Psyllid ID: psy11404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQTHERPAPETTQPEKRLKSEEKKSPDDDDDDVNME
Secondary Structure (PSIPRED)
ccccccEEEEcccccEEEEEEcccccEEEEEEEcccccccccEEEcccccEEEEcccccccEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHccccccHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccccEEEEEEccccEEEEEEEEcccccccccEEEEccccEEEEcccccccEEEEEEEccccccEEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccHHHcccHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHcccHHHHHHHHHHcccccccHccccccccccccccccHHHcccccccccccccc
Coil and Loop (DISEMBL)
mtmkgkmvhpdkrkglvyvhqsddslmhfcwkdrqsgsvvedliifpddcefkkvpqcttgrvYVLKFKSSNRKLFfwlqepktdkddenARKVNEvlnnpptpgsqrsdssgrvEGDIQNLLSNMSQQQLMQFFGGqinqmgglsSLLGTMRSKVQRVNNCTTEAVSMFSAAlqsgqlgpvvqqfdvsneAVAATTQGNMEEFVRALQNASisgqqtherpapettqpekrlkseekkspddddddvnme
Flexible Loop (DISEMBL)
mtmkgkmvhpdkrkgLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRvyvlkfkssnrklffwlqepktdkddenarkvnevlnnpptpgsqrsdssgRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASisgqqtherpapettqpekrlkseekkspddddddvnme
Low Complexity Region (SEG)
MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIqnllsnmsqqqlmqFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQTHERPAPETTQPEKRLKSEEKKSPddddddVNME
Disordered region (IsUnstruct)
**************GLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQ**************************************************LMQFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVS**************************************************************
Disordered Region (DISOPRED)
****GKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVN************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********DKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNP*************VEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNAS***************************************
Disordered Region (DISPRO)
****GKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNP******************QNLLSNMSQQQLMQFFGGQIN**********TMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNA****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQTHERPAPETTQPEKRLKSEEKKSPDDDDDDVNME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q7K2G1	389	Proteasomal ubiquitin rec	no	N/A	0.633	0.408	0.660	2e-60
Q98SH3	406	Proteasomal ubiquitin rec	yes	N/A	0.537	0.332	0.661	1e-54
Q9JMB5	407	Proteasomal ubiquitin rec	yes	N/A	0.537	0.331	0.654	6e-53
Q7ZXD6	404	Proteasomal ubiquitin rec	N/A	N/A	0.537	0.334	0.654	7e-53
Q6P877	404	Proteasomal ubiquitin rec	yes	N/A	0.537	0.334	0.654	1e-52
Q16186	407	Proteasomal ubiquitin rec	yes	N/A	0.537	0.331	0.654	1e-52
Q6GN67	404	Proteasomal ubiquitin rec	N/A	N/A	0.537	0.334	0.647	2e-52
Q6NZ09	410	Proteasomal ubiquitin rec	yes	N/A	0.537	0.329	0.666	8e-52
Q9JKV1	407	Proteasomal ubiquitin rec	yes	N/A	0.537	0.331	0.640	1e-50
A1L5A6	407	Proteasomal ubiquitin rec	yes	N/A	0.537	0.331	0.633	1e-50

>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=CG13349 PE=1 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/162 (66%), Positives = 127/162 (78%), Gaps = 3/162 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M M GKMVHPD RKGLVY+ QSDD LMHFCWKDR SG V +DLI+FPDD E+K+V QC T
Sbjct: 25  MNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKT 84

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVYVLKFKSS R++FFW+QEPKTDKDDE  R++NE+LNNPP+  + +    G  +GD+Q
Sbjct: 85  GRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPPS--AHQRGGGGSNDGDLQ 142

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNC 162
            +L+NMSQQQLMQ FGG + QMGGLSSLLG M S+     N 
Sbjct: 143 YMLNNMSQQQLMQLFGG-VGQMGGLSSLLGQMNSRTPSSRNT 183

May function as a proteasomal ubiquitin receptor. May promote the deubiquitinating activity associated with the 26S proteasome.
Drosophila melanogaster (taxid: 7227)

>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQCTT
Sbjct: 31  MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTT 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG------- 113
           GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+   ++SG       
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASGGHELSAL 150

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 151 GGEGGLQSLLGNMSHNQLMQLI 172

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Gallus gallus (taxid: 9031)

>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGS-QRSDSSGR----- 114
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+   S SSG      
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSSGHELSAL 150

Query: 115 -VEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172

Functions as a proteasomal ubiquitin receptor. Recruits and activates the deubiquitinating enzyme UCHL5 at the 26S proteasome.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1

 Score =  207 bits (526), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 111/142 (78%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30  MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDCEFKRVSQCTT 89

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+           S+ 
Sbjct: 90  GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGSGSGSHELSAL 149

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 110/142 (77%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30  MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTT 89

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPKTDKD+E  RKVNE LNNPP PG+           S+ 
Sbjct: 90  GRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNPPMPGALGGSGSGGHELSAL 149

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus tropicalis (taxid: 8364)

>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGS-QRSDSSGR----- 114
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+   S SSG      
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSAL 150

Query: 115 -VEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Homo sapiens (taxid: 9606)

>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 110/142 (77%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30  MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTT 89

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPKTDKD+E  RK+NE LNNPP PG+           S+ 
Sbjct: 90  GRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNPPMPGALGGSGSGSHELSAL 149

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome (By similarity). Required during gastrulation.

Xenopus laevis (taxid: 8355)

>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 110/141 (78%), Gaps = 6/141 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MT+KG  V PDKRKG VY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+V QCTT
Sbjct: 30  MTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVNQCTT 89

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRS------DSSGR 114
           GRVYVLKFK+ +++LFFW+QEPKTDKDDE  RKVNE LNNPP PG+  S      + S  
Sbjct: 90  GRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNPPMPGALGSGGGGGHELSAL 149

Query: 115 VEGDIQNLLSNMSQQQLMQFF 135
            EG +Q+LL NMS  QLMQ  
Sbjct: 150 GEGGLQSLLGNMSHNQLMQLI 170

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Danio rerio (taxid: 7955)

>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 112/142 (78%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PGS  +        S+ 
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGSLGASGSSGHELSAL 150

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Mus musculus (taxid: 10090)

>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 7/142 (4%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+  +        S+ 
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSGGHELSAL 150

Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
             EG +Q+LL NMS  QLMQ  
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
193683329	398	PREDICTED: proteasomal ubiquitin recepto	0.597	0.376	0.776	8e-67
328792922	399	PREDICTED: proteasomal ubiquitin recepto	0.593	0.373	0.763	4e-62
340723548	407	PREDICTED: LOW QUALITY PROTEIN: proteaso	0.593	0.366	0.763	5e-62
350426676	407	PREDICTED: proteasomal ubiquitin recepto	0.593	0.366	0.763	7e-62
380022472	398	PREDICTED: LOW QUALITY PROTEIN: proteaso	0.593	0.374	0.756	2e-61
383850957	399	PREDICTED: proteasomal ubiquitin recepto	0.597	0.375	0.723	1e-60
383850959	392	PREDICTED: proteasomal ubiquitin recepto	0.597	0.382	0.723	1e-60
444707678	321	Proteasomal ubiquitin receptor ADRM1 [Tu	0.876	0.685	0.456	3e-60
357618033	388	hypothetical protein KGM_08118 [Danaus p	0.601	0.389	0.703	6e-60
321473452	386	hypothetical protein DAPPUDRAFT_194394 [	0.589	0.383	0.735	1e-59

>gi|193683329|ref|XP_001949000.1| PREDICTED: proteasomal ubiquitin receptor ADRM1 homolog [Acyrthosiphon pisum]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 134/152 (88%), Gaps = 2/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M M+GKMV+PDKRKGL+Y+HQSDDSL+HFCWKDR SG V +DLIIFPDDCEFK VPQCTT
Sbjct: 28  MNMRGKMVYPDKRKGLLYIHQSDDSLIHFCWKDRSSGVVEDDLIIFPDDCEFKFVPQCTT 87

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVYVLKFKSSN+K FFWLQE KTDKDDEN R++N+V+NNPP PGS RS  +   +GD+Q
Sbjct: 88  GRVYVLKFKSSNKKSFFWLQEAKTDKDDENCRRINDVMNNPPAPGSNRSGGT-TPDGDLQ 146

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLLSNMSQQQLMQ FGG + Q+GGLSSLLGTM
Sbjct: 147 NLLSNMSQQQLMQLFGG-VGQIGGLSSLLGTM 177

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792922|ref|XP_396744.4| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Apis mellifera]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 131/152 (86%), Gaps = 3/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR SG V +DLIIFPDDCEFK VPQC T
Sbjct: 27  MTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRVSGYVEDDLIIFPDDCEFKHVPQCKT 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K F WLQ+ KTDKD+E  RK+NEVLNNPPTPGSQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFVWLQDLKTDKDEEYCRKINEVLNNPPTPGSQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLL+NMSQQQLMQ FGG + Q+ GL SLLGTM
Sbjct: 146 NLLNNMSQQQLMQLFGG-VGQI-GLGSLLGTM 175

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723548|ref|XP_003400151.1| PREDICTED: LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1-like [Bombus terrestris]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 131/152 (86%), Gaps = 3/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR SG V +DLIIFPDDCEFK VPQC T
Sbjct: 27  MTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRVSGYVEDDLIIFPDDCEFKHVPQCKT 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K F WLQ+ KTDKD+E  RK+NEVLNNPPTPGSQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFVWLQDLKTDKDEEYCRKINEVLNNPPTPGSQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLL+NMSQQQLMQ FGG + Q+ GL SLLGTM
Sbjct: 146 NLLNNMSQQQLMQLFGG-VGQI-GLGSLLGTM 175

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426676|ref|XP_003494509.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Bombus impatiens]

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 131/152 (86%), Gaps = 3/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMKGKMV+PD RKG +YV+QSDDSLMHFCWKDR SG V +DLIIFPDDCEFK VPQC T
Sbjct: 27  MTMKGKMVYPDIRKGQLYVYQSDDSLMHFCWKDRVSGYVEDDLIIFPDDCEFKHVPQCKT 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K F WLQ+ KTDKD+E  RK+NEVLNNPPTPGSQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFVWLQDLKTDKDEEYCRKINEVLNNPPTPGSQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLL+NMSQQQLMQ FGG + Q+ GL SLLGTM
Sbjct: 146 NLLNNMSQQQLMQLFGG-VGQI-GLGSLLGTM 175

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022472|ref|XP_003695069.1| PREDICTED: LOW QUALITY PROTEIN: proteasomal ubiquitin receptor ADRM1-like [Apis florea]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 130/152 (85%), Gaps = 3/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMKG MV+PD RKG +YV+QSDDSLMHFCWKDR SG V +DLIIFPDDCEFK VPQC T
Sbjct: 27  MTMKGXMVYPDIRKGQLYVYQSDDSLMHFCWKDRVSGYVEDDLIIFPDDCEFKHVPQCKT 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K F WLQ+ KTDKD+E  RK+NEVLNNPPTPGSQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFVWLQDLKTDKDEEYCRKINEVLNNPPTPGSQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLL+NMSQQQLMQ FGG + Q+ GL SLLGTM
Sbjct: 146 NLLNNMSQQQLMQLFGG-VGQI-GLGSLLGTM 175

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850957|ref|XP_003701030.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like isoform 1 [Megachile rotundata]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 130/152 (85%), Gaps = 2/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMK  +V+PD+RKG +YV+QS+DSLMH CWKDR +G+V +DLIIFPDDCEFK+VPQC T
Sbjct: 27  MTMKRNIVYPDQRKGQLYVYQSNDSLMHLCWKDRTTGNVEDDLIIFPDDCEFKRVPQCET 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K FFWLQ+ KTDKD+E  RK+NEVLNNPPTP SQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFFWLQDLKTDKDEEYCRKINEVLNNPPTPASQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLLSNMSQQQLMQ FGG +  + GL SLLGTM
Sbjct: 146 NLLSNMSQQQLMQLFGG-VGPIDGLGSLLGTM 176

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850959|ref|XP_003701031.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like isoform 2 [Megachile rotundata]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 130/152 (85%), Gaps = 2/152 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTMK  +V+PD+RKG +YV+QS+DSLMH CWKDR +G+V +DLIIFPDDCEFK+VPQC T
Sbjct: 27  MTMKRNIVYPDQRKGQLYVYQSNDSLMHLCWKDRTTGNVEDDLIIFPDDCEFKRVPQCET 86

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVY+L+FKSSN+K FFWLQ+ KTDKD+E  RK+NEVLNNPPTP SQRS S+   EGD+Q
Sbjct: 87  GRVYLLRFKSSNKKFFFWLQDLKTDKDEEYCRKINEVLNNPPTPASQRSGST-NPEGDLQ 145

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLLSNMSQQQLMQ FGG +  + GL SLLGTM
Sbjct: 146 NLLSNMSQQQLMQLFGG-VGPIDGLGSLLGTM 176

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444707678|gb|ELW48916.1| Proteasomal ubiquitin receptor ADRM1 [Tupaia chinensis]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/278 (45%), Positives = 165/278 (59%), Gaps = 58/278 (20%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
           GRVYVLKFK+ +++LFFW+QEPK+D+D+E+ RKVNE LNNPP PG+  S        S+ 
Sbjct: 91  GRVYVLKFKAGSKRLFFWMQEPKSDQDEEHCRKVNECLNNPPVPGALGSSGGGGHELSAL 150

Query: 114 RVEGDIQNLLSNMSQQQLMQFFG-------------------------------GQINQM 142
             EG +Q+LL NMS  QLMQ  G                                Q  Q+
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLIGPAGLGGLAAASATSPSPAPSSGNGASTAASPTQPIQL 210

Query: 143 GGLSSLLGTMR---------------SKVQRVNNCTT-----EAVSMFSAALQSGQLGPV 182
             L S+L TM                     + N  T     +A+ MFSAAL SGQLGP+
Sbjct: 211 SDLQSILATMNVPAVPGGGQQGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPL 270

Query: 183 VQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQTHE 220
           + QF +  EAV A  +G++E F +A+QN++   Q+  E
Sbjct: 271 MCQFGLPAEAVEAANKGDVEAFAKAMQNSAKPEQEEGE 308

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357618033|gb|EHJ71129.1| hypothetical protein KGM_08118 [Danaus plexippus]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 128/152 (84%), Gaps = 1/152 (0%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MT+KG+MVHPDKRKGL+YV+Q +DSLMHFCWKDR +G V +DL+IFPDDCEF +V +CTT
Sbjct: 1   MTLKGRMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFVRVNECTT 60

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
           GRVYVLKFKS ++K FFW+QEPKTDKDDE  R++NE LNNPPT G +     G  +GD+ 
Sbjct: 61  GRVYVLKFKSFSKKYFFWMQEPKTDKDDEYCRRLNEALNNPPTSGGRGGSGGGAQDGDLH 120

Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTM 152
           NLL+NMSQQQLMQ FGG + Q+GGLSSLLGTM
Sbjct: 121 NLLNNMSQQQLMQLFGG-VGQIGGLSSLLGTM 151

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473452|gb|EFX84419.1| hypothetical protein DAPPUDRAFT_194394 [Daphnia pulex]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%), Gaps = 3/151 (1%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MTM+G MVHPDKRKGLVY+HQS DSL+HFCWKDRQSGSV +D IIFPDDCE+ +VPQCTT
Sbjct: 24  MTMRGNMVHPDKRKGLVYIHQSSDSLIHFCWKDRQSGSVEDDWIIFPDDCEYVRVPQCTT 83

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQ--RSDSSGRVEGD 118
           GRV++LKFKSSN+K FFW+QEPKTDKD+   RKVNE LNNPPTPGSQ  R  S+   E D
Sbjct: 84  GRVFLLKFKSSNKKTFFWMQEPKTDKDETYCRKVNEYLNNPPTPGSQSGRGGSNLGSERD 143

Query: 119 IQNLLSNMSQQQLMQFFGGQINQMGGLSSLL 149
           +Q+LLS+MSQQQLMQ F G +  M GLSSLL
Sbjct: 144 LQSLLSSMSQQQLMQLF-GNVGGMSGLSSLL 173

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
FB|FBgn0033886	389	Rpn13 "Regulatory particle non	0.685	0.442	0.579	1.4e-64
UNIPROTKB|F1NEQ9	409	ADRM1 "Proteasomal ubiquitin r	0.450	0.276	0.725	1.1e-60
UNIPROTKB|F1P4I9	405	ADRM1 "Proteasomal ubiquitin r	0.450	0.279	0.725	1.1e-60
UNIPROTKB|Q98SH3	406	ADRM1 "Proteasomal ubiquitin r	0.450	0.278	0.725	5.9e-60
ZFIN|ZDB-GENE-040426-905	479	adrm1 "adhesion regulating mol	0.450	0.235	0.725	3.5e-58
UNIPROTKB|Q7ZXD6	404	adrm1-b "Proteasomal ubiquitin	0.717	0.445	0.513	5.4e-57
UNIPROTKB|Q6P877	404	adrm1 "Proteasomal ubiquitin r	0.717	0.445	0.513	2.3e-56
UNIPROTKB|A1L5A6	407	ADRM1 "Proteasomal ubiquitin r	0.450	0.277	0.699	7.8e-56
MGI|MGI:1929289	407	Adrm1 "adhesion regulating mol	0.597	0.368	0.569	1.6e-55
UNIPROTKB|E2RDP4	406	ADRM1 "Uncharacterized protein	0.450	0.278	0.690	1.6e-55

FB|FBgn0033886 Rpn13 "Regulatory particle non-ATPase 13" [Drosophila melanogaster (taxid:7227)]

 Score = 516 (186.7 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 102/176 (57%), Positives = 123/176 (69%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M M GKMVHPD RKGLVY+ QSDD LMHFCWKDR SG V +DLI+FPDD E+K+V QC T
Sbjct:    25 MNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKT 84

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIX 120
             GRVYVLKFKSS R++FFW+QEPKTDKDDE  R++NE+LNNPP+   QR    G  +GD+ 
Sbjct:    85 GRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPPS-AHQRG-GGGSNDGDLQ 142

Query:   121 XXXXXXXXXXXXXFFGGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQS 176
                           FGG + QMGGLSSLLG M S+     N T+ +    ++ALQ+
Sbjct:   143 YMLNNMSQQQLMQLFGG-VGQMGGLSSLLGQMNSRTPSSRN-TSSSGGGGASALQT 196

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1NEQ9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
 Identities = 82/113 (72%), Positives = 100/113 (88%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQCTT
Sbjct:    34 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTT 93

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+   ++SG
Sbjct:    94 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASG 146

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|F1P4I9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
 Identities = 82/113 (72%), Positives = 100/113 (88%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQCTT
Sbjct:    30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTT 89

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+   ++SG
Sbjct:    90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASG 142

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|Q98SH3 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 5.9e-60, Sum P(3) = 5.9e-60
 Identities = 82/113 (72%), Positives = 100/113 (88%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQCTT
Sbjct:    31 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTT 90

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+   ++SG
Sbjct:    91 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASG 143

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

ZFIN|ZDB-GENE-040426-905 adrm1 "adhesion regulating molecule 1" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
 Identities = 82/113 (72%), Positives = 95/113 (84%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             MT+KG  V PDKRKG VY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+V QCTT
Sbjct:    99 MTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVNQCTT 158

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVLKFK+ +++LFFW+QEPKTDKDDE  RKVNE LNNPP PG+  S   G
Sbjct:   159 GRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNPPMPGALGSGGGG 211

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA;ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

UNIPROTKB|Q7ZXD6 adrm1-b "Proteasomal ubiquitin receptor ADRM1-B" [Xenopus laevis (taxid:8355)]

 Score = 471 (170.9 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
 Identities = 97/189 (51%), Positives = 121/189 (64%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct:    30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDCEFKRVSQCTT 89

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVE---- 116
             GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+     SG  E    
Sbjct:    90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGSGSGSHELSAL 149

Query:   117 ---GDIXXXXXXXXXXXXXXFFGGQ-INQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSA 172
                G +                G   +  +GGL +L G   + +      TT + S  S 
Sbjct:   150 GGEGGLQSLLGNMSHNQLMQLIGPTGLGGLGGLGALTGPGLASLLGSGGPTTSSSSSSSR 209

Query:   173 ALQSGQLGP 181
             + QS  + P
Sbjct:   210 S-QSAAVTP 217

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|Q6P877 adrm1 "Proteasomal ubiquitin receptor ADRM1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 468 (169.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 97/189 (51%), Positives = 120/189 (63%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct:    30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTT 89

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVE---- 116
             GRVYVLKFK+ +++LFFW+QEPKTDKD+E  RKVNE LNNPP PG+     SG  E    
Sbjct:    90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNPPMPGALGGSGSGGHELSAL 149

Query:   117 ---GDIXXXXXXXXXXXXXXFFGGQ-INQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSA 172
                G +                G   +  +GGL +L G   + +      TT + S  S 
Sbjct:   150 GGEGGLQSLLGNMSHNQLMQLIGPTGLGGLGGLGALTGPGLASLLGSGGPTTSSSSSSSR 209

Query:   173 ALQSGQLGP 181
             + QS  + P
Sbjct:   210 S-QSAAVTP 217

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|A1L5A6 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 79/113 (69%), Positives = 98/113 (86%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct:    31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+  +  SG
Sbjct:    91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSG 143

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

MGI|MGI:1929289 Adrm1 "adhesion regulating molecule 1" [Mus musculus (taxid:10090)]

 Score = 464 (168.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 90/158 (56%), Positives = 111/158 (70%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct:    31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 90

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQ-RSDSSGRV---- 115
             GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PGS   S SSG      
Sbjct:    91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGSLGASGSSGHELSAL 150

Query:   116 --EGDIXXXXXXXXXXXXXXFFG-GQINQMGGLSSLLG 150
               EG +                G   +  +GGL +L G
Sbjct:   151 GGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG 188

GO:0000502 "proteasome complex" evidence=ISO

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0007286 "spermatid development" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IMP

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=IMP

GO:0043248 "proteasome assembly" evidence=ISO

GO:0048477 "oogenesis" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0060009 "Sertoli cell development" evidence=IMP

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=IMP

GO:0060612 "adipose tissue development" evidence=IMP

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=IMP

UNIPROTKB|E2RDP4 ADRM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 78/113 (69%), Positives = 98/113 (86%)

Query:     1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
             M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct:    31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90

Query:    61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG 113
             GRVYVL+FK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+  +  SG
Sbjct:    91 GRVYVLQFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGTSGSG 143

GO:0070628 "proteasome binding" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JMB5	ADRM1_RAT	No assigned EC number	0.6549	0.5378	0.3316	yes	N/A
Q16186	ADRM1_HUMAN	No assigned EC number	0.6549	0.5378	0.3316	yes	N/A
Q9JKV1	ADRM1_MOUSE	No assigned EC number	0.6408	0.5378	0.3316	yes	N/A
A1L5A6	ADRM1_BOVIN	No assigned EC number	0.6338	0.5378	0.3316	yes	N/A
Q98SH3	ADRM1_CHICK	No assigned EC number	0.6619	0.5378	0.3325	yes	N/A
Q6NZ09	ADRM1_DANRE	No assigned EC number	0.6666	0.5378	0.3292	yes	N/A
Q6P877	ADRM1_XENTR	No assigned EC number	0.6549	0.5378	0.3341	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd13314	105	cd13314, PH_Rpn13, Regulatory Particle Non-ATPase	2e-65
pfam04683	84	pfam04683, Proteasom_Rpn13, Proteasome complex sub	1e-45
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	1e-07

>gnl|CDD|241468 cd13314, PH_Rpn13, Regulatory Particle Non-ATPase 13 Pleckstrin homology-like domain

 Score =  198 bits (505), Expect = 2e-65
 Identities = 72/98 (73%), Positives = 85/98 (86%)

Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           MT+KG  V PD RKGLVY++Q DD L+HFCWKDR +G+V +DLIIFPDD EFKKVPQCTT
Sbjct: 8   MTLKGTTVTPDPRKGLVYLYQGDDGLIHFCWKDRTTGAVEDDLIIFPDDAEFKKVPQCTT 67

Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVL 98
           GRVYVLKFKSS++K FFW+QEP TDKD+E  +KVNE+L
Sbjct: 68  GRVYVLKFKSSSQKHFFWMQEPSTDKDEEICKKVNELL 105

Targeted protein degradation is performed to a great extent by the ubiquitin-proteasome pathway, in which substrate proteins are marked by covalently attached ubiquitin chains that mediate recognition by the proteasome. Rpn13(also called ADRM1/ARM1) is one of the two major ubiquitin receptors of the proteasome, the other being S5a/Rpn10 which is not essential for ubiquitin-mediated protein degradation in budding yeast2. S5a has two ubiquitin interacting motifs (UIMs) that bind simultaneously to ubiquitin moieties to increase affinity while Rpn13 binds ubiquitin with a single, high affinity surface within its N-terminal PH domain. Rpn13 also binds and activates deubiquitinating enzyme Uch37, one of the proteasome's three deubiquitinating enzymes. Recently it was discovered that the ubiquitin-binding domain (BD) and Uch37 BD of human (h) Rpn13 pack against each other when it is not incorporated into the proteasome reducing hRpn13's affinity for ubiquitin. However when hRpn13 binds to hRpn2/S1 this abrogates its interdomain interactions, thus activating hRpn13 for ubiquitin binding. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|218211 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13 ubiquitin receptor

 Score =  147 bits (372), Expect = 1e-45
 Identities = 52/82 (63%), Positives = 66/82 (80%)

Query: 1  MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
          M + GK V PD RKGL+Y+++SDD L+HF WK R +G V +DLI+FP +  FK+VPQCTT
Sbjct: 3  MNLDGKTVTPDPRKGLLYLYKSDDGLLHFQWKPRDTGEVEDDLILFPGEATFKRVPQCTT 62

Query: 61 GRVYVLKFKSSNRKLFFWLQEP 82
          GRVYVLKFKSS ++ FFW+QEP
Sbjct: 63 GRVYVLKFKSSGQRYFFWMQEP 84

This family was thought originally to be involved in cell-adhesion, but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37. Length = 84

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRAL 208
           +A++  S AL+SG L  ++ Q  ++ E V A   G++E F+ AL
Sbjct: 53  QALASLSQALRSGGLPSLLSQLGLNPEEVFAANGGDVEAFLEAL 96

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG3037|consensus	330		100.0
PF04683	85	Proteasom_Rpn13: Proteasome complex subunit Rpn13	100.0

>KOG3037|consensus

Probab=100.00  E-value=8.4e-67  Score=479.56  Aligned_cols=202  Identities=53%  Similarity=0.930  Sum_probs=175.4

Q ss_pred             CcccC--cEEeecCCceEEEEEecCCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEE
Q psy11404          1 MTMKG--KMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFW   78 (251)
Q Consensus         1 M~l~g--~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFW   78 (251)
                      |.|.|  ++|+||+|||+|||++++||||||||++|++|+||||+||||+||+|+||++|||||||+|||+|+.++||||
T Consensus        20 m~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~tGRVY~LKFkSs~~r~FFW   99 (330)
T KOG3037|consen   20 MRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKTGRVYVLKFKSSDQRLFFW   99 (330)
T ss_pred             EEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCCCcEEEEEecCCCeeEEEE
Confidence            78899  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCcchHHHHhcccCHHHHHHHhcccccCCCChhhhhc--------
Q psy11404         79 LQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLG--------  150 (251)
Q Consensus        79 mQe~~~~~D~~~~~~vn~~l~~p~~~~~~~s~~~~~~~~~lq~~L~~l~~~qL~ql~~~~~~~~~~L~~iL~--------  150 (251)
                      |||+++++|+++|++||+|||+||++....+++.+       +.|+++++.++++++|. .+++.+|..++.        
T Consensus       100 MQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~-------~~l~~~~~s~~~~lfgg-~~~~~~L~~~~~e~l~~~~~  171 (330)
T KOG3037|consen  100 MQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSG-------SMLNDDSKSQLMQLFGG-SGMNDGLEALTVEQLNSLAE  171 (330)
T ss_pred             eecCCCCcCHHHHHHHHHHHcCCCccccccccccc-------cccccccHHHHHhhcCc-ccccchhhhhhHhhhccccc
Confidence            99999999999999999999999988776544432       45677889999999883 233334333331        


Q ss_pred             ccc--------------------C-----c----------------------------------------------CCC-
Q psy11404        151 TMR--------------------S-----K----------------------------------------------VQR-  158 (251)
Q Consensus       151 ~~~--------------------~-----~----------------------------------------------~p~-  158 (251)
                      ..+                    .     +                                              .|+ 
T Consensus       172 s~~~s~~~~~~~~t~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~vdLa~vL~~e~v~~vl~~~~v~erL~phl  251 (330)
T KOG3037|consen  172 SNESSLPGNSVPQTPESSVSGPESPSEPNKEEDVSNSLSTLSPQIGFGASTVDLATVLKPEAVAPVLANPGVQERLMPHL  251 (330)
T ss_pred             CccccccccccccCccccccCCCCCCccccchhhcccccCCchhccCCccceehhhhcChHHHHHHhhCcchhhhhcccC
Confidence            000                    0     0                                              000 


Q ss_pred             --------------CChhHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHH
Q psy11404        159 --------------VNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN  210 (251)
Q Consensus       159 --------------~~~qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~  210 (251)
                                    .+|||+|||++|++||+||||+|+|.||||+.++++++++|+|++|++||++
T Consensus       252 P~d~~~~~~i~e~l~spqF~qal~sfs~aL~sgql~~~i~qfgl~~~~~~sa~~g~v~~F~~aL~~  317 (330)
T KOG3037|consen  252 PSDHDRAEGILELLTSPQFRQALDSFSQALQSGQLGPVICQFGLDLEAVASANEGDVEAFLKALER  317 (330)
T ss_pred             CCCCcchHHHHHhhcCHHHHHHHHHHHHHHhcccccchhhhcCCchhhhcccccccHHHHHHHHHh
Confidence                          3559999999999999999999999999999999999999999999999999

>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor

Probab=100.00  E-value=8.7e-41  Score=257.93  Aligned_cols=82  Identities=65%  Similarity=1.281  Sum_probs=70.5

Q ss_pred             CcccCcEEeecCCceEEEEEecCCCceeEEEeeCCC-CCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEe
Q psy11404          1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQS-GSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWL   79 (251)
Q Consensus         1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~t-g~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWm   79 (251)
                      |.++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++|+|||||+|||++|++||||||
T Consensus         3 ~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fFWm   82 (85)
T PF04683_consen    3 MDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFFWM   82 (85)
T ss_dssp             EEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEEEE
T ss_pred             EEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEEEe
Confidence            789999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy11404         80 QEP   82 (251)
Q Consensus        80 Qe~   82 (251)
                      |||
T Consensus        83 Qe~   85 (85)
T PF04683_consen   83 QEP   85 (85)
T ss_dssp             -SS
T ss_pred             cCC
Confidence            996

The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
2kr0_A	411	A Proteasome Protein Length = 411		2e-49
2kr0_A	411	A Proteasome Protein Length = 411		3e-08
2r2y_A	153	Crystal Structure Of The Proteasomal Rpn13 Pru-Doma		6e-46
2z59_A	109	Complex Structures Of Mouse Rpn13 (22-130aa) And Ub		4e-43
2kqz_A	155	Fragment Of Proteasome Protein Length = 155		4e-08
2l5v_A	150	Solution Structure Of The C-Terminal Domain Of Hrpn		5e-08

>pdb|2KR0|A Chain A, A Proteasome Protein Length = 411

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 110/153 (71%), Gaps = 21/153 (13%)
Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 35  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 94
Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGS-QRSDSSGRVEGDI 119
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+   S SSG      
Sbjct: 95  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGH----- 149
Query: 120 XXXXXXXXXXXXXXFFGGQINQMGGLSSLLGTM 152
                           GG+    GGL SLLG M
Sbjct: 150 -----------ELSALGGE----GGLQSLLGNM 167

>pdb|2KR0|A Chain A, A Proteasome Protein Length = 411

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
           +A+ MFSAAL SGQLGP++ QF +  EAV A  +G++E F +A+QN
Sbjct: 342 QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 387

>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin Length = 109

Iteration: 1
 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 90/100 (90%)
Query: 1   MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
           M++KG  V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 10  MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 69
Query: 61  GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNN 100
           GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNN
Sbjct: 70  GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN 109

>pdb|2KQZ|A Chain A, Fragment Of Proteasome Protein Length = 155

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
           +A+ MFSAAL SGQLGP++ QF +  EAV A  +G++E F +A+QN
Sbjct: 86  QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 131

>pdb|2L5V|A Chain A, Solution Structure Of The C-Terminal Domain Of Hrpn13 Length = 150

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
           +A+ MFSAAL SGQLGP++ QF +  EAV A  +G++E F +A+QN
Sbjct: 81  QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	100.0
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	100.0
4b4t_X	156	26S proteasome regulatory subunit RPN13; hydrolase	100.0
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	99.69

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=100.00  E-value=2.6e-66  Score=493.02  Aligned_cols=215  Identities=56%  Similarity=0.995  Sum_probs=182.6

Q ss_pred             CcccCcEEeecCCceEEEEEecCCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEec
Q psy11404          1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQ   80 (251)
Q Consensus         1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQ   80 (251)
                      |.++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++|||||||+|||+++++|||||||
T Consensus        35 ~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLkF~ss~~r~fFWmQ  114 (411)
T 2kr0_A           35 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQ  114 (411)
T ss_dssp             EEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEEETTTCCEEEEEEC
T ss_pred             EEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEEecCCCceeEEEec
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHHHhcCCCCCCCCCCCCCC-------CCcchHHHHhcccCHHHHHHHhcc-cccCCCC--------
Q psy11404         81 EPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG-------RVEGDIQNLLSNMSQQQLMQFFGG-QINQMGG--------  144 (251)
Q Consensus        81 e~~~~~D~~~~~~vn~~l~~p~~~~~~~s~~~~-------~~~~~lq~~L~~l~~~qL~ql~~~-~~~~~~~--------  144 (251)
                      |+++++|+++|++||++|++++.+.+..+++++       +..+++|.+|+||+++|||||++. +++++++        
T Consensus       115 e~~~~~D~~~~~~vN~ll~~~~~~~~~~~~gs~~~~~~~~g~e~dl~~~~~~~sq~qlmql~g~~g~~~~~gl~~~~gp~  194 (411)
T 2kr0_A          115 EPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG  194 (411)
T ss_dssp             CSCGGGHHHHHHHHHHHHHSCSCCSCSCCCSSCCCCSSCCCSCCCSCSCSSCCCSCCSSCCCCSSCCCSTTCSCCCCCCS
T ss_pred             CCCcccHHHHHHHHHHHHhCCcccccccccCccccccccccccchhhhccccccHHHHHHhhhccccccccccccccCcc
Confidence            999999999999999999998876544333322       125678899999999999999983 1111111        


Q ss_pred             --------------------------------------------------------------------------------
Q psy11404        145 --------------------------------------------------------------------------------  144 (251)
Q Consensus       145 --------------------------------------------------------------------------------  144 (251)
                                                                                                      
T Consensus       195 ~~~~~~s~~~~~~~~s~~~~~~~~~~tp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~dLq~i  274 (411)
T 2kr0_A          195 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSI  274 (411)
T ss_dssp             TTTTTCSCCCCSSSCCCCSCCCCCCCCTTSCCCCCCSCCCCCCCSSCCCSSCCCCSCCSSSSSTTTSCCCCSSHHHHHHH
T ss_pred             cccccccCCCccccccccccccccccccccccccccccccccccccccccccccccccccCCccccccCCcccHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------hhhhhcc------ccC-----c----CC---------------CCChhHHHHHHHHHHHHhcC
Q psy11404        145 -----------------LSSLLGT------MRS-----K----VQ---------------RVNNCTTEAVSMFSAALQSG  177 (251)
Q Consensus       145 -----------------L~~iL~~------~~~-----~----~p---------------~~~~qFqQal~~fs~AL~sG  177 (251)
                                       |++||+.      +..     +    .|               -.+|||+|||++|++|||+|
T Consensus       275 Lasl~~~~~~~~~~~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sG  354 (411)
T 2kr0_A          275 LATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASG  354 (411)
T ss_dssp             HHHHTSSSCTTCSHHHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHT
T ss_pred             HHhhccccccccCCCCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence                             2222210      000     0    11               14679999999999999999


Q ss_pred             CcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhccC
Q psy11404        178 QLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISG  215 (251)
Q Consensus       178 ql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~~  215 (251)
                      ||+|||+||||+++++.||++|+||+|++||++.++++
T Consensus       355 qL~pll~qfgL~~~~~~aa~~G~VeaFl~al~~~~~~~  392 (411)
T 2kr0_A          355 QLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPE  392 (411)
T ss_dssp             SSTHHHHHHTCCHHHHHHHHHTCHHHHHHHHHHTCSSS
T ss_pred             CchHHHHHhCCChhhhhhhccCCHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999876

>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A

Probab=100.00  E-value=2.8e-41  Score=285.42  Aligned_cols=102  Identities=27%  Similarity=0.536  Sum_probs=90.9

Q ss_pred             CcccC--cEEeecCCceEEEEEecCC---CceeEEEeeCCCCCcc----ccEEecCCCceEEEecCCCCCeEEEEEEecC
Q psy11404          1 MTMKG--KMVHPDKRKGLVYVHQSDD---SLMHFCWKDRQSGSVV----EDLIIFPDDCEFKKVPQCTTGRVYVLKFKSS   71 (251)
Q Consensus         1 M~l~g--~~V~Pd~rKG~l~i~~~~d---~L~hf~W~~R~tg~vE----ddlIifPgd~~F~kV~~c~tGRVyvLkF~ss   71 (251)
                      |.+++  ++|+|++|||+|||++++|   ||+||||++|+++..+    +|+||||||++|++|++|+|||||+||| +|
T Consensus        15 ~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~tGRVyvLkF-ss   93 (156)
T 4b4t_X           15 CEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSKSGRIFALVF-SS   93 (156)
T ss_dssp             EEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCSSCCEEEEEC-SS
T ss_pred             EEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCCCcEEEEEEe-cC
Confidence            45654  6999999999999999887   6999999999886443    5999999999999999999999999999 67


Q ss_pred             CceeEEEecCCCC---------cchHHHHHHHHHHhcCCCC
Q psy11404         72 NRKLFFWLQEPKT---------DKDDENARKVNEVLNNPPT  103 (251)
Q Consensus        72 ~~k~FFWmQe~~~---------~~D~~~~~~vn~~l~~p~~  103 (251)
                      ++|||||||+++.         ++|+++|++||++|+++..
T Consensus        94 ~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~~  134 (156)
T 4b4t_X           94 NERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSSE  134 (156)
T ss_dssp             SCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC--
T ss_pred             CCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCcc
Confidence            8999999999984         7899999999999999754

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=99.69  E-value=1.5e-16  Score=134.18  Aligned_cols=57  Identities=44%  Similarity=0.669  Sum_probs=54.9

Q ss_pred             CChhHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhccC
Q psy11404        159 VNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISG  215 (251)
Q Consensus       159 ~~~qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~~  215 (251)
                      .+|||+||+++|++|||+|++++|++||||+++++.++++|+|++|++||++.+++.
T Consensus        80 ~SPQF~Qal~~fs~AL~sG~l~~vl~qfgl~~~~~~~a~~g~Ve~Fl~al~~~~~~~  136 (155)
T 2kqz_A           80 TSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPE  136 (155)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSSHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHCSCS
T ss_pred             cCHHHHHHHHHHHHHHHhCCcHHHHHHcCCChhhhhhhccCCHHHHHHHHHHHHhcc
Confidence            467999999999999999999999999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00