 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=83.11  E-value=6.1  Score=34.56  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=49.3

Q ss_pred             eeEEEEEeCceEEEEcCCCCeeEEEecCccc--eEEeCCCCCCCC--cEEEEecc--------------------ccEEE
Q psy11382         11 FVGTLHLTTTALIFQDTDCKKETWILLMHIA--SIERGPLSTLGS--PLIIRCKT--------------------FLSVT   66 (328)
Q Consensus        11 ~~GtL~lT~~hLiF~~~~~~~e~wi~~~~I~--~vek~~~s~~g~--~L~i~CKd--------------------fr~~~   66 (328)
                      -.||||||+-+|+|.+. .++-+-|+|+.|+  .|.|.+..-...  .+.|-.+.                    ..=++
T Consensus        42 g~GtLyVt~~~l~W~~~-~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~~~~~~~~~~~~e~~~~Dde~~~~~Eir  120 (171)
T 1zyi_A           42 GTGTLYIAESRLSWLDG-SGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNAKFGEESKESVAEEEDSDDDVEPIAEFR  120 (171)
T ss_dssp             CEEEEEEETTEEEEEET-TTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEECCCCSSCSSSCCCSCCSSCCSCSEEEEE
T ss_pred             CceEEEEEcCEEEEEcC-CCcEEEeecCeEEEEEEecCCCCCCCceEEEEEecccCccccccccccccccccccceeEEE
Confidence            47999999999999986 5667889998775  444443211111  23333321                    22255


Q ss_pred             EEeCCCcchHHHHHHHHHhcCC
Q psy11382         67 FVIPRERECYDIYVTLQKLSRP   88 (328)
Q Consensus        67 f~~~~~~~~~~v~~~l~~l~~p   88 (328)
                      |.-+.......||++|.+.+..
T Consensus       121 lvP~d~s~l~~if~Ams~Cq~L  142 (171)
T 1zyi_A          121 FVPSDKSALEAMFTAMCECQAL  142 (171)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHC
T ss_pred             EeCCCccHHHHHHHHHHHHHHc
Confidence            5545556788999999887654

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=81.37  E-value=12  Score=30.53  Aligned_cols=77  Identities=17%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             CceeEEEEEeCceEEEEcCCC-CeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCc----chHHHHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTDC-KKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRER----ECYDIYVTLQ   83 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~-~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~----~~~~v~~~l~   83 (328)
                      +...|||+|+.-|+.+..... ..-+-+++..|.....-|.+..--.|.|.-++=..++|.|.+..    |+..|=+.|+
T Consensus        18 KK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~~~a~~erd~VKd~L~   97 (108)
T 1pfj_A           18 KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQ   97 (108)
T ss_dssp             SSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCSSCTTHHHHHHHHHHH
T ss_pred             ecCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence            455699999999999997332 22244467777765544544444578888887788999998754    4455555555


Q ss_pred             Hh
Q psy11382         84 KL   85 (328)
Q Consensus        84 ~l   85 (328)
                      ++
T Consensus        98 ~~   99 (108)
T 1pfj_A           98 QL   99 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1zsqa2	387	c.45.1.3 (A:199-585) Myotubularin-related protein	1e-49
d1zsqa2	387	c.45.1.3 (A:199-585) Myotubularin-related protein	3e-08
d1zsqa1	125	b.55.1.8 (A:74-198) Myotubularin-related protein 2	6e-15

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 1e-49
 Identities = 61/134 (45%), Positives = 87/134 (64%), Gaps = 3/134 (2%)

Query: 177 LRGGTSLIEKDWLSFGHKFTDRCGHLAGDPR--EVSPVFVQFLECSWQLSVQFPQAFEFN 234
           +RG   L+EK+WLSFGH+F  R GH   +    + SPVF+QF++C WQ++ QFP AFEFN
Sbjct: 244 IRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFN 303

Query: 235 EIFLLTLQDHVTSCQFGTFVGNCEKDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAH 294
           E FL+T+ DH+ SC FGTF+ N E+ R    L + T SLW Y+ +++ED+ NPLY     
Sbjct: 304 EYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGS-YS 362

Query: 295 PDFIRPDLSPQNIR 308
              + P  S +++ 
Sbjct: 363 NHVLYPVASMRHLE 376

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 142 GWDFFSLEQEFKRMQVPNDEWCLTNLNKNYELVD 175
           GW  +    E++R  +PN+ W +T +N+ YEL D
Sbjct: 7   GWKLYDPLLEYRRQGIPNESWRITKINERYELCD 40

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 6e-15
 Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 38/129 (29%)

Query: 10  PFVGTLHLTTTALIFQDTDCKKE--TWILLMHIASIERGPLSTLGS----PLIIRCKTFL 63
              GTL +T   L F+  +          L  I  +E+   ++        L   CK   
Sbjct: 27  AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIR 86

Query: 64  SVTFVI-PRERECYDIYVTLQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIH 122
           ++ F   P  R    I+  L K + P                                 +
Sbjct: 87  NLRFAHKPEGRTRRSIFENLMKYAFPVS-------------------------------N 115

Query: 123 IEELYCFTY 131
              L+ F Y
Sbjct: 116 NLPLFAFEY 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1zsqa2	387	Myotubularin-related protein 2, C-terminal domain	100.0
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	99.86
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	96.63
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	95.74
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	95.39
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	94.96
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	87.47

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-62  Score=476.09  Aligned_cols=138  Identities=43%  Similarity=0.798  Sum_probs=132.6

Q ss_pred             ceEEeeeeeccccccccccCCCCC--CCCCCCcchhhhhhhHHHHHHhCCCCcccCHHHHHHHHHHhccCCccccccCcH
Q psy11382        181 TSLIEKDWLSFGHKFTDRCGHLAG--DPREVSPVFVQFLECSWQLSVQFPQAFEFNEIFLLTLQDHVTSCQFGTFVGNCE  258 (328)
Q Consensus       181 ~~LIEKEWl~fGH~F~~R~gh~~~--~~~e~SPvFlqFLDcV~Ql~~QfP~aFEFne~fL~~L~dh~ys~~fGTFL~Nse  258 (328)
                      ++||||||++|||||.+||||+..  ..+|.||||+|||||||||++|||++|||||.||++|+||+|||+|||||||||
T Consensus       248 ~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fgtFl~n~e  327 (387)
T d1zsqa2         248 EVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSE  327 (387)
T ss_dssp             HHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSSTTCSSSH
T ss_pred             HHHHHHHHHhcCCchhhhhcCCCCCcccCCCCCchHHHHHHHHHHHHhCCcccccCHHHHHHHHHHhccccccccccCCH
Confidence            999999999999999999999854  457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhccCCcccchhhhhcccccccCCCCCCCCCCCceeccCCCCCeeecCCCccccch
Q psy11382        259 KDRLDLRLSENTYSLWGYMANRMEDYINPLYSPDAHPDFIRPDLSPQNIRYTPFLTVEKNY  319 (328)
Q Consensus       259 ~eR~~~~~~~~T~SlW~~~~~~~~~f~Np~Y~~~~~~~vl~P~~~~~~l~lW~~~Y~R~~~  319 (328)
                      +||.+.++.++|.|||+|+.++.++|+||+|+|.. ..+|+|++++.++++|.+||+||+|
T Consensus       328 ~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~-~~~l~P~~~~~~~~~W~~~ylR~~p  387 (387)
T d1zsqa2         328 QQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS-NHVLYPVASMRHLELWVGYYIRWNP  387 (387)
T ss_dssp             HHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCS-SSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred             HHHHHhCcCCCCccHHHHHHHhHHHhcCCCCCCCC-CCeEccccCcccCeehHhhccccCC
Confidence            99999999999999999999999999999999975 7899999999999999999999986

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.5e-22  Score=164.52  Aligned_cols=93  Identities=23%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             CceeEEEEEeCceEEEEcCCC--CeeEEEecCccceEEeCCCCCC----CCcEEEEeccccEEEEEeCC-CcchHHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTDC--KKETWILLMHIASIERGPLSTL----GSPLIIRCKTFLSVTFVIPR-ERECYDIYVT   81 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~--~~e~wi~~~~I~~vek~~~s~~----g~~L~i~CKdfr~~~f~~~~-~~~~~~v~~~   81 (328)
                      +++.|||+||||||||.+.+.  ...+|||+++|++|||.+....    .++|.|+|||||+++|.|.. +++|++|+++
T Consensus        26 ~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~~~  105 (125)
T d1zsqa1          26 GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFEN  105 (125)
T ss_dssp             EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHHH
T ss_pred             CccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEeccCeEEEEEEcCCccHHHHHHHH
Confidence            578999999999999997443  3467999999999999865433    36899999999999999964 4799999999


Q ss_pred             HHHhcCCCcccccccCCCCCCCCCCcCCccCCCccccccCCceeccccccc
Q psy11382         82 LQKLSRPEPKKLRRRREPYPEPPVCKSSVIPTRPQRLLKIHIEELYCFTYT  132 (328)
Q Consensus        82 l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyaF~~~  132 (328)
                      |+++++|.                               .++++||||.|+
T Consensus       106 L~~~a~P~-------------------------------~~~~~LFAF~Yk  125 (125)
T d1zsqa1         106 LMKYAFPV-------------------------------SNNLPLFAFEYK  125 (125)
T ss_dssp             HHHHSCTT-------------------------------TTTCCCGGGTCC
T ss_pred             HHHhCcCC-------------------------------CCCcceEEEEeC
Confidence            99999992                               568899999985

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0076  Score=48.52  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             CceeEEEEEeCceEEEEcC-CCCeeEEEecCccceEEeCCCC-CCCCcEEEEec--------------cccEEEEEeCCC
Q psy11382          9 KPFVGTLHLTTTALIFQDT-DCKKETWILLMHIASIERGPLS-TLGSPLIIRCK--------------TFLSVTFVIPRE   72 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~-~~~~e~wi~~~~I~~vek~~~s-~~g~~L~i~CK--------------dfr~~~f~~~~~   72 (328)
                      .-..|+|+||+|||||.+. +....+-+|+..|..+|..... ....-+.++-+              -...+++.|...
T Consensus        32 ~~~~G~l~LTthRli~~~~~~~~~s~~lpl~~i~~~e~~~~~fg~s~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~G  111 (129)
T d2hthb1          32 KFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH  111 (129)
T ss_dssp             CCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS
T ss_pred             cccceEEEEEeceEEEecCCCCceEEEEEhHHceeeeEEcccccCCceEEEEEccCCcCCcCCCcCcCCceEEEEEECCC
Confidence            3457999999999999863 4445678999999999865321 22233444433              256789999875


Q ss_pred             cchHHHHHHHHHh
Q psy11382         73 RECYDIYVTLQKL   85 (328)
Q Consensus        73 ~~~~~v~~~l~~l   85 (328)
                       -+.+.+..|.+.
T Consensus       112 -G~~eF~~~l~~a  123 (129)
T d2hthb1         112 -GQIEFYRRLSEE  123 (129)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHH
Confidence             467777777663

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.021  Score=46.15  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             CceeEEEEEeCceEEEEcCCC--CeeEEEecCccceEEeCCC-CCCCCcEEEEec----cccEEEEEeCCCcchHHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTDC--KKETWILLMHIASIERGPL-STLGSPLIIRCK----TFLSVTFVIPRERECYDIYVT   81 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~--~~e~wi~~~~I~~vek~~~-s~~g~~L~i~CK----dfr~~~f~~~~~~~~~~v~~~   81 (328)
                      .-..|+||||+|||||.+...  ...+=+|+..|..+|-... -.+..-|+++-|    .-.++.+.|... .+.+.++.
T Consensus        41 ~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~~~ss~KI~l~l~~~~~~~~~vklsFr~g-g~~~F~~~  119 (130)
T d2caya1          41 QRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKS-DGVLFSQA  119 (130)
T ss_dssp             TCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSCSSTTCCEEEEESSS-CCHHHHHH
T ss_pred             cccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccccCCCCeEEEEeCCCCCCCCEEEEEEcCC-ChHHHHHH
Confidence            346899999999999997432  2458899999999985422 122234555443    335677888754 34555655


Q ss_pred             HHH
Q psy11382         82 LQK   84 (328)
Q Consensus        82 l~~   84 (328)
                      +++
T Consensus       120 ~~~  122 (130)
T d2caya1         120 TER  122 (130)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0093  Score=46.78  Aligned_cols=77  Identities=21%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             CCCCceeEEEEEeCceEEEEcCCC----------------CeeEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEe
Q psy11382          6 DLRKPFVGTLHLTTTALIFQDTDC----------------KKETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVI   69 (328)
Q Consensus         6 ~~~~~~~GtL~lT~~hLiF~~~~~----------------~~e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~   69 (328)
                      .+.....|+|.||+.+|+|...+.                .+..-+++..|..|-++.---+...|+|-++|=+.+=|+|
T Consensus        13 tp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~~~~~s~~~~F   92 (110)
T d1t77a2          13 APSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNF   92 (110)
T ss_dssp             CSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEETTSCEEEEEC
T ss_pred             EecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEEcCCcEEEEEe
Confidence            356778999999999999986432                1223567888888876643334568999999999999999


Q ss_pred             CCCcchHHHHHHH
Q psy11382         70 PRERECYDIYVTL   82 (328)
Q Consensus        70 ~~~~~~~~v~~~l   82 (328)
                      ++..++.+|+..|
T Consensus        93 ~~~~~~~~v~~~l  105 (110)
T d1t77a2          93 PDPATVKKVVNFL  105 (110)
T ss_dssp             SSHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHhc
Confidence            9998899998876

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.12  Score=40.35  Aligned_cols=77  Identities=17%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             CceeEEEEEeCceEEEEcCCCCe-eEEEecCccceEEeCCCCCCCCcEEEEeccccEEEEEeCCCc----chHHHHHHHH
Q psy11382          9 KPFVGTLHLTTTALIFQDTDCKK-ETWILLMHIASIERGPLSTLGSPLIIRCKTFLSVTFVIPRER----ECYDIYVTLQ   83 (328)
Q Consensus         9 ~~~~GtL~lT~~hLiF~~~~~~~-e~wi~~~~I~~vek~~~s~~g~~L~i~CKdfr~~~f~~~~~~----~~~~v~~~l~   83 (328)
                      +...|||+|+.-||.|...+... -+-+++..|....--|.++.--.|.|.-||=..+.|.|....    ++.+|=+.|+
T Consensus        18 KK~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~~s~~F~Ftn~~~~~~~Rd~iK~~Lq   97 (108)
T d2rnrb1          18 KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQ   97 (108)
T ss_dssp             SSCEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTSCEEEEEECCTTTHHHHHHHHHHHHH
T ss_pred             ecCCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCcccceeEEEEeCCCeEEEEECChHHHHHHHHHHHHHHH
Confidence            46789999999999999855332 478899999877655544444579999999999999998653    3466777777


Q ss_pred             Hh
Q psy11382         84 KL   85 (328)
Q Consensus        84 ~l   85 (328)
                      ++
T Consensus        98 ~~   99 (108)
T d2rnrb1          98 QL   99 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=87.47  E-value=1.2  Score=34.78  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=53.0

Q ss_pred             ceeEEEEEeCceEEEEc----CCCCeeE-EEecCccceEEeCCCCC--CCCcEEEEecccc-EEEEEeCCCcchHHHHHH
Q psy11382         10 PFVGTLHLTTTALIFQD----TDCKKET-WILLMHIASIERGPLST--LGSPLIIRCKTFL-SVTFVIPRERECYDIYVT   81 (328)
Q Consensus        10 ~~~GtL~lT~~hLiF~~----~~~~~e~-wi~~~~I~~vek~~~s~--~g~~L~i~CKdfr-~~~f~~~~~~~~~~v~~~   81 (328)
                      .+....+.||.|||+.+    +..+.++ -|||..|..+.-....+  ..+.|.|--..-. .+.+.|.+..+..+|+..
T Consensus        31 ~~rD~~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEtAGtfD~DsElki~~~~~~~~i~~ef~~~~di~~i~~~  110 (116)
T d3dcxa1          31 VIRDMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWISGQKDPLVKELKKGTDVVGIQKT  110 (116)
T ss_dssp             ETTEEEEEESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEECCSSTTSCEEEEEEETTCSSCEEEEECBTSCHHHHHHH
T ss_pred             eecceEEEecceEEEEeccccccceEEEEEEehhHeEEEEEEeCccccCcccEEEEEecCceEEEEEeCCccCHHHHHHH
Confidence            34567889999999997    2344555 69999999887543221  1245555543332 367899999999999998


Q ss_pred             HHHh
Q psy11382         82 LQKL   85 (328)
Q Consensus        82 l~~l   85 (328)
                      |.+.
T Consensus       111 La~~  114 (116)
T d3dcxa1         111 IANF  114 (116)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764