Psyllid ID: psy11384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEGTVTAMVLSSQNQREKEDRIGESHLFK
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEcccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHccHHccccccEEEEEEEEEEEEHHHHHHEEcccHHHHccccccccccccccccccccEEEEEEccHcHHHHHcccccccccc
Coil and Loop (DISEMBL)
mtckrrnggrskhgrghvnpvrctncarcvpkdkAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSkvvrnrsksdrrirtppqrnfprsvslteGTVTAMVLSSqnqrekedrigeshlfk
Flexible Loop (DISEMBL)
mtckrrnggrskhgrghvnpvrctncarcvpkdkaiKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHskvvrnrsksdrrirtppqrnfprsvsltegTVTAmvlssqnqrekedrigeshlfk
Low Complexity Region (SEG)
MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEGTVTAMVLSSQNQREKEDRIGESHLFK
Disordered region (IsUnstruct)
*****************VNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVV*****************************************************
Disordered Region (DISOPRED)
***K**************NPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVVR*************************************************L**
Disordered Region (DISEMBL)
***************GHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKV***********RTPPQRNFPRSVSLTEGTVTAMVL*******************
Disordered Region (DISPRO)
***************GHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVVRNRSKS*****TPPQRNFPRSVSLTEGTVTAMVL*******************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEGTVTAMVLSSQNQREKEDRIGESHLFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
P13008	114	40S ribosomal protein S26	yes	N/A	0.781	0.938	0.841	2e-47
Q9GT45	115	40S ribosomal protein S26	yes	N/A	0.781	0.930	0.841	5e-47
P62856	115	40S ribosomal protein S26	yes	N/A	0.729	0.869	0.81	8e-42
P49171	115	40S ribosomal protein S26	yes	N/A	0.729	0.869	0.81	8e-42
P62855	115	40S ribosomal protein S26	yes	N/A	0.729	0.869	0.81	8e-42
P61251	115	40S ribosomal protein S26	N/A	N/A	0.729	0.869	0.81	8e-42
P62854	115	40S ribosomal protein S26	yes	N/A	0.729	0.869	0.81	8e-42
Q56JV1	115	40S ribosomal protein S26	yes	N/A	0.729	0.869	0.81	8e-42
P30742	115	40S ribosomal protein S26	N/A	N/A	0.729	0.869	0.8	2e-41
Q6Q312	115	40S ribosomal protein S26	N/A	N/A	0.729	0.869	0.8	2e-41

>sp|P13008|RS26_DROME 40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 97/107 (90%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRNGGR+KH RGHV PVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS + 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVS 107
           SY LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP R+FP+ ++
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMA 107

Drosophila melanogaster (taxid: 7227)

>sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 96/107 (89%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRNGGR KH RGHV  VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI++AS Y 
Sbjct: 1   MTKKRRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYS 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVS 107
           SY LPKLYAKLHYCVSCAIHSKVVRNRSK  RRIRTPPQR+FP+ ++
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPKDMN 107

Anopheles gambiae (taxid: 7165)

>sp|P62856|RS26_RAT 40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Rattus norvegicus (taxid: 10116)

>sp|P49171|RS26_PIG 40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Sus scrofa (taxid: 9823)

>sp|P62855|RS26_MOUSE 40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Mus musculus (taxid: 10090)

>sp|P61251|RS26_MACFA 40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Macaca fascicularis (taxid: 9541)

>sp|P62854|RS26_HUMAN 40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Homo sapiens (taxid: 9606)

>sp|Q56JV1|RS26_BOVIN 40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Bos taurus (taxid: 9913)

>sp|P30742|RS26_CRICR 40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 88/100 (88%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY +LHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVELHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Cricetus cricetus (taxid: 10034)

>sp|Q6Q312|RS26_SHEEP 40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 87/100 (87%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EA  + 
Sbjct: 1   MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
           +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R
Sbjct: 61  AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR 100

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
307172620	114	40S ribosomal protein S26 [Camponotus fl	0.773	0.929	0.943	6e-53
307208449	117	40S ribosomal protein S26 [Harpegnathos	0.773	0.905	0.943	1e-52
332017258	133	40S ribosomal protein S26 [Acromyrmex ec	0.795	0.819	0.908	1e-52
342905901	116	ribosomal protein S26 [Rhodnius prolixus	0.810	0.956	0.891	1e-51
328787488	114	PREDICTED: 40S ribosomal protein S26 [Ap	0.773	0.929	0.915	2e-51
340723089	114	PREDICTED: 40S ribosomal protein S26-lik	0.773	0.929	0.915	2e-51
242020294	116	40S ribosomal protein S26, putative [Ped	0.773	0.913	0.924	3e-51
149898929	116	putative ribosomal protein S26 [Triatoma	0.810	0.956	0.882	4e-51
187123196	118	ribosomal protein S26 [Acyrthosiphon pis	0.810	0.940	0.882	6e-50
69608522	115	ribosomal protein S26e [Sphaerius sp. AP	0.781	0.930	0.897	8e-50

>gi|307172620|gb|EFN63979.1| 40S ribosomal protein S26 [Camponotus floridanus]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 104/106 (98%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGR+KHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS+YQ
Sbjct: 1   MTCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASFYQ 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
           SYQLPKLYAKLHYCVSCAIHSKVVRNRSK+DRRIRTPP RNFPR +
Sbjct: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPVRNFPRDL 106

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208449|gb|EFN85816.1| 40S ribosomal protein S26 [Harpegnathos saltator]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 103/106 (97%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
            TCKRRNGGR+KHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ
Sbjct: 4   QTCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 63

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
           SYQLPKLYAKLHYCVSCAIHSKVVRNRSK+DRRIRTPP RNFPR +
Sbjct: 64  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPVRNFPRDL 109

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017258|gb|EGI58036.1| 40S ribosomal protein S26 [Acromyrmex echinatior]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/109 (90%), Positives = 104/109 (95%)

Query: 2   TCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQS 61
           TCKRRNGGR+KHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS+YQS
Sbjct: 23  TCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASFYQS 82

Query: 62  YQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTE 110
           YQLPKLYAKLHYCVSCAIHSKVVRNRSK+DRRIRTPP RNFPR +   +
Sbjct: 83  YQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPVRNFPRVIVFIK 131

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342905901|gb|AEL79234.1| ribosomal protein S26 [Rhodnius prolixus] gi|344190601|gb|AEM97985.1| putative ribosomal protein S26 [Dipetalogaster maximus]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 103/111 (92%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGRSKHGRGHV PVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIT+AS Y 
Sbjct: 1   MTCKRRNGGRSKHGRGHVQPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITDASVYN 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEG 111
           SYQLPKLYAKLHYCVSCAIHSKVVRNRSK++RRIRTPPQRNFPR +    G
Sbjct: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKAERRIRTPPQRNFPRDMMRQGG 111

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787488|ref|XP_001122510.2| PREDICTED: 40S ribosomal protein S26 [Apis mellifera] gi|380022827|ref|XP_003695237.1| PREDICTED: 40S ribosomal protein S26-like [Apis florea]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 103/106 (97%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGR+KHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS+Y 
Sbjct: 1   MTCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASFYS 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
           +YQLPKLYAKLHYCVSCAIHSKVVRNRSK++RRIRTPP RNFPR +
Sbjct: 61  AYQLPKLYAKLHYCVSCAIHSKVVRNRSKANRRIRTPPVRNFPRDL 106

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723089|ref|XP_003399930.1| PREDICTED: 40S ribosomal protein S26-like [Bombus terrestris] gi|383858848|ref|XP_003704911.1| PREDICTED: 40S ribosomal protein S26-like [Megachile rotundata]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 103/106 (97%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGR+KHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS+Y 
Sbjct: 1   MTCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASFYS 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
           +YQLPKLYAKLHYCVSCAIHSKVVRNRSK++RRIRTPP RNFPR +
Sbjct: 61  AYQLPKLYAKLHYCVSCAIHSKVVRNRSKANRRIRTPPVRNFPRDL 106

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020294|ref|XP_002430590.1| 40S ribosomal protein S26, putative [Pediculus humanus corporis] gi|212515762|gb|EEB17852.1| 40S ribosomal protein S26, putative [Pediculus humanus corporis]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/106 (92%), Positives = 101/106 (95%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS Y 
Sbjct: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASVYP 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
           SYQLPK+YAKLHYCVSCAIHSKVVRNRSK+DRR+R PP RNFPR V
Sbjct: 61  SYQLPKIYAKLHYCVSCAIHSKVVRNRSKADRRLRAPPARNFPRDV 106

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898929|gb|ABR27979.1| putative ribosomal protein S26 [Triatoma infestans]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/111 (88%), Positives = 102/111 (91%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGRSKHGRGHV PVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIT+AS Y 
Sbjct: 1   MTCKRRNGGRSKHGRGHVQPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITDASVYN 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEG 111
           SYQLPKLY KLHYCVSCAIHSKVVRNRSK++RRIRTPPQRNFPR +    G
Sbjct: 61  SYQLPKLYVKLHYCVSCAIHSKVVRNRSKAERRIRTPPQRNFPRDMMRQGG 111

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187123196|ref|NP_001119699.1| ribosomal protein S26 [Acyrthosiphon pisum] gi|89473700|gb|ABD72662.1| putative ribosomal protein S26 [Acyrthosiphon pisum] gi|239799338|dbj|BAH70595.1| ACYPI000091 [Acyrthosiphon pisum]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/111 (88%), Positives = 102/111 (91%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRNGGRSKHGRGHV PVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIT+AS Y 
Sbjct: 1   MTRKRRNGGRSKHGRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITDASVYT 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVSLTEG 111
           SYQLPKLYAKLHYCVSCAIHSKVVRNRSK+DRRIRTPP RNFPR  +  +G
Sbjct: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPSRNFPRGDNNRQG 111

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|69608522|emb|CAJ01871.1| ribosomal protein S26e [Sphaerius sp. APV-2005]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/107 (89%), Positives = 100/107 (93%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MTCKRRNGGRSKHGRGHV PVRCTNCARCVPKDKAIKKFVIRN+VEAAAVRDI +AS YQ
Sbjct: 1   MTCKRRNGGRSKHGRGHVKPVRCTNCARCVPKDKAIKKFVIRNMVEAAAVRDIQDASVYQ 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVS 107
           +Y LPKLYAKLHYCVSCAIHSKVVRNRSK  RRIRTPPQRNFPR V+
Sbjct: 61  TYTLPKLYAKLHYCVSCAIHSKVVRNRSKEARRIRTPPQRNFPRDVN 107

Source: Sphaerius sp. APV-2005

Species: Sphaerius sp. APV-2005

Genus: Sphaerius

Family: Sphaeriusidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0261597	114	RpS26 "Ribosomal protein S26"	0.781	0.938	0.841	1e-45
ZFIN|ZDB-GENE-030131-8606	119	rps26 "ribosomal protein S26"	0.751	0.865	0.805	3.6e-41
ZFIN|ZDB-GENE-040426-1706	115	rps26l "ribosomal protein S26,	0.751	0.895	0.805	3.6e-41
UNIPROTKB|J9P4R8	121	RPS26 "Uncharacterized protein	0.773	0.876	0.785	5.9e-41
UNIPROTKB|Q56JV1	115	RPS26 "40S ribosomal protein S	0.751	0.895	0.796	7.5e-41
UNIPROTKB|P62854	115	RPS26 "40S ribosomal protein S	0.751	0.895	0.796	7.5e-41
UNIPROTKB|P49171	115	RPS26 "40S ribosomal protein S	0.751	0.895	0.796	7.5e-41
RGD|621044	115	Rps26 "ribosomal protein S26"	0.751	0.895	0.796	7.5e-41
UNIPROTKB|F8VZW7	115	LOC100996747 "Protein LOC10099	0.751	0.895	0.786	2e-40
UNIPROTKB|F1MB60	115	RPS26 "40S ribosomal protein S	0.744	0.886	0.794	2.6e-40

FB|FBgn0261597 RpS26 "Ribosomal protein S26" [Drosophila melanogaster (taxid:7227)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 90/107 (84%), Positives = 97/107 (90%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRNGGR+KH RGHV PVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS + 
Sbjct:     1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVS 107
             SY LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP R+FP+ ++
Sbjct:    61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMA 107

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=NAS

ZFIN|ZDB-GENE-030131-8606 rps26 "ribosomal protein S26" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 83/103 (80%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             SY LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 SYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-040426-1706 rps26l "ribosomal protein S26, like" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 83/103 (80%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             SY LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 SYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P4R8 RPS26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 84/107 (78%), Positives = 92/107 (85%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSVS 107
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R F  +VS
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPR-FRPAVS 106

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56JV1 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 82/103 (79%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62854 RPS26 "40S ribosomal protein S26" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 82/103 (79%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P49171 RPS26 "40S ribosomal protein S26" [Sus scrofa (taxid:9823)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 82/103 (79%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|621044 Rps26 "ribosomal protein S26" [Rattus norvegicus (taxid:10116)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 82/103 (79%), Positives = 89/103 (86%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0003674 "molecular_function" evidence=ND

GO:0003729 "mRNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0033119 "negative regulation of RNA splicing" evidence=ISO

UNIPROTKB|F8VZW7 LOC100996747 "Protein LOC100996747" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 81/103 (78%), Positives = 88/103 (85%)

Query:     1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
             MT KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+E S + 
Sbjct:     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEVSVFD 60

Query:    61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             +Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    61 AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1MB60 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 81/102 (79%), Positives = 88/102 (86%)

Query:     2 TCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQS 61
             T KRRN GR+K GRGHV P+RCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+EAS + +
Sbjct:     2 TKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDA 61

Query:    62 YQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFP 103
             Y LPKLY KLHYCVSCAIHSKVVRNRS+  R+ RTPP R  P
Sbjct:    62 YVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRP 103

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27085	RS26_OCTVU	No assigned EC number	0.7766	0.7518	0.8110	N/A	N/A
P62855	RS26_MOUSE	No assigned EC number	0.81	0.7299	0.8695	yes	N/A
P62854	RS26_HUMAN	No assigned EC number	0.81	0.7299	0.8695	yes	N/A
P62856	RS26_RAT	No assigned EC number	0.81	0.7299	0.8695	yes	N/A
Q9GT45	RS26_ANOGA	No assigned EC number	0.8411	0.7810	0.9304	yes	N/A
P49206	RS261_ARATH	No assigned EC number	0.72	0.7299	0.7633	yes	N/A
Q54TL8	RS26_DICDI	No assigned EC number	0.6274	0.7299	0.8928	yes	N/A
P61251	RS26_MACFA	No assigned EC number	0.81	0.7299	0.8695	N/A	N/A
Q8LPJ7	RS262_ARATH	No assigned EC number	0.72	0.7299	0.7518	yes	N/A
P41959	RS26_BRUPA	No assigned EC number	0.8072	0.6058	1.0	N/A	N/A
P39938	RS26A_YEAST	No assigned EC number	0.67	0.7299	0.8403	yes	N/A
P39939	RS26B_YEAST	No assigned EC number	0.67	0.7299	0.8403	yes	N/A
Q5JNZ5	RS26L_HUMAN	No assigned EC number	0.75	0.7299	0.8695	no	N/A
Q9LYK9	RS263_ARATH	No assigned EC number	0.71	0.7299	0.7692	yes	N/A
Q8SRN2	RS26_ENCCU	No assigned EC number	0.4395	0.6642	0.8666	yes	N/A
Q9UTG4	RS26B_SCHPO	No assigned EC number	0.71	0.7299	0.8403	yes	N/A
P49171	RS26_PIG	No assigned EC number	0.81	0.7299	0.8695	yes	N/A
O45499	RS26_CAEEL	No assigned EC number	0.74	0.7299	0.8547	yes	N/A
P13008	RS26_DROME	No assigned EC number	0.8411	0.7810	0.9385	yes	N/A
P49216	RS26_ORYSJ	No assigned EC number	0.6941	0.6204	0.6390	yes	N/A
P30742	RS26_CRICR	No assigned EC number	0.8	0.7299	0.8695	N/A	N/A
Q56JV1	RS26_BOVIN	No assigned EC number	0.81	0.7299	0.8695	yes	N/A
Q6Q312	RS26_SHEEP	No assigned EC number	0.8	0.7299	0.8695	N/A	N/A
P21772	RS26_NEUCR	No assigned EC number	0.5798	0.8394	0.9663	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
pfam01283	113	pfam01283, Ribosomal_S26e, Ribosomal protein S26e	4e-61
PTZ00172	108	PTZ00172, PTZ00172, 40S ribosomal protein S26; Pro	3e-54
PLN00186	109	PLN00186, PLN00186, ribosomal protein S26; Provisi	2e-51
COG4830	108	COG4830, RPS26B, Ribosomal protein S26 [Translatio	4e-39
PRK09335	95	PRK09335, PRK09335, 30S ribosomal protein S26e; Pr	1e-15

>gnl|CDD|216410 pfam01283, Ribosomal_S26e, Ribosomal protein S26e

 Score =  183 bits (466), Expect = 4e-61
 Identities = 77/106 (72%), Positives = 85/106 (80%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           M  KRRN GRSK  RGHV PVRCTNC RCVPKDKAIK+FV+RNIVEAAA RD++EAS Y+
Sbjct: 1   MPKKRRNNGRSKKNRGHVKPVRCTNCGRCVPKDKAIKRFVVRNIVEAAAARDLSEASVYE 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPRSV 106
            Y LPKLY KL YCVSCAIHSK+VR RS+ DR+IRTPP R   R  
Sbjct: 61  GYALPKLYVKLQYCVSCAIHSKIVRVRSREDRKIRTPPPRFRRRKD 106

Length = 113

>gnl|CDD|185497 PTZ00172, PTZ00172, 40S ribosomal protein S26; Provisional

 Score =  165 bits (420), Expect = 3e-54
 Identities = 78/102 (76%), Positives = 87/102 (85%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRN GRSKHGRGHV PVRC+NC RCVPKDKAIK+FV+RNIV+AA+VRDI EAS Y 
Sbjct: 1   MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYY 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNF 102
            Y LPKLY K  YCVSCAIHS+VVR RS+ DR+IRTPP+R F
Sbjct: 61  GYPLPKLYMKQQYCVSCAIHSRVVRVRSREDRKIRTPPKRPF 102

Length = 108

>gnl|CDD|215093 PLN00186, PLN00186, ribosomal protein S26; Provisional

 Score =  157 bits (400), Expect = 2e-51
 Identities = 72/104 (69%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           MT KRRNGGR+KHGRGHV  +RC+NC +CVPKDKAIK+F++RNIVE AA+RD+ EA  Y 
Sbjct: 1   MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYD 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPR 104
            Y LPKLYAK+ YC+SCAIHS+VVR RS+ +RRIR PP R F R
Sbjct: 61  GYTLPKLYAKVQYCISCAIHSRVVRVRSRENRRIREPPPR-FRR 103

Length = 109

>gnl|CDD|227167 COG4830, RPS26B, Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

 Score =  127 bits (320), Expect = 4e-39
 Identities = 62/101 (61%), Positives = 76/101 (75%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           M  KRRN GR+K GRGHV  VRC NC + VPKDKAIK+  IR+ VEAAA RD++EAS Y 
Sbjct: 1   MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYS 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRN 101
            Y +PK Y KL YCVSCAIH+++VR RS+ +R+IR P  R+
Sbjct: 61  EYAVPKTYNKLQYCVSCAIHARIVRVRSREERKIRAPFNRD 101

Length = 108

>gnl|CDD|181785 PRK09335, PRK09335, 30S ribosomal protein S26e; Provisional

 Score = 67.0 bits (164), Expect = 1e-15
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 1  MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
          M  KR N GR K  +GHV  V+C NC R VP+DKA+    + + V+    +++ +     
Sbjct: 1  MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGAI- 59

Query: 61 SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQ 99
             + +      YCV+CA+H  +++ R + +R+ + P +
Sbjct: 60 ---IARYPVTKCYCVNCAVHLGIIKIRPEEERKKKAPLR 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PLN00186	109	ribosomal protein S26; Provisional	100.0
PF01283	113	Ribosomal_S26e: Ribosomal protein S26e; InterPro:	100.0
PTZ00172	108	40S ribosomal protein S26; Provisional	100.0
PRK09335	95	30S ribosomal protein S26e; Provisional	100.0
KOG1768|consensus	115		100.0
COG4830	108	RPS26B Ribosomal protein S26 [Translation, ribosom	100.0

>PLN00186 ribosomal protein S26; Provisional

Probab=100.00  E-value=1.3e-63  Score=371.71  Aligned_cols=105  Identities=68%  Similarity=1.199  Sum_probs=103.2

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+|||||||+|+|||||++|+|+|||+|||||||||+|+|+||||+||+|||+||+||++|.|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~vy~~y~lPKly~K~~YCVSCAIH   80 (109)
T PLN00186          1 MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYDGYTLPKLYAKVQYCISCAIH   80 (109)
T ss_pred             CCcccccCCCCCCCCCCCcceeeCCCcccccccceEEEEecccCccHHHHHHHHhhhcccccccchhhhceEEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCCCCCCCCCC
Q psy11384         81 SKVVRNRSKSDRRIRTPPQRNFPRS  105 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp~~~~~~~  105 (137)
                      ++|||+||+|+||+|+||++|++..
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~~  105 (109)
T PLN00186         81 SRVVRVRSRENRRIREPPPRFRRRK  105 (109)
T ss_pred             cceeecCChHHccccCCCccccccc
Confidence            9999999999999999999998754

>PF01283 Ribosomal_S26e: Ribosomal protein S26e; InterPro: IPR000892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.6e-64  Score=375.25  Aligned_cols=110  Identities=73%  Similarity=1.160  Sum_probs=73.0

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+|||||||+|+|||||++|+|+|||+|||||||||+|+|+||||++++|||+||+||++|+|||||+|+|||||||||
T Consensus         1 M~~KRrN~Gr~KkgrGhv~~V~C~nCgr~vPKDKAIkrf~i~niVeaaa~rdi~~a~v~~~y~lPKlyvK~~YCvSCAIH   80 (113)
T PF01283_consen    1 MTKKRRNNGRSKKGRGHVQPVRCDNCGRCVPKDKAIKRFVIRNIVEAAAVRDISEASVYDAYVLPKLYVKLYYCVSCAIH   80 (113)
T ss_dssp             -----TTTTSS-SSSS---EEE-TTTB-EEECCCSEEEEEEEESS-CCCHHHHHHCB-SSS--S-EEEEEEEE-CHHHHH
T ss_pred             CCcccccCCCCCCCCCCCcCEeeCcccccCcCCceEEEEEccCCccHHHHHHHhhcceeeecccccceeEEEEeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCCCCCCCCCCCCCCc
Q psy11384         81 SKVVRNRSKSDRRIRTPPQRNFPRSVSLTE  110 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp~~~~~~~~~~~~  110 (137)
                      ++|||+||+|+||+|+||++|++......+
T Consensus        81 ~~IVr~Rs~e~RK~r~~p~~~~~~~~~~~~  110 (113)
T PF01283_consen   81 SKIVRVRSREERKDRTPPPRFRPRKQGQKP  110 (113)
T ss_dssp             TTSS----TCCCC--S--------------
T ss_pred             ccccccCChHHccccCCCCcCCcccccccc
Confidence            999999999999999999999987665543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. One of these families, the S26E family, includes mammalian S26 []; Octopus S26 []; Drosophila S26 (DS31) []; plant cytoplasmic S26; and fungal S26 []. These proteins have 114 to 127 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_a 3U5C_a 2XZM_5 2XZN_5.

>PTZ00172 40S ribosomal protein S26; Provisional

Probab=100.00  E-value=3.7e-63  Score=368.78  Aligned_cols=104  Identities=75%  Similarity=1.270  Sum_probs=101.6

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+|||||||+|+|||||++|+|+|||+|||||||||+|+|+||||+||++||+||+||++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~v~~~y~lPKly~k~~YCVSCAIH   80 (108)
T PTZ00172          1 MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCAIH   80 (108)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCccccccccceEEEEeccCCccHHHHHHHHHhhchhccccccceeeeEEeeehhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCCCCCCCCC
Q psy11384         81 SKVVRNRSKSDRRIRTPPQRNFPR  104 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp~~~~~~  104 (137)
                      ++|||+||+|+||+|+||++|...
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~  104 (108)
T PTZ00172         81 SRVVRVRSREDRKIRTPPKRPFRP  104 (108)
T ss_pred             CCeeecCChHHccccCCCCCCCCC
Confidence            999999999999999999887543

>PRK09335 30S ribosomal protein S26e; Provisional

Probab=100.00  E-value=1.5e-57  Score=332.53  Aligned_cols=94  Identities=32%  Similarity=0.631  Sum_probs=92.2

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+||+||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+++++||+||++|    |||||+|+|||||||||
T Consensus         1 M~kKRrn~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~i~n~Ve~a~~rdl~~a~~~----lpk~~~k~~YCvSCAiH   76 (95)
T PRK09335          1 MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGAI----IARYPVTKCYCVNCAVH   76 (95)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCCCCcCcCCceEEEEEecCCCCHHHHHHHHhCcee----eeeeeeeeEEechhhhh
Confidence            99999999999999999999999999999999999999999999999999999999887    99999999999999999


Q ss_pred             cCcccccCccccccCCCC
Q psy11384         81 SKVVRNRSKSDRRIRTPP   98 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp   98 (137)
                      ++|||+||+|+||+|+|.
T Consensus        77 ~~IVrvRs~e~Rk~r~~~   94 (95)
T PRK09335         77 LGIIKIRPEEERKKKAPL   94 (95)
T ss_pred             ccccccCChHHcccccCC
Confidence            999999999999999864

>KOG1768|consensus

Probab=100.00  E-value=2e-55  Score=330.15  Aligned_cols=111  Identities=75%  Similarity=1.194  Sum_probs=107.3

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+||+|+|++|+|+||+.+|+|+||++|||||||||+|+|+||||++++|||+|||||++|+|||||+|||||||||||
T Consensus         1 m~~kr~~~gr~k~~~g~v~~i~c~~c~~~~~kdKaIk~f~i~niVEaaavrdiseasv~d~y~~pKly~Klhycvscaih   80 (115)
T KOG1768|consen    1 MTKKRRNAGRNKKGRGHVIPIRCTNCGRCMPKDKAIKRFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH   80 (115)
T ss_pred             CCcccccCCCCCCCCcceeeeeeccccccchHHHHHHHHHHHHHHHHHHhhhhhhheeccccccccccceeeeeEeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCCCCCCCCCCCCCCcc
Q psy11384         81 SKVVRNRSKSDRRIRTPPQRNFPRSVSLTEG  111 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp~~~~~~~~~~~~~  111 (137)
                      ++|||+||+|.||+|+||++|.+++++.++.
T Consensus        81 skVvR~rS~e~rrir~pp~rf~~~~~~~~~~  111 (115)
T KOG1768|consen   81 SKVVRVRSREARRIRTPPPRFSPRAPSLRPP  111 (115)
T ss_pred             eeeeccchhhhhcccCCCcccCccccccCCC
Confidence            9999999999999999999999877765543

>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-52  Score=308.65  Aligned_cols=97  Identities=63%  Similarity=1.074  Sum_probs=96.7

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      |||||+||||+|+||||+.+|+|+|||..||||||||+|.|+|+||+|+++||++|+||+.|.+||+|.|++||||||||
T Consensus         1 mpkkR~N~GR~K~~rGhv~~v~CdnCg~~vPkdKAikr~~i~s~Ve~a~~rdL~~asIy~~y~vpk~~~k~qyCVsCAih   80 (108)
T COG4830           1 MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYSEYAVPKTYNKLQYCVSCAIH   80 (108)
T ss_pred             CcchhhhcCCCCCCCCCccceeeccccccCCccceeeEeeccCcccHHHHHHHhhceeeeeeeccccccceeeeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCC
Q psy11384         81 SKVVRNRSKSDRRIRTP   97 (137)
Q Consensus        81 skVVRvRS~e~RK~R~p   97 (137)
                      ++|||+||+|+||++.|
T Consensus        81 ~~IvrVRSre~RK~r~p   97 (108)
T COG4830          81 ARIVRVRSREERKIRAP   97 (108)
T ss_pred             eeEEEEecchhhhhcCC
Confidence            99999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
3u5c_a	119	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-35
3zey_V	111	High-resolution Cryo-electron Microscopy Structure		1e-22
2xzm_5	119	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-22

>pdb|3U5C|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 119

Iteration: 1
 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 80/100 (80%)
Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           M  KR + GR+K GRGHV PVRC NC++ +PKDKAIK+  IRNIVEAAAVRD++EAS Y 
Sbjct: 1   MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYP 60
Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQR 100
            Y LPK Y KLHYCVSCAIH+++VR RS+ DR+ R PPQR
Sbjct: 61  EYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQR 100

>pdb|3ZEY|V Chain V, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 111

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Query: 1  MTCKRRNGGRSKH--GRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEAS- 57
          MT KRRN GR+K    RG V PV C NC+R VPKDK++ +FV+R +++ A+ RD+ EAS 
Sbjct: 1  MTTKRRNHGRAKPPCSRGRVRPVHCFNCSRLVPKDKSVGRFVVRRMLDQASARDVAEASL 60
Query: 58 -YYQSYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIR 95
           Y   + +PKLY K  YC++CAIHS+ VR R   DR+ R
Sbjct: 61 IYGSGFPMPKLYMKQRYCIACAIHSRTVRARPVEDRKRR 99

>pdb|2XZM|5 Chain 5, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 119

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 1  MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
          M  KRRN GRS+  RGH   V CTNC R V KDKA+K++ +R++V+ ++ RDI +   ++
Sbjct: 1  MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFE 60
Query: 61 SYQ--LPKLYAKLHYCVSCAIHSKVVRNRSKSD 91
          + +  +PKLY KL YC+SCAIHS+VVR R   D
Sbjct: 61 NEKQGIPKLYVKLQYCISCAIHSRVVRVRCAED 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	1e-48
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	7e-46

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  151 bits (382), Expect = 1e-48
 Identities = 7/104 (6%), Positives = 18/104 (17%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           M+         +  +  +               +        + V    V    E     
Sbjct: 1   MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA 60

Query: 61  SYQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPR 104
           +  +  +          +           +     TP    F  
Sbjct: 61  ARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTP 104

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5 Length = 119

 Score =  144 bits (363), Expect = 7e-46
 Identities = 55/106 (51%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ 60
           M  KRRN GRS+  RGH   V CTNC R V KDKA+K++ +R++V+ ++ RDI +   ++
Sbjct: 1   MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFE 60

Query: 61  S--YQLPKLYAKLHYCVSCAIHSKVVRNRSKSDRRIRTPPQRNFPR 104
           +    +PKLY KL YC+SCAIHS+VVR R   DRRIR PP RN   
Sbjct: 61  NEKQGIPKLYVKLQYCISCAIHSRVVRVRCAEDRRIRRPPIRNRKP 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3u5c_a	119	40S ribosomal protein S26-A, 40S ribosomal protein	100.0
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	100.0

>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a

Probab=100.00  E-value=4.4e-67  Score=394.04  Aligned_cols=112  Identities=60%  Similarity=1.012  Sum_probs=96.9

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhccccccccceeeEeEEEeeeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQSYQLPKLYAKLHYCVSCAIH   80 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~~y~lPKlyvKl~YCVSCAIH   80 (137)
                      ||+|||||||+|+|||||++|+|+|||+|||||||||+|+|+||||+||+|||+|||||++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaavRDi~easv~~~y~lPKlyvKl~YCVSCAIH   80 (119)
T 3u5c_a            1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIH   80 (119)
T ss_dssp             -CCCCSSTTSCCCSCSCCCEEECTTTCCEEEGGGSCEEEEEECSSCSSTHHHHHHTCCSSSCCCCCEEEEEECCSHHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeccccccccccceeeEEeCcCcccHHHHHHHHhccchhhccccceeEEEEEeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCccccccCCCCCCCCCCCCCC-Cccc
Q psy11384         81 SKVVRNRSKSDRRIRTPPQRNFPRSVSL-TEGT  112 (137)
Q Consensus        81 skVVRvRS~e~RK~R~pp~~~~~~~~~~-~~~~  112 (137)
                      ++||||||+|+||+|+||++|++....+ +|.+
T Consensus        81 skVVR~RS~e~Rk~r~pp~r~~~~~~~~~~p~~  113 (119)
T 3u5c_a           81 ARIVRVRSREDRKNRAPPQRPRFNRENKVSPAD  113 (119)
T ss_dssp             TSSCCCCCTTTTSCCCCC---------------
T ss_pred             ccccccCChHHcccCCCCCccCcccCCccCHHH
Confidence            9999999999999999999999965554 4443

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5

Probab=100.00  E-value=9e-64  Score=376.08  Aligned_cols=105  Identities=52%  Similarity=0.939  Sum_probs=95.8

Q ss_pred             CCccccCCCCCCCCCCCccceeccCCCcccccccceeeceeecchhhHHhhhHHhhcccc--ccccceeeEeEEEeeeee
Q psy11384          1 MTCKRRNGGRSKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASYYQ--SYQLPKLYAKLHYCVSCA   78 (137)
Q Consensus         1 M~kKRrNnGR~KkgrGhv~~V~C~NCgrcvPKDKAIKrf~irNiVEaaavRDiseAsV~~--~y~lPKlyvKl~YCVSCA   78 (137)
                      ||+|||||||+|+|||||++|+|+|||+|||||||||+|+|+||||+|++|||+||+||+  +|+|||||+|+|||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA   80 (119)
T 2xzm_5            1 MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA   80 (119)
T ss_dssp             -CCCCSSTTCCCCSSSCCCEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             eecCcccccCccccccCCCCCCCCCCC
Q psy11384         79 IHSKVVRNRSKSDRRIRTPPQRNFPRS  105 (137)
Q Consensus        79 IHskVVRvRS~e~RK~R~pp~~~~~~~  105 (137)
                      ||++||||||+|+||+|+||++|++.+
T Consensus        81 IH~kIVRvRs~e~Rk~r~pp~~~~~~~  107 (119)
T 2xzm_5           81 IHSRVVRVRCAEDRRIRRPPIRNRKPQ  107 (119)
T ss_dssp             HHTTSSCCCCTGGGGCCCC--------
T ss_pred             eeccccccCCHHHcccCCCCCccccCC
Confidence            999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00