Psyllid ID: psy11412

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV
Secondary Structure (PSIPRED)
cEEcccccEEEEEEEEEccccccccccccccccEEEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEEEcEEEcccccEEEEccccccccccccEEccEEccccccEEEEcccccEEEEEEccccccccccccccccccHHcccccccEEEccccccccccccccccccccccccEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEEEccEEcccccEEEEcccccccccccEEEccEEccccccEEEEcccccEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccccccccccccccEEEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEcccccccccccccccccEccccccEEEEEccccEEEEEccccccHHHHHccccccccccEcHHEEEEccccccccccccHccccccccccccccEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEcccccccccccccccccEccccccEEEEEccccEEEEEccccccHHHccccccc
Coil and Loop (DISEMBL)
fyrqsdgtykadkvidipakqvqgypggdkvpAMVTDILISLddrylytsnwmhgdirqydirdtahpvlVGQIflggkiqsdsgvtviddpeldkqpdpviikgrrftgssQMFQLSldgkriyvssslfspwdkeiypdlvktdaafgsdEIMEFIQRNemrsmplsslgswkyparsmVTDILISLddrylytsnwmhgdirqydirdtahpvlVGQIflggkiqsdsgvtviddpeldkqpdpviikgrrftgssQMFQLSldgkriyvssslfspwdkeiypdlv
Flexible Loop (DISEMBL)
fyrqsdgtykadkvidipakqvqgypggdkvPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLggkiqsdsgvtviddpeldkqpdpviikgrrftgssQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLggkiqsdsgvtviddpeldkqpdpviikgrrftgssQMFQLSLDGKRIyvssslfspwdkeiypdlv
Low Complexity Region (SEG)
FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV
Disordered region (IsUnstruct)
************KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID*********PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE****PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID**********VIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI*****
Disordered Region (DISOPRED)
FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG**********KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS***************PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV
Disordered Region (DISEMBL)
********YKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV
Disordered Region (DISPRO)
FY**SDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q52KZ7	472	Selenium-binding protein	N/A	N/A	0.510	0.313	0.617	2e-48
Q569D5	472	Selenium-binding protein	yes	N/A	0.493	0.302	0.590	5e-46
Q6DCH7	472	Selenium-binding protein	N/A	N/A	0.510	0.313	0.577	3e-45
P17563	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.541	3e-43
Q2KJ32	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.547	8e-43
Q63836	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.541	1e-42
Q8VIF7	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.541	1e-42
Q13228	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.534	1e-42
Q5RF48	472	Selenium-binding protein	yes	N/A	0.486	0.298	0.534	2e-42
Q6PHD9	457	Selenium-binding protein	yes	N/A	0.437	0.277	0.513	9e-36

>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-a PE=2 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++ DG + A+KVI +P+K+V+G+P   ++P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 277 FYKEKDGKWAAEKVIQVPSKKVEGWPM-PEMPGLITDILISLDDRFLYFSNWLHGDIRQY 335

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI DT +P LVGQIFLGG IQ    VTV++D EL+ QPDPV +KG+   G  QM QLSLD
Sbjct: 336 DITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELECQPDPVTVKGKIIPGGPQMIQLSLD 395

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVKTDAAF 149
           GKRIYV+SSL+S WDK+ YPDL+K  A  
Sbjct: 396 GKRIYVTSSLYSIWDKQFYPDLLKEGAVM 424

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.
Xenopus laevis (taxid: 8355)

>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1

 Score =  184 bits (468), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++ DG + A+KVI +P+K+V+G+    ++P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 277 FYKEKDGKWAAEKVIKVPSKKVEGW-ALPEMPGLITDILISLDDRFLYFSNWLHGDIRQY 335

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI D  +P LVGQIFLGG I     VTV++D +L+ QPDPVI+KG++  G  QM QLSLD
Sbjct: 336 DITDPRNPKLVGQIFLGGSILRGGPVTVLEDKDLECQPDPVIVKGKKVPGGPQMIQLSLD 395

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVK 144
           GKR+YV++SL+S WDK+ YPD++K
Sbjct: 396 GKRLYVTNSLYSKWDKQFYPDMIK 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-b PE=2 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 113/149 (75%), Gaps = 1/149 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++ DG + A+KVI +P+K+V+G+    ++P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 277 FYKEKDGKWAAEKVIQVPSKKVEGW-ALPEMPGLITDILISLDDRFLYFSNWLHGDIRQY 335

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI +  +P LVGQIFLGG IQ    V V +D EL+ QPDPV +KG+   G  QM QLSLD
Sbjct: 336 DITNIRNPKLVGQIFLGGSIQKGGPVAVQEDKELECQPDPVTVKGKIIPGGPQMIQLSLD 395

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVKTDAAF 149
           GKRIYV+SS++S WDK+ YPD++K  A  
Sbjct: 396 GKRIYVTSSIYSIWDKQFYPDMLKEGAVM 424

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|P17563|SBP1_MOUSE Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 111/146 (76%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+ ++GT+  +KVI +P+K+V+G+  P   ++P ++TDIL+SLDDR+LY SNW+HGDIR
Sbjct: 277 FYKNAEGTWSVEKVIQVPSKKVKGWMLP---EMPGLITDILLSLDDRFLYFSNWLHGDIR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+Y ++SL+S WDK+ YPDL++
Sbjct: 394 LDGKRLYATTSLYSAWDKQFYPDLIR 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Mus musculus (taxid: 10090)

>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 110/146 (75%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+   GT+  +KVI +P K+V+G+  P   ++P+++TDIL+SLDDR+LY SNW+HGD+R
Sbjct: 277 FYKNQGGTWSVEKVIQVPPKKVKGWILP---EMPSLITDILLSLDDRFLYFSNWLHGDLR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI D   P LVGQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDG R+YV++SL+S WDK+ YPDL++
Sbjct: 394 LDGTRLYVTTSLYSAWDKQFYPDLIR 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Bos taurus (taxid: 9913)

>sp|Q63836|SBP2_MOUSE Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 110/146 (75%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+  +GT+  +KVI +P+K+V+G+  P   ++P ++TDIL+SLDDR+LY SNW+HGDIR
Sbjct: 277 FYKNEEGTWSVEKVIQVPSKKVKGWMLP---EMPGLITDILLSLDDRFLYFSNWLHGDIR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+Y ++SL+S WDK+ YPDL++
Sbjct: 394 LDGKRLYATTSLYSDWDKQFYPDLIR 419

Selenium- and acetaminophen-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Mus musculus (taxid: 10090)

>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 110/146 (75%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+   GT+  +KVI +P+K+V+G+  P   ++P ++TDIL+SLDDR+LY SNW+HGDIR
Sbjct: 277 FYKNEGGTWSVEKVIQVPSKKVKGWMLP---EMPGLITDILLSLDDRFLYFSNWLHGDIR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+YV++SL+S WDK+ YP+L++
Sbjct: 394 LDGKRLYVTTSLYSAWDKQFYPNLIR 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Rattus norvegicus (taxid: 10116)

>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 109/146 (74%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+   GT+  +KVI +P K+V+G+  P   ++P ++TDIL+SLDDR+LY SNW+HGD+R
Sbjct: 277 FYKNEGGTWSVEKVIQVPPKKVKGWLLP---EMPGLITDILLSLDDRFLYFSNWLHGDLR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI D   P L GQ+FLGG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+Y+++SL+S WDK+ YPDL++
Sbjct: 394 LDGKRLYITTSLYSAWDKQFYPDLIR 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Homo sapiens (taxid: 9606)

>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 109/146 (74%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+   GT+  +KVI +P K+V+G+  P   ++P ++TDIL+SLDDR+LY SNW+HGD+R
Sbjct: 277 FYKNEGGTWSVEKVIQVPPKKVKGWLLP---EMPGLITDILLSLDDRFLYFSNWLHGDLR 333

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI D   P L GQ+F+GG I     V V++D EL  QP+P+++KG+R  G  QM QLS
Sbjct: 334 QYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLS 393

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+YV++SL+S WDK+ YPDL++
Sbjct: 394 LDGKRLYVTTSLYSAWDKQFYPDLIR 419

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Pongo abelii (taxid: 9601)

>sp|Q6PHD9|SBP1_DANRE Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 100/144 (69%), Gaps = 17/144 (11%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY+   G + A+KVI +P+K+V+G+   D +P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 278 FYKTPKGDWAAEKVIKVPSKKVEGWALPD-MPGLITDILISLDDRFLYFSNWLHGDIRQY 336

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI D  +P +VGQ+FLGG +  D  V V++D ELD QP P I+K                
Sbjct: 337 DITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKELDSQPTPRILK---------------- 380

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVK 144
           GKR+YV++SL+S WDK+ YPDL+K
Sbjct: 381 GKRLYVTTSLYSAWDKQFYPDLIK 404

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
91092064	476	PREDICTED: similar to selenium-binding p	0.506	0.308	0.635	1e-49
345485514	480	PREDICTED: selenium-binding protein 1-A-	0.493	0.297	0.625	7e-47
148224943	472	selenium-binding protein 1-A [Xenopus la	0.510	0.313	0.617	9e-47
242012213	479	Selenium-binding protein, putative [Pedi	0.5	0.302	0.618	2e-46
332372634	475	unknown [Dendroctonus ponderosae]	0.496	0.303	0.590	2e-46
291236087	486	PREDICTED: selenium-binding protein 1-li	0.486	0.290	0.609	4e-46
157125400	481	selenium-binding protein [Aedes aegypti]	0.496	0.299	0.623	1e-45
170056259	480	selenium-binding protein 2 [Culex quinqu	0.496	0.3	0.630	4e-45
387018518	466	Selenium binding protein 1 [Crotalus ada	0.493	0.306	0.618	4e-45
307194695	489	Selenium-binding protein 1 [Harpegnathos	0.486	0.288	0.595	4e-45

>gi|91092064|ref|XP_970689.1| PREDICTED: similar to selenium-binding protein [Tribolium castaneum] gi|270004695|gb|EFA01143.1| hypothetical protein TcasGA2_TC010368 [Tribolium castaneum]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 118/148 (79%), Gaps = 1/148 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++SDGT+  DKVIDIPAK+V G+  GD +  M+TDIL+SLDD+YLY +NW+HGD+RQY
Sbjct: 278 FYQKSDGTWAVDKVIDIPAKKVSGW-DGDYINGMITDILLSLDDKYLYLNNWLHGDVRQY 336

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI D AHP L GQ+FLGGKI  DS + V++D EL +QPDPV IKGRR  G  QM QLSLD
Sbjct: 337 DISDPAHPKLTGQLFLGGKILKDSKIKVLEDKELKEQPDPVYIKGRRILGGPQMMQLSLD 396

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVKTDAA 148
           GKR+Y+SSSLFSPWD++ YP+ ++  A 
Sbjct: 397 GKRLYISSSLFSPWDRQFYPETIEKGAT 424

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485514|ref|XP_001606344.2| PREDICTED: selenium-binding protein 1-A-like [Nasonia vitripennis]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++ DGT+ AD+VI +PAK+VQG+     +  M+T+ILISLDD+YLY SNW+HGD+RQY
Sbjct: 279 FYKKDDGTWAADQVIKVPAKKVQGW-MAPHMSGMITEILISLDDKYLYLSNWLHGDVRQY 337

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI D A+P LVGQ+FLGG I  DS V V++DPEL+KQP+PV +KGRR  GS QM QLSLD
Sbjct: 338 DITDRANPKLVGQVFLGGSILIDSKVEVLEDPELEKQPEPVYVKGRRLDGSPQMLQLSLD 397

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVK 144
           GKR+Y +SSLF PWD++ Y + VK
Sbjct: 398 GKRLYATSSLFKPWDRQFYAEHVK 421

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148224943|ref|NP_001089396.1| selenium-binding protein 1-A [Xenopus laevis] gi|82177910|sp|Q52KZ7.1|SBP1A_XENLA RecName: Full=Selenium-binding protein 1-A gi|62740105|gb|AAH94129.1| MGC115145 protein [Xenopus laevis]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY++ DG + A+KVI +P+K+V+G+P   ++P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 277 FYKEKDGKWAAEKVIQVPSKKVEGWPM-PEMPGLITDILISLDDRFLYFSNWLHGDIRQY 335

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI DT +P LVGQIFLGG IQ    VTV++D EL+ QPDPV +KG+   G  QM QLSLD
Sbjct: 336 DITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELECQPDPVTVKGKIIPGGPQMIQLSLD 395

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVKTDAAF 149
           GKRIYV+SSL+S WDK+ YPDL+K  A  
Sbjct: 396 GKRIYVTSSLYSIWDKQFYPDLLKEGAVM 424

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242012213|ref|XP_002426828.1| Selenium-binding protein, putative [Pediculus humanus corporis] gi|212511041|gb|EEB14090.1| Selenium-binding protein, putative [Pediculus humanus corporis]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 114/152 (75%), Gaps = 7/152 (4%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVP---AMVTDILISLDDRYLYTSNWMHGDI 57
           F+R+SDGT+ A+KVIDIP K+V+G+    K P    M+TDILISLDD+YLY SN++HGD+
Sbjct: 280 FFRKSDGTWDAEKVIDIPCKKVEGW----KFPEMEGMITDILISLDDKYLYLSNYLHGDV 335

Query: 58  RQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 117
           RQYDI + + P LVGQIFLGG I  D  V VIDD EL  QP+PV IKGRR  GS QM QL
Sbjct: 336 RQYDITEPSKPKLVGQIFLGGSILKDGHVKVIDDKELKCQPNPVTIKGRRLVGSPQMLQL 395

Query: 118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAF 149
           SLDGKR+YV+ SLFSPWD + YPD+V   +  
Sbjct: 396 SLDGKRLYVTPSLFSPWDSQFYPDMVNAGSTL 427

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372634|gb|AEE61459.1| unknown [Dendroctonus ponderosae]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 112/144 (77%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY+Q DG +  ++VI + +K+V G+  G ++  +++DILISLDDR+LY SNW+HGD+RQY
Sbjct: 276 FYKQDDGKWATERVIKVLSKKVSGWFAGPRIGGLISDILISLDDRFLYFSNWLHGDVRQY 335

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI D A P L GQ+FLGG     S VTV++DPELD QP+PV IKG+RF G  QM QLSLD
Sbjct: 336 DITDPAKPKLTGQVFLGGAFVKGSAVTVLEDPELDAQPEPVFIKGKRFFGGPQMLQLSLD 395

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVK 144
           GKR+YVS+SLFSPWD++ YP+ +K
Sbjct: 396 GKRLYVSTSLFSPWDRQFYPETIK 419

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291236087|ref|XP_002737973.1| PREDICTED: selenium-binding protein 1-like [Saccoglossus kowalevskii]

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 118/146 (80%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQG--YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           F++  DG Y  +KVIDIPAK+V+G  YP   ++P+++TDIL+SLDD+YLY SNW+HGDIR
Sbjct: 285 FFKTDDGKYATEKVIDIPAKKVEGWFYP---EMPSLITDILLSLDDKYLYFSNWVHGDIR 341

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYD+ DT++P LVGQIFLGG I +DSGV V++D EL  QP+P+ + G+R  G  QM QLS
Sbjct: 342 QYDVTDTSNPRLVGQIFLGGSITTDSGVKVLEDKELTSQPEPLYMNGKRVAGGPQMIQLS 401

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDGKR+YV++SL+S WDK+ YPD+VK
Sbjct: 402 LDGKRLYVTTSLYSGWDKQFYPDMVK 427

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|157125400|ref|XP_001654322.1| selenium-binding protein [Aedes aegypti] gi|108882686|gb|EAT46911.1| AAEL001937-PA [Aedes aegypti]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 1   FYRQSDG-TYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQ 59
           F++  D   Y  +KVID+PAK+V+G+  G  +  M+TDILISLDDR+LY SNW+HGD+RQ
Sbjct: 282 FFKDKDSEKYSIEKVIDVPAKKVEGW-SGQYINGMMTDILISLDDRFLYFSNWLHGDVRQ 340

Query: 60  YDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL 119
           YDI D ++P L GQ+FLGG I  DS V VI+D EL +QPDP  IKGRR  G  QM QLSL
Sbjct: 341 YDITDRSNPKLTGQVFLGGAIVKDSKVKVIEDKELTEQPDPAFIKGRRLLGGPQMLQLSL 400

Query: 120 DGKRIYVSSSLFSPWDKEIYPDLVKT 145
           DGKR+YVSSSLFSPWDK+ YP++VK 
Sbjct: 401 DGKRLYVSSSLFSPWDKQFYPEMVKA 426

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056259|ref|XP_001863949.1| selenium-binding protein 2 [Culex quinquefasciatus] gi|167876018|gb|EDS39401.1| selenium-binding protein 2 [Culex quinquefasciatus]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 1   FYR-QSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQ 59
           FY+ +    Y  +KVID PAK+V G  G + +  M+TDILISLDDR++Y SNWMHGD+RQ
Sbjct: 281 FYKDEKSDKYLTEKVIDCPAKKVTG-AGSEYINGMMTDILISLDDRFIYFSNWMHGDVRQ 339

Query: 60  YDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL 119
           YDI D ++P L GQ++LGG I SDS V VI+D EL KQPDP  IKGRR  G  QM QLSL
Sbjct: 340 YDITDRSNPKLTGQVWLGGAILSDSSVKVIEDKELTKQPDPTFIKGRRLLGGPQMLQLSL 399

Query: 120 DGKRIYVSSSLFSPWDKEIYPDLVKT 145
           DGKR+YVSSSLFSPWDK+ YP++VK 
Sbjct: 400 DGKRLYVSSSLFSPWDKQFYPEMVKA 425

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387018518|gb|AFJ51377.1| Selenium binding protein 1 [Crotalus adamanteus]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 113/144 (78%), Gaps = 1/144 (0%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
           FY+  +GT+ A+KVI IP K+V+G+   + +P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct: 271 FYKTPEGTWAAEKVIQIPKKKVEGWLLSE-MPGLITDILISLDDRFLYFSNWLHGDIRQY 329

Query: 61  DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
           DI +   P LVGQ+FLGG I     V VI+DPELD QPDP +IKG+R  G+ QM QLSLD
Sbjct: 330 DISNRRKPKLVGQVFLGGSIVKGGPVKVIEDPELDCQPDPFVIKGKRVQGAPQMIQLSLD 389

Query: 121 GKRIYVSSSLFSPWDKEIYPDLVK 144
           GKR+YVS+SL+S WDK+ YPD+VK
Sbjct: 390 GKRLYVSTSLYSGWDKQFYPDMVK 413

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307194695|gb|EFN76954.1| Selenium-binding protein 1 [Harpegnathos saltator]

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 112/146 (76%), Gaps = 5/146 (3%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGY--PGGDKVPAMVTDILISLDDRYLYTSNWMHGDIR 58
           FY+  DG++  +KVI +P K+V+G+  P    +PAM+TDILISLDD+YLY SNW+HGD+R
Sbjct: 290 FYKTKDGSWDTEKVIQVPPKEVEGWMLP---TMPAMITDILISLDDKYLYMSNWLHGDVR 346

Query: 59  QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118
           QYDI +T  P L GQ+FLGG I  DS V V  D E+ +QPDPV +KGRR  G+ QM QLS
Sbjct: 347 QYDISNTKKPKLTGQVFLGGSILGDSQVRVTKDLEMSRQPDPVYVKGRRLHGAPQMLQLS 406

Query: 119 LDGKRIYVSSSLFSPWDKEIYPDLVK 144
           LDG+R+YV++S+F PWDKE YPDL+K
Sbjct: 407 LDGRRLYVTTSIFKPWDKEFYPDLLK 432

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
UNIPROTKB|H9KYX6	472	LOC100857226 "Uncharacterized	0.493	0.302	0.611	7.1e-45
ZFIN|ZDB-GENE-040426-1436	473	selenbp1 "selenium binding pro	0.493	0.302	0.583	3.1e-44
UNIPROTKB|F1ST01	472	SELENBP1 "Uncharacterized prot	0.493	0.302	0.541	1.9e-42
UNIPROTKB|Q13228	472	SELENBP1 "Selenium-binding pro	0.493	0.302	0.534	4e-42
MGI|MGI:96825	472	Selenbp1 "selenium binding pro	0.493	0.302	0.541	4e-42
UNIPROTKB|Q2KJ32	472	SELENBP1 "Selenium-binding pro	0.493	0.302	0.548	5.2e-42
MGI|MGI:104859	472	Selenbp2 "selenium binding pro	0.493	0.302	0.541	5.2e-42
UNIPROTKB|F1PNH6	502	SELENBP1 "Uncharacterized prot	0.493	0.284	0.534	6.6e-42
RGD|620571	472	Selenbp1 "selenium binding pro	0.493	0.302	0.541	1.4e-41
UNIPROTKB|Q8VIF7	472	Selenbp1 "Selenium-binding pro	0.493	0.302	0.541	1.4e-41

UNIPROTKB|H9KYX6 LOC100857226 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 88/144 (61%), Positives = 111/144 (77%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   G + A+KVI++P K+VQG+   D +P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct:   277 FYKTEKGDWAAEKVIEVPRKKVQGWLLPD-MPGLITDILISLDDRFLYFSNWLHGDIRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI +T  P LVGQ+FLGG I     VTV++D EL  QP+P +IKG+R  G  QM QLSLD
Sbjct:   336 DISNTRQPKLVGQVFLGGSIVRGGPVTVVEDKELQCQPEPFVIKGKRVQGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YVS+SL+S WDK+ YPDLVK
Sbjct:   396 GKRLYVSTSLYSGWDKQFYPDLVK 419

GO:0008430 "selenium binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1436 selenbp1 "selenium binding protein 1" [Danio rerio (taxid:7955)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 84/144 (58%), Positives = 111/144 (77%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   G + A+KVI +P+K+V+G+   D +P ++TDILISLDDR+LY SNW+HGDIRQY
Sbjct:   278 FYKTPKGDWAAEKVIKVPSKKVEGWALPD-MPGLITDILISLDDRFLYFSNWLHGDIRQY 336

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI D  +P +VGQ+FLGG +  D  V V++D ELD QP P I+KG+R  G  QM QLSLD
Sbjct:   337 DITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKELDSQPTPRILKGKRVQGGPQMLQLSLD 396

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YV++SL+S WDK+ YPDL+K
Sbjct:   397 GKRLYVTTSLYSAWDKQFYPDLIK 420

GO:0008430 "selenium binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1ST01 SELENBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 78/144 (54%), Positives = 109/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P K+V+G+   + +P+++TDIL+SLDDR+LY SNW+HGD+RQY
Sbjct:   277 FYKNEGGTWSVEKVIQVPPKKVKGWMLPE-MPSLITDILLSLDDRFLYFSNWLHGDLRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI D   P L GQ+FLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISDPKRPRLTGQLFLGGSIVKGGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YV++SL+S WDK+ YPDL++
Sbjct:   396 GKRLYVTTSLYSAWDKQFYPDLIR 419

GO:0005730 "nucleolus" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q13228 SELENBP1 "Selenium-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 77/144 (53%), Positives = 108/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGD+RQY
Sbjct:   277 FYKNEGGTWSVEKVIQVPPKKVKGWLLPE-MPGLITDILLSLDDRFLYFSNWLHGDLRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI D   P L GQ+FLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+Y+++SL+S WDK+ YPDL++
Sbjct:   396 GKRLYITTSLYSAWDKQFYPDLIR 419

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:96825 Selenbp1 "selenium binding protein 1" [Mus musculus (taxid:10090)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 78/144 (54%), Positives = 110/144 (76%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+ ++GT+  +KVI +P+K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGDIRQY
Sbjct:   277 FYKNAEGTWSVEKVIQVPSKKVKGWMLPE-MPGLITDILLSLDDRFLYFSNWLHGDIRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+Y ++SL+S WDK+ YPDL++
Sbjct:   396 GKRLYATTSLYSAWDKQFYPDLIR 419

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008430 "selenium binding" evidence=TAS

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=IDA

UNIPROTKB|Q2KJ32 SELENBP1 "Selenium-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 79/144 (54%), Positives = 109/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P K+V+G+   + +P+++TDIL+SLDDR+LY SNW+HGD+RQY
Sbjct:   277 FYKNQGGTWSVEKVIQVPPKKVKGWILPE-MPSLITDILLSLDDRFLYFSNWLHGDLRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI D   P LVGQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             G R+YV++SL+S WDK+ YPDL++
Sbjct:   396 GTRLYVTTSLYSAWDKQFYPDLIR 419

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

MGI|MGI:104859 Selenbp2 "selenium binding protein 2" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 78/144 (54%), Positives = 109/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+  +GT+  +KVI +P+K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGDIRQY
Sbjct:   277 FYKNEEGTWSVEKVIQVPSKKVKGWMLPE-MPGLITDILLSLDDRFLYFSNWLHGDIRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+Y ++SL+S WDK+ YPDL++
Sbjct:   396 GKRLYATTSLYSDWDKQFYPDLIR 419

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PNH6 SELENBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 77/144 (53%), Positives = 108/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGD+RQY
Sbjct:   307 FYKNQGGTWSVEKVIQVPPKKVKGWMLPE-MPGLITDILLSLDDRFLYFSNWLHGDLRQY 365

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI D   P L GQ+FLGG I     V V++D EL  QP+P+++KG++  G  QM QLSLD
Sbjct:   366 DISDPQRPRLTGQLFLGGSIVKGGPVQVLEDQELKSQPEPLVVKGKKVPGGPQMIQLSLD 425

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YV++SL+S WDK+ YPDL++
Sbjct:   426 GKRLYVTTSLYSAWDKQFYPDLIR 449

GO:0008430 "selenium binding" evidence=IEA

RGD|620571 Selenbp1 "selenium binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 78/144 (54%), Positives = 109/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P+K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGDIRQY
Sbjct:   277 FYKNEGGTWSVEKVIQVPSKKVKGWMLPE-MPGLITDILLSLDDRFLYFSNWLHGDIRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YV++SL+S WDK+ YP+L++
Sbjct:   396 GKRLYVTTSLYSAWDKQFYPNLIR 419

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=ISO

UNIPROTKB|Q8VIF7 Selenbp1 "Selenium-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 78/144 (54%), Positives = 109/144 (75%)

Query:     1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
             FY+   GT+  +KVI +P+K+V+G+   + +P ++TDIL+SLDDR+LY SNW+HGDIRQY
Sbjct:   277 FYKNEGGTWSVEKVIQVPSKKVKGWMLPE-MPGLITDILLSLDDRFLYFSNWLHGDIRQY 335

Query:    61 DIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 120
             DI +   P L GQIFLGG I     V V++D EL  QP+P+++KG+R  G  QM QLSLD
Sbjct:   336 DISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLD 395

Query:   121 GKRIYVSSSLFSPWDKEIYPDLVK 144
             GKR+YV++SL+S WDK+ YP+L++
Sbjct:   396 GKRLYVTTSLYSAWDKQFYPNLIR 419

GO:0008430 "selenium binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13228	SBP1_HUMAN	No assigned EC number	0.5342	0.4862	0.2987	yes	N/A
Q569D5	SBP1_XENTR	No assigned EC number	0.5902	0.4931	0.3029	yes	N/A
Q5RF48	SBP1_PONAB	No assigned EC number	0.5342	0.4862	0.2987	yes	N/A
Q6PHD9	SBP1_DANRE	No assigned EC number	0.5138	0.4379	0.2778	yes	N/A
P17563	SBP1_MOUSE	No assigned EC number	0.5410	0.4862	0.2987	yes	N/A
Q63836	SBP2_MOUSE	No assigned EC number	0.5410	0.4862	0.2987	yes	N/A
Q8VIF7	SBP1_RAT	No assigned EC number	0.5410	0.4862	0.2987	yes	N/A
Q2KJ32	SBP1_BOVIN	No assigned EC number	0.5479	0.4862	0.2987	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	4e-58
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	2e-45

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score =  192 bits (490), Expect = 4e-58
 Identities = 73/153 (47%), Positives = 94/153 (61%), Gaps = 21/153 (13%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQGYP------GGDKVPAMVTDILISLDDRYLYTSNWMH 54
           +Y+  DG + A+KVI+IPA+ V+G+       G   VP +VTDIL+SLDDR+LY S W H
Sbjct: 274 WYKDDDGKWAAEKVIEIPAEPVEGWILPPMLKGFGAVPPLVTDILLSLDDRFLYVSCWGH 333

Query: 55  GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM 114
           GD+RQYDI D  +P L GQ+ LGG I+                     +KGRR  G  QM
Sbjct: 334 GDLRQYDISDPFNPKLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQM 378

Query: 115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDA 147
            QLSLDGKR+YV++SL+S WD + YPD VK   
Sbjct: 379 VQLSLDGKRLYVTNSLYSAWDDQFYPDGVKKGG 411

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score =  158 bits (402), Expect = 2e-45
 Identities = 57/110 (51%), Positives = 70/110 (63%), Gaps = 15/110 (13%)

Query: 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 240
           +VTDIL+SLDDR+LY S W HGD+RQYDI D  +P L GQ+ LGG I+            
Sbjct: 313 LVTDILLSLDDRFLYVSCWGHGDLRQYDISDPFNPKLTGQVRLGGIIRRA---------- 362

Query: 241 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV 290
                    +KGRR  G  QM QLSLDGKR+YV++SL+S WD + YPD V
Sbjct: 363 -----PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNSLYSAWDDQFYPDGV 407

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.96
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.95
KOG0918|consensus	476		99.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.83
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	99.82
KOG0918|consensus	476		99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.7
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.49
PRK02888	635	nitrous-oxide reductase; Validated	99.48
PRK02888	635	nitrous-oxide reductase; Validated	99.42
COG3391	381	Uncharacterized conserved protein [Function unknow	99.38
COG3391	381	Uncharacterized conserved protein [Function unknow	99.29
KOG0315|consensus	311		99.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.16
KOG0315|consensus	311		99.03
KOG2096|consensus	420		98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG0266|consensus	456		98.93
KOG0639|consensus	705		98.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.88
PTZ00421	493	coronin; Provisional	98.85
KOG0291|consensus	893		98.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG1446|consensus	311		98.78
KOG0266|consensus	456		98.77
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.76
KOG1407|consensus	313		98.76
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.72
KOG0318|consensus	603		98.71
PRK02889	427	tolB translocation protein TolB; Provisional	98.69
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.69
PRK03629	429	tolB translocation protein TolB; Provisional	98.68
KOG1539|consensus	910		98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.66
PRK02889	427	tolB translocation protein TolB; Provisional	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.65
PRK05137	435	tolB translocation protein TolB; Provisional	98.65
PTZ00420	568	coronin; Provisional	98.65
PRK01742	429	tolB translocation protein TolB; Provisional	98.65
PRK05137	435	tolB translocation protein TolB; Provisional	98.61
KOG0272|consensus	459		98.6
PRK04922	433	tolB translocation protein TolB; Provisional	98.6
KOG2055|consensus	514		98.59
PRK03629	429	tolB translocation protein TolB; Provisional	98.59
PRK04792	448	tolB translocation protein TolB; Provisional	98.58
KOG0263|consensus	707		98.56
KOG0272|consensus	459		98.56
KOG0291|consensus	893		98.56
KOG0282|consensus	503		98.56
PRK00178	430	tolB translocation protein TolB; Provisional	98.55
KOG0263|consensus	707		98.54
PRK01742	429	tolB translocation protein TolB; Provisional	98.54
KOG0318|consensus	603		98.54
PRK04792	448	tolB translocation protein TolB; Provisional	98.53
KOG0645|consensus	312		98.51
KOG0279|consensus	315		98.51
KOG1446|consensus	311		98.5
KOG0639|consensus	705		98.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.47
KOG1274|consensus	933		98.46
PRK04922	433	tolB translocation protein TolB; Provisional	98.45
PRK01029	428	tolB translocation protein TolB; Provisional	98.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.42
KOG0271|consensus	480		98.4
PTZ00420	568	coronin; Provisional	98.38
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	98.38
PRK00178	430	tolB translocation protein TolB; Provisional	98.38
COG5276	370	Uncharacterized conserved protein [Function unknow	98.36
KOG0310|consensus	487		98.34
PLN00181	793	protein SPA1-RELATED; Provisional	98.33
KOG0279|consensus	315		98.32
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
KOG2055|consensus	514		98.3
KOG2110|consensus	391		98.29
KOG0283|consensus	712		98.29
KOG0771|consensus	398		98.27
KOG0645|consensus	312		98.26
KOG0772|consensus	641		98.26
PLN00181	793	protein SPA1-RELATED; Provisional	98.25
PRK01029	428	tolB translocation protein TolB; Provisional	98.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.23
KOG0973|consensus	942		98.23
KOG0293|consensus	519		98.22
KOG0646|consensus	476		98.21
KOG2096|consensus	420		98.21
KOG2919|consensus	406		98.2
KOG0772|consensus	641		98.2
KOG0973|consensus	942		98.17
PTZ00421	493	coronin; Provisional	98.14
KOG0293|consensus	519		98.14
KOG0288|consensus	459		98.12
KOG2139|consensus	445		98.1
KOG0288|consensus	459		98.1
KOG0285|consensus	460		98.1
KOG0289|consensus	506		98.09
KOG0310|consensus	487		98.06
PRK04043	419	tolB translocation protein TolB; Provisional	98.06
KOG0284|consensus	464		98.04
KOG0265|consensus	338		98.0
KOG1274|consensus	933		98.0
COG5276	370	Uncharacterized conserved protein [Function unknow	98.0
KOG2110|consensus	391		97.99
KOG1407|consensus	313		97.98
KOG0271|consensus	480		97.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.97
KOG0286|consensus	343		97.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
KOG0643|consensus	327		97.94
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	97.91
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.89
KOG0282|consensus	503		97.88
KOG0286|consensus	343		97.86
KOG0319|consensus	775		97.85
KOG0306|consensus	888		97.83
KOG0640|consensus	430		97.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.81
KOG0278|consensus	334		97.8
KOG2394|consensus	636		97.77
KOG0275|consensus	508		97.76
KOG0273|consensus	524		97.74
KOG0267|consensus	825		97.74
KOG0302|consensus	440		97.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.63
KOG0275|consensus	508		97.61
KOG4378|consensus	673		97.6
KOG1539|consensus	910		97.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.54
KOG2106|consensus	626		97.52
KOG0316|consensus	307		97.52
KOG0273|consensus	524		97.52
KOG0319|consensus	775		97.51
KOG0296|consensus	399		97.5
KOG1273|consensus	405		97.48
KOG0306|consensus	888		97.45
KOG0289|consensus	506		97.45
KOG0285|consensus	460		97.45
KOG0265|consensus	338		97.44
KOG0296|consensus	399		97.44
KOG0299|consensus	479		97.43
KOG2048|consensus	691		97.42
KOG0278|consensus	334		97.41
KOG0305|consensus	484		97.4
KOG0294|consensus	362		97.37
KOG1273|consensus	405		97.37
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.34
KOG2394|consensus	636		97.33
KOG0640|consensus	430		97.32
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.29
KOG0643|consensus	327		97.28
KOG0284|consensus	464		97.27
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.26
KOG0771|consensus	398		97.25
COG4946	668	Uncharacterized protein related to the periplasmic	97.2
KOG2048|consensus	691		97.12
KOG0294|consensus	362		97.11
KOG2111|consensus	346		97.09
KOG4497|consensus	447		97.06
KOG1445|consensus	1012		97.05
KOG0321|consensus	720		97.01
KOG0650|consensus	733		96.99
KOG0646|consensus	476		96.97
COG4946	668	Uncharacterized protein related to the periplasmic	96.97
KOG3881|consensus	412		96.95
KOG1063|consensus	764		96.93
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.93
KOG0295|consensus	406		96.91
KOG2315|consensus	566		96.9
KOG2111|consensus	346		96.88
KOG4378|consensus	673		96.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.83
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.7
KOG1963|consensus	792		96.69
KOG0283|consensus	712		96.66
KOG2919|consensus	406		96.62
KOG0647|consensus	347		96.59
KOG4497|consensus	447		96.58
KOG0264|consensus	422		96.57
KOG0305|consensus	484		96.55
KOG1445|consensus	1012		96.54
KOG0308|consensus	735		96.52
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	96.51
KOG0268|consensus	433		96.48
KOG1408|consensus	1080		96.46
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.43
KOG0303|consensus	472		96.42
KOG0299|consensus	479		96.31
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.29
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.23
KOG1009|consensus	434		96.22
KOG0295|consensus	406		96.19
KOG1036|consensus	323		96.17
KOG0321|consensus	720		96.16
KOG2315|consensus	566		96.13
KOG2321|consensus	703		96.09
KOG1034|consensus	385		96.07
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	95.98
PRK13616	591	lipoprotein LpqB; Provisional	95.93
KOG4328|consensus	498		95.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.83
KOG0264|consensus	422		95.82
KOG0277|consensus	311		95.79
KOG0316|consensus	307		95.78
KOG2139|consensus	445		95.77
KOG0269|consensus	839		95.76
KOG0322|consensus	323		95.68
KOG0290|consensus	364		95.65
KOG4227|consensus	609		95.61
KOG0307|consensus	1049		95.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	95.57
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.46
KOG0292|consensus	1202		95.4
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.32
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.25
KOG1963|consensus	792		95.22
KOG0649|consensus	325		95.22
KOG1036|consensus	323		95.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.14
KOG4328|consensus	498		95.12
KOG3914|consensus	390		95.1
KOG0313|consensus	423		95.06
KOG0641|consensus	350		95.03
KOG0313|consensus	423		94.99
KOG0268|consensus	433		94.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	94.78
KOG1063|consensus	764		94.68
KOG3881|consensus	412		94.66
KOG0650|consensus	733		94.65
KOG0269|consensus	839		94.65
KOG0322|consensus	323		94.58
KOG0303|consensus	472		94.55
KOG0292|consensus	1202		94.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.4
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.38
KOG1188|consensus	376		94.31
COG2319	466	FOG: WD40 repeat [General function prediction only	94.27
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.21
KOG1272|consensus	545		94.13
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.03
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.92
KOG1538|consensus	1081		93.87
KOG1523|consensus	361		93.82
COG2319	466	FOG: WD40 repeat [General function prediction only	93.72
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	93.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	93.63
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.59
PRK13616	591	lipoprotein LpqB; Provisional	93.57
KOG0647|consensus	347		93.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	93.33
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	93.19
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	93.08
KOG0308|consensus	735		93.06
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	93.05
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	92.97
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.92
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.74
KOG1408|consensus	1080		92.71
KOG2106|consensus	626		92.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.4
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	92.4
KOG1332|consensus	299		92.36
KOG2445|consensus	361		92.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.66
KOG0267|consensus	825		91.41
KOG2314|consensus	698		91.39
KOG4283|consensus	397		91.35
KOG1034|consensus	385		91.3
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	91.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	90.91
KOG1520|consensus	376		90.47
KOG1272|consensus	545		90.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.11
KOG1007|consensus	370		89.84
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	89.63
KOG4283|consensus	397		89.62
KOG0301|consensus	745		89.36
KOG0276|consensus	794		89.3
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.22
KOG0300|consensus	481		88.86
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	88.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	88.64
KOG4227|consensus	609		88.56
KOG0300|consensus	481		88.47
KOG0281|consensus	499		88.46
KOG4547|consensus	541		88.43
COG4590	733	ABC-type uncharacterized transport system, permeas	88.31
KOG0307|consensus	1049		88.12
KOG0301|consensus	745		87.54
KOG1214|consensus	1289		87.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.36
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.33
KOG0276|consensus	794		86.57
KOG3914|consensus	390		86.45
KOG0974|consensus	967		86.31
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.91
KOG1587|consensus	555		85.24
KOG0274|consensus	537		85.06
KOG4659|consensus	1899		84.75
KOG0642|consensus	577		84.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	84.07
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	83.34
KOG0277|consensus	311		83.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	83.03
KOG1538|consensus	1081		82.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	82.55
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	82.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.66
KOG2314|consensus	698		81.38
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	81.23
KOG4499|consensus	310		80.97
KOG0290|consensus	364		80.96
KOG4659|consensus	1899		80.92
PRK10115	686	protease 2; Provisional	80.8

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.3e-27  Score=215.55  Aligned_cols=200  Identities=20%  Similarity=0.303  Sum_probs=140.0

Q ss_pred             CCCC-ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCcee-eeEEeeccc---------------ccCCCceEEe-cC
Q psy11412         30 KVPA-MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL-VGQIFLGGK---------------IQSDSGVTVI-DD   91 (290)
Q Consensus        30 ~v~~-~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~-~~~i~~g~~---------------~~~~~~~~v~-~~   91 (290)
                      .+++ .||++++++||++|+++||..|.|+++.+.+.+.+.. ++.+...+.               .++.++..+. +.
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            3444 4599999999999999999999999999976555543 333322221               1122322222 21


Q ss_pred             CC-------C-cCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc
Q psy11412         92 PE-------L-DKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM  163 (290)
Q Consensus        92 ~~-------~-~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i  163 (290)
                      ..       + +....+.......+|+|||||+|||+||.+|+++||.+++++..|..   ..+.+..++        .+
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~---~~g~~~~lQ--------~i  233 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP---AVGKFEELQ--------TI  233 (346)
T ss_pred             CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC---CCceEEEee--------ee
Confidence            10       0 11111111122356899999999999999999999999999887753   123343333        33


Q ss_pred             cccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-CCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412        164 RSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       164 ~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      .++|..      ..+..+.++|++||||||||+|||++++|++|.|+.- +.+..++.++++|+                
T Consensus       234 ~tlP~d------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~----------------  291 (346)
T COG2706         234 DTLPED------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ----------------  291 (346)
T ss_pred             ccCccc------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc----------------
Confidence            444432      2334688999999999999999999999999999643 34667888888883                


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                                     .||+|.|+|+|++|+|||+-
T Consensus       292 ---------------~PR~F~i~~~g~~Liaa~q~  311 (346)
T COG2706         292 ---------------FPRDFNINPSGRFLIAANQK  311 (346)
T ss_pred             ---------------CCccceeCCCCCEEEEEccC
Confidence                           69999999999999999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.95  E-value=4.2e-26  Score=214.37  Aligned_cols=168  Identities=26%  Similarity=0.383  Sum_probs=124.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~-~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ...+||++.++|||++|||++++.+.|.+|+++... .+.....+.                              .+.|
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~------------------------------~~~G  191 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK------------------------------VPPG  191 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE------------------------------CSTT
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc------------------------------cccC
Confidence            455999999999999999999999999999997532 122222221                              1246


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .+||||+|||||+++||++|+.+.+.++.+..   ..+.+..++...        ++|.    +  ..+...+++|+|||
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~---~~g~~~~~~~~~--------~~~~----~--~~~~~~~~~i~isp  254 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP---SDGSLTEIQTIS--------TLPE----G--FTGENAPAEIAISP  254 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET---TTTEEEEEEEEE--------SCET----T--SCSSSSEEEEEE-T
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecc---cCCceeEEEEee--------eccc----c--ccccCCceeEEEec
Confidence            89999999999999999999999888876642   122333333322        2221    1  11124789999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEec-CCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~-d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      |||+||+|||++|+|++|++. ..+.++.++.++++|.                               +||+|+|+|||
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-------------------------------~Pr~~~~s~~g  303 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-------------------------------FPRHFAFSPDG  303 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-------------------------------SEEEEEE-TTS
T ss_pred             CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-------------------------------CccEEEEeCCC
Confidence            999999999999999999994 3456788999999773                               79999999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++|||+|+
T Consensus       304 ~~l~Va~~  311 (345)
T PF10282_consen  304 RYLYVANQ  311 (345)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEec
Confidence            99999997

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0918|consensus

Probab=99.90  E-value=2.3e-23  Score=192.40  Aligned_cols=125  Identities=57%  Similarity=1.072  Sum_probs=116.2

Q ss_pred             cCccccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCC
Q psy11412        166 MPLSSLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ  244 (290)
Q Consensus       166 ~p~~~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~  244 (290)
                      +|...+++|.+++- +..++|.+|=|-||||+++|.++.|+.|||+||.++++.+++-+||.+..+..|.|.....+..+
T Consensus       297 vp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~  376 (476)
T KOG0918|consen  297 VPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQ  376 (476)
T ss_pred             cCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCC
Confidence            55667788988774 57889999999999999999999999999999999999999999999999999999988777788


Q ss_pred             CCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCcccCCCCC
Q psy11412        245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV  290 (290)
Q Consensus       245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~~~~~~  290 (290)
                      |.+..++|+++.|+|+++.||-|||||||+|++||+||+|||||||
T Consensus       377 ~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v  422 (476)
T KOG0918|consen  377 PEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELV  422 (476)
T ss_pred             CccceecCccccCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHH
Confidence            9999999999999999999999999999999999999999999986

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=99.90  E-value=7.1e-24  Score=199.74  Aligned_cols=177  Identities=42%  Similarity=0.716  Sum_probs=98.2

Q ss_pred             CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE--ccCCCEEEEEcCCC
Q psy11412         54 HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL--SLDGKRIYVSSSLF  131 (290)
Q Consensus        54 ~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf--sPdG~~lYv~nel~  131 (290)
                      +.++++||+..   .+.++++.+|..                             |..|-.+-|  .|+..+-||...|.
T Consensus       221 G~~l~vWD~~~---r~~~Q~idLg~~-----------------------------g~~pLEvRflH~P~~~~gFvg~aLs  268 (461)
T PF05694_consen  221 GHSLHVWDWST---RKLLQTIDLGEE-----------------------------GQMPLEVRFLHDPDANYGFVGCALS  268 (461)
T ss_dssp             --EEEEEETTT---TEEEEEEES-TT-----------------------------EEEEEEEEE-SSTT--EEEEEEE--
T ss_pred             cCeEEEEECCC---CcEeeEEecCCC-----------------------------CCceEEEEecCCCCccceEEEEecc
Confidence            46899999965   567777777610                             123444444  46678888888777


Q ss_pred             CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC--------CCceeEEEEccCCCEEEEEeCCCCc
Q psy11412        132 SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA--------RSMVTDILISLDDRYLYTSNWMHGD  203 (290)
Q Consensus       132 ~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~--------~~~~~~i~~SpDGr~Lyvs~r~~~~  203 (290)
                      +.+-.++..+   ++.    |...      .+.++|...+++|.+|+        ++.+.+|.+|.|.||||+|||+++.
T Consensus       269 s~i~~~~k~~---~g~----W~a~------kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd  335 (461)
T PF05694_consen  269 SSIWRFYKDD---DGE----WAAE------KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD  335 (461)
T ss_dssp             EEEEEEEE-E---TTE----EEEE------EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred             ceEEEEEEcC---CCC----eeee------EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence            6654443322   232    2221      13335556677887765        3578999999999999999999999


Q ss_pred             EEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCc
Q psy11412        204 IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK  283 (290)
Q Consensus       204 V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~  283 (290)
                      |+.|||+||.++++++++.+||.+.++               .+..++|.++.++|+|+.+|-|||||||+|++||+||+
T Consensus       336 vrqYDISDP~~Pkl~gqv~lGG~~~~~---------------~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLys~WD~  400 (461)
T PF05694_consen  336 VRQYDISDPFNPKLVGQVFLGGSIRKG---------------DHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLYSAWDK  400 (461)
T ss_dssp             EEEEE-SSTTS-EEEEEEE-BTTTT-B-----------------TTS------S----EEE-TTSSEEEEE----HHHHH
T ss_pred             EEEEecCCCCCCcEEeEEEECcEeccC---------------CCccccccccCCCCCeEEEccCCeEEEEEeeccccccc
Confidence            999999999999999999999965322               12345788888999999999999999999999999999


Q ss_pred             ccCCCCC
Q psy11412        284 EIYPDLV  290 (290)
Q Consensus       284 ~~~~~~~  290 (290)
                      ||||+||
T Consensus       401 qfYP~~~  407 (461)
T PF05694_consen  401 QFYPDGV  407 (461)
T ss_dssp             HHSTT--
T ss_pred             ccCCCcc
Confidence            9999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=3.4e-21  Score=179.04  Aligned_cols=167  Identities=17%  Similarity=0.199  Sum_probs=116.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|++++++|||++|||++++++.|.+||+...+.........                            .....|.+|
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~----------------------------~~~~~g~~p  177 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE----------------------------VTTVEGAGP  177 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc----------------------------eecCCCCCC
Confidence            3689999999999999999999999999996532221100000                            001235789


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +|++|+|||++|||+++..+.+.++....   ..+.+..++..        ..+|..      .+.+..+.+|+|+||||
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~---~~~~~~~~~~~--------~~~p~~------~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKD---PHGEIECVQTL--------DMMPAD------FSDTRWAADIHITPDGR  240 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeC---CCCCEEEEEEE--------ecCCCc------CCCCccceeEEECCCCC
Confidence            99999999999999999777665554321   11122211111        111110      11223567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      +||++++++++|.+|++...+ ..++++.+++|.                                .|+.|+|+|||++|
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--------------------------------~p~~~~~~~dg~~l  288 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--------------------------------QPRGFNIDHSGKYL  288 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--------------------------------cCCceEECCCCCEE
Confidence            999999999999999995432 345677777754                                79999999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ||+|+
T Consensus       289 ~va~~  293 (330)
T PRK11028        289 IAAGQ  293 (330)
T ss_pred             EEEEc
Confidence            99997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.83  E-value=6.8e-19  Score=165.52  Aligned_cols=179  Identities=20%  Similarity=0.242  Sum_probs=116.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEe-ecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF-LGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~-~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+..||+++++|||++||++|+++|+|.+|++.+.+.+.....+. ..+. .+.        .            .+..+
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~--------~------------~rq~~  143 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPN--------P------------DRQEG  143 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESS--------T------------TTTSS
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCc--------c------------ccccc
Confidence            456899999999999999999999999999998755444332211 1110 000        0            01124


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .+|+++.|+|||+++||++.....+..+....   ..+.+.....        +           .++.+..|++|+|+|
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~---~~~~l~~~~~--------~-----------~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD---DTGKLTPVDS--------I-----------KVPPGSGPRHLAFSP  201 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T---TS-TEEEEEE--------E-----------ECSTTSSEEEEEE-T
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeC---CCceEEEeec--------c-----------ccccCCCCcEEEEcC
Confidence            68999999999999999876333222222211   1111111000        0           123456899999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEec-CCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~-d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      ||++||+.++.+++|.+|++. ..+..+.++.+++...                      .+.+.   ..|.+++|||||
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~----------------------~~~~~---~~~~~i~ispdg  256 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE----------------------GFTGE---NAPAEIAISPDG  256 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----------------------TSCSS---SSEEEEEE-TTS
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----------------------ccccc---CCceeEEEecCC
Confidence            999999999999999999997 3344556676665421                      00111   268999999999


Q ss_pred             CEEEEEcCC
Q psy11412        269 KRIYVSSSL  277 (290)
Q Consensus       269 ~~L~Van~~  277 (290)
                      ++|||+|+.
T Consensus       257 ~~lyvsnr~  265 (345)
T PF10282_consen  257 RFLYVSNRG  265 (345)
T ss_dssp             SEEEEEECT
T ss_pred             CEEEEEecc
Confidence            999999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=99.82  E-value=1.5e-20  Score=177.28  Aligned_cols=139  Identities=55%  Similarity=1.009  Sum_probs=84.8

Q ss_pred             CeecCCCceeEEEEEecCCCccCCCCCCCCC-------CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeE
Q psy11412          1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKV-------PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ   73 (290)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~   73 (290)
                      |||+++|+|++.+||+|++++|..+. .+++       |+.+..|.+|.|+|+||++|+..|.|+.|||+|+.+|+++++
T Consensus       274 ~~k~~~g~W~a~kVi~ip~~~v~~~~-lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq  352 (461)
T PF05694_consen  274 FYKDDDGEWAAEKVIDIPAKKVEGWI-LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ  352 (461)
T ss_dssp             EEE-ETTEEEEEEEEEE--EE--SS----GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE
T ss_pred             EEEcCCCCeeeeEEEECCCcccCccc-ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE
Confidence            79999999999999999999999886 5555       889999999999999999999999999999999999999999


Q ss_pred             EeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecce
Q psy11412         74 IFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDE  153 (290)
Q Consensus        74 i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~  153 (290)
                      +.+||.+....+               ..+++.+..++|+||.+|.|||+|||+|+|-+.||..+|++..+++..+..++
T Consensus       353 v~lGG~~~~~~~---------------~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLys~WD~qfYP~~~~~g~~m~~iD  417 (461)
T PF05694_consen  353 VFLGGSIRKGDH---------------PVVKGKRLRGGPQMVQLSLDGKRLYVTNSLYSAWDKQFYPDGVKNGSWMLKID  417 (461)
T ss_dssp             EE-BTTTT-B-----------------TTS------S----EEE-TTSSEEEEE----HHHHHHHSTT------EEEEEE
T ss_pred             EEECcEeccCCC---------------ccccccccCCCCCeEEEccCCeEEEEEeecccccccccCCCccccccEEEEEE
Confidence            999976532211               11233444579999999999999999999999999999998776777776666


Q ss_pred             ee
Q psy11412        154 IM  155 (290)
Q Consensus       154 ~~  155 (290)
                      +.
T Consensus       418 vd  419 (461)
T PF05694_consen  418 VD  419 (461)
T ss_dssp             E-
T ss_pred             ec
Confidence            54

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0918|consensus

Probab=99.80  E-value=3.5e-19  Score=164.84  Aligned_cols=155  Identities=50%  Similarity=0.941  Sum_probs=142.7

Q ss_pred             CeecCCCceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412          1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      |++.++.||.+.+||.++.++|..+. .+..|+....+.+|-|.|+||+++|-.|.|+.|||+|+-++++.+++.+||.+
T Consensus       281 ~~k~~~~tws~~~visvp~~kv~~w~-~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i  359 (476)
T KOG0918|consen  281 FFKNSDDTWSAEVVISVPPLKVENWI-LPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSI  359 (476)
T ss_pred             eeeccccccceeEEEecCcccccccc-CcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEe
Confidence            67888899999999999999999998 88899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeee
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIME  156 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~  156 (290)
                      ...+++-+..++.+..++.+..+.+++..+||+|+.+|-|||+|||+|+|-+.||..|||+.++.|+.+.++|+.+
T Consensus       360 ~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt  435 (476)
T KOG0918|consen  360 QKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDT  435 (476)
T ss_pred             ecCCceEEeccccccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeec
Confidence            8888998888877777777777888888899999999999999999999999999999999888888888777754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=7.1e-18  Score=156.74  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=106.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ..+.|..+++||||++||++++..+.|.+|++++.+....+..+..                                +.
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~--------------------------------~~   80 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL--------------------------------PG   80 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC--------------------------------CC
Confidence            4457889999999999999998889999999974333333332211                                24


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .|.+++|+|+|++||+++...+.               +..++...   ...+.. ...     .++....+..++|+||
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~---------------v~v~~~~~---~g~~~~-~~~-----~~~~~~~~~~~~~~p~  136 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANC---------------VSVSPLDK---DGIPVA-PIQ-----IIEGLEGCHSANIDPD  136 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCe---------------EEEEEECC---CCCCCC-cee-----eccCCCcccEeEeCCC
Confidence            78999999999999999873332               22222210   000000 000     0112235678999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceE----eeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVL----VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~----v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                      |++||+++.+++.|.+||+...+....    ..+++.                                +.+|++++|+|
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~--------------------------------g~~p~~~~~~p  184 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE--------------------------------GAGPRHMVFHP  184 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC--------------------------------CCCCceEEECC
Confidence            999999999999999999964221110    011112                                23799999999


Q ss_pred             CCCEEEEEcC
Q psy11412        267 DGKRIYVSSS  276 (290)
Q Consensus       267 DG~~L~Van~  276 (290)
                      ||++|||+|+
T Consensus       185 dg~~lyv~~~  194 (330)
T PRK11028        185 NQQYAYCVNE  194 (330)
T ss_pred             CCCEEEEEec
Confidence            9999999987

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.70  E-value=2.3e-15  Score=141.44  Aligned_cols=204  Identities=14%  Similarity=0.093  Sum_probs=122.8

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCc--------eEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccc-
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAM--------VTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKI-   80 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~--------p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~-   80 (290)
                      .-.|+|+.+.++...+   +++..        |..+++|||||+|||+|.. ++.|.++|+..   .+++.++.+++.. 
T Consensus        78 ~V~v~D~~t~~~~~~i---~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---~kvv~ei~vp~~~~  151 (352)
T TIGR02658        78 YVEVIDPQTHLPIADI---ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---KAFVRMMDVPDCYH  151 (352)
T ss_pred             EEEEEECccCcEEeEE---ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC---CcEEEEEeCCCCcE
Confidence            3568888888888766   55444        4499999999999999987 89999999864   5677777665321 


Q ss_pred             ----cCCCceEEecCCCCcC---------CCC--ccee-eccccCCCceEEEEcc-CCCEEEEEcCCCCCcceeeccccc
Q psy11412         81 ----QSDSGVTVIDDPELDK---------QPD--PVII-KGRRFTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLV  143 (290)
Q Consensus        81 ----~~~~~~~v~~~~~~~~---------~~~--~~~~-~~~~~g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~  143 (290)
                          ++...+..+.|..+..         ...  +.|- ...+....|   .|++ ||+++|+++|  +.+.......  
T Consensus       152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~--  224 (352)
T TIGR02658       152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSS--  224 (352)
T ss_pred             EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCC--
Confidence                1111122222221100         000  0000 001112445   5566 9999999988  3332221100  


Q ss_pred             CCC-ceeecceeeeeeecccccccCcc-ccCccccCCCCceeEEEEccCCCEEEEEe-C--------CCCcEEEEEecCC
Q psy11412        144 KTD-AAFGSDEIMEFIQRNEMRSMPLS-SLGSWKYPARSMVTDILISLDDRYLYTSN-W--------MHGDIRQYDIRDT  212 (290)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~i~~~p~~-~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~-r--------~~~~V~v~Dv~d~  212 (290)
                       ++ .....+...           ... ..++| .|++-++  ++++|||++|||+. .        ..+.|+++|..  
T Consensus       225 -~~~~~~~~~~~~-----------~~~~~~~~w-rP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--  287 (352)
T TIGR02658       225 -GDAKFLPAIEAF-----------TEAEKADGW-RPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK--  287 (352)
T ss_pred             -Ccceecceeeec-----------ccccccccc-CCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECC--
Confidence             00 000011111           000 01244 2322233  99999999999953 2        23689999874  


Q ss_pred             CCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC-EEEEEcCC
Q psy11412        213 AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK-RIYVSSSL  277 (290)
Q Consensus       213 ~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~-~L~Van~~  277 (290)
                       +.+.+.++++|.                                .|.+++|||||+ +||++|..
T Consensus       288 -t~kvi~~i~vG~--------------------------------~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       288 -TGKRLRKIELGH--------------------------------EIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             -CCeEEEEEeCCC--------------------------------ceeeEEECCCCCeEEEEeCCC
Confidence             478899999877                                699999999999 99999973

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.6e-14  Score=132.59  Aligned_cols=205  Identities=13%  Similarity=0.118  Sum_probs=127.1

Q ss_pred             EEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCC--CCeEEEEEcCCC-CCceeeeEEeecccccCCCceEEec
Q psy11412         14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~--~g~V~v~dv~d~-~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .+|.++++..... .+...+.|.-++++|++|+||+.+..  .|.|..|.+++. +++..+.....              
T Consensus        22 ~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--------------   86 (346)
T COG2706          22 NLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--------------   86 (346)
T ss_pred             EEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--------------
Confidence            3444455544444 44456799999999999999999876  789999999753 55555543222              


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeeccc-----------------------------
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD-----------------------------  141 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~-----------------------------  141 (290)
                                       .|..|-|++++++|++||++|=-.+.+.++-..+                             
T Consensus        87 -----------------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          87 -----------------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -----------------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence                             2467899999999999999986444444431100                             


Q ss_pred             --ccCCCceeecceeeeeeeccc-ccccCcccc---CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-CC
Q psy11412        142 --LVKTDAAFGSDEIMEFIQRNE-MRSMPLSSL---GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-AH  214 (290)
Q Consensus       142 --~~~~g~~~~~~~~~~~~~~~~-i~~~p~~~~---~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-~~  214 (290)
                        ...++..+...|+-   +.+. +-....+..   .-..++.+.+|++|+|+|+||++|+.++.+++|.||..... +.
T Consensus       150 a~~tP~~~~l~v~DLG---~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         150 ANFTPDGRYLVVPDLG---TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             eeeCCCCCEEEEeecC---CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence              00011111111110   0000 000000000   00012234579999999999999999999999999999653 34


Q ss_pred             ceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCC
Q psy11412        215 PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF  278 (290)
Q Consensus       215 ~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~  278 (290)
                      .+.++.+.+-                      |+.+.|.+   +-..+.+|||||+|||+|+..
T Consensus       227 ~~~lQ~i~tl----------------------P~dF~g~~---~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         227 FEELQTIDTL----------------------PEDFTGTN---WAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             EEEeeeeccC----------------------ccccCCCC---ceeEEEECCCCCEEEEecCCC
Confidence            4456655442                      12233443   567899999999999999943

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=8.8e-15  Score=139.01  Aligned_cols=173  Identities=22%  Similarity=0.239  Sum_probs=113.1

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceE-EEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVT-DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~-~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      .-.|||....++...+   +.+..+| .+.+|||||++||++. +|.|.+||+..   .+.++++.+|            
T Consensus        17 ~v~viD~~t~~~~~~i---~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~---~~~v~~i~~G------------   77 (369)
T PF02239_consen   17 SVAVIDGATNKVVARI---PTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLAT---GKVVATIKVG------------   77 (369)
T ss_dssp             EEEEEETTT-SEEEEE---E-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTS---SSEEEEEE-S------------
T ss_pred             EEEEEECCCCeEEEEE---cCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCc---ccEEEEEecC------------
Confidence            4578999998888876   6655555 5789999999999996 78999999865   5577777665            


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                                          ..|+++++|+|||++|++|...+.+               .++|..+   .+.++.++..
T Consensus        78 --------------------~~~~~i~~s~DG~~~~v~n~~~~~v---------------~v~D~~t---le~v~~I~~~  119 (369)
T PF02239_consen   78 --------------------GNPRGIAVSPDGKYVYVANYEPGTV---------------SVIDAET---LEPVKTIPTG  119 (369)
T ss_dssp             --------------------SEEEEEEE--TTTEEEEEEEETTEE---------------EEEETTT-----EEEEEE--
T ss_pred             --------------------CCcceEEEcCCCCEEEEEecCCCce---------------eEecccc---ccceeecccc
Confidence                                5799999999999999998743333               2233222   2233333322


Q ss_pred             ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412        170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                      ..... . ..+.+++|..||+....+++....+.|.+.|..++ .+..+..+.+|.                        
T Consensus       120 ~~~~~-~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~~i~~g~------------------------  172 (369)
T PF02239_consen  120 GMPVD-G-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVTTIKVGR------------------------  172 (369)
T ss_dssp             EE-TT-T-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEEEEE--T------------------------
T ss_pred             ccccc-c-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cccceeeecccc------------------------
Confidence            11110 0 11356789999999987888877899999998775 334556666655                        


Q ss_pred             eecccccCCcceEEEccCCCEEEEEc
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                              .|+++.|+||||++++|+
T Consensus       173 --------~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  173 --------FPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             --------TEEEEEE-TTSSEEEEEE
T ss_pred             --------cccccccCcccceeeecc
Confidence                    799999999999999974

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.61  E-value=5.5e-14  Score=132.16  Aligned_cols=89  Identities=16%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      ..--|||..+.++...+   +++..|+++ +||||++||+|+.         .++.|.+||..+   .+.+.++.++.. 
T Consensus        27 ~~v~ViD~~~~~v~g~i---~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t---~~~~~~i~~p~~-   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMT---DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT---HLPIADIELPEG-   98 (352)
T ss_pred             ceEEEEECCCCEEEEEE---EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc---CcEEeEEccCCC-
Confidence            45669999999998877   889999996 9999999999998         789999999854   666776666510 


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne  129 (290)
                                       |.      .-.+..|..++||||||+|||.|+
T Consensus        99 -----------------p~------~~~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        99 -----------------PR------FLVGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             -----------------ch------hhccCccceEEECCCCCEEEEecC
Confidence                             00      002357789999999999999997

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.53  E-value=1.6e-13  Score=130.36  Aligned_cols=217  Identities=20%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccccc----------
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQ----------   81 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~----------   81 (290)
                      -.+||+...++...+   +++..|.++++|+|||+|||+|+..++|.++|..+   ++.+..+.+++...          
T Consensus        60 vsviD~~~~~~v~~i---~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aI  133 (369)
T PF02239_consen   60 VSVIDLATGKVVATI---KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAI  133 (369)
T ss_dssp             EEEEETTSSSEEEEE---E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEE
T ss_pred             EEEEECCcccEEEEE---ecCCCcceEEEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeE
Confidence            579999999999877   89999999999999999999999999999999754   55666665542211          


Q ss_pred             ---C-----------CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCc
Q psy11412         82 ---S-----------DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDA  147 (290)
Q Consensus        82 ---~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~  147 (290)
                         +           .+.+++++...    ..+........+..|+.+.|+|+||+++++....+.+.+....    .+.
T Consensus       134 v~s~~~~~fVv~lkd~~~I~vVdy~d----~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~----~~k  205 (369)
T PF02239_consen  134 VASPGRPEFVVNLKDTGEIWVVDYSD----PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK----TGK  205 (369)
T ss_dssp             EE-SSSSEEEEEETTTTEEEEEETTT----SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT----TTE
T ss_pred             EecCCCCEEEEEEccCCeEEEEEecc----ccccceeeecccccccccccCcccceeeecccccceeEEEeec----cce
Confidence               1           12223332111    1111122334567899999999999999975544433332110    011


Q ss_pred             eeecceeeeeeeccc-------------------------ccccCcc--ccCccc----cCCCCceeEEEEccCCCEEEE
Q psy11412        148 AFGSDEIMEFIQRNE-------------------------MRSMPLS--SLGSWK----YPARSMVTDILISLDDRYLYT  196 (290)
Q Consensus       148 ~~~~~~~~~~~~~~~-------------------------i~~~p~~--~~~~~~----~~~~~~~~~i~~SpDGr~Lyv  196 (290)
                      .+..++.-....+..                         +..-+..  ....|.    ++..+.+.-|..|||+++||+
T Consensus       206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwv  285 (369)
T PF02239_consen  206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWV  285 (369)
T ss_dssp             EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEE
T ss_pred             EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEe
Confidence            111111000000000                         0000000  001111    112233466889999999999


Q ss_pred             E---eCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        197 S---NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       197 s---~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      .   +..+++|.|+|..+   ++.+.++..+.                              +..+-++.|++||+++|+
T Consensus       286 d~~~~~~~~~v~viD~~t---l~~~~~i~~~~------------------------------~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  286 DTFLNPDADTVQVIDKKT---LKVVKTITPGP------------------------------GKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             E-TT-SSHT-EEEEECCG---TEEEE-HHHHH------------------------------T--EEEEEE-TTSSEEEE
T ss_pred             eccCCCCCceEEEEECcC---cceeEEEeccC------------------------------CCcEeccEECCCCCEEEE
Confidence            9   55678999999864   45555554332                              114789999999999999


Q ss_pred             Ec
Q psy11412        274 SS  275 (290)
Q Consensus       274 an  275 (290)
                      +.
T Consensus       333 S~  334 (369)
T PF02239_consen  333 SV  334 (369)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.53  E-value=1.7e-12  Score=116.34  Aligned_cols=180  Identities=14%  Similarity=0.196  Sum_probs=111.2

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|+...+.....   +.+..+.+++++|||++++++......+..||..+   .+.+..+..              
T Consensus        96 ~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~--------------  155 (300)
T TIGR03866        96 LVTVIDIETRKVLAEI---PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLV--------------  155 (300)
T ss_pred             eEEEEECCCCeEEeEe---eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEc--------------
Confidence            3556677665544433   33446789999999999998876555677788653   233222211              


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        +..|++++|+|||++||+++...+               .+..++...   .+.+..+... 
T Consensus       156 ------------------~~~~~~~~~s~dg~~l~~~~~~~~---------------~v~i~d~~~---~~~~~~~~~~-  198 (300)
T TIGR03866       156 ------------------DQRPRFAEFTADGKELWVSSEIGG---------------TVSVIDVAT---RKVIKKITFE-  198 (300)
T ss_pred             ------------------CCCccEEEECCCCCEEEEEcCCCC---------------EEEEEEcCc---ceeeeeeeec-
Confidence                              146788999999999998765222               233333322   1111111000 


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                      ..+ ..+....+.++++||||+++|++...+++|.+||+.+   .+.+..+..+.                         
T Consensus       199 ~~~-~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~-------------------------  249 (300)
T TIGR03866       199 IPG-VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQ-------------------------  249 (300)
T ss_pred             ccc-cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCC-------------------------
Confidence            000 0011124567999999999999887788999999843   34444443333                         


Q ss_pred             ecccccCCcceEEEccCCCEEEEEcC---CCCCCCc
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVSSS---LFSPWDK  283 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Van~---~~~~~~~  283 (290)
                             .+..++|+|||++||+++.   .+..||.
T Consensus       250 -------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       250 -------RVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             -------CcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence                   5788999999999999864   4455553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.49  E-value=3.1e-12  Score=114.69  Aligned_cols=165  Identities=19%  Similarity=0.274  Sum_probs=106.3

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|+...+.....   .....+.+++++|||++||+++..++.|.+||....   +.+..+..              
T Consensus        12 ~v~~~d~~t~~~~~~~---~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~--------------   71 (300)
T TIGR03866        12 TISVIDTATLEVTRTF---PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPS--------------   71 (300)
T ss_pred             EEEEEECCCCceEEEE---ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccC--------------
Confidence            3455677665544433   334457889999999999988877899999998642   22222211              


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        +..+..++|+|+|+.+|++++.               ++.+..++...   .+.+..+    
T Consensus        72 ------------------~~~~~~~~~~~~g~~l~~~~~~---------------~~~l~~~d~~~---~~~~~~~----  111 (300)
T TIGR03866        72 ------------------GPDPELFALHPNGKILYIANED---------------DNLVTVIDIET---RKVLAEI----  111 (300)
T ss_pred             ------------------CCCccEEEECCCCCEEEEEcCC---------------CCeEEEEECCC---CeEEeEe----
Confidence                              1357789999999999998752               12333333322   1112211    


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                            +.+..+.+++++|||++|+++....+.+.+||...   ...+..+..+.                         
T Consensus       112 ------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~-------------------------  157 (300)
T TIGR03866       112 ------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQ-------------------------  157 (300)
T ss_pred             ------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCC-------------------------
Confidence                  11123567999999999998885556677787642   33333333332                         


Q ss_pred             ecccccCCcceEEEccCCCEEEEEcC
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                             .|+.++|+|||++|++++.
T Consensus       158 -------~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       158 -------RPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             -------CccEEEECCCCCEEEEEcC
Confidence                   5888999999999988753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.48  E-value=6.5e-13  Score=131.34  Aligned_cols=212  Identities=11%  Similarity=0.066  Sum_probs=130.1

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---CCCeEEEEEcCCCCCceeeeEEeecc--ccc---
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---MHGDIRQYDIRDTAHPVLVGQIFLGG--KIQ---   81 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---~~g~V~v~dv~d~~~~~~~~~i~~g~--~~~---   81 (290)
                      ..--+||....+|...+   .|++.|..++++|||+++|++++   .+.++...+..+..  .. -.+...+  .+.   
T Consensus       215 ~~vSvID~etmeV~~qV---~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~-vvfni~~iea~vkdG  288 (635)
T PRK02888        215 SLFTAVDAETMEVAWQV---MVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WV-VVFNIARIEEAVKAG  288 (635)
T ss_pred             EEEEEEECccceEEEEE---EeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eE-EEEchHHHHHhhhCC
Confidence            44568899988888876   88999999999999999999984   34556666553311  11 0010000  000   


Q ss_pred             -----CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccC--CCceeeccee
Q psy11412         82 -----SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVK--TDAAFGSDEI  154 (290)
Q Consensus        82 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~--~g~~~~~~~~  154 (290)
                           ..++|.|++-..-. ........-.+.|..|+++.+||||+++|++|.+++++++........  ++ .   ++.
T Consensus       289 K~~~V~gn~V~VID~~t~~-~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~-~---~~~  363 (635)
T PRK02888        289 KFKTIGGSKVPVVDGRKAA-NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG-K---IKP  363 (635)
T ss_pred             CEEEECCCEEEEEECCccc-cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc-c---CCc
Confidence                 13456777644300 000011223446789999999999999999999888777654321000  00 0   010


Q ss_pred             eeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-----C--CceEeeEEeeCcee
Q psy11412        155 MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-----A--HPVLVGQIFLGGKI  227 (290)
Q Consensus       155 ~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-----~--~~~~v~~i~~Gg~~  227 (290)
                      .+    ..++.          ...+-.|.+.+|+++|. +|+|.+.+++|..|++...     +  ...+++.+++.-  
T Consensus       364 ~~----~vvae----------vevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y--  426 (635)
T PRK02888        364 RD----AVVAE----------PELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY--  426 (635)
T ss_pred             cc----eEEEe----------eccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC--
Confidence            00    01111          11234678899999996 8999999999999999641     0  023455555543  


Q ss_pred             cCCCceEEecCCCCCCCCCcceeecccccCCcceEEE------ccCCCEEEEEcCCCC
Q psy11412        228 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL------SLDGKRIYVSSSLFS  279 (290)
Q Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~------sPDG~~L~Van~~~~  279 (290)
                                                    +|-++.-      .||||+|++.|.+.+
T Consensus       427 ------------------------------~pgh~~~~~g~t~~~dgk~l~~~nk~sk  454 (635)
T PRK02888        427 ------------------------------QPGHNHASMGETKEADGKWLVSLNKFSK  454 (635)
T ss_pred             ------------------------------ccceeeecCCCcCCCCCCEEEEcccccc
Confidence                                          2434444      899999999998554

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.42  E-value=8.1e-12  Score=123.63  Aligned_cols=191  Identities=16%  Similarity=0.155  Sum_probs=126.1

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCC--ce-----EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPA--MV-----TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK   79 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~p-----~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~   79 (290)
                      -+++-+++|.||-.+-.+-.-..+.+.  ++     +.+=++|||+.|++.....+.++++|.+   ..+++.++.++  
T Consensus       160 ~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~e---tmeV~~qV~Vd--  234 (635)
T PRK02888        160 DVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAE---TMEVAWQVMVD--  234 (635)
T ss_pred             ccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECc---cceEEEEEEeC--
Confidence            578889999999766666542222322  22     2466899999999887778999999865   46677777665  


Q ss_pred             ccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEc---CCCCCccee----------e-cc---cc
Q psy11412         80 IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS---SLFSPWDKE----------I-YP---DL  142 (290)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~n---el~~~~d~~----------~-~~---~~  142 (290)
                                                    ..|++++++|||+++|+++   |.+.++...          + ..   +.
T Consensus       235 ------------------------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~  284 (635)
T PRK02888        235 ------------------------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEA  284 (635)
T ss_pred             ------------------------------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHh
Confidence                                          5789999999999999996   544332221          1 00   11


Q ss_pred             cCCC-------ceeecceeeee--eecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC
Q psy11412        143 VKTD-------AAFGSDEIMEF--IQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA  213 (290)
Q Consensus       143 ~~~g-------~~~~~~~~~~~--~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~  213 (290)
                      .++|       +.+.++|...-  .....+.          .+|.+..|.+|.+||||+++|++|..+++|+|+|+..-.
T Consensus       285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~----------yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTR----------YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             hhCCCEEEECCCEEEEEECCccccCCcceEE----------EEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            1223       22322222110  0011122          244566788999999999999999999999999996421


Q ss_pred             C---------ceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        214 H---------PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       214 ~---------~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                      .         ..+++++++|-                                +|.+.+|+++|+ +|++-
T Consensus       355 ~~~~~~~~~~~~vvaevevGl--------------------------------GPLHTaFDg~G~-aytsl  392 (635)
T PRK02888        355 DLFDGKIKPRDAVVAEPELGL--------------------------------GPLHTAFDGRGN-AYTTL  392 (635)
T ss_pred             hhhhccCCccceEEEeeccCC--------------------------------CcceEEECCCCC-EEEeE
Confidence            1         12456665544                                899999999997 77763

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=4e-11  Score=114.51  Aligned_cols=175  Identities=18%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             ceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412          8 TYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG   85 (290)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~   85 (290)
                      ....-.|||++...+....   .++..|++++++|+|+++||++.  .+++|.++|-.   ..+++..+..|        
T Consensus        94 ~~~~v~vid~~~~~~~~~~---~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~---t~~~~~~~~vG--------  159 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSI---PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA---TNKVTATIPVG--------  159 (381)
T ss_pred             CCCeEEEEcCcccceeeEe---eeccCCceEEECCCCCEEEEEecccCCceEEEEeCC---CCeEEEEEecC--------
Confidence            3667789998888877776   77779999999999999999998  46888888753   34555444443        


Q ss_pred             eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412         86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                              ..|.+++++|+|..+|++++..+.+..               ++...   ....+.
T Consensus       160 ------------------------~~P~~~a~~p~g~~vyv~~~~~~~v~v---------------i~~~~---~~v~~~  197 (381)
T COG3391         160 ------------------------NTPTGVAVDPDGNKVYVTNSDDNTVSV---------------IDTSG---NSVVRG  197 (381)
T ss_pred             ------------------------CCcceEEECCCCCeEEEEecCCCeEEE---------------EeCCC---cceecc
Confidence                                    467889999999999999863333322               22111   000100


Q ss_pred             cCccccCccccCCCCceeEEEEccCCCEEEEEeCCC--CcEEEEEecCCCCceEeeE-EeeCceecCCCceEEecCCCCC
Q psy11412        166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQ-IFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~--~~V~v~Dv~d~~~~~~v~~-i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      .+..     ..+....|..++++|||.++|+++..+  ++|.++|...   ...... .+.+.                 
T Consensus       198 ~~~~-----~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~---~~v~~~~~~~~~-----------------  252 (381)
T COG3391         198 SVGS-----LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT---GNVTATDLPVGS-----------------  252 (381)
T ss_pred             cccc-----ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC---ceEEEecccccc-----------------
Confidence            0000     012235678899999999999999776  5788777642   233332 22222                 


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                                   . .|.+++++|+|+.+||++..
T Consensus       253 -------------~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         253 -------------G-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             -------------C-CCCceeECCCCCEEEEEecC
Confidence                         1 58999999999999999663

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.3e-10  Score=111.08  Aligned_cols=156  Identities=15%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             CCC-CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         30 KVP-AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        30 ~v~-~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .++ ..|.+++++++|..+|+.+...+.|.++|...   .+....+..                                
T Consensus        70 ~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~v--------------------------------  114 (381)
T COG3391          70 SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPV--------------------------------  114 (381)
T ss_pred             cCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcc---cceeeEeee--------------------------------
Confidence            344 68899999999999999998889999999543   333433333                                


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      |..|++++++|+|+.+||++...             ....+..++..   ....++.++          .+..|.+++++
T Consensus       115 G~~P~~~~~~~~~~~vYV~n~~~-------------~~~~vsvid~~---t~~~~~~~~----------vG~~P~~~a~~  168 (381)
T COG3391         115 GLGPVGLAVDPDGKYVYVANAGN-------------GNNTVSVIDAA---TNKVTATIP----------VGNTPTGVAVD  168 (381)
T ss_pred             ccCCceEEECCCCCEEEEEeccc-------------CCceEEEEeCC---CCeEEEEEe----------cCCCcceEEEC
Confidence            35899999999999999998721             01122222221   122233222          22345789999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      |||.++|+++..++.|+++|...   .....  ...+.                         ....+..|+.++++|||
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~---~~v~~--~~~~~-------------------------~~~~~~~P~~i~v~~~g  218 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSG---NSVVR--GSVGS-------------------------LVGVGTGPAGIAVDPDG  218 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCC---cceec--ccccc-------------------------ccccCCCCceEEECCCC
Confidence            99999999998899999998532   22221  11110                         01112379999999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      +++||+|.
T Consensus       219 ~~~yV~~~  226 (381)
T COG3391         219 NRVYVAND  226 (381)
T ss_pred             CEEEEEec
Confidence            99999987

>KOG0315|consensus

Probab=99.21  E-value=2.4e-09  Score=94.67  Aligned_cols=209  Identities=18%  Similarity=0.238  Sum_probs=124.3

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceee------eEEeecc--
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV------GQIFLGG--   78 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~------~~i~~g~--   78 (290)
                      +.||.-+..|+....-.-..--.-....+..|.|--|||+.|+++ .+|++++||++.+.-.+..      ..+-+..  
T Consensus        58 a~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   58 AGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ  136 (311)
T ss_pred             ccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-CCceEEEEeccCcccchhccCCCCcceEEecCCc
Confidence            678999999998654211100001235788999999999999876 4899999999764332221      1111110  


Q ss_pred             --cc--cCCCceEEecCCCC----cCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceee
Q psy11412         79 --KI--QSDSGVTVIDDPEL----DKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFG  150 (290)
Q Consensus        79 --~~--~~~~~~~v~~~~~~----~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~  150 (290)
                        .+  ...++|.+-+..+.    +..|..        ....+.++..|||+.|..+|..++                ..
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~liPe~--------~~~i~sl~v~~dgsml~a~nnkG~----------------cy  192 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELIPED--------DTSIQSLTVMPDGSMLAAANNKGN----------------CY  192 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccCCCC--------CcceeeEEEcCCCcEEEEecCCcc----------------EE
Confidence              00  12345554443321    122221        246788999999999998886332                22


Q ss_pred             cceeeeeeecccccc-cCccccCccccCC-CCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceec
Q psy11412        151 SDEIMEFIQRNEMRS-MPLSSLGSWKYPA-RSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQ  228 (290)
Q Consensus       151 ~~~~~~~~~~~~i~~-~p~~~~~~~~~~~-~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~  228 (290)
                      .|+...   .+.... .|...     +.. ......+.||||+++|.++. .+.++.||.+.+-  .++ ...-.|++  
T Consensus       193 vW~l~~---~~~~s~l~P~~k-----~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~--~kl-e~~l~gh~--  258 (311)
T KOG0315|consen  193 VWRLLN---HQTASELEPVHK-----FQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDF--FKL-ELVLTGHQ--  258 (311)
T ss_pred             EEEccC---CCccccceEhhh-----eecccceEEEEEECCCCcEEEeec-CCceEEEEecCCc--eee-EEEeecCC--
Confidence            222211   000000 01100     111 24566789999999999887 7889999998652  122 22223331  


Q ss_pred             CCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        229 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                                                  ++.++-+||-||++|+.|.+  +-..|+
T Consensus       259 ----------------------------rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  259 ----------------------------RWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             ----------------------------ceEEeeeeccCccEEEecCCCCceeecc
Confidence                                        27899999999999999976  445555

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.16  E-value=2.6e-09  Score=95.31  Aligned_cols=149  Identities=21%  Similarity=0.325  Sum_probs=92.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeec
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKG  105 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--------g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~  105 (290)
                      .|+.++++|||+ ||+++...        |.|..++..  +....+   ..+                            
T Consensus        87 ~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~---~~~----------------------------  132 (246)
T PF08450_consen   87 RPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV---ADG----------------------------  132 (246)
T ss_dssp             EEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE---EEE----------------------------
T ss_pred             CCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--CeEEEE---ecC----------------------------
Confidence            789999999999 78876543        445555432  211111   111                            


Q ss_pred             cccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeE
Q psy11412        106 RRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTD  184 (290)
Q Consensus       106 ~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~  184 (290)
                         -..|.+|+|+|||++||+++.....+-.+.+..   .+..+..        ++....          .+.. ..|-+
T Consensus       133 ---~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~---~~~~~~~--------~~~~~~----------~~~~~g~pDG  188 (246)
T PF08450_consen  133 ---LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA---DGGELSN--------RRVFID----------FPGGPGYPDG  188 (246)
T ss_dssp             ---ESSEEEEEEETTSSEEEEEETTTTEEEEEEEET---TTCCEEE--------EEEEEE-----------SSSSCEEEE
T ss_pred             ---cccccceEECCcchheeecccccceeEEEeccc---cccceee--------eeeEEE----------cCCCCcCCCc
Confidence               157999999999999999887544333322211   1111110        011111          1111 34778


Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      ++++++|+ ||++.++.+.|.+||-.    .+++..|.+...                               .|-+++|
T Consensus       189 ~~vD~~G~-l~va~~~~~~I~~~~p~----G~~~~~i~~p~~-------------------------------~~t~~~f  232 (246)
T PF08450_consen  189 LAVDSDGN-LWVADWGGGRIVVFDPD----GKLLREIELPVP-------------------------------RPTNCAF  232 (246)
T ss_dssp             EEEBTTS--EEEEEETTTEEEEEETT----SCEEEEEE-SSS-------------------------------SEEEEEE
T ss_pred             ceEcCCCC-EEEEEcCCCEEEEECCC----ccEEEEEcCCCC-------------------------------CEEEEEE
Confidence            99999996 79999999999999753    467777776642                               7999999


Q ss_pred             -ccCCCEEEEEcC
Q psy11412        265 -SLDGKRIYVSSS  276 (290)
Q Consensus       265 -sPDG~~L~Van~  276 (290)
                       .||+++|||+.+
T Consensus       233 gg~~~~~L~vTta  245 (246)
T PF08450_consen  233 GGPDGKTLYVTTA  245 (246)
T ss_dssp             ESTTSSEEEEEEB
T ss_pred             ECCCCCEEEEEeC
Confidence             699999999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0315|consensus

Probab=99.03  E-value=5.4e-09  Score=92.47  Aligned_cols=147  Identities=18%  Similarity=0.286  Sum_probs=98.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+..+.++||++.|+++++  -.|++||+.. .++..+.++...                               ...+
T Consensus        41 sqVNrLeiTpdk~~LAaa~~--qhvRlyD~~S-~np~Pv~t~e~h-------------------------------~kNV   86 (311)
T KOG0315|consen   41 SQVNRLEITPDKKDLAAAGN--QHVRLYDLNS-NNPNPVATFEGH-------------------------------TKNV   86 (311)
T ss_pred             cceeeEEEcCCcchhhhccC--CeeEEEEccC-CCCCceeEEecc-------------------------------CCce
Confidence            36788999999999998876  5899999976 334344333221                               1456


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..+.|.-|||++|..+|               || ++.+||...+.-.+.             +.....+..|.++|+-.
T Consensus        87 taVgF~~dgrWMyTgse---------------Dg-t~kIWdlR~~~~qR~-------------~~~~spVn~vvlhpnQt  137 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSE---------------DG-TVKIWDLRSLSCQRN-------------YQHNSPVNTVVLHPNQT  137 (311)
T ss_pred             EEEEEeecCeEEEecCC---------------Cc-eEEEEeccCcccchh-------------ccCCCCcceEEecCCcc
Confidence            77999999999998777               33 555566543111111             11123466799999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      .|++++ .++.|.|||+..-.-...    .+..    ++                         -..+.+++.|||+.|.
T Consensus       138 eLis~d-qsg~irvWDl~~~~c~~~----liPe----~~-------------------------~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  138 ELISGD-QSGNIRVWDLGENSCTHE----LIPE----DD-------------------------TSIQSLTVMPDGSMLA  183 (311)
T ss_pred             eEEeec-CCCcEEEEEccCCccccc----cCCC----CC-------------------------cceeeEEEcCCCcEEE
Confidence            999998 588999999953111110    1111    00                         0357899999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      ++|.
T Consensus       184 a~nn  187 (311)
T KOG0315|consen  184 AANN  187 (311)
T ss_pred             EecC
Confidence            9988

>KOG2096|consensus

Probab=98.99  E-value=1.1e-08  Score=93.30  Aligned_cols=223  Identities=21%  Similarity=0.235  Sum_probs=115.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+++||.||++|++++ ++++|++|++.|-...+ -..+.                            +.... ..|.
T Consensus        88 ~vt~~~FsSdGK~lat~~-~Dr~Ir~w~~~DF~~~e-Hr~~R----------------------------~nve~-dhpT  136 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATIS-GDRSIRLWDVRDFENKE-HRCIR----------------------------QNVEY-DHPT  136 (420)
T ss_pred             ceeeeEEcCCCceeEEEe-CCceEEEEecchhhhhh-hhHhh----------------------------ccccC-CCce
Confidence            678999999999998776 58999999998732111 00000                            00111 4788


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCc---eeecceeeeeeecc--------------cccccC-ccccCccc
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDA---AFGSDEIMEFIQRN--------------EMRSMP-LSSLGSWK  175 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~---~~~~~~~~~~~~~~--------------~i~~~p-~~~~~~~~  175 (290)
                      -++|+||-+-+.|.-.-++.+-++.... ..+|+   ....+|-..|....              .+.+.. ...+-.|.
T Consensus       137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K-~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~  215 (420)
T KOG2096|consen  137 RVVFAPDCKSVVVSVKRGNKLCVYKLVK-KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD  215 (420)
T ss_pred             EEEECCCcceEEEEEccCCEEEEEEeee-cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe
Confidence            8999999877766543223222221000 00110   00011100010000              000000 00111232


Q ss_pred             cCCC---------CceeEEEEccCCCEEEEEeCCCCcEEEEEec--CCCCceEeeEE-e-eCc-----------------
Q psy11412        176 YPAR---------SMVTDILISLDDRYLYTSNWMHGDIRQYDIR--DTAHPVLVGQI-F-LGG-----------------  225 (290)
Q Consensus       176 ~~~~---------~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~--d~~~~~~v~~i-~-~Gg-----------------  225 (290)
                      +.+.         ..-++.++||||||+.++.+.- .|.||.+.  ..+....+.++ . -|.                 
T Consensus       216 lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  216 LKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             cCCceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            2211         1346789999999999999654 58999883  11221111110 0 011                 


Q ss_pred             eecCCCceEEecCCCCC-CCCCcceeecc-----cccCCcceEEEccCCCEEEEEcC----CCCCCCcccCCCC
Q psy11412        226 KIQSDSGVTVIDDPELD-KQPDPVIIKGR-----RFTGSSQMFQLSLDGKRIYVSSS----LFSPWDKEIYPDL  289 (290)
Q Consensus       226 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~-----~~~~~P~~~a~sPDG~~L~Van~----~~~~~~~~~~~~~  289 (290)
                      .+++||+.++||.+-.= .--+|..++-.     -.|+.|-.+.|||.|+.|+++..    .|...+-+-||++
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~  368 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL  368 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhH
Confidence            13889999999843210 01111111111     11456889999999999999976    4556666666654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=1.7e-08  Score=107.69  Aligned_cols=194  Identities=13%  Similarity=0.072  Sum_probs=102.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|++++|+|++..||+++.+.+.|++||..+.. ...   + .|......      .+..   ..      .......|
T Consensus       683 n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~~---~-~G~G~~~~------~~g~---~~------~~~~~~~P  742 (1057)
T PLN02919        683 NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TRV---F-SGDGYERN------LNGS---SG------TSTSFAQP  742 (1057)
T ss_pred             CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EEE---E-ecCCcccc------CCCC---cc------ccccccCc
Confidence            3789999999999999999999999999986521 111   1 11100000      0000   00      00012579


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcc-ccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSW-KYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~-~~~~~~~~~~i~~SpDG  191 (290)
                      .+|+|+|||++|||++...+.+.++...    .++... +-..+......+...  +...+. ....-..|.+|++++||
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~----tg~~~~-~~gg~~~~~~~l~~f--G~~dG~g~~~~l~~P~Gvavd~dG  815 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLK----TGGSRL-LAGGDPTFSDNLFKF--GDHDGVGSEVLLQHPLGVLCAKDG  815 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECC----CCcEEE-EEecccccCcccccc--cCCCCchhhhhccCCceeeEeCCC
Confidence            9999999999999998754433322111    111100 000000000000000  000000 00001357899999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      + ||+++.+++.|.+||...   ........+|..-..++..            .     ... -..|.++++++||+ |
T Consensus       816 ~-LYVADs~N~rIrviD~~t---g~v~tiaG~G~~G~~dG~~------------~-----~a~-l~~P~GIavd~dG~-l  872 (1057)
T PLN02919        816 Q-IYVADSYNHKIKKLDPAT---KRVTTLAGTGKAGFKDGKA------------L-----KAQ-LSEPAGLALGENGR-L  872 (1057)
T ss_pred             c-EEEEECCCCEEEEEECCC---CeEEEEeccCCcCCCCCcc------------c-----ccc-cCCceEEEEeCCCC-E
Confidence            7 899999999999999743   2222222222100000000            0     000 13699999999996 8


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      |||+.
T Consensus       873 yVaDt  877 (1057)
T PLN02919        873 FVADT  877 (1057)
T ss_pred             EEEEC
Confidence            88865

>KOG0266|consensus

Probab=98.93  E-value=3.5e-08  Score=96.41  Aligned_cols=156  Identities=20%  Similarity=0.312  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|||||++|+.+. .+.+|++||+.+.  ...+..+. |+                              ...+.
T Consensus       205 ~v~~~~fs~d~~~l~s~s-~D~tiriwd~~~~--~~~~~~l~-gH------------------------------~~~v~  250 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGS-DDKTLRIWDLKDD--GRNLKTLK-GH------------------------------STYVT  250 (456)
T ss_pred             ceeeeEECCCCcEEEEec-CCceEEEeeccCC--CeEEEEec-CC------------------------------CCceE
Confidence            577899999999887655 5899999999442  23333332 32                              03567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDGr  192 (290)
                      .++|+|+|+.++..+-                ++.+.+|++..   ...+..          +.. ......++|++||+
T Consensus       251 ~~~f~p~g~~i~Sgs~----------------D~tvriWd~~~---~~~~~~----------l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  251 SVAFSPDGNLLVSGSD----------------DGTVRIWDVRT---GECVRK----------LKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             EEEecCCCCEEEEecC----------------CCcEEEEeccC---CeEEEe----------eeccCCceEEEEECCCCC
Confidence            7999999955554332                22343444432   111111          111 24677899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||+... ....+..+ .+..                 .+           .-...+.|+|+|++|+
T Consensus       302 ~l~s~s-~d~~i~vwd~~~~-~~~~~~~~-~~~~-----------------~~-----------~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  302 LLVSAS-YDGTIRVWDLETG-SKLCLKLL-SGAE-----------------NS-----------APVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEEcC-CCccEEEEECCCC-ceeeeecc-cCCC-----------------CC-----------CceeEEEECCCCcEEE
Confidence            999997 6999999999532 11111111 1110                 00           0137899999999999


Q ss_pred             EEcC--CCCCCCc
Q psy11412        273 VSSS--LFSPWDK  283 (290)
Q Consensus       273 Van~--~~~~~~~  283 (290)
                      ++..  ..+.|+-
T Consensus       351 ~~~~d~~~~~w~l  363 (456)
T KOG0266|consen  351 SASLDRTLKLWDL  363 (456)
T ss_pred             EecCCCeEEEEEc
Confidence            9965  5666653

>KOG0639|consensus

Probab=98.90  E-value=1.8e-08  Score=96.36  Aligned_cols=158  Identities=20%  Similarity=0.314  Sum_probs=105.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +.-++++++|...|++|+.+  .|.|.|||+..+++...+.++..-                             ..+..
T Consensus       419 GEvVcAvtIS~~trhVyTgG--kgcVKVWdis~pg~k~PvsqLdcl-----------------------------~rdny  467 (705)
T KOG0639|consen  419 GEVVCAVTISNPTRHVYTGG--KGCVKVWDISQPGNKSPVSQLDCL-----------------------------NRDNY  467 (705)
T ss_pred             CcEEEEEEecCCcceeEecC--CCeEEEeeccCCCCCCcccccccc-----------------------------Ccccc
Confidence            44688999999999999764  689999999875443333332211                             11256


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD  190 (290)
                      .|...++|||++|.|..|+                .++.+||+.... + .+.      .   .++ ....++++++|||
T Consensus       468 iRSckL~pdgrtLivGGea----------------stlsiWDLAapT-p-rik------a---eltssapaCyALa~spD  520 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEA----------------STLSIWDLAAPT-P-RIK------A---ELTSSAPACYALAISPD  520 (705)
T ss_pred             eeeeEecCCCceEEecccc----------------ceeeeeeccCCC-c-chh------h---hcCCcchhhhhhhcCCc
Confidence            7889999999999998772                245556654310 0 111      0   111 1246788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      .+..|... .++.|.|||+-+   ..++.++. |.                              .++..-|.+|+||..
T Consensus       521 akvcFscc-sdGnI~vwDLhn---q~~Vrqfq-Gh------------------------------tDGascIdis~dGtk  565 (705)
T KOG0639|consen  521 AKVCFSCC-SDGNIAVWDLHN---QTLVRQFQ-GH------------------------------TDGASCIDISKDGTK  565 (705)
T ss_pred             cceeeeec-cCCcEEEEEccc---ceeeeccc-CC------------------------------CCCceeEEecCCCce
Confidence            99998777 899999999965   23443321 22                              125677999999999


Q ss_pred             EEEEcC--CCCCCC
Q psy11412        271 IYVSSS--LFSPWD  282 (290)
Q Consensus       271 L~Van~--~~~~~~  282 (290)
                      ||...-  +.--||
T Consensus       566 lWTGGlDntvRcWD  579 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWD  579 (705)
T ss_pred             eecCCCccceeehh
Confidence            998743  445565

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.88  E-value=8.1e-08  Score=102.49  Aligned_cols=189  Identities=16%  Similarity=0.147  Sum_probs=101.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+|..+++++++..||+++.+.+.|.+||...    ..+..+  ++. .+.+.    .+.++...         . -..|
T Consensus       568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i~~i--g~~-g~~G~----~dG~~~~a---------~-f~~P  626 (1057)
T PLN02919        568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFIVQI--GST-GEEGL----RDGSFEDA---------T-FNRP  626 (1057)
T ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEeCCC----CEEEEE--ccC-CCcCC----CCCchhcc---------c-cCCC
Confidence            47889999999999999999999999999742    122111  210 00000    00000000         0 1479


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcccc---CCCCceeEEEEcc
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY---PARSMVTDILISL  189 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~---~~~~~~~~i~~Sp  189 (290)
                      ++|+|+++|..|||++...+.+-++..     .++.+.     .+......    .....+...   ..-+.|.+|+|+|
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~-----~~~~V~-----tlag~G~~----g~~~~gg~~~~~~~ln~P~gVa~dp  692 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDF-----VNETVR-----TLAGNGTK----GSDYQGGKKGTSQVLNSPWDVCFEP  692 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEec-----CCCEEE-----EEeccCcc----cCCCCCChhhhHhhcCCCeEEEEec
Confidence            999999999999998763222211110     011110     00000000    000000000   0013578999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      ++..||+++.+++.|.+||..+.   . +..+...|..      ...+.    ..+.      .....+|.+|+|+|||+
T Consensus       693 ~~g~LyVad~~~~~I~v~d~~~g---~-v~~~~G~G~~------~~~~g----~~~~------~~~~~~P~GIavspdG~  752 (1057)
T PLN02919        693 VNEKVYIAMAGQHQIWEYNISDG---V-TRVFSGDGYE------RNLNG----SSGT------STSFAQPSGISLSPDLK  752 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEECCCC---e-EEEEecCCcc------ccCCC----Cccc------cccccCccEEEEeCCCC
Confidence            88899999999999999998541   1 1111111100      00000    0000      00013799999999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +|||++.
T Consensus       753 ~LYVADs  759 (1057)
T PLN02919        753 ELYIADS  759 (1057)
T ss_pred             EEEEEEC
Confidence            9999976

>PTZ00421 coronin; Provisional

Probab=98.85  E-value=4.2e-07  Score=89.70  Aligned_cols=175  Identities=14%  Similarity=0.204  Sum_probs=101.0

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCce----eeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPV----LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~----~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .+.+++|+| |+++|++++. +++|++||+.+.....    .+..+ .+                            +  
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L-~g----------------------------H--  124 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHL-QG----------------------------H--  124 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeC-CCEEEEEecCCCccccccCcceEEe-cC----------------------------C--
Confidence            578999999 8898887765 8999999996532110    11111 11                            0  


Q ss_pred             CCCceEEEEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        109 TGSSQMFQLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       109 g~gPr~vafsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      ...+..++|+|++ ..|+.++.                ++.+.+||+..   .+.+..+     .+    .......+++
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~----------------DgtVrIWDl~t---g~~~~~l-----~~----h~~~V~sla~  176 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGA----------------DMVVNVWDVER---GKAVEVI-----KC----HSDQITSLEW  176 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeC----------------CCEEEEEECCC---CeEEEEE-----cC----CCCceEEEEE
Confidence            1457789999997 45665443                22444455432   1111110     01    1235778999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe--------------eCcee-------cCCCceEEecCCCCCCCCC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF--------------LGGKI-------QSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~--------------~Gg~~-------~~~~~v~~~~~~~~~~~~~  246 (290)
                      +|||+.|+++. .++.|.+||+.+..   .+.++.              .++.+       ..++.|.+||..... .|.
T Consensus       177 spdG~lLatgs-~Dg~IrIwD~rsg~---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-~p~  251 (493)
T PTZ00421        177 NLDGSLLCTTS-KDKKLNIIDPRDGT---IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-SPY  251 (493)
T ss_pred             ECCCCEEEEec-CCCEEEEEECCCCc---EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-Cce
Confidence            99999998888 68999999985421   111110              00111       235679999975432 111


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                      .  ..............|+|||+.||++.
T Consensus       252 ~--~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        252 S--TVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             e--EeccCCCCceEEEEEcCCCCEEEEEE
Confidence            1  11111111234457899999999875

>KOG0291|consensus

Probab=98.82  E-value=2.1e-07  Score=92.71  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....++.||||+++++.+ .+|+|.|||...   .-++-+. ..                     |         .+++.
T Consensus       352 ~i~~l~YSpDgq~iaTG~-eDgKVKvWn~~S---gfC~vTF-te---------------------H---------ts~Vt  396 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGA-EDGKVKVWNTQS---GFCFVTF-TE---------------------H---------TSGVT  396 (893)
T ss_pred             ceeeEEECCCCcEEEecc-CCCcEEEEeccC---ceEEEEe-cc---------------------C---------CCceE
Confidence            456899999999998766 589999999754   2232211 10                     0         26788


Q ss_pred             EEEEccCCCEEEEEcCCCCC---cceeeccccc----------------CCCceeec-------ceeeeeeecccccccC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSP---WDKEIYPDLV----------------KTDAAFGS-------DEIMEFIQRNEMRSMP  167 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~---~d~~~~~~~~----------------~~g~~~~~-------~~~~~~~~~~~i~~~p  167 (290)
                      .+.|+..|+.+..+ .|.++   ||.-.|.+..                ..|..+..       +-++++.+.+.+-   
T Consensus       397 ~v~f~~~g~~llss-SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---  472 (893)
T KOG0291|consen  397 AVQFTARGNVLLSS-SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---  472 (893)
T ss_pred             EEEEEecCCEEEEe-ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---
Confidence            89999999988855 45444   4442211100                01211111       1111111111100   


Q ss_pred             ccccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        168 LSSLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       168 ~~~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                             .+.+. +.+..+.|+|+|..||.+.| +.+|.+||+-+.  ...+.++.+-.                     
T Consensus       473 -------iLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s--~~~vEtl~i~s---------------------  521 (893)
T KOG0291|consen  473 -------ILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSS--SGTVETLEIRS---------------------  521 (893)
T ss_pred             -------hhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeecc--CceeeeEeecc---------------------
Confidence                   12222 35677899999999999996 789999999542  22334433322                     


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                 ..-.++|+|||+.|+||.-
T Consensus       522 -----------dvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  522 -----------DVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             -----------ceeEEEEcCCCCeEEEEEe
Confidence                       3567999999999999853

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=1.8e-07  Score=86.11  Aligned_cols=65  Identities=25%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             EEEEccCCCEEEEEeC----CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        184 DILISLDDRYLYTSNW----MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r----~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      +-+|||||++||++.-    +.+.|-|||+.  ...+.+++++++|-                               +|
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GP  101 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GP  101 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCc-------------------------------Ch
Confidence            3568888888887632    35789999986  35788999999883                               79


Q ss_pred             ceEEEccCCCEEEEEcCCCCCC
Q psy11412        260 QMFQLSLDGKRIYVSSSLFSPW  281 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~~~~~~  281 (290)
                      ..+.+.|||+.|.|||..+...
T Consensus       102 Hel~l~pDG~tLvVANGGI~Th  123 (305)
T PF07433_consen  102 HELLLMPDGETLVVANGGIETH  123 (305)
T ss_pred             hhEEEcCCCCEEEEEcCCCccC
Confidence            9999999999999999977655

>KOG1446|consensus

Probab=98.78  E-value=3.7e-07  Score=83.00  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=94.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..|..+|-+....++.+ +.+|++||+....   ..+-+..                                 .++-
T Consensus       102 ~V~sL~~sP~~d~FlS~S~-D~tvrLWDlR~~~---cqg~l~~---------------------------------~~~p  144 (311)
T KOG1446|consen  102 RVNSLSVSPKDDTFLSSSL-DKTVRLWDLRVKK---CQGLLNL---------------------------------SGRP  144 (311)
T ss_pred             eEEEEEecCCCCeEEeccc-CCeEEeeEecCCC---CceEEec---------------------------------CCCc
Confidence            5788999999887776665 7899999997432   2222212                                 1333


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC--CCceeEEEEccCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA--RSMVTDILISLDD  191 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~--~~~~~~i~~SpDG  191 (290)
                      -.||+|.|-.++++++..                .+...|+..+         ..+.+....+..  ...-.+|.|||||
T Consensus       145 i~AfDp~GLifA~~~~~~----------------~IkLyD~Rs~---------dkgPF~tf~i~~~~~~ew~~l~FS~dG  199 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSE----------------LIKLYDLRSF---------DKGPFTTFSITDNDEAEWTDLEFSPDG  199 (311)
T ss_pred             ceeECCCCcEEEEecCCC----------------eEEEEEeccc---------CCCCceeEccCCCCccceeeeEEcCCC
Confidence            479999999888887621                1211222111         000010001111  1234679999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      |++.++. .++.+.++|--+   ..++.+...--            .                -+.-|-+..|+|||+++
T Consensus       200 K~iLlsT-~~s~~~~lDAf~---G~~~~tfs~~~------------~----------------~~~~~~~a~ftPds~Fv  247 (311)
T KOG1446|consen  200 KSILLST-NASFIYLLDAFD---GTVKSTFSGYP------------N----------------AGNLPLSATFTPDSKFV  247 (311)
T ss_pred             CEEEEEe-CCCcEEEEEccC---CcEeeeEeecc------------C----------------CCCcceeEEECCCCcEE
Confidence            9999998 677888887644   22333222110            0                01146789999999999


Q ss_pred             EEEcC--CCCCCCc
Q psy11412        272 YVSSS--LFSPWDK  283 (290)
Q Consensus       272 ~Van~--~~~~~~~  283 (290)
                      +.+..  .+-.|+-
T Consensus       248 l~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  248 LSGSDDGTIHVWNL  261 (311)
T ss_pred             EEecCCCcEEEEEc
Confidence            99855  5666654

>KOG0266|consensus

Probab=98.77  E-value=2e-07  Score=91.07  Aligned_cols=155  Identities=22%  Similarity=0.278  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....+.||+||++|+.+. .++.+++|+...... ..+..+ .++                              ..+.+
T Consensus       161 sv~~~~fs~~g~~l~~~~-~~~~i~~~~~~~~~~-~~~~~l-~~h------------------------------~~~v~  207 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAAS-SDGLIRIWKLEGIKS-NLLREL-SGH------------------------------TRGVS  207 (456)
T ss_pred             ceEEEEEcCCCCeEEEcc-CCCcEEEeecccccc-hhhccc-ccc------------------------------cccee
Confidence            455689999999976555 588999999843221 111111 111                              14778


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|||+++..++.                +..+.++++..  ....+++     +.+    .....+.++|+|+|+.
T Consensus       208 ~~~fs~d~~~l~s~s~----------------D~tiriwd~~~--~~~~~~~-----l~g----H~~~v~~~~f~p~g~~  260 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSD----------------DKTLRIWDLKD--DGRNLKT-----LKG----HSTYVTSVAFSPDGNL  260 (456)
T ss_pred             eeEECCCCcEEEEecC----------------CceEEEeeccC--CCeEEEE-----ecC----CCCceEEEEecCCCCE
Confidence            8999999996665443                33455555511  0112221     111    2356789999999955


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                       ++|...+++|.+||+..   .+.+..+.. .+                              +....++|++||+.|++
T Consensus       261 -i~Sgs~D~tvriWd~~~---~~~~~~l~~-hs------------------------------~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  261 -LVSGSDDGTVRIWDVRT---GECVRKLKG-HS------------------------------DGISGLAFSPDGNLLVS  305 (456)
T ss_pred             -EEEecCCCcEEEEeccC---CeEEEeeec-cC------------------------------CceEEEEECCCCCEEEE
Confidence             55555899999999953   233333322 10                              14677999999999999


Q ss_pred             EcC--CCCCCCc
Q psy11412        274 SSS--LFSPWDK  283 (290)
Q Consensus       274 an~--~~~~~~~  283 (290)
                      +..  .+..||.
T Consensus       306 ~s~d~~i~vwd~  317 (456)
T KOG0266|consen  306 ASYDGTIRVWDL  317 (456)
T ss_pred             cCCCccEEEEEC
Confidence            953  6666664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.76  E-value=9.8e-07  Score=76.25  Aligned_cols=146  Identities=25%  Similarity=0.324  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..+.++|++++|+++. .++.|.+||+...   +.+..+...                               ....
T Consensus       136 ~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~---~~~~~~~~~-------------------------------~~~i  180 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSS-QDGTIKLWDLRTG---KCVATLTGH-------------------------------TGEV  180 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEc-CCCcEEEEEcccc---ccceeEecC-------------------------------cccc
Confidence            3578999999999988776 4789999998642   222222111                               1357


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..+.|+|+++.+++++.               ++ .+..++...   .+.+....         ........+.++||++
T Consensus       181 ~~~~~~~~~~~l~~~~~---------------~~-~i~i~d~~~---~~~~~~~~---------~~~~~i~~~~~~~~~~  232 (289)
T cd00200         181 NSVAFSPDGEKLLSSSS---------------DG-TIKLWDLST---GKCLGTLR---------GHENGVNSVAFSPDGY  232 (289)
T ss_pred             ceEEECCCcCEEEEecC---------------CC-cEEEEECCC---Cceecchh---------hcCCceEEEEEcCCCc
Confidence            78999999999998765               11 232233221   11111100         0123567799999988


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +++++. .++.|.+||+..   ...+..+. +.                              ...+..+.|+|+|++|+
T Consensus       233 ~~~~~~-~~~~i~i~~~~~---~~~~~~~~-~~------------------------------~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         233 LLASGS-EDGTIRVWDLRT---GECVQTLS-GH------------------------------TNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             EEEEEc-CCCcEEEEEcCC---ceeEEEcc-cc------------------------------CCcEEEEEECCCCCEEE
Confidence            777665 688999999853   23333332 11                              01478899999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      ++..
T Consensus       278 ~~~~  281 (289)
T cd00200         278 SGSA  281 (289)
T ss_pred             EecC
Confidence            9865

>KOG1407|consensus

Probab=98.76  E-value=2.3e-07  Score=82.79  Aligned_cols=113  Identities=18%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .-..++.||||.++++.+- ++.|..+|...-   +....-..                                -....
T Consensus       108 eni~i~wsp~g~~~~~~~k-dD~it~id~r~~---~~~~~~~~--------------------------------~~e~n  151 (313)
T KOG1407|consen  108 ENINITWSPDGEYIAVGNK-DDRITFIDARTY---KIVNEEQF--------------------------------KFEVN  151 (313)
T ss_pred             cceEEEEcCCCCEEEEecC-cccEEEEEeccc---ceeehhcc--------------------------------cceee
Confidence            4456889999999999986 779999997642   11110000                                03456


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++++-++..++.+|.++                .   +++......+++.++..         .+....-|.|+||||+
T Consensus       152 e~~w~~~nd~Fflt~GlG----------------~---v~ILsypsLkpv~si~A---------H~snCicI~f~p~Gry  203 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLG----------------C---VEILSYPSLKPVQSIKA---------HPSNCICIEFDPDGRY  203 (313)
T ss_pred             eeeecCCCCEEEEecCCc----------------e---EEEEecccccccccccc---------CCcceEEEEECCCCce
Confidence            689998999888887632                1   12222222222222111         2345778999999999


Q ss_pred             EEEEeCCCCcEEEEEecC
Q psy11412        194 LYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +++.. .+..+++||+.+
T Consensus       204 fA~Gs-ADAlvSLWD~~E  220 (313)
T KOG1407|consen  204 FATGS-ADALVSLWDVDE  220 (313)
T ss_pred             Eeecc-ccceeeccChhH
Confidence            98887 688999999964

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.72  E-value=8.7e-07  Score=76.98  Aligned_cols=59  Identities=20%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             eeEEEEccCCCEEEEEeCC--CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        182 VTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~--~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ...|.+||+|++|.+++.+  .+.|.+||+.+   .+.+......                                 ..
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~~~---------------------------------~~  146 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK---KKKISTFEHS---------------------------------DA  146 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECCC---CEEeeccccC---------------------------------cE
Confidence            3469999999999998765  36799999963   4444433211                                 35


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ..+++||||++|+++..
T Consensus       147 t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEEEEcCCCCEEEEEEe
Confidence            67999999999999865

>KOG0318|consensus

Probab=98.71  E-value=4.1e-07  Score=87.61  Aligned_cols=184  Identities=16%  Similarity=0.198  Sum_probs=107.4

Q ss_pred             ceEEEE-EcCCCCEEEEEeCCCCeEEEEEcCCCCCceeee-EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDIL-ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va-~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~-~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ++.-+| +||.|-|++..+ ..|+|++||....  -..+. ++.+                               ..+.
T Consensus        60 ~~vtVAkySPsG~yiASGD-~sG~vRIWdtt~~--~hiLKnef~v-------------------------------~aG~  105 (603)
T KOG0318|consen   60 HQVTVAKYSPSGFYIASGD-VSGKVRIWDTTQK--EHILKNEFQV-------------------------------LAGP  105 (603)
T ss_pred             ceeEEEEeCCCceEEeecC-CcCcEEEEeccCc--ceeeeeeeee-------------------------------cccc
Confidence            455554 999999987665 4899999998642  12221 1100                               0023


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceee-cccccCCC---ceeecceeeeeeecccccccCcc------ccCcc------c
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEI-YPDLVKTD---AAFGSDEIMEFIQRNEMRSMPLS------SLGSW------K  175 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~-~~~~~~~g---~~~~~~~~~~~~~~~~i~~~p~~------~~~~~------~  175 (290)
                      .-.++++.|++++.++.|........+ ++.....|   +.-..++..++.+.++.+.+...      .++|-      .
T Consensus       106 I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s  185 (603)
T KOG0318|consen  106 IKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS  185 (603)
T ss_pred             cccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec
Confidence            456999999999999998543333322 22111111   12223445555444433321110      01110      0


Q ss_pred             cCC-CCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412        176 YPA-RSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       176 ~~~-~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                      .-+ ...+..+.+||||.+...+. .++.|.+||=.+   ...++.+.-..                   +|        
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~g-sDgki~iyDGkt---ge~vg~l~~~~-------------------aH--------  234 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAG-SDGKIYIYDGKT---GEKVGELEDSD-------------------AH--------  234 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEec-CCccEEEEcCCC---ccEEEEecCCC-------------------Cc--------
Confidence            000 13588899999999977766 799999997532   44555443211                   11        


Q ss_pred             ccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        255 FTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       255 ~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                       .|...++++|||+++++.+++  +.+-||-
T Consensus       235 -kGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  235 -KGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             -cccEEEEEECCCCceEEEecCCceEEEEEe
Confidence             135899999999999999977  6666763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=1.5e-06  Score=84.25  Aligned_cols=31  Identities=13%  Similarity=-0.012  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d   64 (290)
                      .....++||||++|+.+...+  ..|.+||+..
T Consensus       197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~  229 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT  229 (427)
T ss_pred             CcccceEcCCCCEEEEEEccCCCcEEEEEECCC
Confidence            345789999999987765433  4599999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.69  E-value=3.2e-06  Score=73.05  Aligned_cols=144  Identities=22%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ...+.++|++++|++++. +|.|.+|++....   .+..+...                               ...+..
T Consensus        54 i~~~~~~~~~~~l~~~~~-~~~i~i~~~~~~~---~~~~~~~~-------------------------------~~~i~~   98 (289)
T cd00200          54 VRDVAASADGTYLASGSS-DKTIRLWDLETGE---CVRTLTGH-------------------------------TSYVSS   98 (289)
T ss_pred             eeEEEECCCCCEEEEEcC-CCeEEEEEcCccc---ceEEEecc-------------------------------CCcEEE
Confidence            458999999999988875 8999999997532   12111110                               135778


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      +.|+|+++.+++...               ++ .+..++...   .+.+..+.         ........+.++|++++|
T Consensus        99 ~~~~~~~~~~~~~~~---------------~~-~i~~~~~~~---~~~~~~~~---------~~~~~i~~~~~~~~~~~l  150 (289)
T cd00200          99 VAFSPDGRILSSSSR---------------DK-TIKVWDVET---GKCLTTLR---------GHTDWVNSVAFSPDGTFV  150 (289)
T ss_pred             EEEcCCCCEEEEecC---------------CC-eEEEEECCC---cEEEEEec---------cCCCcEEEEEEcCcCCEE
Confidence            999999888887653               12 233333321   11111100         012356789999999998


Q ss_pred             EEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEE
Q psy11412        195 YTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Va  274 (290)
                      +++. .++.|.+||+..   .+.+..+....                               +....+.|+|+|+.|+++
T Consensus       151 ~~~~-~~~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~l~~~  195 (289)
T cd00200         151 ASSS-QDGTIKLWDLRT---GKCVATLTGHT-------------------------------GEVNSVAFSPDGEKLLSS  195 (289)
T ss_pred             EEEc-CCCcEEEEEccc---cccceeEecCc-------------------------------cccceEEECCCcCEEEEe
Confidence            8876 578999999853   22233222111                               146789999999988888


Q ss_pred             cC
Q psy11412        275 SS  276 (290)
Q Consensus       275 n~  276 (290)
                      +.
T Consensus       196 ~~  197 (289)
T cd00200         196 SS  197 (289)
T ss_pred             cC
Confidence            64

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=1.4e-06  Score=84.58  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=24.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRD   64 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d   64 (290)
                      .+++....++||||++|+.+...+|  .|.+||+..
T Consensus       241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3444556899999999987643344  588888854

>KOG1539|consensus

Probab=98.66  E-value=6e-07  Score=90.33  Aligned_cols=146  Identities=18%  Similarity=0.303  Sum_probs=101.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ..+.+.+++++--++.+.++++ +|-+..||+..   ..++.++.+|                                .
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~-~Gilkfw~f~~---k~l~~~l~l~--------------------------------~  535 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGA-DGILKFWDFKK---KVLKKSLRLG--------------------------------S  535 (910)
T ss_pred             ccCceeEEEecCCCceEEEccC-cceEEEEecCC---cceeeeeccC--------------------------------C
Confidence            4557889999988888876665 89999999965   2355555444                                5


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+.++..|..-..+.+++.                .-.   +.+.|..+++.++.     +.|    .++...++.||||
T Consensus       536 ~~~~iv~hr~s~l~a~~~d----------------df~---I~vvD~~t~kvvR~-----f~g----h~nritd~~FS~D  587 (910)
T KOG1539|consen  536 SITGIVYHRVSDLLAIALD----------------DFS---IRVVDVVTRKVVRE-----FWG----HGNRITDMTFSPD  587 (910)
T ss_pred             CcceeeeeehhhhhhhhcC----------------cee---EEEEEchhhhhhHH-----hhc----cccceeeeEeCCC
Confidence            6677888888877777654                112   22333222333331     111    3467889999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ||+|.++. .+++|.+||+..   ..+|.-+.+..                                -+-.+.|||.|.+
T Consensus       588 grWlisas-mD~tIr~wDlpt---~~lID~~~vd~--------------------------------~~~sls~SPngD~  631 (910)
T KOG1539|consen  588 GRWLISAS-MDSTIRTWDLPT---GTLIDGLLVDS--------------------------------PCTSLSFSPNGDF  631 (910)
T ss_pred             CcEEEEee-cCCcEEEEeccC---cceeeeEecCC--------------------------------cceeeEECCCCCE
Confidence            99999998 899999999953   34555443322                                3578999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      |+++..
T Consensus       632 LAT~Hv  637 (910)
T KOG1539|consen  632 LATVHV  637 (910)
T ss_pred             EEEEEe
Confidence            999866

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.66  E-value=1.3e-06  Score=77.87  Aligned_cols=125  Identities=17%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      |.++++...+..||+++.  +.+.++|..+ +..+.+.....+.                            .....|..
T Consensus        42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~-g~~~~~~~~~~~~----------------------------~~~~~~ND   90 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADS--GGIAVVDPDT-GKVTVLADLPDGG----------------------------VPFNRPND   90 (246)
T ss_dssp             EEEEEEECTTSEEEEEET--TCEEEEETTT-TEEEEEEEEETTC----------------------------SCTEEEEE
T ss_pred             CceEEEEccCCEEEEEEc--CceEEEecCC-CcEEEEeeccCCC----------------------------cccCCCce
Confidence            888888843466777775  4556667654 2222222211110                            01257899


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++++|+|+ ||+++.........       ..+.+..++..     ..+..+         ...-..|.+|+|||||+.|
T Consensus        91 ~~vd~~G~-ly~t~~~~~~~~~~-------~~g~v~~~~~~-----~~~~~~---------~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   91 VAVDPDGN-LYVTDSGGGGASGI-------DPGSVYRIDPD-----GKVTVV---------ADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEE-TTS--EEEEEECCBCTTCG-------GSEEEEEEETT-----SEEEEE---------EEEESSEEEEEEETTSSEE
T ss_pred             EEEcCCCC-EEEEecCCCccccc-------cccceEEECCC-----CeEEEE---------ecCcccccceEECCcchhe
Confidence            99999999 88876522111000       00112111110     001000         0001357889999999999


Q ss_pred             EEEeCCCCcEEEEEecCC
Q psy11412        195 YTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d~  212 (290)
                      |+++-..+.|..|++...
T Consensus       149 yv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEETTTTEEEEEEEETT
T ss_pred             eecccccceeEEEecccc
Confidence            999988999999999643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=1e-06  Score=85.29  Aligned_cols=49  Identities=16%  Similarity=0.096  Sum_probs=29.6

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      -.+.|+..++.....   ..++.....++||||++|+.+...+|...+|.++
T Consensus       222 I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        222 VYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             EEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            345566554432211   2344556789999999998654446666666653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.65  E-value=1.6e-06  Score=79.86  Aligned_cols=200  Identities=22%  Similarity=0.227  Sum_probs=112.0

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCc-eEEEEEcCCCCEEEEE----eCCCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAM-VTDILISLDDRYLYTS----NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQ   81 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~va~SpDGr~Lyva----~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~   81 (290)
                      |+|  .-|+|...++....+ ..+-+.+ --|-+|||||++||++    ..+.|.|-|||...  ..+.++++..+    
T Consensus        27 G~~--~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~----   97 (305)
T PF07433_consen   27 GTF--ALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSH----   97 (305)
T ss_pred             CcE--EEEEEcCCCceeeEE-cCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCC----
Confidence            555  357888888777665 2222223 3378999999999998    22468899999863  46777776554    


Q ss_pred             CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc
Q psy11412         82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN  161 (290)
Q Consensus        82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (290)
                                                 |-+|+.+.+.|||++|.|+|....+--     +   .|....-++...   +.
T Consensus        98 ---------------------------GIGPHel~l~pDG~tLvVANGGI~Thp-----d---~GR~kLNl~tM~---ps  139 (305)
T PF07433_consen   98 ---------------------------GIGPHELLLMPDGETLVVANGGIETHP-----D---SGRAKLNLDTMQ---PS  139 (305)
T ss_pred             ---------------------------CcChhhEEEcCCCCEEEEEcCCCccCc-----c---cCceecChhhcC---Cc
Confidence                                       368999999999999999997432210     0   010000011111   00


Q ss_pred             cccc-cCccc-cCccccCCC---CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEe
Q psy11412        162 EMRS-MPLSS-LGSWKYPAR---SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI  236 (290)
Q Consensus       162 ~i~~-~p~~~-~~~~~~~~~---~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~  236 (290)
                      .+.. ...+. ++-|.+|..   ...+++++++||+.++.--+ ++.       ....+-+++...-|+      .++..
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~-qg~-------~~~~~PLva~~~~g~------~~~~~  205 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY-QGD-------PGDAPPLVALHRRGG------ALRLL  205 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec-CCC-------CCccCCeEEEEcCCC------cceec
Confidence            0000 00111 122334332   35789999999988775442 221       111233444433332      12222


Q ss_pred             cCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        237 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      +..+.         .-.++.++--+|++++||+++++++-
T Consensus       206 ~~p~~---------~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  206 PAPEE---------QWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cCChH---------HHHhhCCceEEEEEeCCCCEEEEECC
Confidence            21110         01233456788999999999988854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=1.3e-06  Score=84.67  Aligned_cols=50  Identities=26%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRD   64 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d   64 (290)
                      -.+.|+..++.....   ..++.....++||||+.|+.+...+|  .|.+||+..
T Consensus       228 i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        228 VYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             EEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            455666654433222   23344557789999999876543344  466777754

>PTZ00420 coronin; Provisional

Probab=98.65  E-value=2.2e-06  Score=85.80  Aligned_cols=118  Identities=12%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCc-ee----eeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         33 AMVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHP-VL----VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        33 ~~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~-~~----~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      +.+..++|+|+ +.+|++++ .+++|++||+...... ..    +..+ .+                            +
T Consensus        75 ~~V~~lafsP~~~~lLASgS-~DgtIrIWDi~t~~~~~~~i~~p~~~L-~g----------------------------H  124 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGS-EDLTIRVWEIPHNDESVKEIKDPQCIL-KG----------------------------H  124 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCCccccccccceEEe-ec----------------------------C
Confidence            35789999997 67777665 5899999999653211 10    0000 01                            0


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                        ......++|||++..+.++...               ++.+.+||+..   .+.+..          +..+.....+.
T Consensus       125 --~~~V~sVaf~P~g~~iLaSgS~---------------DgtIrIWDl~t---g~~~~~----------i~~~~~V~Sls  174 (568)
T PTZ00420        125 --KKKISIIDWNPMNYYIMCSSGF---------------DSFVNIWDIEN---EKRAFQ----------INMPKKLSSLK  174 (568)
T ss_pred             --CCcEEEEEECCCCCeEEEEEeC---------------CCeEEEEECCC---CcEEEE----------EecCCcEEEEE
Confidence              1457889999999987655431               22344454432   111111          11123467899


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |+|||+.|++++ .++.|.+||+..
T Consensus       175 wspdG~lLat~s-~D~~IrIwD~Rs  198 (568)
T PTZ00420        175 WNIKGNLLSGTC-VGKHMHIIDPRK  198 (568)
T ss_pred             ECCCCCEEEEEe-cCCEEEEEECCC
Confidence            999999998887 578999999853

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=8.7e-07  Score=85.84  Aligned_cols=175  Identities=17%  Similarity=0.100  Sum_probs=87.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+.++||||++|+.+.+.+  ..|.+||+.. +..+.+...  .                                ..
T Consensus       205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~~~--~--------------------------------g~  249 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVASF--R--------------------------------GH  249 (429)
T ss_pred             ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEecC--C--------------------------------Cc
Confidence            456789999999987765433  4799999864 223333210  0                                11


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      -..++|||||++|+++....+.++.+.             ++...   . .+..+..         .........+||||
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~-------------~d~~~---~-~~~~lt~---------~~~~~~~~~wSpDG  303 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYV-------------MGANG---G-TPSQLTS---------GAGNNTEPSWSPDG  303 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEE-------------EECCC---C-CeEeecc---------CCCCcCCEEECCCC
Confidence            224799999999988653222121111             11100   0 1111000         01123457899999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCC-ceEeeEEeeCceecCCCc-e--------EEecCCCCCCCCCcceeecccccCCcce
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSG-V--------TVIDDPELDKQPDPVIIKGRRFTGSSQM  261 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~-~~~v~~i~~Gg~~~~~~~-v--------~~~~~~~~~~~~~~~~~~~~~~~~~P~~  261 (290)
                      ++|+.+...++...+|++...+. .+++........+++++. +        .++|..+..  .  ..+...   ..-..
T Consensus       304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~--~--~~lt~~---~~~~~  376 (429)
T PRK01742        304 QSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLTSGS--T--EVLSST---FLDES  376 (429)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECCCCC--e--EEecCC---CCCCC
Confidence            98775443456677787743221 222211000112333333 2        223322110  0  011111   12367


Q ss_pred             EEEccCCCEEEEEcC
Q psy11412        262 FQLSLDGKRIYVSSS  276 (290)
Q Consensus       262 ~a~sPDG~~L~Van~  276 (290)
                      ..|+|||++|+.++.
T Consensus       377 ~~~sPdG~~i~~~s~  391 (429)
T PRK01742        377 PSISPNGIMIIYSST  391 (429)
T ss_pred             ceECCCCCEEEEEEc
Confidence            899999999998865

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=3.6e-06  Score=81.60  Aligned_cols=31  Identities=10%  Similarity=0.079  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNW--MHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d   64 (290)
                      ...+.++||||++|+...+  +...|.+||+..
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~  235 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLET  235 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence            5678899999998766543  346899999864

>KOG0272|consensus

Probab=98.60  E-value=2.4e-07  Score=87.07  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -+..++|.|+|++|.++++ +-+=++||+.....+-..    -|+                              -.+..
T Consensus       263 RVs~VafHPsG~~L~Tasf-D~tWRlWD~~tk~ElL~Q----EGH------------------------------s~~v~  307 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASF-DSTWRLWDLETKSELLLQ----EGH------------------------------SKGVF  307 (459)
T ss_pred             hheeeeecCCCceeeeccc-ccchhhcccccchhhHhh----ccc------------------------------ccccc
Confidence            3457999999999999987 679999999763221111    121                              15788


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|||..+. ++.+.+.            + .  +||....  +..+.      ..+    .-....+|.|||+|-.
T Consensus       308 ~iaf~~DGSL~~-tGGlD~~------------~-R--vWDlRtg--r~im~------L~g----H~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  308 SIAFQPDGSLAA-TGGLDSL------------G-R--VWDLRTG--RCIMF------LAG----HIKEILSVAFSPNGYH  359 (459)
T ss_pred             eeEecCCCceee-ccCccch------------h-h--eeecccC--cEEEE------ecc----cccceeeEeECCCceE
Confidence            899999998655 4443210            0 0  1222210  11111      011    1135788999999988


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      |.++. ++|++.|||+.
T Consensus       360 lATgs-~Dnt~kVWDLR  375 (459)
T KOG0272|consen  360 LATGS-SDNTCKVWDLR  375 (459)
T ss_pred             EeecC-CCCcEEEeeec
Confidence            87776 89999999995

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=2.4e-06  Score=82.84  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             EEEEccCCCEEEEEeCCCC--cEEEEEec
Q psy11412        184 DILISLDDRYLYTSNWMHG--DIRQYDIR  210 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r~~~--~V~v~Dv~  210 (290)
                      .+++||||+++|.+...++  .|.+||+.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            5789999999988764332  58888874

>KOG2055|consensus

Probab=98.59  E-value=6.9e-07  Score=84.86  Aligned_cols=169  Identities=13%  Similarity=0.177  Sum_probs=103.0

Q ss_pred             CCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCC
Q psy11412         18 PAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ   97 (290)
Q Consensus        18 ~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~   97 (290)
                      .+++.....   ++.+.+.+++||.||+.|++++. .|.|.+||+..   +.++..+.-.|                   
T Consensus       333 kT~eli~s~---KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~---~~~~~rf~D~G-------------------  386 (514)
T KOG2055|consen  333 KTKELITSF---KIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQ---NSCLHRFVDDG-------------------  386 (514)
T ss_pred             hhhhhhhee---eeccEEeeEEEecCCcEEEEEcC-CceEEEEecCC---cceEEEEeecC-------------------
Confidence            345555544   89999999999999999998875 78999999965   34443322221                   


Q ss_pred             CCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC
Q psy11412         98 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP  177 (290)
Q Consensus        98 ~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~  177 (290)
                                 +-+-.+++.|++|++|++.+.- +.+-.+.+.....        .    ..++++.++..       + 
T Consensus       387 -----------~v~gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~--------s----~~PkPik~~dN-------L-  434 (514)
T KOG2055|consen  387 -----------SVHGTSLCISLNGSYLATGSDS-GIVNIYDGNSCFA--------S----TNPKPIKTVDN-------L-  434 (514)
T ss_pred             -----------ccceeeeeecCCCceEEeccCc-ceEEEeccchhhc--------c----CCCCchhhhhh-------h-
Confidence                       1234569999999988875541 1111111000000        0    01222222111       0 


Q ss_pred             CCCceeEEEEccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        178 ARSMVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       178 ~~~~~~~i~~SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                       ......|.|++|+..|..+.+. .+.+.+..+..   ..+...+|+-+.                           + =
T Consensus       435 -tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS---~TVFsNfP~~n~---------------------------~-v  482 (514)
T KOG2055|consen  435 -TTAITSLQFNHDAQILAIASRVKKNALRLVHVPS---CTVFSNFPTSNT---------------------------K-V  482 (514)
T ss_pred             -heeeeeeeeCcchhhhhhhhhccccceEEEeccc---eeeeccCCCCCC---------------------------c-c
Confidence             1346779999999999865544 57788776632   222333333220                           0 0


Q ss_pred             CCcceEEEccCCCEEEEEcC
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~  276 (290)
                      ++++.|+|||.|.+|+|+|.
T Consensus       483 g~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  483 GHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             cceEEEEecCCCceEEeecC
Confidence            37999999999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=4.2e-06  Score=81.16  Aligned_cols=31  Identities=10%  Similarity=-0.020  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNW--MHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d   64 (290)
                      .....++||||++|+....  +...|.+|++..
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~  232 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN  232 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence            4568899999998875533  245788888854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=2.1e-06  Score=83.80  Aligned_cols=50  Identities=22%  Similarity=0.097  Sum_probs=28.7

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe--EEEEEcCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD--IRQYDIRD   64 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~--V~v~dv~d   64 (290)
                      -.++|+..++.....   ..++.....++||||++|+.+...+|.  |.++|+..
T Consensus       244 L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t  295 (448)
T PRK04792        244 IFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT  295 (448)
T ss_pred             EEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence            345566544432211   233334467899999999876434454  66677653

>KOG0263|consensus

Probab=98.56  E-value=6.7e-07  Score=89.33  Aligned_cols=151  Identities=19%  Similarity=0.272  Sum_probs=94.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -++++.|+||.++|..+. .+.+|++|.+..-.   .+ .++-||.                              ..+.
T Consensus       453 PVyg~sFsPd~rfLlScS-ED~svRLWsl~t~s---~~-V~y~GH~------------------------------~PVw  497 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCS-EDSSVRLWSLDTWS---CL-VIYKGHL------------------------------APVW  497 (707)
T ss_pred             ceeeeeecccccceeecc-CCcceeeeecccce---eE-EEecCCC------------------------------ccee
Confidence            577999999999997655 58999999996532   11 1122321                              2346


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+.|+|-|-+++.++-               |. +-..|....   -.+++     .+.+    .-+...-+.|+|+..+
T Consensus       498 dV~F~P~GyYFatas~---------------D~-tArLWs~d~---~~PlR-----ifag----hlsDV~cv~FHPNs~Y  549 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASH---------------DQ-TARLWSTDH---NKPLR-----IFAG----HLSDVDCVSFHPNSNY  549 (707)
T ss_pred             eEEecCCceEEEecCC---------------Cc-eeeeeeccc---CCchh-----hhcc----cccccceEEECCcccc
Confidence            6889999976665432               11 112232221   11111     1111    1123444899999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      ++... .+.+|++||+.. +...   ++-+|..                              +....++|||+|++|+.
T Consensus       550 ~aTGS-sD~tVRlWDv~~-G~~V---RiF~GH~------------------------------~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  550 VATGS-SDRTVRLWDVST-GNSV---RIFTGHK------------------------------GPVTALAFSPCGRYLAS  594 (707)
T ss_pred             cccCC-CCceEEEEEcCC-CcEE---EEecCCC------------------------------CceEEEEEcCCCceEee
Confidence            88775 688999999964 2222   2234542                              13588999999999999


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      +..  .+.-||
T Consensus       595 g~ed~~I~iWD  605 (707)
T KOG0263|consen  595 GDEDGLIKIWD  605 (707)
T ss_pred             cccCCcEEEEE
Confidence            876  666676

>KOG0272|consensus

Probab=98.56  E-value=1.3e-06  Score=82.13  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ...+.||.|++.|+++++ +|.+.||...+.   ..+..+ -|+                              .+..-.
T Consensus       178 is~~~fS~ds~~laT~sw-sG~~kvW~~~~~---~~~~~l-~gH------------------------------~~~v~~  222 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGSW-SGLVKVWSVPQC---NLLQTL-RGH------------------------------TSRVGA  222 (459)
T ss_pred             ceeeEeecCCCeEEEeec-CCceeEeecCCc---ceeEEE-ecc------------------------------ccceee
Confidence            456889999999999988 789999998663   222211 121                              034556


Q ss_pred             EEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        115 FQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       115 vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.|||.  +..++.++.               || .+..|+...   ...+.     .+++    ....+..++|+|+|+
T Consensus       223 ~~fhP~~~~~~lat~s~---------------Dg-tvklw~~~~---e~~l~-----~l~g----H~~RVs~VafHPsG~  274 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASA---------------DG-TVKLWKLSQ---ETPLQ-----DLEG----HLARVSRVAFHPSGK  274 (459)
T ss_pred             EEEccCCCccceeeecc---------------CC-ceeeeccCC---Ccchh-----hhhc----chhhheeeeecCCCc
Confidence            899998  556665443               23 333333321   12222     1122    124567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCC-------CceEeeEEeeCceecCCCc----------eEEecCCCCCCCCCcceeecccc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTA-------HPVLVGQIFLGGKIQSDSG----------VTVIDDPELDKQPDPVIIKGRRF  255 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~-------~~~~v~~i~~Gg~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~  255 (290)
                      ||.+++ .+.+=++||+....       +-+-+-.+    .+..||.          =+|||...-.   -.-.+.| + 
T Consensus       275 ~L~Tas-fD~tWRlWD~~tk~ElL~QEGHs~~v~~i----af~~DGSL~~tGGlD~~~RvWDlRtgr---~im~L~g-H-  344 (459)
T KOG0272|consen  275 FLGTAS-FDSTWRLWDLETKSELLLQEGHSKGVFSI----AFQPDGSLAATGGLDSLGRVWDLRTGR---CIMFLAG-H-  344 (459)
T ss_pred             eeeecc-cccchhhcccccchhhHhhccccccccee----EecCCCceeeccCccchhheeecccCc---EEEEecc-c-
Confidence            999999 68889999996421       11111111    1122333          3445543211   0001111 1 


Q ss_pred             cCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        256 TGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       256 ~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      -+....|+|||+|-.|+.+++  +.+.||
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEee
Confidence            023689999999999999877  778887

>KOG0291|consensus

Probab=98.56  E-value=4e-06  Score=83.88  Aligned_cols=190  Identities=18%  Similarity=0.238  Sum_probs=105.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -+.+++|+|+|..||++.| +.+|++||+-+...  ...++..                                .+..-
T Consensus       480 PVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~~--~vEtl~i--------------------------------~sdvl  524 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSSG--TVETLEI--------------------------------RSDVL  524 (893)
T ss_pred             cceeeEEccccCeEEeccc-cceEEEEEeeccCc--eeeeEee--------------------------------cccee
Confidence            3567999999999999988 78999999965211  1111111                                13556


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-----CCCceeEEEEc
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-----ARSMVTDILIS  188 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-----~~~~~~~i~~S  188 (290)
                      .++|+|||+.|.|+.- .+++..+..    +.+..+..++.     ++.+.   .+....-.+.     .+..-..|.+|
T Consensus       525 ~vsfrPdG~elaVaTl-dgqItf~d~----~~~~q~~~Idg-----rkD~~---~gR~~~D~~ta~~sa~~K~Ftti~yS  591 (893)
T KOG0291|consen  525 AVSFRPDGKELAVATL-DGQITFFDI----KEAVQVGSIDG-----RKDLS---GGRKETDRITAENSAKGKTFTTICYS  591 (893)
T ss_pred             EEEEcCCCCeEEEEEe-cceEEEEEh----hhceeeccccc-----hhhcc---ccccccceeehhhcccCCceEEEEEc
Confidence            7999999999999754 222222111    11111111111     00000   0000000000     11245679999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC--ce------------ecCCCceEEecCCCCCC-----CCCcce
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG--GK------------IQSDSGVTVIDDPELDK-----QPDPVI  249 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G--g~------------~~~~~~v~~~~~~~~~~-----~~~~~~  249 (290)
                      +||..+.++. ..+.|-+||+.+   ..++....+-  .+            ...-|++-++|....+.     .+.|-.
T Consensus       592 aDG~~IlAgG-~sn~iCiY~v~~---~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~  667 (893)
T KOG0291|consen  592 ADGKCILAGG-ESNSICIYDVPE---GVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGV  667 (893)
T ss_pred             CCCCEEEecC-CcccEEEEECch---hheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCcc
Confidence            9999998887 688999999964   2333333221  11            15566777777532221     222212


Q ss_pred             eecccccC-------CcceEEEccCCCEEEEEcC
Q psy11412        250 IKGRRFTG-------SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       250 ~~~~~~~~-------~P~~~a~sPDG~~L~Van~  276 (290)
                      .+|- .+.       ....+.|||.|+..|+|..
T Consensus       668 ~~gd-lssRr~rpeIrv~sv~fsPtgraFAaatT  700 (893)
T KOG0291|consen  668 QRGD-LSSRRFRPEIRVTSVQFSPTGRAFAAATT  700 (893)
T ss_pred             ccCC-ccccccCceEEEEEEEECCCcCeeeeecc
Confidence            1221 111       1468999999999998865

>KOG0282|consensus

Probab=98.56  E-value=1.1e-06  Score=83.95  Aligned_cols=179  Identities=12%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+.||.+|+.+.++.+ +..|.+||++.   ++++....++                                .-|.
T Consensus       260 ~Vrd~~~s~~g~~fLS~sf-D~~lKlwDtET---G~~~~~f~~~--------------------------------~~~~  303 (503)
T KOG0282|consen  260 PVRDASFNNCGTSFLSASF-DRFLKLWDTET---GQVLSRFHLD--------------------------------KVPT  303 (503)
T ss_pred             hhhhhhccccCCeeeeeec-ceeeeeecccc---ceEEEEEecC--------------------------------CCce
Confidence            3557899999999998886 88999999865   4555544443                                4677


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      -+.|+||+..++++...              + +.+..||...   ...++..-.         .-.....|.|=++|++
T Consensus       304 cvkf~pd~~n~fl~G~s--------------d-~ki~~wDiRs---~kvvqeYd~---------hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGS--------------D-KKIRQWDIRS---GKVVQEYDR---------HLGAILDITFVDEGRR  356 (503)
T ss_pred             eeecCCCCCcEEEEecC--------------C-CcEEEEeccc---hHHHHHHHh---------hhhheeeeEEccCCce
Confidence            89999999777777652              1 2333344322   222221110         0023567899999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEe-----------eEEeeCcee---cCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLV-----------GQIFLGGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v-----------~~i~~Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ...|. .+.++.+|+..-+...+.+           +.-|-++-+   +-|+.+.+......-.....+.++|....|.+
T Consensus       357 FissS-Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  357 FISSS-DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             Eeeec-cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            77666 7889999998543221211           111222222   22333444443332234445578888888999


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      -.+.|||||++|...+.
T Consensus       436 ~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             eeEEEcCCCCeEEeecC
Confidence            99999999999999887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=4e-06  Score=80.92  Aligned_cols=49  Identities=14%  Similarity=0.050  Sum_probs=28.8

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRD   64 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d   64 (290)
                      .+.++..++.+...   ...+.....++||||++|+.+...+|  .|.+||+..
T Consensus       226 ~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~  276 (430)
T PRK00178        226 FVQNLDTGRREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS  276 (430)
T ss_pred             EEEECCCCCEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            34555544433222   23334456889999999976543333  577788754

>KOG0263|consensus

Probab=98.54  E-value=5.2e-07  Score=90.11  Aligned_cols=151  Identities=21%  Similarity=0.305  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ++.+.|+|-|-|.+++ .++.+-++|..+. ..|.++   ..|+.                              +-...
T Consensus       496 VwdV~F~P~GyYFata-s~D~tArLWs~d~-~~PlRi---faghl------------------------------sDV~c  540 (707)
T KOG0263|consen  496 VWDVQFAPRGYYFATA-SHDQTARLWSTDH-NKPLRI---FAGHL------------------------------SDVDC  540 (707)
T ss_pred             eeeEEecCCceEEEec-CCCceeeeeeccc-CCchhh---hcccc------------------------------cccce
Confidence            4578999999998877 4689999999854 233332   22321                              45677


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      +.|||+..+++  ++-              .+.++-.||+..   ...++.     +.|    .......++|||+||+|
T Consensus       541 v~FHPNs~Y~a--TGS--------------sD~tVRlWDv~~---G~~VRi-----F~G----H~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  541 VSFHPNSNYVA--TGS--------------SDRTVRLWDVST---GNSVRI-----FTG----HKGPVTALAFSPCGRYL  592 (707)
T ss_pred             EEECCcccccc--cCC--------------CCceEEEEEcCC---CcEEEE-----ecC----CCCceEEEEEcCCCceE
Confidence            99999998554  430              122333344432   111221     112    12456789999999999


Q ss_pred             EEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEE
Q psy11412        195 YTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Va  274 (290)
                      ..+. .++.|.+||+..   .+++.+. .|.                              .+....+.||.||..|+++
T Consensus       593 aSg~-ed~~I~iWDl~~---~~~v~~l-~~H------------------------------t~ti~SlsFS~dg~vLasg  637 (707)
T KOG0263|consen  593 ASGD-EDGLIKIWDLAN---GSLVKQL-KGH------------------------------TGTIYSLSFSRDGNVLASG  637 (707)
T ss_pred             eecc-cCCcEEEEEcCC---Ccchhhh-hcc------------------------------cCceeEEEEecCCCEEEec
Confidence            8877 789999999964   2332211 011                              1246779999999999998


Q ss_pred             cC--CCCCCCc
Q psy11412        275 SS--LFSPWDK  283 (290)
Q Consensus       275 n~--~~~~~~~  283 (290)
                      .+  ..-.||.
T Consensus       638 g~DnsV~lWD~  648 (707)
T KOG0263|consen  638 GADNSVRLWDL  648 (707)
T ss_pred             CCCCeEEEEEc
Confidence            76  4555653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=1.7e-06  Score=83.72  Aligned_cols=31  Identities=16%  Similarity=0.047  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEc
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDI   62 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv   62 (290)
                      .++...+++||||++|+.+...+|.+.+|.+
T Consensus       247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             CCccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            3444568999999999887545676666644

>KOG0318|consensus

Probab=98.54  E-value=1.4e-05  Score=77.27  Aligned_cols=196  Identities=15%  Similarity=0.226  Sum_probs=110.8

Q ss_pred             eeEEEEEecCCCccCCCCCCC-----C-CCC---ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCcee--------e
Q psy11412          9 YKADKVIDIPAKQVQGYPGGD-----K-VPA---MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL--------V   71 (290)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-----~-v~~---~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~--------~   71 (290)
                      ||.+..|-+.-+....+.-..     . +.+   ....++++|||++||++++ +|.|.-|++.....-++        +
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY-DGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc-CceEEEEecCCccccccccccccceE
Confidence            666666666544333322000     0 222   5678999999999998887 89999999875332222        1


Q ss_pred             eEEeecc--c---ccCCCceEEecCC--CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccC
Q psy11412         72 GQIFLGG--K---IQSDSGVTVIDDP--ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVK  144 (290)
Q Consensus        72 ~~i~~g~--~---~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~  144 (290)
                      ..+.+..  .   .+-+.++.+++..  ..+...      -...|..|..++..+||.++.+++.               
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~------~~~lg~QP~~lav~~d~~~avv~~~---------------  425 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSE------VVKLGSQPKGLAVLSDGGTAVVACI---------------  425 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccc------eeecCCCceeEEEcCCCCEEEEEec---------------
Confidence            1111110  0   0012223333211  111110      0123578999999999999999876               


Q ss_pred             CCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        145 TDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       145 ~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                       ...+. ++  +   .+.+..+          +.+-.+..++++|||.++.+.. .++.|.+|.+...+.......+   
T Consensus       426 -~~iv~-l~--~---~~~~~~~----------~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~---  484 (603)
T KOG0318|consen  426 -SDIVL-LQ--D---QTKVSSI----------PIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL---  484 (603)
T ss_pred             -CcEEE-Ee--c---CCcceee----------ccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeee---
Confidence             11111 11  0   0111111          1122456799999999999998 5778999998642211111111   


Q ss_pred             ceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        225 GKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       225 g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                          +|+         +-+..+++||||++|+++..
T Consensus       485 --------------------~h~---------a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  485 --------------------EHR---------AAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             --------------------ccc---------CCceEEEECCCCcEEEEecc
Confidence                                111         24788999999999999865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=6.6e-06  Score=80.31  Aligned_cols=31  Identities=23%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHG--DIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d   64 (290)
                      ......+||||++|+.+...++  .|.++|+..
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t  251 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT  251 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCC
Confidence            3456799999998876544333  577888754

>KOG0645|consensus

Probab=98.51  E-value=1.9e-05  Score=70.89  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=102.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+|+||.|++|+++.+ +.++.+|.-.+ +.-+.+..+..+                               -..+-
T Consensus        63 sVRsvAwsp~g~~La~aSF-D~t~~Iw~k~~-~efecv~~lEGH-------------------------------EnEVK  109 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASF-DATVVIWKKED-GEFECVATLEGH-------------------------------ENEVK  109 (312)
T ss_pred             eeeeeeecCCCcEEEEeec-cceEEEeecCC-CceeEEeeeecc-------------------------------cccee
Confidence            5778999999999998886 78999998654 344555433221                               14567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++||++|++|+..+...+.|-....     .++.+   +...     .+.            +....+-.+.++|-.-.
T Consensus       110 ~Vaws~sG~~LATCSRDKSVWiWe~d-----eddEf---ec~a-----VL~------------~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen  110 CVAWSASGNYLATCSRDKSVWIWEID-----EDDEF---ECIA-----VLQ------------EHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEEec-----CCCcE---EEEe-----eec------------cccccccEEEEcCCcce
Confidence            79999999999998874444422111     11111   1111     010            01123456899998888


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+... .+|+|.+|+-.+...-..++++  ++.                             .+....++|+|.|.+|..
T Consensus       165 L~S~S-YDnTIk~~~~~~dddW~c~~tl--~g~-----------------------------~~TVW~~~F~~~G~rl~s  212 (312)
T KOG0645|consen  165 LFSCS-YDNTIKVYRDEDDDDWECVQTL--DGH-----------------------------ENTVWSLAFDNIGSRLVS  212 (312)
T ss_pred             eEEec-cCCeEEEEeecCCCCeeEEEEe--cCc-----------------------------cceEEEEEecCCCceEEE
Confidence            87776 8999999987544444555544  221                             014688999999999988


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      +..  +.+-|.
T Consensus       213 ~sdD~tv~Iw~  223 (312)
T KOG0645|consen  213 CSDDGTVSIWR  223 (312)
T ss_pred             ecCCcceEeee
Confidence            866  555554

>KOG0279|consensus

Probab=98.51  E-value=3.3e-06  Score=75.99  Aligned_cols=116  Identities=18%  Similarity=0.336  Sum_probs=73.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+++|+||.+.+++++ ++++++||+... ....   ...|+                              +..+-
T Consensus        65 ~v~dv~~s~dg~~alS~sw-D~~lrlWDl~~g-~~t~---~f~GH------------------------------~~dVl  109 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASW-DGTLRLWDLATG-ESTR---RFVGH------------------------------TKDVL  109 (315)
T ss_pred             EecceEEccCCceEEeccc-cceEEEEEecCC-cEEE---EEEec------------------------------CCceE
Confidence            3447899999999999888 899999999753 2221   23342                              15678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC-
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR-  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr-  192 (290)
                      .++||||.+.+...+.                +.++..+++...   . ..++..    +   .+..++..+.|||... 
T Consensus       110 sva~s~dn~qivSGSr----------------DkTiklwnt~g~---c-k~t~~~----~---~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen  110 SVAFSTDNRQIVSGSR----------------DKTIKLWNTLGV---C-KYTIHE----D---SHREWVSCVRFSPNESN  162 (315)
T ss_pred             EEEecCCCceeecCCC----------------cceeeeeeeccc---E-EEEEec----C---CCcCcEEEEEEcCCCCC
Confidence            8999999998876443                223444444320   0 000000    0   0134688899999963 


Q ss_pred             EEEEEeCCCCcEEEEEecC
Q psy11412        193 YLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ...++.--+.+|.+||+..
T Consensus       163 p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             cEEEEccCCceEEEEccCC
Confidence            3334443588999999853

>KOG1446|consensus

Probab=98.50  E-value=5.6e-06  Score=75.42  Aligned_cols=123  Identities=15%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC-CCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~-~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .+.+.| -+|++|.|=.+++++. .+.|.+||++.- ..|-.+-.  ++             +               ..
T Consensus       139 ~~~~~p-i~AfDp~GLifA~~~~-~~~IkLyD~Rs~dkgPF~tf~--i~-------------~---------------~~  186 (311)
T KOG1446|consen  139 NLSGRP-IAAFDPEGLIFALANG-SELIKLYDLRSFDKGPFTTFS--IT-------------D---------------ND  186 (311)
T ss_pred             ecCCCc-ceeECCCCcEEEEecC-CCeEEEEEecccCCCCceeEc--cC-------------C---------------CC
Confidence            444433 4589999999988875 459999999752 22222211  11             0               00


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEE
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILI  187 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~  187 (290)
                      -..-.+|.||||||.+-++.+.                +...++|..+-.   .+.+     +.+  .+. ...+.+..|
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~~----------------s~~~~lDAf~G~---~~~t-----fs~--~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTNA----------------SFIYLLDAFDGT---VKST-----FSG--YPNAGNLPLSATF  240 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeCC----------------CcEEEEEccCCc---Eeee-----Eee--ccCCCCcceeEEE
Confidence            1344679999999999987651                122223332210   0110     101  011 124567889


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|||+|+..+. ++++|.+|++.+
T Consensus       241 tPds~Fvl~gs-~dg~i~vw~~~t  263 (311)
T KOG1446|consen  241 TPDSKFVLSGS-DDGTIHVWNLET  263 (311)
T ss_pred             CCCCcEEEEec-CCCcEEEEEcCC
Confidence            99999988777 899999999943

>KOG0639|consensus

Probab=98.49  E-value=2.8e-07  Score=88.37  Aligned_cols=116  Identities=16%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +.+...+-+.||||+|.|.++ .-+|.+||+..+. +++-.++..                                 ++
T Consensus       465 dnyiRSckL~pdgrtLivGGe-astlsiWDLAapT-prikaelts---------------------------------sa  509 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAPT-PRIKAELTS---------------------------------SA  509 (705)
T ss_pred             ccceeeeEecCCCceEEeccc-cceeeeeeccCCC-cchhhhcCC---------------------------------cc
Confidence            447788999999999999987 6699999997542 333221111                                 22


Q ss_pred             c--eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        112 S--QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       112 P--r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      |  ..++.|||.+.+|....               +| .+.+||+-+   ...++.++     |    ...++.-|.+|+
T Consensus       510 paCyALa~spDakvcFsccs---------------dG-nI~vwDLhn---q~~Vrqfq-----G----htDGascIdis~  561 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCS---------------DG-NIAVWDLHN---QTLVRQFQ-----G----HTDGASCIDISK  561 (705)
T ss_pred             hhhhhhhcCCccceeeeecc---------------CC-cEEEEEccc---ceeeeccc-----C----CCCCceeEEecC
Confidence            3  34889999999997654               34 455566533   22233211     2    124567799999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ||..||+.. .+|+|+.||+..
T Consensus       562 dGtklWTGG-lDntvRcWDlre  582 (705)
T KOG0639|consen  562 DGTKLWTGG-LDNTVRCWDLRE  582 (705)
T ss_pred             CCceeecCC-Cccceeehhhhh
Confidence            999999998 899999999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.49  E-value=6e-06  Score=71.69  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCEEEEEe-CCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~-~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .++.++++|+|+.+++.. .....|.+||+.    .+.+..+  +                               ....
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~--~-------------------------------~~~~  103 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSF--G-------------------------------TQPR  103 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEee--c-------------------------------CCCc
Confidence            488999999999987774 335689999984    2333222  1                               0244


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..|.|||+|++|.+++-..             ..+.+..+|+..   ...+...           +......+++|||||
T Consensus       104 n~i~wsP~G~~l~~~g~~n-------------~~G~l~~wd~~~---~~~i~~~-----------~~~~~t~~~WsPdGr  156 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGN-------------LNGDLEFWDVRK---KKKISTF-----------EHSDATDVEWSPDGR  156 (194)
T ss_pred             eEEEECCCCCEEEEEEccC-------------CCcEEEEEECCC---CEEeecc-----------ccCcEEEEEEcCCCC
Confidence            6799999999999875310             012233344322   1222210           123467899999999


Q ss_pred             EEEEEeC-----CCCcEEEEEec
Q psy11412        193 YLYTSNW-----MHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r-----~~~~V~v~Dv~  210 (290)
                      +|.++.-     .++.+.+|+..
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEEeccceeccccEEEEEec
Confidence            9998763     37889999984

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.47  E-value=8.2e-06  Score=77.89  Aligned_cols=50  Identities=26%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRD   64 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d   64 (290)
                      -.++++..++.....   ...+....++++|||+.|+.+...++  .|.+|++..
T Consensus       216 i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       216 IYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             EEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            456666655433222   23444566899999998876644333  577888754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1274|consensus

Probab=98.46  E-value=1.3e-05  Score=81.59  Aligned_cols=211  Identities=22%  Similarity=0.293  Sum_probs=117.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC-CCceeeeEEeeccc---cc----------CCCceEEecCCCCcCCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-AHPVLVGQIFLGGK---IQ----------SDSGVTVIDDPELDKQPD   99 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~-~~~~~~~~i~~g~~---~~----------~~~~~~v~~~~~~~~~~~   99 (290)
                      .-+.|+++|||.+|++++. +|.|++|+..+. ..|+.+..  .|-.   +.          ....|-++.-++.+.  +
T Consensus        15 G~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~--~   89 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE--D   89 (933)
T ss_pred             ceEEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCCc--c
Confidence            3578999999999998875 899999998654 45554321  1100   00          011111111111100  0


Q ss_pred             cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412        100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR  179 (290)
Q Consensus       100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  179 (290)
                       ..+  .+..-..|+++|+-+|++++..++                +..+..++..|..+...++        +    ..
T Consensus        90 -~iL--~Rftlp~r~~~v~g~g~~iaagsd----------------D~~vK~~~~~D~s~~~~lr--------g----h~  138 (933)
T KOG1274|consen   90 -TIL--ARFTLPIRDLAVSGSGKMIAAGSD----------------DTAVKLLNLDDSSQEKVLR--------G----HD  138 (933)
T ss_pred             -cee--eeeeccceEEEEecCCcEEEeecC----------------ceeEEEEeccccchheeec--------c----cC
Confidence             000  112235689999999999887654                2234444555422211111        1    12


Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCce----------Ee-eEE-------eeCcee---cCCCceEEecC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV----------LV-GQI-------FLGGKI---QSDSGVTVIDD  238 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~----------~v-~~i-------~~Gg~~---~~~~~v~~~~~  238 (290)
                      ..+.++.|+|.|.+|+++. .+|.|.+||+.+..-..          .+ .++       |-||.+   +-++.|.+++.
T Consensus       139 apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r  217 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR  217 (933)
T ss_pred             CceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence            3567899999999999998 89999999997521000          00 111       112222   55666777764


Q ss_pred             CCCCCCCCcceeecccccCCcceEEEccCCCEEEEE--cCCCCCCCcc
Q psy11412        239 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVS--SSLFSPWDKE  284 (290)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Va--n~~~~~~~~~  284 (290)
                      ++-..  . -.+++-.....-..++|||.|++|++.  |..+..|+-+
T Consensus       218 ~~we~--~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  218 KGWEL--Q-FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             CCcee--h-eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            43110  0 001111111125679999999999998  3467777766

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=1.3e-05  Score=77.72  Aligned_cols=31  Identities=16%  Similarity=0.084  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d   64 (290)
                      .....++||||++|+...+..  ..|.+||+..
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~  237 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT  237 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCC
Confidence            345788999999888765433  4689999854

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=1.7e-05  Score=76.99  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             eEEEEccCCCEEEEEeCC--CCcEEEEEec
Q psy11412        183 TDILISLDDRYLYTSNWM--HGDIRQYDIR  210 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~--~~~V~v~Dv~  210 (290)
                      ....+||||++|+.....  ...|.+||+.
T Consensus       330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             cceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            457899999988765433  3468899885

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.42  E-value=1.8e-05  Score=75.51  Aligned_cols=31  Identities=16%  Similarity=0.073  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d   64 (290)
                      .....++||||++|+.+...+  ..|.+||+..
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~  223 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT  223 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            456778999999998876543  4799999865

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0271|consensus

Probab=98.40  E-value=4.3e-06  Score=78.10  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+-.+.|||||++|+ ++.++.++++||+... .|..+  .+.+                               -..+-
T Consensus       117 ~Vl~~~fsp~g~~l~-tGsGD~TvR~WD~~Te-Tp~~t--~KgH-------------------------------~~WVl  161 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLV-TGSGDTTVRLWDLDTE-TPLFT--CKGH-------------------------------KNWVL  161 (480)
T ss_pred             cEEEEEecCCCceEE-ecCCCceEEeeccCCC-Cccee--ecCC-------------------------------ccEEE
Confidence            466899999999996 5557899999999753 22211  1111                               04577


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeE-----EEE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTD-----ILI  187 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~-----i~~  187 (290)
                      .+++||||++++..+. .+               .+..++...   .+.+..         .+++. .+..+     +++
T Consensus       162 cvawsPDgk~iASG~~-dg---------------~I~lwdpkt---g~~~g~---------~l~gH~K~It~Lawep~hl  213 (480)
T KOG0271|consen  162 CVAWSPDGKKIASGSK-DG---------------SIRLWDPKT---GQQIGR---------ALRGHKKWITALAWEPLHL  213 (480)
T ss_pred             EEEECCCcchhhcccc-CC---------------eEEEecCCC---CCcccc---------cccCcccceeEEeeccccc
Confidence            7999999999986443 22               222222111   111110         01111 01111     567


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecCC-------CCceEeeEEeeCce--e---cCCCceEEecCCC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRDT-------AHPVLVGQIFLGGK--I---QSDSGVTVIDDPE  240 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d~-------~~~~~v~~i~~Gg~--~---~~~~~v~~~~~~~  240 (290)
                      .|..|+|..+. .+|+|.+||+.-.       ++-..+.-+.-||.  +   +-|.+|.||+..+
T Consensus       214 ~p~~r~las~s-kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  214 VPPCRRLASSS-KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             CCCccceeccc-CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence            88999877666 8999999999531       11112222333432  1   6788899998665

>PTZ00420 coronin; Provisional

Probab=98.38  E-value=2.8e-05  Score=77.95  Aligned_cols=123  Identities=11%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|++..++++...+++|++||+....   .+..+..                                ...+.
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~---~~~~i~~--------------------------------~~~V~  171 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK---RAFQINM--------------------------------PKKLS  171 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc---EEEEEec--------------------------------CCcEE
Confidence            577899999999876665568999999997532   2222211                                13577


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|+.|++++.                ++.+.+||...   ...+.++..  ..+ .. ......-..|++|+.+
T Consensus       172 SlswspdG~lLat~s~----------------D~~IrIwD~Rs---g~~i~tl~g--H~g-~~-~s~~v~~~~fs~d~~~  228 (568)
T PTZ00420        172 SLKWNIKGNLLSGTCV----------------GKHMHIIDPRK---QEIASSFHI--HDG-GK-NTKNIWIDGLGGDDNY  228 (568)
T ss_pred             EEEECCCCCEEEEEec----------------CCEEEEEECCC---CcEEEEEec--ccC-Cc-eeEEEEeeeEcCCCCE
Confidence            8999999999987653                12333343322   122221110  000 00 0001111346799999


Q ss_pred             EEEEeCCC---CcEEEEEecCCCC
Q psy11412        194 LYTSNWMH---GDIRQYDIRDTAH  214 (290)
Q Consensus       194 Lyvs~r~~---~~V~v~Dv~d~~~  214 (290)
                      |.++....   .+|.+||+.+...
T Consensus       229 IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        229 ILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             EEEEEcCCCCccEEEEEECCCCCC
Confidence            98877443   3799999975443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=98.38  E-value=1.4e-06  Score=56.19  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |||++||++|+++++|+++|..   ..+.+.++++|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~---~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTA---TNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECC---CCeEEEEEECCC
Confidence            7999999999999999999874   467888888866

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=3.9e-05  Score=73.98  Aligned_cols=31  Identities=10%  Similarity=0.010  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d   64 (290)
                      ......+||||++|+.....+  ..|.+|++..
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~  232 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT  232 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC
Confidence            456789999999986554433  3688888864

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=2.2e-05  Score=71.57  Aligned_cols=127  Identities=24%  Similarity=0.420  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....+.++  +.++|++++. ..++++|++++..|++++.+.+.                                +--+
T Consensus        88 l~~Dv~vs--e~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~--------------------------------gyay  132 (370)
T COG5276          88 LFADVRVS--EEYVYVADWS-SGLRIVDISTPDSPTLIGFLNTD--------------------------------GYAY  132 (370)
T ss_pred             hhheeEec--ccEEEEEcCC-CceEEEeccCCCCcceeccccCC--------------------------------ceEE
Confidence            44456665  6799999984 56999999999999888765442                                1122


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .  ..-.|+++||+.-               +.+ +..+++.+...++...   +.     +++.+ ...++++|  |++
T Consensus       133 g--v~vsGn~aYVadl---------------ddg-fLivdvsdpssP~lag---ry-----a~~~~-d~~~v~IS--Gn~  183 (370)
T COG5276         133 G--VYVSGNYAYVADL---------------DDG-FLIVDVSDPSSPQLAG---RY-----ALPGG-DTHDVAIS--GNY  183 (370)
T ss_pred             E--EEecCCEEEEeec---------------cCc-EEEEECCCCCCceeee---ee-----ccCCC-CceeEEEe--cCe
Confidence            2  3456999999753               122 3446766643222111   11     12211 22456665  789


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      .|++.|. +.+.+.||++|..|+++++..+|+
T Consensus       184 AYvA~~d-~GL~ivDVSnp~sPvli~~~n~g~  214 (370)
T COG5276         184 AYVAWRD-GGLTIVDVSNPHSPVLIGSYNTGP  214 (370)
T ss_pred             EEEEEeC-CCeEEEEccCCCCCeEEEEEecCC
Confidence            9999974 558899999999999999998874

>KOG0310|consensus

Probab=98.34  E-value=3.9e-05  Score=73.44  Aligned_cols=172  Identities=16%  Similarity=0.129  Sum_probs=113.0

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      -.++-|+..+.|+..+  ..-..++...+++|-...+++++..+|+|++||+...+  ..+-++..|             
T Consensus       134 v~k~~d~s~a~v~~~l--~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg-------------  196 (487)
T KOG0310|consen  134 VVKYWDLSTAYVQAEL--SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHG-------------  196 (487)
T ss_pred             eEEEEEcCCcEEEEEe--cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCC-------------
Confidence            4455666666665433  12234889999999999888888889999999987532  233333222             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                         .....+.|-|.|..+..++                 |..+.+||+..  ..+.+..     
T Consensus       197 -------------------~pVe~vl~lpsgs~iasAg-----------------Gn~vkVWDl~~--G~qll~~-----  233 (487)
T KOG0310|consen  197 -------------------CPVESVLALPSGSLIASAG-----------------GNSVKVWDLTT--GGQLLTS-----  233 (487)
T ss_pred             -------------------CceeeEEEcCCCCEEEEcC-----------------CCeEEEEEecC--Cceehhh-----
Confidence                               3456788999998887653                 33455566543  1111110     


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                      ..    .....+..+++..|+++|+.+. .|+.|.|||+++   -+.+-.+..-+                         
T Consensus       234 ~~----~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~---~Kvv~s~~~~~-------------------------  280 (487)
T KOG0310|consen  234 MF----NHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTN---YKVVHSWKYPG-------------------------  280 (487)
T ss_pred             hh----cccceEEEEEeecCCceEeecc-cccceEEEEccc---eEEEEeeeccc-------------------------
Confidence            00    0123577899999999999888 899999999764   55555543323                         


Q ss_pred             ecccccCCcceEEEccCCCEEEEE--cCCCCCCC
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVS--SSLFSPWD  282 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Va--n~~~~~~~  282 (290)
                             ..=++++|||++.+++.  |.+.+..+
T Consensus       281 -------pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  281 -------PVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             -------ceeeEEecCCCceEEEecccceeeeeh
Confidence                   34669999999999987  44555553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.33  E-value=2.9e-05  Score=80.83  Aligned_cols=120  Identities=12%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-Cceee--eEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-HPVLV--GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~-~~~~~--~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ...++.++|+|||++|++++. +++|.+|++.... .....  ......                              .
T Consensus       483 ~~~V~~i~fs~dg~~latgg~-D~~I~iwd~~~~~~~~~~~~~~~~~~~------------------------------~  531 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGV-NKKIKIFECESIIKDGRDIHYPVVELA------------------------------S  531 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeC-CCEEEEEECCcccccccccccceEEec------------------------------c
Confidence            346789999999999988774 8999999975310 00000  000000                              0


Q ss_pred             CCCceEEEEccC-CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        109 TGSSQMFQLSLD-GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       109 g~gPr~vafsPd-G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      ......++|+|. +++|++++.               + +.+.+|++..   .+.+..     ..+    .......++|
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~---------------D-g~v~lWd~~~---~~~~~~-----~~~----H~~~V~~l~~  583 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNF---------------E-GVVQVWDVAR---SQLVTE-----MKE----HEKRVWSIDY  583 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeC---------------C-CeEEEEECCC---CeEEEE-----ecC----CCCCEEEEEE
Confidence            134567889875 667766543               2 2444444422   111211     011    1245778999


Q ss_pred             cc-CCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 SL-DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 Sp-DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +| ||.+|+++. .++.|.+||+..
T Consensus       584 ~p~~~~~L~Sgs-~Dg~v~iWd~~~  607 (793)
T PLN00181        584 SSADPTLLASGS-DDGSVKLWSINQ  607 (793)
T ss_pred             cCCCCCEEEEEc-CCCEEEEEECCC
Confidence            97 788888777 789999999953

>KOG0279|consensus

Probab=98.32  E-value=1e-05  Score=72.82  Aligned_cols=153  Identities=12%  Similarity=0.153  Sum_probs=95.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -+.+++||+|.+.+.+.. -+.+|.+|++-.  ..+..  +.-+                           +.  ..-+.
T Consensus       107 dVlsva~s~dn~qivSGS-rDkTiklwnt~g--~ck~t--~~~~---------------------------~~--~~WVs  152 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGS-RDKTIKLWNTLG--VCKYT--IHED---------------------------SH--REWVS  152 (315)
T ss_pred             ceEEEEecCCCceeecCC-Ccceeeeeeecc--cEEEE--EecC---------------------------CC--cCcEE
Confidence            577899999999996554 588999999742  12211  1111                           00  14688


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      ++.|||+..-.|+++.   .|           ++++.+|+....   +...+.+     +    .......+.+||||..
T Consensus       153 cvrfsP~~~~p~Ivs~---s~-----------DktvKvWnl~~~---~l~~~~~-----g----h~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSA---SW-----------DKTVKVWNLRNC---QLRTTFI-----G----HSGYVNTVTVSPDGSL  206 (315)
T ss_pred             EEEEcCCCCCcEEEEc---cC-----------CceEEEEccCCc---chhhccc-----c----ccccEEEEEECCCCCE
Confidence            9999999755555543   12           235555655432   1111101     1    2246778999999987


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      ..... .++.+.+||+....+   +...+...                                -.++++|+|.--+|.+
T Consensus       207 casGg-kdg~~~LwdL~~~k~---lysl~a~~--------------------------------~v~sl~fspnrywL~~  250 (315)
T KOG0279|consen  207 CASGG-KDGEAMLWDLNEGKN---LYSLEAFD--------------------------------IVNSLCFSPNRYWLCA  250 (315)
T ss_pred             EecCC-CCceEEEEEccCCce---eEeccCCC--------------------------------eEeeEEecCCceeEee
Confidence            65544 689999999975433   23221111                                4688999999999988


Q ss_pred             EcC-CCCCCC
Q psy11412        274 SSS-LFSPWD  282 (290)
Q Consensus       274 an~-~~~~~~  282 (290)
                      |-. .++-|+
T Consensus       251 at~~sIkIwd  260 (315)
T KOG0279|consen  251 ATATSIKIWD  260 (315)
T ss_pred             ccCCceEEEe
Confidence            865 556665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=3.3e-05  Score=74.82  Aligned_cols=51  Identities=16%  Similarity=0.055  Sum_probs=30.4

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCC
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW--MHGDIRQYDIRD   64 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d   64 (290)
                      .-.++|+..++.....   ..++......+||||++|+.+..  +...|.++++..
T Consensus       214 ~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        214 TLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             EEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            3455666655433322   23444556779999998876643  235677777754

>KOG2055|consensus

Probab=98.30  E-value=9.8e-05  Score=70.54  Aligned_cols=63  Identities=22%  Similarity=0.367  Sum_probs=46.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      +.++++.||.||+.||+++ +++.|++||+..   +..+-+.-..|      .|                        +=
T Consensus       345 G~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~---~~~~~rf~D~G------~v------------------------~g  390 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASG-GTGEVYVWNLRQ---NSCLHRFVDDG------SV------------------------HG  390 (514)
T ss_pred             cEEeeEEEecCCcEEEEEc-CCceEEEEecCC---cceEEEEeecC------cc------------------------ce
Confidence            3578899999999999999 889999999953   33333332222      11                        34


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ..++.|++|.+|++.+.
T Consensus       391 ts~~~S~ng~ylA~GS~  407 (514)
T KOG2055|consen  391 TSLCISLNGSYLATGSD  407 (514)
T ss_pred             eeeeecCCCceEEeccC
Confidence            56999999998888765

>KOG2110|consensus

Probab=98.29  E-value=2.7e-05  Score=72.43  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=85.9

Q ss_pred             EEecCCCccCCCCCCCCCCC---ceEEEEEcCCCCEEEEE-eCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         14 VIDIPAKQVQGYPGGDKVPA---MVTDILISLDDRYLYTS-NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~v~~---~p~~va~SpDGr~Lyva-~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      |-||.+.+..+.+ . ..+.   ..+++++++.+-+|+.. +...|.|.+||+.+   .+.+..+..+     .      
T Consensus       110 IydI~~MklLhTI-~-t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH-----~------  173 (391)
T KOG2110|consen  110 IYDIKDMKLLHTI-E-TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAH-----K------  173 (391)
T ss_pred             EEecccceeehhh-h-ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEec-----C------
Confidence            4578888888876 2 2333   34455566666677655 44579999999876   3333333332     0      


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                                          +....++||+||..|+.+++-               | ++  +.+......+.+...-+ 
T Consensus       174 --------------------~~lAalafs~~G~llATASeK---------------G-TV--IRVf~v~~G~kl~eFRR-  214 (391)
T KOG2110|consen  174 --------------------GPLAALAFSPDGTLLATASEK---------------G-TV--IRVFSVPEGQKLYEFRR-  214 (391)
T ss_pred             --------------------CceeEEEECCCCCEEEEeccC---------------c-eE--EEEEEcCCccEeeeeeC-
Confidence                                345679999999999998873               2 22  22222111222221111 


Q ss_pred             ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                         | ..  +...+.|+||||+.+|.++. ..++|.+|-+.+
T Consensus       215 ---G-~~--~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~  249 (391)
T KOG2110|consen  215 ---G-TY--PVSIYSLSFSPDSQFLAASS-NTETVHIFKLEK  249 (391)
T ss_pred             ---C-ce--eeEEEEEEECCCCCeEEEec-CCCeEEEEEecc
Confidence               1 11  23578899999999999888 678999999964

>KOG0283|consensus

Probab=98.29  E-value=3.4e-05  Score=77.81  Aligned_cols=90  Identities=29%  Similarity=0.309  Sum_probs=60.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeE--Ee------------eCcee-----------cCCCceE
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ--IF------------LGGKI-----------QSDSGVT  234 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~--i~------------~Gg~~-----------~~~~~v~  234 (290)
                      ....+++|+|||+...++. .+|...+|++.+   .++...  |.            +|-++           +.|..++
T Consensus       452 ~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~---lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR  527 (712)
T KOG0283|consen  452 DLITAVCYSPDGKGAVIGT-FNGYCRFYDTEG---LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR  527 (712)
T ss_pred             hhheeEEeccCCceEEEEE-eccEEEEEEccC---CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence            3577899999999999988 788999998754   221111  10            11111           4566677


Q ss_pred             EecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        235 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ++|..+..   ...-++|.+-++......|+.||+++..+++
T Consensus       528 I~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  528 IYDGRDKD---LVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             EEeccchh---hhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence            77763321   2224677776667788999999999999976

>KOG0771|consensus

Probab=98.27  E-value=6.3e-06  Score=77.50  Aligned_cols=30  Identities=23%  Similarity=0.533  Sum_probs=26.5

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ..+.+++|+||+|+.++. .+|+|.++++.+
T Consensus       283 siSsl~VS~dGkf~AlGT-~dGsVai~~~~~  312 (398)
T KOG0771|consen  283 SISSLAVSDDGKFLALGT-MDGSVAIYDAKS  312 (398)
T ss_pred             cceeEEEcCCCcEEEEec-cCCcEEEEEece
Confidence            578899999999999988 699999998854

>KOG0645|consensus

Probab=98.26  E-value=6.8e-05  Score=67.44  Aligned_cols=119  Identities=15%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ....++++|- |+.|| ++.++.+|++|+...+..-.....+.-++                              ....
T Consensus        16 r~W~~awhp~~g~ilA-scg~Dk~vriw~~~~~~s~~ck~vld~~h------------------------------krsV   64 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILA-SCGTDKAVRIWSTSSGDSWTCKTVLDDGH------------------------------KRSV   64 (312)
T ss_pred             cEEEEEeccCCceEEE-eecCCceEEEEecCCCCcEEEEEeccccc------------------------------hhee
Confidence            4678999998 77666 45568999999986422222221111110                              1468


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      |.+|++|.|++|.+++= .++...  +..   .++.+..+.                .++|    ..+.+-.+++|++|+
T Consensus        65 RsvAwsp~g~~La~aSF-D~t~~I--w~k---~~~efecv~----------------~lEG----HEnEVK~Vaws~sG~  118 (312)
T KOG0645|consen   65 RSVAWSPHGRYLASASF-DATVVI--WKK---EDGEFECVA----------------TLEG----HENEVKCVAWSASGN  118 (312)
T ss_pred             eeeeecCCCcEEEEeec-cceEEE--eec---CCCceeEEe----------------eeec----cccceeEEEEcCCCC
Confidence            99999999998876542 121111  110   111111111                1122    124567799999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +|+...| +.+|.+|.++
T Consensus       119 ~LATCSR-DKSVWiWe~d  135 (312)
T KOG0645|consen  119 YLATCSR-DKSVWIWEID  135 (312)
T ss_pred             EEEEeeC-CCeEEEEEec
Confidence            9999886 6789999996

>KOG0772|consensus

Probab=98.26  E-value=5.1e-06  Score=80.11  Aligned_cols=124  Identities=17%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             EEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412         37 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  115 (290)
Q Consensus        37 ~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v  115 (290)
                      ...+.|+.+-.+.++..+|++++|++.+.... +++.....++                           .  .-.|..-
T Consensus       273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g---------------------------~--Rv~~tsC  323 (641)
T KOG0772|consen  273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG---------------------------K--RVPVTSC  323 (641)
T ss_pred             ccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC---------------------------c--ccCceee
Confidence            45689998888888888999999999764321 2222211111                           0  1246678


Q ss_pred             EEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEE
Q psy11412        116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLY  195 (290)
Q Consensus       116 afsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Ly  195 (290)
                      +|+|||++++....               +| .+-.|+.-    .+.++  |.-.+.. +--.+.....|.||+||++|.
T Consensus       324 ~~nrdg~~iAagc~---------------DG-SIQ~W~~~----~~~v~--p~~~vk~-AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCL---------------DG-SIQIWDKG----SRTVR--PVMKVKD-AHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             ecCCCcchhhhccc---------------CC-ceeeeecC----Ccccc--cceEeee-ccCCCCceeEEEeccccchhh
Confidence            99999999776543               22 22112210    00111  0000000 000123567899999999987


Q ss_pred             EEeCCCCcEEEEEecCCC
Q psy11412        196 TSNWMHGDIRQYDIRDTA  213 (290)
Q Consensus       196 vs~r~~~~V~v~Dv~d~~  213 (290)
                      .=. .++++.+||+....
T Consensus       381 SRg-~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  381 SRG-FDDTLKVWDLRQFK  397 (641)
T ss_pred             hcc-CCCceeeeeccccc
Confidence            655 68999999997543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.25  E-value=8.6e-05  Score=77.36  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=92.6

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +.+.+++|+| |+.+|++++ .+++|++||+...   ..+..+...                                ..
T Consensus       576 ~~V~~l~~~p~~~~~L~Sgs-~Dg~v~iWd~~~~---~~~~~~~~~--------------------------------~~  619 (793)
T PLN00181        576 KRVWSIDYSSADPTLLASGS-DDGSVKLWSINQG---VSIGTIKTK--------------------------------AN  619 (793)
T ss_pred             CCEEEEEEcCCCCCEEEEEc-CCCEEEEEECCCC---cEEEEEecC--------------------------------CC
Confidence            3578999997 778887665 5899999999652   233322111                                23


Q ss_pred             ceEEEE-ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        112 SQMFQL-SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~vaf-sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ...+.| +++|+++++.+.               ++ .+..++....  ...+..     ..+    .......+.|+ |
T Consensus       620 v~~v~~~~~~g~~latgs~---------------dg-~I~iwD~~~~--~~~~~~-----~~~----h~~~V~~v~f~-~  671 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSA---------------DH-KVYYYDLRNP--KLPLCT-----MIG----HSKTVSYVRFV-D  671 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeC---------------CC-eEEEEECCCC--CccceE-----ecC----CCCCEEEEEEe-C
Confidence            456778 457888887654               22 3444443221  000110     001    12346678887 7


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCC---ceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAH---PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~---~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                      +.+|+++. .+++|.+||+.....   ...+..+. |.                              ......+.|+|+
T Consensus       672 ~~~lvs~s-~D~~ikiWd~~~~~~~~~~~~l~~~~-gh------------------------------~~~i~~v~~s~~  719 (793)
T PLN00181        672 SSTLVSSS-TDNTLKLWDLSMSISGINETPLHSFM-GH------------------------------TNVKNFVGLSVS  719 (793)
T ss_pred             CCEEEEEE-CCCEEEEEeCCCCccccCCcceEEEc-CC------------------------------CCCeeEEEEcCC
Confidence            88888887 789999999853211   11111110 11                              013577999999


Q ss_pred             CCEEEEEcC--CCCCCCcc
Q psy11412        268 GKRIYVSSS--LFSPWDKE  284 (290)
Q Consensus       268 G~~L~Van~--~~~~~~~~  284 (290)
                      |++|++++.  ....|++.
T Consensus       720 ~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        720 DGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CCEEEEEeCCCEEEEEECC
Confidence            999999864  55566654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.00011  Score=71.42  Aligned_cols=28  Identities=14%  Similarity=-0.080  Sum_probs=19.0

Q ss_pred             EEEEcCCCCE---EEEEeCC-CCeEEEEEcCC
Q psy11412         37 DILISLDDRY---LYTSNWM-HGDIRQYDIRD   64 (290)
Q Consensus        37 ~va~SpDGr~---Lyva~~~-~g~V~v~dv~d   64 (290)
                      .-++||||+.   +|++... ...|.+.++..
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~  220 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN  220 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCC
Confidence            4489999984   5677542 34677888764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.23  E-value=7.4e-05  Score=69.85  Aligned_cols=129  Identities=22%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             CCCEEEEEeC----CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412         43 DDRYLYTSNW----MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  118 (290)
Q Consensus        43 DGr~Lyva~~----~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs  118 (290)
                      |-+++||.+-    ..++|.|+|.++   .+.++.+..|                                 .--++++|
T Consensus         1 ~~~rvyV~D~~~~~~~~rv~viD~d~---~k~lGmi~~g---------------------------------~~~~~~~s   44 (342)
T PF06433_consen    1 DAHRVYVQDPVFFHMTSRVYVIDADS---GKLLGMIDTG---------------------------------FLGNVALS   44 (342)
T ss_dssp             -TTEEEEEE-GGGGSSEEEEEEETTT---TEEEEEEEEE---------------------------------SSEEEEE-
T ss_pred             CCcEEEEECCccccccceEEEEECCC---CcEEEEeecc---------------------------------cCCceeEC
Confidence            4567888765    246888998643   6778777665                                 22348899


Q ss_pred             cCCCEEEEEcCCCCCcceeecccccCCCc---eeecceeeeeeecccccccCcc-ccCccccCCCCceeEEEEccCCCEE
Q psy11412        119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDA---AFGSDEIMEFIQRNEMRSMPLS-SLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~p~~-~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      |||+.+|+++..   +++.      ..|.   .+.++|..++....++. +|.+ ..    + .......+++|.|||+|
T Consensus        45 pdgk~~y~a~T~---~sR~------~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~----~-~~~~~~~~~ls~dgk~~  109 (342)
T PF06433_consen   45 PDGKTIYVAETF---YSRG------TRGERTDVVEIWDTQTLSPTGEIE-IPPKPRA----Q-VVPYKNMFALSADGKFL  109 (342)
T ss_dssp             TTSSEEEEEEEE---EEET------TEEEEEEEEEEEETTTTEEEEEEE-ETTS-B-------BS--GGGEEE-TTSSEE
T ss_pred             CCCCEEEEEEEE---Eecc------ccccceeEEEEEecCcCcccceEe-cCCcchh----e-ecccccceEEccCCcEE
Confidence            999999998651   1110      1122   33333333322222221 2221 10    0 01234568999999999


Q ss_pred             EEEeCC-CCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        195 YTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       195 yvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |+.|.. ..+|+|.|+..   .+.+.+|++-|
T Consensus       110 ~V~N~TPa~SVtVVDl~~---~kvv~ei~~PG  138 (342)
T PF06433_consen  110 YVQNFTPATSVTVVDLAA---KKVVGEIDTPG  138 (342)
T ss_dssp             EEEEESSSEEEEEEETTT---TEEEEEEEGTS
T ss_pred             EEEccCCCCeEEEEECCC---CceeeeecCCC
Confidence            999976 47899999863   57778877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0973|consensus

Probab=98.23  E-value=2.8e-05  Score=80.35  Aligned_cols=179  Identities=18%  Similarity=0.201  Sum_probs=106.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -+..++.|||+.+|+.... +++|.+|+...-   +.+..+..+                               .+.+-
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~-DnsViiwn~~tF---~~~~vl~~H-------------------------------~s~VK  175 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSL-DNSVIIWNAKTF---ELLKVLRGH-------------------------------QSLVK  175 (942)
T ss_pred             ccceeccCCCccEEEEecc-cceEEEEccccc---eeeeeeecc-------------------------------ccccc
Confidence            3557899999999976654 899999997653   333332221                               14567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++|+|-||+++.-+                ++..+.+|++.++...+.+.. |   ++  ..+....-+-+..||||.+
T Consensus       176 Gvs~DP~Gky~ASqs----------------dDrtikvwrt~dw~i~k~It~-p---f~--~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  176 GVSWDPIGKYFASQS----------------DDRTLKVWRTSDWGIEKSITK-P---FE--ESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             ceEECCccCeeeeec----------------CCceEEEEEcccceeeEeecc-c---hh--hCCCcceeeecccCCCcCe
Confidence            799999999887643                344565566555322222221 1   11  0122245566889999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCce----Eee--------E------------------------EeeCceecCCCceEEec
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPV----LVG--------Q------------------------IFLGGKIQSDSGVTVID  237 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~----~v~--------~------------------------i~~Gg~~~~~~~v~~~~  237 (290)
                      |.+.+-.++......|.+.+..+    +++        +                        +.+|   +.|++++||.
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg---SqDrSlSVW~  310 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG---SQDRSLSVWN  310 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe---cCCccEEEEe
Confidence            99988766544444443322211    111        0                        0112   4688899987


Q ss_pred             CCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        238 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ..    .|+|...----+....-+|.+||||..||+++.
T Consensus       311 T~----~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  311 TA----LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             cC----CCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence            53    333332111112234678999999999999965

>KOG0293|consensus

Probab=98.22  E-value=1.4e-05  Score=75.39  Aligned_cols=114  Identities=24%  Similarity=0.324  Sum_probs=72.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+++|||.|+|.++. .+..+.+||+..+.....-.   .+                              -|-.+.
T Consensus       271 ~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd~~~~y~---~~------------------------------~~~S~~  316 (519)
T KOG0293|consen  271 PVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGDLRHLYP---SG------------------------------LGFSVS  316 (519)
T ss_pred             ceEEEEECCCCCeEEecC-chHheeeccCCcchhhhhcc---cC------------------------------cCCCcc
Confidence            566899999999997655 46789999997632111111   00                              023566


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      ..+.-|||.++.+.+.               + .....++..-     .+       ...|.........++++++||++
T Consensus       317 sc~W~pDg~~~V~Gs~---------------d-r~i~~wdlDg-----n~-------~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  317 SCAWCPDGFRFVTGSP---------------D-RTIIMWDLDG-----NI-------LGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             eeEEccCCceeEecCC---------------C-CcEEEecCCc-----ch-------hhcccccccceeEEEEEcCCCcE
Confidence            7889999998776443               1 1222233211     00       12332222245789999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++... .+..|++|+..
T Consensus       369 vl~v~-~d~~i~l~~~e  384 (519)
T KOG0293|consen  369 VLLVT-VDKKIRLYNRE  384 (519)
T ss_pred             EEEEe-cccceeeechh
Confidence            99888 67889998774

>KOG0646|consensus

Probab=98.21  E-value=4.4e-05  Score=72.83  Aligned_cols=173  Identities=18%  Similarity=0.258  Sum_probs=107.5

Q ss_pred             CCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCC
Q psy11412         19 AKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP   98 (290)
Q Consensus        19 ~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~   98 (290)
                      +.+++.++   -+|+-++.++.+|+|.+|+.+. -.|.|.+|-+..+.   ++..+ .++                    
T Consensus        71 ~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~-i~g~lYlWelssG~---LL~v~-~aH--------------------  122 (476)
T KOG0646|consen   71 KDQVVQYI---VLPGPVHALASSNLGYFLLAGT-ISGNLYLWELSSGI---LLNVL-SAH--------------------  122 (476)
T ss_pred             hhhhhhhc---ccccceeeeecCCCceEEEeec-ccCcEEEEEecccc---HHHHH-Hhh--------------------
Confidence            34444444   5788899999999999997654 47899999997632   22211 110                    


Q ss_pred             CcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc-cccCccccCccccC
Q psy11412         99 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM-RSMPLSSLGSWKYP  177 (290)
Q Consensus        99 ~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~p~~~~~~~~~~  177 (290)
                                -....-+.|+-||.+++.++.               || .+..|++.+....-.. ...|.   ..|  .
T Consensus       123 ----------YQ~ITcL~fs~dgs~iiTgsk---------------Dg-~V~vW~l~~lv~a~~~~~~~p~---~~f--~  171 (476)
T KOG0646|consen  123 ----------YQSITCLKFSDDGSHIITGSK---------------DG-AVLVWLLTDLVSADNDHSVKPL---HIF--S  171 (476)
T ss_pred             ----------ccceeEEEEeCCCcEEEecCC---------------Cc-cEEEEEEEeecccccCCCccce---eee--c
Confidence                      024556999999999997654               33 3444555442211111 11111   111  1


Q ss_pred             CC-CceeEEEEccC--CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412        178 AR-SMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       178 ~~-~~~~~i~~SpD--Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                      .. -...++.+++-  -.+||++. .|.++.+||++-   ..++.++...                              
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~---g~LLlti~fp------------------------------  217 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSL---GVLLLTITFP------------------------------  217 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEec-CCceEEEEEecc---ceeeEEEecC------------------------------
Confidence            11 13455666554  34678887 689999999963   3455444321                              


Q ss_pred             ccCCcceEEEccCCCEEEEEcCCCCCCCcccC
Q psy11412        255 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIY  286 (290)
Q Consensus       255 ~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~~  286 (290)
                        ..+..++++|-+++.|+.++-.+-|.-.||
T Consensus       218 --~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  218 --SSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             --CcceeEEEcccccEEEecCCcceEEeeehh
Confidence              157889999999999999997666665554

>KOG2096|consensus

Probab=98.21  E-value=1.9e-05  Score=72.51  Aligned_cols=157  Identities=18%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCCceee-eEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD--TAHPVLV-GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d--~~~~~~~-~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .-++.++|||||+|+++.. .-.|.||.+-=  .+.-+.+ ..+.+                           .++  .+
T Consensus       230 ~n~~aavSP~GRFia~~gF-TpDVkVwE~~f~kdG~fqev~rvf~L---------------------------kGH--~s  279 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGF-TPDVKVWEPIFTKDGTFQEVKRVFSL---------------------------KGH--QS  279 (420)
T ss_pred             cccceeeCCCCcEEEEecC-CCCceEEEEEeccCcchhhhhhhhee---------------------------ccc--hh
Confidence            4457899999999999987 45789998631  1111111 11111                           111  15


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeee-ee---ecccccccCccccCccccCCCCceeEEE
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIME-FI---QRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~-~~---~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                      ++..++|||+.+++..++.. +.|-+               |++.- ..   .+..++..+. ...    ..+..|-.+.
T Consensus       280 aV~~~aFsn~S~r~vtvSkD-G~wri---------------wdtdVrY~~~qDpk~Lk~g~~-pl~----aag~~p~RL~  338 (420)
T KOG2096|consen  280 AVLAAAFSNSSTRAVTVSKD-GKWRI---------------WDTDVRYEAGQDPKILKEGSA-PLH----AAGSEPVRLE  338 (420)
T ss_pred             heeeeeeCCCcceeEEEecC-CcEEE---------------eeccceEecCCCchHhhcCCc-chh----hcCCCceEEE
Confidence            77889999999999887652 22221               22110 00   0112221110 000    0123456799


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                      +||.|+.|.+|-  ..++.+|...+.........+ .+                                ..-..+.|+|
T Consensus       339 lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~-h~--------------------------------~~Is~is~~~  383 (420)
T KOG2096|consen  339 LSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDI-HS--------------------------------TTISSISYSS  383 (420)
T ss_pred             eCCCCcEEEeec--CCceEEEEcccCccchhHHHh-hc--------------------------------CceeeEEecC
Confidence            999999999886  346888865431111011111 01                                1356799999


Q ss_pred             CCCEEEEEcC
Q psy11412        267 DGKRIYVSSS  276 (290)
Q Consensus       267 DG~~L~Van~  276 (290)
                      ||++++.+..
T Consensus       384 ~g~~~atcGd  393 (420)
T KOG2096|consen  384 DGKYIATCGD  393 (420)
T ss_pred             CCcEEeeecc
Confidence            9999999876

>KOG2919|consensus

Probab=98.20  E-value=1.3e-05  Score=73.61  Aligned_cols=121  Identities=19%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceee-eEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC-
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV-GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS-  111 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~-~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g-  111 (290)
                      ..++++|||||.+||. ++ ...|++||+..+++--.. .++.-| .                           ....+ 
T Consensus       160 aAhsL~Fs~DGeqlfa-Gy-krcirvFdt~RpGr~c~vy~t~~~~-k---------------------------~gq~gi  209 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFA-GY-KRCIRVFDTSRPGRDCPVYTTVTKG-K---------------------------FGQKGI  209 (406)
T ss_pred             hheeEEecCCCCeEee-cc-cceEEEeeccCCCCCCcchhhhhcc-c---------------------------ccccce
Confidence            4578999999999984 44 679999999654432211 111110 0                           00012 


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|||-...++....-...++.+..     ++             ++++..     ..+    ..+++.++.+.+||
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~-----~~-------------~~pl~l-----lgg----h~gGvThL~~~edG  262 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYND-----DG-------------RRPLQL-----LGG----HGGGVTHLQWCEDG  262 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEec-----CC-------------CCceee-----ecc----cCCCeeeEEeccCc
Confidence            3458999988766655543222222110     11             111111     001    23578899999999


Q ss_pred             CEEEEEeCCCCcEEEEEecC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ..||+..|-+..|..|||..
T Consensus       263 n~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             CeecccccCCCeEEEEeehh
Confidence            99999999999999999954

>KOG0772|consensus

Probab=98.20  E-value=3.9e-05  Score=74.12  Aligned_cols=202  Identities=16%  Similarity=0.191  Sum_probs=118.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC-CCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~-~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..+++.|.|-++|+..+ +-+|.+||+.-- ...+.-.+                      ..|..        +...
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~-Dy~v~~wDf~gMdas~~~fr~----------------------l~P~E--------~h~i  217 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSL-DYTVKFWDFQGMDASMRSFRQ----------------------LQPCE--------THQI  217 (641)
T ss_pred             EEEEeeecCCCceeeeccc-cceEEEEecccccccchhhhc----------------------cCccc--------cccc
Confidence            5678999999999987776 789999999531 11111110                      01111        2456


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.+.||+.|..+.|+..- +..-+  ++   .+|-.+  ..-..  ..+-|..+....  |    .-.......++|+-+
T Consensus       218 ~sl~ys~Tg~~iLvvsg~-aqakl--~D---RdG~~~--~e~~K--GDQYI~Dm~nTK--G----Hia~lt~g~whP~~k  281 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGS-AQAKL--LD---RDGFEI--VEFSK--GDQYIRDMYNTK--G----HIAELTCGCWHPDNK  281 (641)
T ss_pred             ceeeecCCCCeEEEEecC-cceeE--Ec---cCCcee--eeeec--cchhhhhhhccC--C----ceeeeeccccccCcc
Confidence            889999999888887541 11000  10   122111  01000  011111111000  0    002234457899988


Q ss_pred             EEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCce-e-----------------cCCCceEEecCCCCCCCCCcceeecc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGK-I-----------------QSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~-~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                      --+.++-.++++++||+.+.. +..++...+.|+. +                 .-||.+..|+...+.+.|.-......
T Consensus       282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence            877777789999999997643 3334444444432 2                 56777899987666666664433333


Q ss_pred             cccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      .-|..-..++||+||++|+.-..  +++.||
T Consensus       362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCCceeEEEeccccchhhhccCCCceeeee
Confidence            33345789999999999998644  888887

>KOG0973|consensus

Probab=98.17  E-value=2.3e-05  Score=80.90  Aligned_cols=197  Identities=16%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             CceeEEEEEecCCCccCCCCC----CCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412          7 GTYKADKVIDIPAKQVQGYPG----GDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~----~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      +-|..+.|.+-...+...-..    -..=.+.+..+-|||||++||++. ++..|.+|.....+....-+  ..|+. .+
T Consensus        40 ~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS-DD~~v~iW~~~~~~~~~~fg--s~g~~-~~  115 (942)
T KOG0973|consen   40 VIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS-DDRLVMIWERAEIGSGTVFG--STGGA-KN  115 (942)
T ss_pred             eeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc-CcceEEEeeecccCCccccc--ccccc-cc
Confidence            468888877544333222100    001234677888999999999775 47889999875311000000  00100 00


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE  162 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~  162 (290)
                      ..+.-++           ..+.++.  +....+..+||+++|...+-                ++.+.+++...|...+.
T Consensus       116 vE~wk~~-----------~~l~~H~--~DV~Dv~Wsp~~~~lvS~s~----------------DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen  116 VESWKVV-----------SILRGHD--SDVLDVNWSPDDSLLVSVSL----------------DNSVIIWNAKTFELLKV  166 (942)
T ss_pred             cceeeEE-----------EEEecCC--CccceeccCCCccEEEEecc----------------cceEEEEccccceeeee
Confidence            0000000           0001111  34566999999998886543                22344455555421111


Q ss_pred             ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412        163 MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       163 i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      +.        +    ....+-++.|.|=|+|+.+-. .|.+|.||++.+-+-.+.|.. +...                 
T Consensus       167 l~--------~----H~s~VKGvs~DP~Gky~ASqs-dDrtikvwrt~dw~i~k~It~-pf~~-----------------  215 (942)
T KOG0973|consen  167 LR--------G----HQSLVKGVSWDPIGKYFASQS-DDRTLKVWRTSDWGIEKSITK-PFEE-----------------  215 (942)
T ss_pred             ee--------c----ccccccceEECCccCeeeeec-CCceEEEEEcccceeeEeecc-chhh-----------------
Confidence            11        1    113455699999999987766 789999999866222222221 0110                 


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                       .|.         .-+-+.+.+||||++|.++|+.
T Consensus       216 -~~~---------~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  216 -SPL---------TTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             -CCC---------cceeeecccCCCcCeecchhhc
Confidence             000         0145779999999999999884

>PTZ00421 coronin; Provisional

Probab=98.14  E-value=6.8e-05  Score=74.15  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             CCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        110 GSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      +....++|+| |+++|+.+++               ++ .+.+|++.+........ .+.....+    ....+..|+|+
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~---------------Dg-tIkIWdi~~~~~~~~~~-~~l~~L~g----H~~~V~~l~f~  134 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASE---------------DG-TIMGWGIPEEGLTQNIS-DPIVHLQG----HTKKVGIVSFH  134 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeC---------------CC-EEEEEecCCCccccccC-cceEEecC----CCCcEEEEEeC
Confidence            4678899999 8888887765               22 33334432200000000 00000111    12356789999


Q ss_pred             cCC-CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        189 LDD-RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       189 pDG-r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                      |++ ..|+++. .+++|.+||+..   ...+..+.. .                              .+....++|+||
T Consensus       135 P~~~~iLaSgs-~DgtVrIWDl~t---g~~~~~l~~-h------------------------------~~~V~sla~spd  179 (493)
T PTZ00421        135 PSAMNVLASAG-ADMVVNVWDVER---GKAVEVIKC-H------------------------------SDQITSLEWNLD  179 (493)
T ss_pred             cCCCCEEEEEe-CCCEEEEEECCC---CeEEEEEcC-C------------------------------CCceEEEEEECC
Confidence            987 5666666 689999999964   222222211 1                              014677888999


Q ss_pred             CCEEEEEcC--CCCCCC
Q psy11412        268 GKRIYVSSS--LFSPWD  282 (290)
Q Consensus       268 G~~L~Van~--~~~~~~  282 (290)
                      |+.|++++.  .+.-||
T Consensus       180 G~lLatgs~Dg~IrIwD  196 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIID  196 (493)
T ss_pred             CCEEEEecCCCEEEEEE
Confidence            988888764  455555

>KOG0293|consensus

Probab=98.14  E-value=6.2e-05  Score=71.10  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .-+..+.||++|+||+++.- +-+.-+|.+....+.++..+. .|+.                              ..+
T Consensus       225 dEVWfl~FS~nGkyLAsaSk-D~Taiiw~v~~d~~~kl~~tl-vgh~------------------------------~~V  272 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASK-DSTAIIWIVVYDVHFKLKKTL-VGHS------------------------------QPV  272 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccC-CceEEEEEEecCcceeeeeee-eccc------------------------------Cce
Confidence            35788999999999998875 668889999765554444332 2210                              345


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      --+.+|||.++|....-                ...+..+|+.+..   .....+.+        .+..+...+.-|||.
T Consensus       273 ~yi~wSPDdryLlaCg~----------------~e~~~lwDv~tgd---~~~~y~~~--------~~~S~~sc~W~pDg~  325 (519)
T KOG0293|consen  273 SYIMWSPDDRYLLACGF----------------DEVLSLWDVDTGD---LRHLYPSG--------LGFSVSSCAWCPDGF  325 (519)
T ss_pred             EEEEECCCCCeEEecCc----------------hHheeeccCCcch---hhhhcccC--------cCCCcceeEEccCCc
Confidence            66999999998886532                1123334433210   01111110        123466789999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      .+.+.. -+.+|.-||++-    ..++.+                             .|.+. -....+++++||++++
T Consensus       326 ~~V~Gs-~dr~i~~wdlDg----n~~~~W-----------------------------~gvr~-~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  326 RFVTGS-PDRTIIMWDLDG----NILGNW-----------------------------EGVRD-PKVHDLAITYDGKYVL  370 (519)
T ss_pred             eeEecC-CCCcEEEecCCc----chhhcc-----------------------------ccccc-ceeEEEEEcCCCcEEE
Confidence            977666 678999999841    222221                             11111 0367899999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      ....
T Consensus       371 ~v~~  374 (519)
T KOG0293|consen  371 LVTV  374 (519)
T ss_pred             EEec
Confidence            8753

>KOG0288|consensus

Probab=98.12  E-value=2.9e-05  Score=73.17  Aligned_cols=31  Identities=13%  Similarity=0.287  Sum_probs=26.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT   65 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~   65 (290)
                      ....+.|+++++++.++.. ++.+++|++.+.
T Consensus       221 ~it~~d~d~~~~~~iAas~-d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASN-DKNLRLWNVDSL  251 (459)
T ss_pred             CcceeeecCCCceEEeecC-CCceeeeeccch
Confidence            4778999999999988765 789999999763

>KOG2139|consensus

Probab=98.10  E-value=0.0001  Score=68.67  Aligned_cols=165  Identities=18%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.++...+||..|..+.+++..|.+||.+.+. ...+.  ..|                               .+|..
T Consensus       197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~--~~g-------------------------------lgg~s  242 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLI--PKG-------------------------------LGGFS  242 (445)
T ss_pred             eeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-ccccc--ccC-------------------------------CCcee
Confidence            466899999999999999999999999987532 11111  111                               25677


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+.+||||.+|+.+.-     |          + .+.+++-..      .     -.-+.|.+.. ..+.....||+|+|
T Consensus       243 lLkwSPdgd~lfaAt~-----d----------a-vfrlw~e~q------~-----wt~erw~lgs-grvqtacWspcGsf  294 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATC-----D----------A-VFRLWQENQ------S-----WTKERWILGS-GRVQTACWSPCGSF  294 (445)
T ss_pred             eEEEcCCCCEEEEecc-----c----------c-eeeeehhcc------c-----ceecceeccC-CceeeeeecCCCCE
Confidence            8999999999998753     1          1 222221100      0     0012232222 24455679999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEE-ecCCCCCCCCCcceeec-ccccCCcceEEEccCCCEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV-IDDPELDKQPDPVIIKG-RRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~-~~~~~~~~~~~~~~~~~-~~~~~~P~~~a~sPDG~~L  271 (290)
                      |..+.-++-  .+|.+.-+++......  .++    -..+.+ .|...      .....| ...++.++.++++|.|.+|
T Consensus       295 LLf~~sgsp--~lysl~f~~~~~~~~~--~~~----~k~~lliaDL~e------~ti~ag~~l~cgeaq~lawDpsGeyL  360 (445)
T KOG2139|consen  295 LLFACSGSP--RLYSLTFDGEDSVFLR--PQS----IKRVLLIADLQE------VTICAGQRLCCGEAQCLAWDPSGEYL  360 (445)
T ss_pred             EEEEEcCCc--eEEEEeecCCCccccC--ccc----ceeeeeeccchh------hhhhcCcccccCccceeeECCCCCEE
Confidence            887774443  4555532222111110  000    011111 12111      011112 3446779999999999999


Q ss_pred             EEE
Q psy11412        272 YVS  274 (290)
Q Consensus       272 ~Va  274 (290)
                      +|.
T Consensus       361 av~  363 (445)
T KOG2139|consen  361 AVI  363 (445)
T ss_pred             EEE
Confidence            997

>KOG0288|consensus

Probab=98.10  E-value=6.5e-05  Score=70.84  Aligned_cols=148  Identities=18%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....|..+  + ..+.++-.+.+|+.||+..   ...+.++.+|                                +...
T Consensus       304 ~cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs---~~~~~sv~~g--------------------------------g~vt  345 (459)
T KOG0288|consen  304 QCNDIVCS--I-SDVISGHFDKKVRFWDIRS---ADKTRSVPLG--------------------------------GRVT  345 (459)
T ss_pred             cccceEec--c-eeeeecccccceEEEeccC---CceeeEeecC--------------------------------ccee
Confidence            34456655  2 3345666688999999864   3334444444                                3566


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+.++++|..|-....               ++ .+..+++..   .....+...   .+.  -.......+.|||||++
T Consensus       346 Sl~ls~~g~~lLsssR---------------Dd-tl~viDlRt---~eI~~~~sA---~g~--k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  346 SLDLSMDGLELLSSSR---------------DD-TLKVIDLRT---KEIRQTFSA---EGF--KCASDWTRVVFSPDGSY  401 (459)
T ss_pred             eEeeccCCeEEeeecC---------------CC-ceeeeeccc---ccEEEEeec---ccc--ccccccceeEECCCCce
Confidence            7899999998887643               11 222233221   222211110   010  00123456899999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      +.+.. .+++|.||++.. +  ++.......+.                   .          .....++|+|.|+.|+.
T Consensus       402 vaAGS-~dgsv~iW~v~t-g--KlE~~l~~s~s-------------------~----------~aI~s~~W~~sG~~Lls  448 (459)
T KOG0288|consen  402 VAAGS-ADGSVYIWSVFT-G--KLEKVLSLSTS-------------------N----------AAITSLSWNPSGSGLLS  448 (459)
T ss_pred             eeecc-CCCcEEEEEccC-c--eEEEEeccCCC-------------------C----------cceEEEEEcCCCchhhc
Confidence            88877 799999999953 2  22211111110                   0          03577999999999998


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      |..
T Consensus       449 adk  451 (459)
T KOG0288|consen  449 ADK  451 (459)
T ss_pred             ccC
Confidence            865

>KOG0285|consensus

Probab=98.10  E-value=0.00014  Score=67.65  Aligned_cols=181  Identities=16%  Similarity=0.150  Sum_probs=111.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+.++++.|-+.+++++ ..++++.+||+..   .++..++ +|+       +                       ...
T Consensus       152 gWVr~vavdP~n~wf~tg-s~DrtikIwDlat---g~Lkltl-tGh-------i-----------------------~~v  196 (460)
T KOG0285|consen  152 GWVRSVAVDPGNEWFATG-SADRTIKIWDLAT---GQLKLTL-TGH-------I-----------------------ETV  196 (460)
T ss_pred             ceEEEEeeCCCceeEEec-CCCceeEEEEccc---CeEEEee-cch-------h-----------------------hee
Confidence            367899999998888655 4689999999975   2222211 121       0                       468


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      |+++||+-..+||.+.|                ++.+.-||+..   .+.++.     ..|    .-..++.+.+.|-=+
T Consensus       197 r~vavS~rHpYlFs~ge----------------dk~VKCwDLe~---nkvIR~-----YhG----HlS~V~~L~lhPTld  248 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGE----------------DKQVKCWDLEY---NKVIRH-----YHG----HLSGVYCLDLHPTLD  248 (460)
T ss_pred             eeeeecccCceEEEecC----------------CCeeEEEechh---hhhHHH-----hcc----ccceeEEEeccccce
Confidence            99999999999999876                23343344432   333431     111    114678899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCc-------eEeeEE---eeCcee---cCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHP-------VLVGQI---FLGGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~-------~~v~~i---~~Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      .|+.+.| +.+++|||+......       ..+.++   ++..++   +-|.+|.+||.....+     ...++.--...
T Consensus       249 vl~t~gr-Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-----~~tlt~hkksv  322 (460)
T KOG0285|consen  249 VLVTGGR-DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-----MITLTHHKKSV  322 (460)
T ss_pred             eEEecCC-cceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-----eEeeeccccee
Confidence            9988884 789999999542211       112222   233333   6788999999543211     01111111247


Q ss_pred             ceEEEccCCCEEEEEcC-CCCCCC
Q psy11412        260 QMFQLSLDGKRIYVSSS-LFSPWD  282 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~-~~~~~~  282 (290)
                      |.+++.|+-...+.|+. -+..|+
T Consensus       323 ral~lhP~e~~fASas~dnik~w~  346 (460)
T KOG0285|consen  323 RALCLHPKENLFASASPDNIKQWK  346 (460)
T ss_pred             eEEecCCchhhhhccCCccceecc
Confidence            88888887766655544 555554

>KOG0289|consensus

Probab=98.09  E-value=0.00016  Score=68.65  Aligned_cols=150  Identities=16%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+-+.++.+.|.|.||..++. +++....|+++........   ..                             ..+-.
T Consensus       303 ~~~V~~ls~h~tgeYllsAs~-d~~w~Fsd~~~g~~lt~vs---~~-----------------------------~s~v~  349 (506)
T KOG0289|consen  303 EEPVTGLSLHPTGEYLLSASN-DGTWAFSDISSGSQLTVVS---DE-----------------------------TSDVE  349 (506)
T ss_pred             cccceeeeeccCCcEEEEecC-CceEEEEEccCCcEEEEEe---ec-----------------------------cccce
Confidence            345678999999999988864 7888888887643222211   00                             00124


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      -...+|||||-.+....+               ++ .+.+|++..   +..++.+|     +    ..+....|.||-+|
T Consensus       350 ~ts~~fHpDgLifgtgt~---------------d~-~vkiwdlks---~~~~a~Fp-----g----ht~~vk~i~FsENG  401 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTP---------------DG-VVKIWDLKS---QTNVAKFP-----G----HTGPVKAISFSENG  401 (506)
T ss_pred             eEEeeEcCCceEEeccCC---------------Cc-eEEEEEcCC---ccccccCC-----C----CCCceeEEEeccCc
Confidence            556899999965554222               22 343344332   22233222     1    12457789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      =+|.++. .++.|.+||+..   .+...++.....                              .....+.|++.|++|
T Consensus       402 Y~Lat~a-dd~~V~lwDLRK---l~n~kt~~l~~~------------------------------~~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  402 YWLATAA-DDGSVKLWDLRK---LKNFKTIQLDEK------------------------------KEVNSLSFDQSGTYL  447 (506)
T ss_pred             eEEEEEe-cCCeEEEEEehh---hcccceeecccc------------------------------ccceeEEEcCCCCeE
Confidence            9999988 677799999954   233334333221                              136779999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ..+.+
T Consensus       448 ~~~g~  452 (506)
T KOG0289|consen  448 GIAGS  452 (506)
T ss_pred             Eeecc
Confidence            88865

>KOG0310|consensus

Probab=98.06  E-value=4.4e-05  Score=73.08  Aligned_cols=115  Identities=17%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..++++.|-.||+.|+..+ .+|.|.+||...   ...+.++...                                ..|
T Consensus        69 ~~v~s~~fR~DG~LlaaGD-~sG~V~vfD~k~---r~iLR~~~ah--------------------------------~ap  112 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGD-ESGHVKVFDMKS---RVILRQLYAH--------------------------------QAP  112 (487)
T ss_pred             cceeEEEeecCCeEEEccC-CcCcEEEecccc---HHHHHHHhhc--------------------------------cCc
Confidence            3678999999999887655 589999999533   1112111111                                245


Q ss_pred             eE-EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccC
Q psy11412        113 QM-FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLD  190 (290)
Q Consensus       113 r~-vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpD  190 (290)
                      -| +-|+|++.++++...               |+.....|++..   .....          .+.+ ...+...+++|-
T Consensus       113 v~~~~f~~~d~t~l~s~s---------------Dd~v~k~~d~s~---a~v~~----------~l~~htDYVR~g~~~~~  164 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSGS---------------DDKVVKYWDLST---AYVQA----------ELSGHTDYVRCGDISPA  164 (487)
T ss_pred             eeEEEecccCCeEEEecC---------------CCceEEEEEcCC---cEEEE----------EecCCcceeEeeccccC
Confidence            44 559999999998765               233332233221   00100          1111 246778899999


Q ss_pred             CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ...+.+|+-.++.|.+||+..
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             CCeEEEecCCCceEEEEEecc
Confidence            998889887899999999853

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00017  Score=69.94  Aligned_cols=29  Identities=10%  Similarity=0.057  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCE-EEE-EeC-CCCeEEEEEcCC
Q psy11412         36 TDILISLDDRY-LYT-SNW-MHGDIRQYDIRD   64 (290)
Q Consensus        36 ~~va~SpDGr~-Lyv-a~~-~~g~V~v~dv~d   64 (290)
                      ..-.+||||++ +|. +.. ....|.++|+..
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t  222 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT  222 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCC
Confidence            36789999985 664 443 245688888854

>KOG0284|consensus

Probab=98.04  E-value=6.7e-05  Score=70.68  Aligned_cols=175  Identities=17%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         29 DKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        29 ~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .++...+..|..+|+||+|.+++. +|.+.+|+...- .-+.+                        .+.|.        
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~-SGEFtLWNg~~f-nFEti------------------------lQaHD--------  138 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQ-SGEFTLWNGTSF-NFETI------------------------LQAHD--------  138 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecc-cccEEEecCcee-eHHHH------------------------hhhhc--------
Confidence            456667788999999999998875 899999985210 00000                        00110        


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                       +.+|.|..|.+|.++...+.                ++.+..|+..-    +.+..+..        ......++++||
T Consensus       139 -s~Vr~m~ws~~g~wmiSgD~----------------gG~iKyWqpnm----nnVk~~~a--------hh~eaIRdlafS  189 (464)
T KOG0284|consen  139 -SPVRTMKWSHNGTWMISGDK----------------GGMIKYWQPNM----NNVKIIQA--------HHAEAIRDLAFS  189 (464)
T ss_pred             -ccceeEEEccCCCEEEEcCC----------------CceEEecccch----hhhHHhhH--------hhhhhhheeccC
Confidence             46789999999998886543                33333333210    01111000        011346789999


Q ss_pred             c-CCCEEEEEeCCCCcEEEEEecCCCCceEe----------------eEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        189 L-DDRYLYTSNWMHGDIRQYDIRDTAHPVLV----------------GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       189 p-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v----------------~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                      | |-+||-+|  ++|+|.+||-..+...+.+                +-|.+|   ++|+.|++||++.-...   .++-
T Consensus       190 pnDskF~t~S--dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg---skDnlVKlWDprSg~cl---~tlh  261 (464)
T KOG0284|consen  190 PNDSKFLTCS--DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG---SKDNLVKLWDPRSGSCL---ATLH  261 (464)
T ss_pred             CCCceeEEec--CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc---cCCceeEeecCCCcchh---hhhh
Confidence            9 45554333  6999999998643221111                112222   46788999997652210   0111


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      +.+  ...-.+.|+|+|.+|+.++.
T Consensus       262 ~HK--ntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  262 GHK--NTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             hcc--ceEEEEEEcCCCCeeEEccC
Confidence            111  13677899999999999865

>KOG0265|consensus

Probab=98.00  E-value=0.00024  Score=64.79  Aligned_cols=186  Identities=16%  Similarity=0.162  Sum_probs=109.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+-++-+.|+|||.+++++++ +..|.+|++...-+.  ...++ |+                     .         +.
T Consensus        47 ~geI~~~~F~P~gs~~aSgG~-Dr~I~LWnv~gdceN--~~~lk-gH---------------------s---------gA   92 (338)
T KOG0265|consen   47 KGEIYTIKFHPDGSCFASGGS-DRAIVLWNVYGDCEN--FWVLK-GH---------------------S---------GA   92 (338)
T ss_pred             cceEEEEEECCCCCeEeecCC-cceEEEEeccccccc--eeeec-cc---------------------c---------ce
Confidence            345677899999999987765 789999997542211  11111 11                     0         34


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      .-.+.|.+|++.+|.++.                +.++..||+..   .+.++.     ..+    .......+.-+.-|
T Consensus        93 VM~l~~~~d~s~i~S~gt----------------Dk~v~~wD~~t---G~~~rk-----~k~----h~~~vNs~~p~rrg  144 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCGT----------------DKTVRGWDAET---GKRIRK-----HKG----HTSFVNSLDPSRRG  144 (338)
T ss_pred             eEeeeeccCCCEEEEecC----------------CceEEEEeccc---ceeeeh-----hcc----ccceeeecCccccC
Confidence            667899999999998754                23444455433   222221     000    11344556666678


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCce------EeeEEe---eCcee---cCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPV------LVGQIF---LGGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~------~v~~i~---~Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      -.|..|...++++.+||+...+..+      .+..+.   .+.++   .=|+.+.+||...++..   -.++|..  +-.
T Consensus       145 ~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~---~~lsGh~--DtI  219 (338)
T KOG0265|consen  145 PQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL---YTLSGHA--DTI  219 (338)
T ss_pred             CeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce---EEeeccc--Cce
Confidence            8999999889999999996322211      111110   11111   23567888987443211   1223332  236


Q ss_pred             ceEEEccCCCEEEEEcC--CCCCCCcc
Q psy11412        260 QMFQLSLDGKRIYVSSS--LFSPWDKE  284 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~--~~~~~~~~  284 (290)
                      -++.+||+|.+|..-..  +...||..
T Consensus       220 t~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  220 TGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             eeEEeccCCCccccccccceEEEEEec
Confidence            88999999999986433  55556543

>KOG1274|consensus

Probab=98.00  E-value=0.00012  Score=74.85  Aligned_cols=145  Identities=15%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      .+-|+++..+...+..+  -...+-+.++.++|.|.+|+|+.- +|+|.+|++++......+.     + +.+       
T Consensus       118 ~~vK~~~~~D~s~~~~l--rgh~apVl~l~~~p~~~fLAvss~-dG~v~iw~~~~~~~~~tl~-----~-v~k-------  181 (933)
T KOG1274|consen  118 TAVKLLNLDDSSQEKVL--RGHDAPVLQLSYDPKGNFLAVSSC-DGKVQIWDLQDGILSKTLT-----G-VDK-------  181 (933)
T ss_pred             eeEEEEeccccchheee--cccCCceeeeeEcCCCCEEEEEec-CceEEEEEcccchhhhhcc-----c-CCc-------
Confidence            34578888766555543  235667889999999999999975 8999999998732111111     1 000       


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                       +.+....            .---.+++||+|..|.+... .+.+-++..     .+ +.....         ++.   .
T Consensus       182 -~n~~~~s------------~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r-----~~-we~~f~---------Lr~---~  229 (933)
T KOG1274|consen  182 -DNEFILS------------RICTRLAWHPKGGTLAVPPV-DNTVKVYSR-----KG-WELQFK---------LRD---K  229 (933)
T ss_pred             -ccccccc------------ceeeeeeecCCCCeEEeecc-CCeEEEEcc-----CC-ceehee---------ecc---c
Confidence             0000000            11223789999766666543 111111110     01 111011         000   0


Q ss_pred             ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                            . ....-..+.+||.|+||+++. .+|.|.|||+.
T Consensus       230 ------~-~ss~~~~~~wsPnG~YiAAs~-~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 ------L-SSSKFSDLQWSPNGKYIAAST-LDGQILVWNVD  262 (933)
T ss_pred             ------c-cccceEEEEEcCCCcEEeeec-cCCcEEEEecc
Confidence                  0 001246789999999999888 89999999996

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.00091  Score=61.21  Aligned_cols=145  Identities=15%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             EEEecC--CCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         13 KVIDIP--AKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        13 ~~~~~~--~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .++||-  ++.++...  ..+.++-.++.+|  |+++||+++ ++-+.++|+.++..|.+.+.....             
T Consensus       109 ~IvDIS~P~sP~~~~~--lnt~gyaygv~vs--Gn~aYVadl-ddgfLivdvsdpssP~lagrya~~-------------  170 (370)
T COG5276         109 RIVDISTPDSPTLIGF--LNTDGYAYGVYVS--GNYAYVADL-DDGFLIVDVSDPSSPQLAGRYALP-------------  170 (370)
T ss_pred             EEEeccCCCCcceecc--ccCCceEEEEEec--CCEEEEeec-cCcEEEEECCCCCCceeeeeeccC-------------
Confidence            455664  44444332  2344566666664  999999999 556889999998888877643221             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        +...++++.|  |+++|++.-               ++ -+.++|+.+...+..+..     
T Consensus       171 ------------------~~d~~~v~IS--Gn~AYvA~~---------------d~-GL~ivDVSnp~sPvli~~-----  209 (370)
T COG5276         171 ------------------GGDTHDVAIS--GNYAYVAWR---------------DG-GLTIVDVSNPHSPVLIGS-----  209 (370)
T ss_pred             ------------------CCCceeEEEe--cCeEEEEEe---------------CC-CeEEEEccCCCCCeEEEE-----
Confidence                              1233667765  789999753               23 244566655322222211     


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                       -.|    ++..+.+.+|++  +.|+.. .+..|.+.|++++..+.+.+...+.
T Consensus       210 -~n~----g~g~~sv~vsdn--r~y~vv-y~egvlivd~s~~ssp~~~gsyet~  255 (370)
T COG5276         210 -YNT----GPGTYSVSVSDN--RAYLVV-YDEGVLIVDVSGPSSPTVFGSYETS  255 (370)
T ss_pred             -Eec----CCceEEEEecCC--eeEEEE-cccceEEEecCCCCCceEeeccccC
Confidence             011    124566666665  556666 4556888999888777777766553

>KOG2110|consensus

Probab=97.99  E-value=0.00051  Score=64.12  Aligned_cols=170  Identities=18%  Similarity=0.200  Sum_probs=95.7

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      ..-+++++.++.+.-..   .-+...-.|-+  .-++|.|.-.  +.|.+||+.+   .+++.++..-            
T Consensus        68 r~Lkv~~~Kk~~~ICe~---~fpt~IL~Vrm--Nr~RLvV~Le--e~IyIydI~~---MklLhTI~t~------------  125 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEI---FFPTSILAVRM--NRKRLVVCLE--ESIYIYDIKD---MKLLHTIETT------------  125 (391)
T ss_pred             ceEEEEEcccCceEEEE---ecCCceEEEEE--ccceEEEEEc--ccEEEEeccc---ceeehhhhcc------------
Confidence            45667777766654433   23444445555  4567766643  5699999976   5665544221            


Q ss_pred             cCCCCcCCCCcceeeccccCCCce-EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQ-MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr-~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                              |           ..|. -.||||+..-.|++=...            .+.+.+.++++.+.   +.+..+. 
T Consensus       126 --------~-----------~n~~gl~AlS~n~~n~ylAyp~s------------~t~GdV~l~d~~nl---~~v~~I~-  170 (391)
T KOG2110|consen  126 --------P-----------PNPKGLCALSPNNANCYLAYPGS------------TTSGDVVLFDTINL---QPVNTIN-  170 (391)
T ss_pred             --------C-----------CCccceEeeccCCCCceEEecCC------------CCCceEEEEEcccc---eeeeEEE-
Confidence                    0           1232 245666554334432210            11223444555442   1111111 


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCc-EEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCc
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDP  247 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~-V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~  247 (290)
                              ...+..+.++||+||..|+++. ..|+ |+||++.+   ...+.+..-|-.                  |  
T Consensus       171 --------aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v~~---G~kl~eFRRG~~------------------~--  218 (391)
T KOG2110|consen  171 --------AHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSVPE---GQKLYEFRRGTY------------------P--  218 (391)
T ss_pred             --------ecCCceeEEEECCCCCEEEEec-cCceEEEEEEcCC---ccEeeeeeCCce------------------e--
Confidence                    0124567899999999999887 4555 78998854   334444433331                  0  


Q ss_pred             ceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        248 VIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       248 ~~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                               -.-..++|+||+++|.+++++
T Consensus       219 ---------~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  219 ---------VSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             ---------eEEEEEEECCCCCeEEEecCC
Confidence                     145789999999999999774

>KOG1407|consensus

Probab=97.98  E-value=0.00031  Score=63.04  Aligned_cols=152  Identities=19%  Similarity=0.203  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++.+|...=++++..++.+|++||+..   .+.+.++..-                                .+--
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~---~k~~~~i~~~--------------------------------~eni  110 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRS---GKCTARIETK--------------------------------GENI  110 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEecc---CcEEEEeecc--------------------------------Ccce
Confidence            4556777777666777777889999999865   3444433221                                2345


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++.+|+|.+..+.|.               ++ .+..++...   .+.+...+          -.-...++.++-++.+
T Consensus       111 ~i~wsp~g~~~~~~~k---------------dD-~it~id~r~---~~~~~~~~----------~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen  111 NITWSPDGEYIAVGNK---------------DD-RITFIDART---YKIVNEEQ----------FKFEVNEISWNNSNDL  161 (313)
T ss_pred             EEEEcCCCCEEEEecC---------------cc-cEEEEEecc---cceeehhc----------ccceeeeeeecCCCCE
Confidence            5899999999999876               22 232233322   22222100          1124567889988988


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      .+.++ |.|.|.+..-.   .++.+..|..                      |+         ..=--+.|+|+||++++
T Consensus       162 Fflt~-GlG~v~ILsyp---sLkpv~si~A----------------------H~---------snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  162 FFLTN-GLGCVEILSYP---SLKPVQSIKA----------------------HP---------SNCICIEFDPDGRYFAT  206 (313)
T ss_pred             EEEec-CCceEEEEecc---cccccccccc----------------------CC---------cceEEEEECCCCceEee
Confidence            88888 88999887553   2344444321                      00         12356999999999999


Q ss_pred             EcC--CCCCCCcc
Q psy11412        274 SSS--LFSPWDKE  284 (290)
Q Consensus       274 an~--~~~~~~~~  284 (290)
                      ..+  +-|-||.+
T Consensus       207 GsADAlvSLWD~~  219 (313)
T KOG1407|consen  207 GSADALVSLWDVD  219 (313)
T ss_pred             ccccceeeccChh
Confidence            876  88889853

>KOG0271|consensus

Probab=97.97  E-value=6.7e-05  Score=70.31  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.++.||||+|+++++.. +.+|++|+-.+   .+.++++.        +||                       ..+.
T Consensus       369 lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t---Gk~lasfR--------GHv-----------------------~~VY  413 (480)
T KOG0271|consen  369 LVNHVSFSPDGRYIASASF-DKSVKLWDGRT---GKFLASFR--------GHV-----------------------AAVY  413 (480)
T ss_pred             heeeEEECCCccEEEEeec-ccceeeeeCCC---cchhhhhh--------hcc-----------------------ceeE
Confidence            5789999999999998876 78999999765   33333221        111                       3567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~i~~SpDGr  192 (290)
                      .++.|.|-|.|...+.                +.++.++++..   ++...          ++|+. ..++.+..||||.
T Consensus       414 qvawsaDsRLlVS~Sk----------------DsTLKvw~V~t---kKl~~----------DLpGh~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  414 QVAWSADSRLLVSGSK----------------DSTLKVWDVRT---KKLKQ----------DLPGHADEVFAVDWSPDGQ  464 (480)
T ss_pred             EEEeccCccEEEEcCC----------------CceEEEEEeee---eeecc----------cCCCCCceEEEEEecCCCc
Confidence            7999999987665433                23555566543   22222          35544 5789999999999


Q ss_pred             EEEEEeCCCCcEEEE
Q psy11412        193 YLYTSNWMHGDIRQY  207 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~  207 (290)
                      ++ +|..-+.-+.+|
T Consensus       465 rV-~sggkdkv~~lw  478 (480)
T KOG0271|consen  465 RV-ASGGKDKVLRLW  478 (480)
T ss_pred             ee-ecCCCceEEEee
Confidence            86 455345555555

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=3.6e-05  Score=69.96  Aligned_cols=64  Identities=27%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             EEEccCCCEEEEEeCC----CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        185 ILISLDDRYLYTSNWM----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~----~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      =+|||||++||++.-+    .+.|-|||..  .....++++++=|-                               +|.
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~Gi-------------------------------GpH  165 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGI-------------------------------GPH  165 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCc-------------------------------Ccc
Confidence            3699999999998632    2578899885  34556777766442                               799


Q ss_pred             eEEEccCCCEEEEEcCCCCCC
Q psy11412        261 MFQLSLDGKRIYVSSSLFSPW  281 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~~~~~~  281 (290)
                      .|.+.+||++|.+||..+-.+
T Consensus       166 ev~lm~DGrtlvvanGGIeth  186 (366)
T COG3490         166 EVTLMADGRTLVVANGGIETH  186 (366)
T ss_pred             eeEEecCCcEEEEeCCceecc
Confidence            999999999999999955443

>KOG0286|consensus

Probab=97.97  E-value=0.0005  Score=62.58  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             EecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC
Q psy11412         15 IDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE   93 (290)
Q Consensus        15 ~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~   93 (290)
                      -||+.++-.....  -=.+-+.+++++| |+++. +++.-+..-.+||++++   ...+.. .|+               
T Consensus       171 WDie~g~~~~~f~--GH~gDV~slsl~p~~~ntF-vSg~cD~~aklWD~R~~---~c~qtF-~gh---------------  228 (343)
T KOG0286|consen  171 WDIETGQQTQVFH--GHTGDVMSLSLSPSDGNTF-VSGGCDKSAKLWDVRSG---QCVQTF-EGH---------------  228 (343)
T ss_pred             EEcccceEEEEec--CCcccEEEEecCCCCCCeE-EecccccceeeeeccCc---ceeEee-ccc---------------
Confidence            3666544333220  1133577899999 77765 55556889999999763   333322 221               


Q ss_pred             CcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCc
Q psy11412         94 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGS  173 (290)
Q Consensus        94 ~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~  173 (290)
                                     .+-...+.|+|+|.-+...++               ++ .-   ...|++..++++.....    
T Consensus       229 ---------------esDINsv~ffP~G~afatGSD---------------D~-tc---RlyDlRaD~~~a~ys~~----  270 (343)
T KOG0286|consen  229 ---------------ESDINSVRFFPSGDAFATGSD---------------DA-TC---RLYDLRADQELAVYSHD----  270 (343)
T ss_pred             ---------------ccccceEEEccCCCeeeecCC---------------Cc-ee---EEEeecCCcEEeeeccC----
Confidence                           145777999999986665443               11 11   22232223333321100    


Q ss_pred             cccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412        174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       174 ~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                         ........++||.-||.||+.- .+.++.|||.-.   .++++.+ .|..                           
T Consensus       271 ---~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk---~e~vg~L-~GHe---------------------------  315 (343)
T KOG0286|consen  271 ---SIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLK---GERVGVL-AGHE---------------------------  315 (343)
T ss_pred             ---cccCCceeEEEcccccEEEeee-cCCceeEeeccc---cceEEEe-eccC---------------------------
Confidence               0113567899999999999875 788999999853   2333332 2321                           


Q ss_pred             cccCCcceEEEccCCCEEEEE
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Va  274 (290)
                         +...-+.++|||.-|...
T Consensus       316 ---NRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  316 ---NRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             ---CeeEEEEECCCCcEEEec
Confidence               256779999999877664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00027  Score=65.79  Aligned_cols=112  Identities=17%  Similarity=0.232  Sum_probs=65.4

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++|+|||||++||++....+.+..+.++.  ..+..-.......       .          .. ++..|=++++..
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~--~~g~~~~~~~~~~-------~----------~~-~~G~PDG~~vDa  222 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDP--ATGPIGGRRGFVD-------F----------DE-EPGLPDGMAVDA  222 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCc--ccCccCCcceEEE-------c----------cC-CCCCCCceEEeC
Confidence            46889999999999999987655554443321  0110000000000       0          00 123445689999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE-ccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL-SLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~-sPDG  268 (290)
                      ||..-.++.++.+.|.+|+-   . .++++.+.+...                               .|.+.+| .|++
T Consensus       223 dG~lw~~a~~~g~~v~~~~p---d-G~l~~~i~lP~~-------------------------------~~t~~~FgG~~~  267 (307)
T COG3386         223 DGNLWVAAVWGGGRVVRFNP---D-GKLLGEIKLPVK-------------------------------RPTNPAFGGPDL  267 (307)
T ss_pred             CCCEEEecccCCceEEEECC---C-CcEEEEEECCCC-------------------------------CCccceEeCCCc
Confidence            99863355544458998854   2 566776655421                               4666666 4677


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++|||++.
T Consensus       268 ~~L~iTs~  275 (307)
T COG3386         268 NTLYITSA  275 (307)
T ss_pred             CEEEEEec
Confidence            88888865

>KOG0643|consensus

Probab=97.94  E-value=0.00051  Score=61.91  Aligned_cols=155  Identities=18%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.++.+.++-+-++|.+. ..+.++++||+..   .+++.+++.+                                ..+
T Consensus        53 GavW~~Did~~s~~liTG-SAD~t~kLWDv~t---Gk~la~~k~~--------------------------------~~V   96 (327)
T KOG0643|consen   53 GAVWCCDIDWDSKHLITG-SADQTAKLWDVET---GKQLATWKTN--------------------------------SPV   96 (327)
T ss_pred             ceEEEEEecCCcceeeec-cccceeEEEEcCC---CcEEEEeecC--------------------------------Cee
Confidence            367788999999988654 4688999999965   5666665554                                567


Q ss_pred             eEEEEccCCCEEEEEcC--CCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeEEEEcc
Q psy11412        113 QMFQLSLDGKRIYVSSS--LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTDILISL  189 (290)
Q Consensus       113 r~vafsPdG~~lYv~ne--l~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~i~~Sp  189 (290)
                      +.+-|+++|.++.++.+  |+.             ...+...++.+... .....-|..     .++.+ ..+..+..+|
T Consensus        97 k~~~F~~~gn~~l~~tD~~mg~-------------~~~v~~fdi~~~~~-~~~s~ep~~-----kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   97 KRVDFSFGGNLILASTDKQMGY-------------TCFVSVFDIRDDSS-DIDSEEPYL-----KIPTPDSKITSALWGP  157 (327)
T ss_pred             EEEeeccCCcEEEEEehhhcCc-------------ceEEEEEEccCChh-hhcccCceE-----EecCCccceeeeeecc
Confidence            88999999988776654  211             11222222221000 000000000     11111 3456678999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      =|+++.+.. .+++|+.||+...  ...+..   ...                   |         ...-++|.||||..
T Consensus       158 l~~~ii~Gh-e~G~is~~da~~g--~~~v~s---~~~-------------------h---------~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  158 LGETIIAGH-EDGSISIYDARTG--KELVDS---DEE-------------------H---------SSKINDLQFSRDRT  203 (327)
T ss_pred             cCCEEEEec-CCCcEEEEEcccC--ceeeec---hhh-------------------h---------ccccccccccCCcc
Confidence            999987666 7899999998541  123321   110                   0         11467899999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +...++.
T Consensus       204 ~FiT~s~  210 (327)
T KOG0643|consen  204 YFITGSK  210 (327)
T ss_pred             eEEeccc
Confidence            8888765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=97.91  E-value=5.3e-05  Score=48.58  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeec
Q psy11412         42 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG   77 (290)
Q Consensus        42 pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g   77 (290)
                      |||++||++|.++++|.++|..+   .+.+..+.+|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECC
Confidence            79999999999999999999743   4556555553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.89  E-value=0.0005  Score=65.35  Aligned_cols=18  Identities=17%  Similarity=0.464  Sum_probs=15.4

Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      ..|++|+|.++|  |||++.
T Consensus        72 ~~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CCccceeEecCC--EEEeCC
Confidence            478999999999  998765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0282|consensus

Probab=97.88  E-value=0.00013  Score=69.98  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=85.1

Q ss_pred             EEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC
Q psy11412         14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE   93 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~   93 (290)
                      -.||...+|+...  +.--+.+..|.|-++|++.+++. .+.+|++|+...+...+.+....+.                
T Consensus       326 ~wDiRs~kvvqeY--d~hLg~i~~i~F~~~g~rFissS-Ddks~riWe~~~~v~ik~i~~~~~h----------------  386 (503)
T KOG0282|consen  326 QWDIRSGKVVQEY--DRHLGAILDITFVDEGRRFISSS-DDKSVRIWENRIPVPIKNIADPEMH----------------  386 (503)
T ss_pred             EEeccchHHHHHH--HhhhhheeeeEEccCCceEeeec-cCccEEEEEcCCCccchhhcchhhc----------------
Confidence            3466665554432  12233577899999999987776 4789999998764333333211110                


Q ss_pred             CcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCc
Q psy11412         94 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGS  173 (290)
Q Consensus        94 ~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~  173 (290)
                                      +.| .++++|+|+++..=+ +.+               .+.+..+..     ..+......++|
T Consensus       387 ----------------smP-~~~~~P~~~~~~aQs-~dN---------------~i~ifs~~~-----~~r~nkkK~feG  428 (503)
T KOG0282|consen  387 ----------------TMP-CLTLHPNGKWFAAQS-MDN---------------YIAIFSTVP-----PFRLNKKKRFEG  428 (503)
T ss_pred             ----------------cCc-ceecCCCCCeehhhc-cCc---------------eEEEEeccc-----ccccCHhhhhcc
Confidence                            233 389999999877522 221               222122111     111111122233


Q ss_pred             cccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       174 ~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                      ..  ..+.+-.+.|||||++|...+ +++.+.+||-..   -+++..+.+.
T Consensus       429 h~--vaGys~~v~fSpDG~~l~SGd-sdG~v~~wdwkt---~kl~~~lkah  473 (503)
T KOG0282|consen  429 HS--VAGYSCQVDFSPDGRTLCSGD-SDGKVNFWDWKT---TKLVSKLKAH  473 (503)
T ss_pred             ee--ccCceeeEEEcCCCCeEEeec-CCccEEEeechh---hhhhhccccC
Confidence            11  124567799999999998888 899999999742   2344444443

>KOG0286|consensus

Probab=97.86  E-value=0.00064  Score=61.90  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=91.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      +.....|-+|+..|  +..++.+..+||++.+   +.+.. ..|+                              .+-.-
T Consensus       147 ylScC~f~dD~~il--T~SGD~TCalWDie~g---~~~~~-f~GH------------------------------~gDV~  190 (343)
T KOG0286|consen  147 YLSCCRFLDDNHIL--TGSGDMTCALWDIETG---QQTQV-FHGH------------------------------TGDVM  190 (343)
T ss_pred             eeEEEEEcCCCceE--ecCCCceEEEEEcccc---eEEEE-ecCC------------------------------cccEE
Confidence            55567787777665  3446889999999762   33322 2232                              14567


Q ss_pred             EEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        114 MFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .+.++| +++++. +..-              +. ...+||+.+   ..-.++     +.+    .......|.|-|+|-
T Consensus       191 slsl~p~~~ntFv-Sg~c--------------D~-~aklWD~R~---~~c~qt-----F~g----hesDINsv~ffP~G~  242 (343)
T KOG0286|consen  191 SLSLSPSDGNTFV-SGGC--------------DK-SAKLWDVRS---GQCVQT-----FEG----HESDINSVRFFPSGD  242 (343)
T ss_pred             EEecCCCCCCeEE-eccc--------------cc-ceeeeeccC---cceeEe-----ecc----cccccceEEEccCCC
Confidence            799999 777655 4331              11 222344432   122222     111    124567899999997


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      - +++.-.+++.++||+..   -..++.+.-..                           +  -.+..+++||..||+||
T Consensus       243 a-fatGSDD~tcRlyDlRa---D~~~a~ys~~~---------------------------~--~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  243 A-FATGSDDATCRLYDLRA---DQELAVYSHDS---------------------------I--ICGITSVAFSKSGRLLF  289 (343)
T ss_pred             e-eeecCCCceeEEEeecC---CcEEeeeccCc---------------------------c--cCCceeEEEcccccEEE
Confidence            6 45555889999999942   12333332111                           0  01468899999999999


Q ss_pred             EEcC--CCCCCCc
Q psy11412        273 VSSS--LFSPWDK  283 (290)
Q Consensus       273 Van~--~~~~~~~  283 (290)
                      +.-.  .-..||-
T Consensus       290 agy~d~~c~vWDt  302 (343)
T KOG0286|consen  290 AGYDDFTCNVWDT  302 (343)
T ss_pred             eeecCCceeEeec
Confidence            9633  5567774

>KOG0319|consensus

Probab=97.85  E-value=0.0003  Score=70.48  Aligned_cols=183  Identities=16%  Similarity=0.207  Sum_probs=106.7

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      +++|++|+.||.++.  +.|-+.|+.+... . +   +.+. .  .               .         -.....+++
T Consensus        25 ~~~s~nG~~L~t~~~--d~Vi~idv~t~~~-~-l---~s~~-~--e---------------d---------~d~ita~~l   70 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACG--DRVIIIDVATGSI-A-L---PSGS-N--E---------------D---------EDEITALAL   70 (775)
T ss_pred             eeECCCCCEEEEecC--ceEEEEEccCCce-e-c---ccCC-c--c---------------c---------hhhhheeee
Confidence            899999999998874  5788888876321 1 1   1110 0  0               0         023445899


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      +||+++||.+..                +..+.+++..   ....++        .|..-......-++|+|-|..|.+.
T Consensus        71 ~~d~~~L~~a~r----------------s~llrv~~L~---tgk~ir--------swKa~He~Pvi~ma~~~~g~LlAtg  123 (775)
T KOG0319|consen   71 TPDEEVLVTASR----------------SQLLRVWSLP---TGKLIR--------SWKAIHEAPVITMAFDPTGTLLATG  123 (775)
T ss_pred             cCCccEEEEeec----------------cceEEEEEcc---cchHhH--------hHhhccCCCeEEEEEcCCCceEEec
Confidence            999999998754                2122222221   112222        2211112345679999999666555


Q ss_pred             eCCCCcEEEEEecCC-------CCceEeeEEeeCcee--------cCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412        198 NWMHGDIRQYDIRDT-------AHPVLVGQIFLGGKI--------QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  262 (290)
Q Consensus       198 ~r~~~~V~v~Dv~d~-------~~~~~v~~i~~Gg~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  262 (290)
                      + .++.|.|||+...       +.+-.+-.+.-+...        .+|++|.||+..+..  +--..+...  -+...++
T Consensus       124 g-aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~--tcl~~~~~H--~S~vtsL  198 (775)
T KOG0319|consen  124 G-ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR--TCLHTMILH--KSAVTSL  198 (775)
T ss_pred             c-ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc--hHHHHHHhh--hhheeee
Confidence            5 7899999999641       111112112111111        578889999976432  100011111  1368999


Q ss_pred             EEccCCCEEEEEcC--CCCCCCcccC
Q psy11412        263 QLSLDGKRIYVSSS--LFSPWDKEIY  286 (290)
Q Consensus       263 a~sPDG~~L~Van~--~~~~~~~~~~  286 (290)
                      +|++|+..++..++  ....||-+=|
T Consensus       199 ~~~~d~~~~ls~~RDkvi~vwd~~~~  224 (775)
T KOG0319|consen  199 AFSEDSLELLSVGRDKVIIVWDLVQY  224 (775)
T ss_pred             eeccCCceEEEeccCcEEEEeehhhh
Confidence            99999999998877  6777775444

>KOG0306|consensus

Probab=97.83  E-value=0.00061  Score=68.64  Aligned_cols=185  Identities=17%  Similarity=0.212  Sum_probs=104.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc--------------cCCCceEEecCCCC---c
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI--------------QSDSGVTVIDDPEL---D   95 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~--------------~~~~~~~v~~~~~~---~   95 (290)
                      .-+.+++||.|...++++.  +++|.+|+.....   .+.++..+..+              ..+|.+.+++-.+-   +
T Consensus       374 ~dVRsl~vS~d~~~~~Sga--~~SikiWn~~t~k---ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  374 SDVRSLCVSSDSILLASGA--GESIKIWNRDTLK---CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             hheeEEEeecCceeeeecC--CCcEEEEEccCcc---eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence            4588999998888777655  3689999998733   23222221111              12344555543221   1


Q ss_pred             C-CCCcceeeccccCCCceEEEEccCCCEEEEEcCCC--CCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         96 K-QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF--SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        96 ~-~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~--~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                      + ..|.         +....|+.+||++.+..++...  .-||......  ..|..-.   +....+.++          
T Consensus       449 ti~AHd---------gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k---~lsl~~~rt----------  504 (888)
T KOG0306|consen  449 TIRAHD---------GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKK---VLSLKHTRT----------  504 (888)
T ss_pred             hhhccc---------cceeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCcccce---eeeeccceE----------
Confidence            1 1221         3567799999999888765411  1121110000  0010000   000000000          


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee-CceecCCCceEEecCCCCCCCCCcceee
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-GGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~-Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                         +.-......+.+|||||+|.++- .+++|.||-+++   .+.  .++. |.++                        
T Consensus       505 ---Lel~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDt---lKF--flsLYGHkL------------------------  551 (888)
T KOG0306|consen  505 ---LELEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDT---LKF--FLSLYGHKL------------------------  551 (888)
T ss_pred             ---EeccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecc---eee--eeeeccccc------------------------
Confidence               11124567799999999999999 899999999853   332  1111 2211                        


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC--CCCCCCccc
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDKEI  285 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~~~  285 (290)
                            -+..|.+|||++.+..+++  ..+-|.-.|
T Consensus       552 ------PV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  552 ------PVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             ------ceeEEeccCCcCeEEeccCCCceEEecccc
Confidence                  1588999999999998876  667776554

>KOG0640|consensus

Probab=97.83  E-value=0.00056  Score=62.83  Aligned_cols=198  Identities=15%  Similarity=0.179  Sum_probs=106.9

Q ss_pred             ceE-EEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeecccccCCCceEEecCCCCcCCCCccee--eccccC
Q psy11412         34 MVT-DILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII--KGRRFT  109 (290)
Q Consensus        34 ~p~-~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~g  109 (290)
                      .|+ ..+|||||..+++.. .+-+|.++|++. .+.- ...++-.|+.                -+.+|+++  .++  .
T Consensus       113 ~~cR~aafs~DG~lvATGs-aD~SIKildvermlaks-~~~em~~~~~----------------qa~hPvIRTlYDH--~  172 (430)
T KOG0640|consen  113 SPCRAAAFSPDGSLVATGS-ADASIKILDVERMLAKS-KPKEMISGDT----------------QARHPVIRTLYDH--V  172 (430)
T ss_pred             cceeeeeeCCCCcEEEccC-CcceEEEeehhhhhhhc-chhhhccCCc----------------ccCCceEeehhhc--c
Confidence            444 577999999887654 577999999852 0000 0111111110                01112211  111  1


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .....+.|||....|...+.                ++.+..+|......++-.+.          +.+...+..|.|+|
T Consensus       173 devn~l~FHPre~ILiS~sr----------------D~tvKlFDfsK~saKrA~K~----------~qd~~~vrsiSfHP  226 (430)
T KOG0640|consen  173 DEVNDLDFHPRETILISGSR----------------DNTVKLFDFSKTSAKRAFKV----------FQDTEPVRSISFHP  226 (430)
T ss_pred             CcccceeecchhheEEeccC----------------CCeEEEEecccHHHHHHHHH----------hhccceeeeEeecC
Confidence            35667999999998886543                22333233222111111111          11123467899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC--------CCCce--EeeEE--eeCcee----cCCCceEEecCCCCCCCCCcceeecc
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD--------TAHPV--LVGQI--FLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d--------~~~~~--~v~~i--~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                      -|.||.++. .+..+++|||..        |....  .|..+  +..+++    +.||.+++||.--..   -...+...
T Consensus       227 sGefllvgT-dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~t~~~A  302 (430)
T KOG0640|consen  227 SGEFLLVGT-DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVRTIGNA  302 (430)
T ss_pred             CCceEEEec-CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHHHHHhh
Confidence            999999998 789999999953        11111  11111  111222    677888888743211   00011222


Q ss_pred             cccCCcceEEEccCCCEEEEEcC--CCCCC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS--LFSPW  281 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~--~~~~~  281 (290)
                      +-|+..-+..|+.+||+++.+..  +.+-|
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLW  332 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeee
Confidence            33445788999999999998754  44444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.81  E-value=0.00017  Score=67.46  Aligned_cols=89  Identities=22%  Similarity=0.327  Sum_probs=56.3

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCC---------CCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWM---------HGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~---------~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      .+.-|+|-.++++.+.+   ..+ +-.++++||||+++|+++..         .+.|.+||..+   +....+|.+... 
T Consensus        17 ~rv~viD~d~~k~lGmi---~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~EI~iP~k-   88 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMI---DTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGEIEIPPK-   88 (342)
T ss_dssp             EEEEEEETTTTEEEEEE---EEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEEEEETTS-
T ss_pred             ceEEEEECCCCcEEEEe---ecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc---CcccceEecCCc-
Confidence            35667888888876654   333 34457899999999987432         35699999754   666666655310 


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne  129 (290)
                         .+.                    -.+..++.+++|.|||++||-|-
T Consensus        89 ---~R~--------------------~~~~~~~~~~ls~dgk~~~V~N~  114 (342)
T PF06433_consen   89 ---PRA--------------------QVVPYKNMFALSADGKFLYVQNF  114 (342)
T ss_dssp             ----B----------------------BS--GGGEEE-TTSSEEEEEEE
T ss_pred             ---chh--------------------eecccccceEEccCCcEEEEEcc
Confidence               000                    01246778999999999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0278|consensus

Probab=97.80  E-value=0.00027  Score=63.17  Aligned_cols=130  Identities=16%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      +.-|+..++.+.++   ..+..+.++-+|+||++|-.+ + +++|..||...   ..++....+.               
T Consensus       168 RLWD~rTgt~v~sL---~~~s~VtSlEvs~dG~ilTia-~-gssV~Fwdaks---f~~lKs~k~P---------------  224 (334)
T KOG0278|consen  168 RLWDHRTGTEVQSL---EFNSPVTSLEVSQDGRILTIA-Y-GSSVKFWDAKS---FGLLKSYKMP---------------  224 (334)
T ss_pred             EEEEeccCcEEEEE---ecCCCCcceeeccCCCEEEEe-c-CceeEEecccc---ccceeeccCc---------------
Confidence            44566677766666   667788899999999998655 3 46899998754   3344433221               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                       .....-.++|+...+.+.+|+     .           .+...|-.+   ...+...    ..
T Consensus       225 -----------------~nV~SASL~P~k~~fVaGged-----~-----------~~~kfDy~T---geEi~~~----nk  264 (334)
T KOG0278|consen  225 -----------------CNVESASLHPKKEFFVAGGED-----F-----------KVYKFDYNT---GEEIGSY----NK  264 (334)
T ss_pred             -----------------cccccccccCCCceEEecCcc-----e-----------EEEEEeccC---Cceeeec----cc
Confidence                             344556789998544444441     1           111111110   1111100    00


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +    ..+.+..+.|||||. ||++.-.+++|++|...
T Consensus       265 g----h~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  265 G----HFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT  297 (334)
T ss_pred             C----CCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence            1    224567799999996 69998889999999884

>KOG2394|consensus

Probab=97.77  E-value=0.00045  Score=67.25  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC---CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA---HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~---~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .+..+..-|.+..++++...+|.+.+||..-..   .+.- .-++.+..       +-+.....-....|.+..... .+
T Consensus       221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~-~~~k~~~~-------f~i~t~ksk~~rNPv~~w~~~-~g  291 (636)
T KOG2394|consen  221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY-QALKDGDQ-------FAILTSKSKKTRNPVARWHIG-EG  291 (636)
T ss_pred             ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc-cccCCCCe-------eEEeeeeccccCCccceeEec-cc
Confidence            566677667777777676678999999864211   1110 00011100       001000000011222211111 14


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+..++|||||++|+++++               || .+-++   +|.....+.....- +        ++-.-+..|||
T Consensus       292 ~in~f~FS~DG~~LA~VSq---------------DG-fLRvF---~fdt~eLlg~mkSY-F--------GGLLCvcWSPD  343 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQ---------------DG-FLRIF---DFDTQELLGVMKSY-F--------GGLLCVCWSPD  343 (636)
T ss_pred             cccceeEcCCCceEEEEec---------------Cc-eEEEe---eccHHHHHHHHHhh-c--------cceEEEEEcCC
Confidence            7889999999999999987               23 33222   22111111100000 0        12334889999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ  220 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~  220 (290)
                      ||++.+.. .|+-|.||.+.+   .+++++
T Consensus       344 GKyIvtGG-EDDLVtVwSf~e---rRVVAR  369 (636)
T KOG2394|consen  344 GKYIVTGG-EDDLVTVWSFEE---RRVVAR  369 (636)
T ss_pred             ccEEEecC-CcceEEEEEecc---ceEEEe
Confidence            99998888 688999999964   455553

>KOG0275|consensus

Probab=97.76  E-value=0.00012  Score=67.44  Aligned_cols=176  Identities=16%  Similarity=0.178  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..+.||.|...|++.. .+|.|.+|.+..+   ..+....-.+                              ..|
T Consensus       263 d~aVlci~FSRDsEMlAsGs-qDGkIKvWri~tG---~ClRrFdrAH------------------------------tkG  308 (508)
T KOG0275|consen  263 DDAVLCISFSRDSEMLASGS-QDGKIKVWRIETG---QCLRRFDRAH------------------------------TKG  308 (508)
T ss_pred             ccceEEEeecccHHHhhccC-cCCcEEEEEEecc---hHHHHhhhhh------------------------------ccC
Confidence            44677899999999997554 5899999999763   2322211110                              157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...+.||.|+..+..++-     |.           ++ .+.-.  ...+.+.     ++.|    ......+..|++||
T Consensus       309 vt~l~FSrD~SqiLS~sf-----D~-----------tv-RiHGl--KSGK~LK-----EfrG----HsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  309 VTCLSFSRDNSQILSASF-----DQ-----------TV-RIHGL--KSGKCLK-----EFRG----HSSYVNEATFTDDG  360 (508)
T ss_pred             eeEEEEccCcchhhcccc-----cc-----------eE-EEecc--ccchhHH-----HhcC----ccccccceEEcCCC
Confidence            888999999987765432     10           10 01000  0011111     1111    12467789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCce----------------e---cCCCceEEecCCCCCCCCCcceeec
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK----------------I---QSDSGVTVIDDPELDKQPDPVIIKG  252 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~----------------~---~~~~~v~~~~~~~~~~~~~~~~~~~  252 (290)
                      .++..+. .+++|.||+....+   -+.+...++.                +   .+.++|.++...+.-+.   ..-.|
T Consensus       361 ~~iisaS-sDgtvkvW~~Ktte---C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr---sfsSG  433 (508)
T KOG0275|consen  361 HHIISAS-SDGTVKVWHGKTTE---CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR---SFSSG  433 (508)
T ss_pred             CeEEEec-CCccEEEecCcchh---hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe---eeccC
Confidence            9988776 79999999874321   1111111111                0   56677777776553221   12244


Q ss_pred             ccccCCcceEEEccCCCEEEEEcC
Q psy11412        253 RRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       253 ~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      .|-+|.=-...+||.|.|+|+..+
T Consensus       434 kREgGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             CccCCceEEEEecCCCcEEEEEcc
Confidence            454555567889999999999866

>KOG0273|consensus

Probab=97.74  E-value=0.00071  Score=64.93  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ..+++++||||||+|...+ .++.|.+|++..   .+++...--+                                ++.
T Consensus       453 ~pVysvafS~~g~ylAsGs-~dg~V~iws~~~---~~l~~s~~~~--------------------------------~~I  496 (524)
T KOG0273|consen  453 EPVYSVAFSPNGRYLASGS-LDGCVHIWSTKT---GKLVKSYQGT--------------------------------GGI  496 (524)
T ss_pred             CceEEEEecCCCcEEEecC-CCCeeEeccccc---hheeEeecCC--------------------------------CeE
Confidence            4589999999999998888 688999998742   3344432111                                257


Q ss_pred             ceEEEccCCCEEEEEcCC
Q psy11412        260 QMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~~  277 (290)
                      ..+.++-+|..|.++-+.
T Consensus       497 fel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  497 FELCWNAAGDKLGACASD  514 (524)
T ss_pred             EEEEEcCCCCEEEEEecC
Confidence            889999999998887553

>KOG0267|consensus

Probab=97.74  E-value=0.0001  Score=73.66  Aligned_cols=174  Identities=18%  Similarity=0.216  Sum_probs=98.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...+|.|+++.+.|+. +..+|+|.+||++.+   +.+..+ +|+.                              ..+-
T Consensus        72 pIeSl~f~~~E~Llaa-gsasgtiK~wDleeA---k~vrtL-tgh~------------------------------~~~~  116 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAA-GSASGTIKVWDLEEA---KIVRTL-TGHL------------------------------LNIT  116 (825)
T ss_pred             cceeeecCcchhhhcc-cccCCceeeeehhhh---hhhhhh-hccc------------------------------cCcc
Confidence            3457999999888764 456899999999752   222111 2211                              2344


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+.|||-|.+.. ...+              ++ .+.+||...   .+....     ..+    ......-++|+||||+
T Consensus       117 sv~f~P~~~~~a-~gSt--------------dt-d~~iwD~Rk---~Gc~~~-----~~s----~~~vv~~l~lsP~Gr~  168 (825)
T KOG0267|consen  117 SVDFHPYGEFFA-SGST--------------DT-DLKIWDIRK---KGCSHT-----YKS----HTRVVDVLRLSPDGRW  168 (825)
T ss_pred             eeeeccceEEec-cccc--------------cc-cceehhhhc---cCceee-----ecC----CcceeEEEeecCCCce
Confidence            588999998652 1111              11 122333311   000100     000    1123445799999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEe--------e-Cce-------ecCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIF--------L-GGK-------IQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  257 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~--------~-Gg~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (290)
                      +...+ .+++|.+||...   .+++.+++        . ++.       -+.|.+|.+||..+-.     ..-.+-....
T Consensus       169 v~~g~-ed~tvki~d~~a---gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-----~I~s~~~~~~  239 (825)
T KOG0267|consen  169 VASGG-EDNTVKIWDLTA---GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-----VISSGKPETD  239 (825)
T ss_pred             eeccC-Ccceeeeecccc---cccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-----EeeccCCccC
Confidence            87776 479999999842   22222221        0 100       0467789999876411     1111222235


Q ss_pred             CcceEEEccCCCEEEEEcC-CCC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS-LFS  279 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~-~~~  279 (290)
                      +++..+|+|||+.++...+ .++
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             CceeeeecCCceeeecCchhhhh
Confidence            7999999999999998766 444

>KOG0302|consensus

Probab=97.66  E-value=0.00059  Score=63.97  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ++..+..||..+.++.+|.-+|+|++||++..-.-..+.. +..                               ++-+.
T Consensus       259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh-------------------------------~sDVN  306 (440)
T KOG0302|consen  259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH-------------------------------NSDVN  306 (440)
T ss_pred             chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc-------------------------------CCcee
Confidence            5678999999999999999999999999975311111111 111                               14566


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      -|.++.+-..|+ +..               +.+.+.++|+..+...+++++...         .....+.|.++|....
T Consensus       307 VISWnr~~~lLa-sG~---------------DdGt~~iwDLR~~~~~~pVA~fk~---------Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  307 VISWNRREPLLA-SGG---------------DDGTLSIWDLRQFKSGQPVATFKY---------HKAPITSIEWHPHEDS  361 (440)
T ss_pred             eEEccCCcceee-ecC---------------CCceEEEEEhhhccCCCcceeEEe---------ccCCeeEEEeccccCc
Confidence            677887777333 222               344666666655433333332110         1134678999996555


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      .+++.-.+++|.+||++
T Consensus       362 ~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLS  378 (440)
T ss_pred             eEEeccCCCcEEEEEee
Confidence            44444379999999996

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0019  Score=58.90  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             CCCceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCC-EEEEEeCCCCe-EEEEEcCCCCCceeeeEEeecccccC
Q psy11412          5 SDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDR-YLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr-~Lyva~~~~g~-V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      .||.|.+  ++-.+++|++..+   .|++.-|+|+++|--+ .++.+-. -|+ -.+||..+...+..+....       
T Consensus        45 ~dgs~g~--a~~~eaGk~v~~~---~lpaR~Hgi~~~p~~~ravafARr-PGtf~~vfD~~~~~~pv~~~s~~-------  111 (366)
T COG3490          45 RDGSFGA--ATLSEAGKIVFAT---ALPARGHGIAFHPALPRAVAFARR-PGTFAMVFDPNGAQEPVTLVSQE-------  111 (366)
T ss_pred             cCCceeE--EEEccCCceeeee---ecccccCCeecCCCCcceEEEEec-CCceEEEECCCCCcCcEEEeccc-------
Confidence            3455544  3445677777766   7777778888888743 4444433 333 4556665443333322100       


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE  162 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~  162 (290)
                                            ++   ..=-|-+|||||++||.+...   .|        ..-+.+   -+-++.  ..
T Consensus       112 ----------------------~R---HfyGHGvfs~dG~~LYATEnd---fd--------~~rGVi---GvYd~r--~~  150 (366)
T COG3490         112 ----------------------GR---HFYGHGVFSPDGRLLYATEND---FD--------PNRGVI---GVYDAR--EG  150 (366)
T ss_pred             ----------------------Cc---eeecccccCCCCcEEEeecCC---CC--------CCCceE---EEEecc--cc
Confidence                                  00   111246899999999976541   11        011233   333321  11


Q ss_pred             ccccCccccCccccCC-CCceeEEEEccCCCEEEEEe
Q psy11412        163 MRSMPLSSLGSWKYPA-RSMVTDILISLDDRYLYTSN  198 (290)
Q Consensus       163 i~~~p~~~~~~~~~~~-~~~~~~i~~SpDGr~Lyvs~  198 (290)
                      .+.     +.  .++. +-.|.++.+.+|||.|.++|
T Consensus       151 fqr-----vg--E~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         151 FQR-----VG--EFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cce-----ec--ccccCCcCcceeEEecCCcEEEEeC
Confidence            110     11  1222 23688999999999999998

>KOG0275|consensus

Probab=97.61  E-value=0.0012  Score=60.88  Aligned_cols=120  Identities=10%  Similarity=0.202  Sum_probs=72.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+++++.|++||.++.++. .+|+|.||+...   .+.+.+.+..+.--+-.++..                 .  -..|
T Consensus       349 Syvn~a~ft~dG~~iisaS-sDgtvkvW~~Kt---teC~~Tfk~~~~d~~vnsv~~-----------------~--PKnp  405 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISAS-SDGTVKVWHGKT---TECLSTFKPLGTDYPVNSVIL-----------------L--PKNP  405 (508)
T ss_pred             ccccceEEcCCCCeEEEec-CCccEEEecCcc---hhhhhhccCCCCcccceeEEE-----------------c--CCCC
Confidence            3778899999999998776 589999999754   344444433321000001100                 0  1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .|+..-....++|+.|-               .| .             .+++...+..++     +... ...+||-|.
T Consensus       406 eh~iVCNrsntv~imn~---------------qG-Q-------------vVrsfsSGkREg-----GdFi-~~~lSpkGe  450 (508)
T KOG0275|consen  406 EHFIVCNRSNTVYIMNM---------------QG-Q-------------VVRSFSSGKREG-----GDFI-NAILSPKGE  450 (508)
T ss_pred             ceEEEEcCCCeEEEEec---------------cc-e-------------EEeeeccCCccC-----CceE-EEEecCCCc
Confidence            78777777778888764               12 1             122222222222     2233 356999999


Q ss_pred             EEEEEeCCCCcEEEEEecC
Q psy11412        193 YLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ++|... .++.++.|.+..
T Consensus       451 wiYcig-ED~vlYCF~~~s  468 (508)
T KOG0275|consen  451 WIYCIG-EDGVLYCFSVLS  468 (508)
T ss_pred             EEEEEc-cCcEEEEEEeec
Confidence            999998 678888888753

>KOG4378|consensus

Probab=97.60  E-value=0.0023  Score=61.98  Aligned_cols=176  Identities=17%  Similarity=0.142  Sum_probs=113.3

Q ss_pred             ecCCCceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412          3 RQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      --+.|+=+-.++-|+.++-+...+ .+.- ..+..+...-..-||+.... +|.|.+..+.....-   ..+        
T Consensus        94 ~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~-stvt~v~YN~~DeyiAsvs~-gGdiiih~~~t~~~t---t~f--------  159 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAKLIHRFL-KDHQ-STVTYVDYNNTDEYIASVSD-GGDIIIHGTKTKQKT---TTF--------  159 (673)
T ss_pred             eeccCcCceeeehhhHHHHHhhhc-cCCc-ceeEEEEecCCcceeEEecc-CCcEEEEecccCccc---cce--------
Confidence            335566667777788766665555 2222 46778888888888876654 677888877542211   111        


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE  162 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~  162 (290)
                                            +...|...|++-|||..|+|.++..               +.+.+..||+..   ...
T Consensus       160 ----------------------~~~sgqsvRll~ys~skr~lL~~as---------------d~G~VtlwDv~g---~sp  199 (673)
T KOG4378|consen  160 ----------------------TIDSGQSVRLLRYSPSKRFLLSIAS---------------DKGAVTLWDVQG---MSP  199 (673)
T ss_pred             ----------------------ecCCCCeEEEeecccccceeeEeec---------------cCCeEEEEeccC---CCc
Confidence                                  1112456799999999999998765               344566666643   111


Q ss_pred             ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412        163 MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       163 i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      +.        .|.-......++|+|||-...|+|+.-.+-.|.+||+..   .+...++--                   
T Consensus       200 ~~--------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s---~~s~~~l~y-------------------  249 (673)
T KOG4378|consen  200 IF--------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS---QASTDRLTY-------------------  249 (673)
T ss_pred             cc--------chhhhccCCcCcceecCCccceEEEecccceEEEeeccc---ccccceeee-------------------
Confidence            11        221111234678999999999999997889999999853   222222211                   


Q ss_pred             CCCCcceeecccccCCc-ceEEEccCCCEEEEEcC
Q psy11412        243 KQPDPVIIKGRRFTGSS-QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P-~~~a~sPDG~~L~Van~  276 (290)
                                    .+| ..++|+++|.+|.+.|.
T Consensus       250 --------------~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  250 --------------SHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             --------------cCCcceeeecCCceEEEeecC
Confidence                          134 56999999999999876

>KOG1539|consensus

Probab=97.59  E-value=0.00027  Score=71.77  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=59.3

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      .|+|+-+.+|+...  .-...-..+++||||||+|.+++. +++|++||+..   ..++..+.+.               
T Consensus       559 ~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt---~~lID~~~vd---------------  617 (910)
T KOG1539|consen  559 RVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT---GTLIDGLLVD---------------  617 (910)
T ss_pred             EEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC---cceeeeEecC---------------
Confidence            56777777766543  114557789999999999999986 78999999954   3455443332               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  130 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel  130 (290)
                                       ..+-.+.|||+|.+|+++...
T Consensus       618 -----------------~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  618 -----------------SPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             -----------------CcceeeEECCCCCEEEEEEec
Confidence                             345669999999999998774

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.54  E-value=0.0051  Score=55.57  Aligned_cols=172  Identities=12%  Similarity=0.068  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-ee--eeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VL--VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~--~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      -+.+|++.-+|+++.+. .-.+++.++++.+.+.. ..  ...+.++-.                          .....
T Consensus        66 D~EgI~y~g~~~~vl~~-Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------~~~N~  118 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSE-ERDQRLYIFTIDDDTTSLDRADVQKISLGFP--------------------------NKGNK  118 (248)
T ss_dssp             SEEEEEE-STTEEEEEE-TTTTEEEEEEE----TT--EEEEEEEE---S-----------------------------SS
T ss_pred             CceeEEEECCCEEEEEE-cCCCcEEEEEEeccccccchhhceEEecccc--------------------------cCCCc
Confidence            68899998888777644 45789999999543221 11  222333210                          01135


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      |-.+++++|.+++||++.|-... ..+...- ...+..+   ...+   .....   ..   .+   .-..+++++++|.
T Consensus       119 G~EGla~D~~~~~L~v~kE~~P~-~l~~~~~-~~~~~~~---~~~~---~~~~~---~~---~~---~~~d~S~l~~~p~  181 (248)
T PF06977_consen  119 GFEGLAYDPKTNRLFVAKERKPK-RLYEVNG-FPGGFDL---FVSD---DQDLD---DD---KL---FVRDLSGLSYDPR  181 (248)
T ss_dssp             --EEEEEETTTTEEEEEEESSSE-EEEEEES-TT-SS-----EEEE----HHHH----H---T-----SS---EEEEETT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCCh-hhEEEcc-ccCccce---eecc---ccccc---cc---cc---eeccccceEEcCC
Confidence            78999999999999999873210 0000000 0000000   0000   00000   00   00   0135788999998


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      -..||+-.-.+..|..+|..    .+.+..++.-...           .++        .+..   .+|.+|+|+++| .
T Consensus       182 t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~-----------~gl--------~~~~---~QpEGIa~d~~G-~  234 (248)
T PF06977_consen  182 TGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGF-----------HGL--------SKDI---PQPEGIAFDPDG-N  234 (248)
T ss_dssp             TTEEEEEETTTTEEEEE-TT------EEEEEE-STTG-----------GG---------SS------SEEEEEE-TT---
T ss_pred             CCeEEEEECCCCeEEEECCC----CCEEEEEEeCCcc-----------cCc--------cccc---CCccEEEECCCC-C
Confidence            77777655467778777632    3444444332100           000        0001   169999999999 7


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||++|+
T Consensus       235 LYIvsE  240 (248)
T PF06977_consen  235 LYIVSE  240 (248)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            888887

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2106|consensus

Probab=97.52  E-value=0.0029  Score=61.40  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ..+-+++||||.+|+++. -++.|++|.|+.-
T Consensus       449 ~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGS-HDNHIYIYRVSAN  479 (626)
T ss_pred             ceEEEEEcCCCCEEEEec-CCCeEEEEEECCC
Confidence            456699999999999998 6899999999753

>KOG0316|consensus

Probab=97.52  E-value=0.0057  Score=54.46  Aligned_cols=174  Identities=17%  Similarity=0.172  Sum_probs=101.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      -+.+..+-+.-||.|..+++ .+.+|++|+.-   +..++.+...+                               |..
T Consensus        17 qgaV~avryN~dGnY~ltcG-sdrtvrLWNp~---rg~liktYsgh-------------------------------G~E   61 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCG-SDRTVRLWNPL---RGALIKTYSGH-------------------------------GHE   61 (307)
T ss_pred             ccceEEEEEccCCCEEEEcC-CCceEEeeccc---ccceeeeecCC-------------------------------Cce
Confidence            34577889999999998665 58899999853   34455433221                               234


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++.+-|...+.....                +..+..||+.   +.+.++.     ..+    .......|+|..+.
T Consensus        62 VlD~~~s~Dnskf~s~Gg----------------Dk~v~vwDV~---TGkv~Rr-----~rg----H~aqVNtV~fNees  113 (307)
T KOG0316|consen   62 VLDAALSSDNSKFASCGG----------------DKAVQVWDVN---TGKVDRR-----FRG----HLAQVNTVRFNEES  113 (307)
T ss_pred             eeeccccccccccccCCC----------------CceEEEEEcc---cCeeeee-----ccc----ccceeeEEEecCcc
Confidence            556677777665554322                1233334433   2333331     111    22567789999998


Q ss_pred             CEEEEEeCCCCcEEEEEecCC-CCceE--------eeEEeeCc-ee---cCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDT-AHPVL--------VGQIFLGG-KI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~-~~~~~--------v~~i~~Gg-~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      ..++.+. .+.++.+||...- ..|..        +-.|.+.+ .+   +-|++|+.+|...-...++       -+|.-
T Consensus       114 SVv~Sgs-fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sD-------y~g~p  185 (307)
T KOG0316|consen  114 SVVASGS-FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSD-------YFGHP  185 (307)
T ss_pred             eEEEecc-ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehh-------hcCCc
Confidence            8876666 7889999998431 11211        11111111 11   5788899988543111111       11222


Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      ...+.||+||..+++.+-
T Consensus       186 it~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             ceeEEecCCCCEEEEeec
Confidence            488999999999998743

>KOG0273|consensus

Probab=97.52  E-value=0.0059  Score=58.79  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC-------CceEeeE---EeeCce------------ecCCCceEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------HPVLVGQ---IFLGGK------------IQSDSGVTVID  237 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~-------~~~~v~~---i~~Gg~------------~~~~~~v~~~~  237 (290)
                      +....|.+.|.|..|..+. .++++.+|...+..       +.+.|-+   .|+|.-            .+.|++|++||
T Consensus       360 g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  360 GEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             CceEEEEECCCCceEEEec-CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            5678899999999998776 89999999975421       1112222   233311            26788899998


Q ss_pred             CCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        238 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ....  .|.- .+...  +.-+.+++|||+|++|+..+-
T Consensus       439 v~~g--v~i~-~f~kH--~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  439 VESG--VPIH-TLMKH--QEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             ccCC--ceeE-eeccC--CCceEEEEecCCCcEEEecCC
Confidence            6541  1110 01011  113689999999999998865

>KOG0319|consensus

Probab=97.51  E-value=0.0017  Score=65.25  Aligned_cols=136  Identities=16%  Similarity=0.129  Sum_probs=81.9

Q ss_pred             eEEEEEecCCCccCCCCCCCCC--CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKV--PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v--~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      +.-++..++.++++..-   ++  .+-+.-++|+|.|..|+ +...+|.|.|||+..   .-.+..+..           
T Consensus        84 ~llrv~~L~tgk~irsw---Ka~He~Pvi~ma~~~~g~LlA-tggaD~~v~VWdi~~---~~~th~fkG-----------  145 (775)
T KOG0319|consen   84 QLLRVWSLPTGKLIRSW---KAIHEAPVITMAFDPTGTLLA-TGGADGRVKVWDIKN---GYCTHSFKG-----------  145 (775)
T ss_pred             ceEEEEEcccchHhHhH---hhccCCCeEEEEEcCCCceEE-eccccceEEEEEeeC---CEEEEEecC-----------
Confidence            34566777777666554   44  23445789999995555 445689999999965   223322111           


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEE-EEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI-YVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~l-Yv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                                        .  |+-...+.|+|+-.+. ..+.+               +++.+..|+..+-..  .+.. 
T Consensus       146 ------------------~--gGvVssl~F~~~~~~~lL~sg~---------------~D~~v~vwnl~~~~t--cl~~-  187 (775)
T KOG0319|consen  146 ------------------H--GGVVSSLLFHPHWNRWLLASGA---------------TDGTVRVWNLNDKRT--CLHT-  187 (775)
T ss_pred             ------------------C--CceEEEEEeCCccchhheeecC---------------CCceEEEEEcccCch--HHHH-
Confidence                              0  1345668899997652 22222               233444455543110  0110 


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                             | ...-+...+++|++|+..+...+| +..+.+||..
T Consensus       188 -------~-~~H~S~vtsL~~~~d~~~~ls~~R-Dkvi~vwd~~  222 (775)
T KOG0319|consen  188 -------M-ILHKSAVTSLAFSEDSLELLSVGR-DKVIIVWDLV  222 (775)
T ss_pred             -------H-HhhhhheeeeeeccCCceEEEecc-CcEEEEeehh
Confidence                   0 011246788999999999998886 6689999984

>KOG0296|consensus

Probab=97.50  E-value=0.0037  Score=58.41  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      =.+.+..++++|+.+ |++++.+++.-.+|++.+..   .+.++ +|+                              ..
T Consensus        63 H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge---~~~el-tgH------------------------------KD  107 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGE---FAGEL-TGH------------------------------KD  107 (399)
T ss_pred             cCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCc---ceeEe-cCC------------------------------CC
Confidence            355788999999555 55666779999999997632   22221 221                              14


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEcc
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISL  189 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~Sp  189 (290)
                      .+..+.||-||.+|+. ..|++.+-+               +.+..   ...          -|.+- +.....-+..+|
T Consensus       108 SVt~~~FshdgtlLAT-GdmsG~v~v---------------~~~st---g~~----------~~~~~~e~~dieWl~WHp  158 (399)
T KOG0296|consen  108 SVTCCSFSHDGTLLAT-GDMSGKVLV---------------FKVST---GGE----------QWKLDQEVEDIEWLKWHP  158 (399)
T ss_pred             ceEEEEEccCceEEEe-cCCCccEEE---------------EEccc---Cce----------EEEeecccCceEEEEecc
Confidence            5677999999997774 334332211               22111   000          11111 112344588999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      -+++|.+.. .+++|..|.|..
T Consensus       159 ~a~illAG~-~DGsvWmw~ip~  179 (399)
T KOG0296|consen  159 RAHILLAGS-TDGSVWMWQIPS  179 (399)
T ss_pred             cccEEEeec-CCCcEEEEECCC
Confidence            999999888 799999999854

>KOG1273|consensus

Probab=97.48  E-value=0.005  Score=56.82  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      +++++.|+|||.|.++.. +..|.+||+.++.   .+.++...                                +....
T Consensus        68 i~sl~WS~dgr~LltsS~-D~si~lwDl~~gs---~l~rirf~--------------------------------spv~~  111 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGS---PLKRIRFD--------------------------------SPVWG  111 (405)
T ss_pred             eeEEEecCCCCEeeeecC-CceeEEEeccCCC---ceeEEEcc--------------------------------Cccce
Confidence            458999999999998875 8899999997743   33333231                                34556


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ..|||..+..+|+..+..             ...+  ++..+.  ...+.  |... .+ .  ....+....|.+-|+++
T Consensus       112 ~q~hp~k~n~~va~~~~~-------------sp~v--i~~s~~--~h~~L--p~d~-d~-d--ln~sas~~~fdr~g~yI  168 (405)
T KOG1273|consen  112 AQWHPRKRNKCVATIMEE-------------SPVV--IDFSDP--KHSVL--PKDD-DG-D--LNSSASHGVFDRRGKYI  168 (405)
T ss_pred             eeeccccCCeEEEEEecC-------------CcEE--EEecCC--ceeec--cCCC-cc-c--cccccccccccCCCCEE
Confidence            778998888888765321             1111  122110  00111  1000 00 0  01134445799999999


Q ss_pred             EEEeCCCCcEEEEEec
Q psy11412        195 YTSNWMHGDIRQYDIR  210 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~  210 (290)
                      |+.+ ..|.+.|+|..
T Consensus       169 itGt-sKGkllv~~a~  183 (405)
T KOG1273|consen  169 ITGT-SKGKLLVYDAE  183 (405)
T ss_pred             EEec-CcceEEEEecc
Confidence            9999 88999999864

>KOG0306|consensus

Probab=97.45  E-value=0.0044  Score=62.68  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      .-.|+++||++...++. .+.+|.+||.
T Consensus       457 IWsi~~~pD~~g~vT~s-aDktVkfWdf  483 (888)
T KOG0306|consen  457 IWSISLSPDNKGFVTGS-ADKTVKFWDF  483 (888)
T ss_pred             eeeeeecCCCCceEEec-CCcEEEEEeE
Confidence            34589999999987777 7999999997

>KOG0289|consensus

Probab=97.45  E-value=0.0042  Score=59.31  Aligned_cols=171  Identities=15%  Similarity=0.182  Sum_probs=101.8

Q ss_pred             EEEEEecCCCccCCCCCCCCCCC---ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPA---MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~---~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      -.-+.|.++.++....     .+   ..+.+.++|+-+.+.++.. +-.|+||.+.....+..+.               
T Consensus       242 ~av~~d~~s~q~l~~~-----~Gh~kki~~v~~~~~~~~v~~aSa-d~~i~vws~~~~s~~~~~~---------------  300 (506)
T KOG0289|consen  242 TAVLFDKPSNQILATL-----KGHTKKITSVKFHKDLDTVITASA-DEIIRVWSVPLSSEPTSSR---------------  300 (506)
T ss_pred             ceEEEecchhhhhhhc-----cCcceEEEEEEeccchhheeecCC-cceEEeeccccccCccccc---------------
Confidence            3456677776655533     33   5678899999999987764 6689999886533222211               


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                                ++         ...++.+.+||.|.+|..++. ...|-...+    .+|..+..+...            
T Consensus       301 ----------~h---------~~~V~~ls~h~tgeYllsAs~-d~~w~Fsd~----~~g~~lt~vs~~------------  344 (506)
T KOG0289|consen  301 ----------PH---------EEPVTGLSLHPTGEYLLSASN-DGTWAFSDI----SSGSQLTVVSDE------------  344 (506)
T ss_pred             ----------cc---------cccceeeeeccCCcEEEEecC-CceEEEEEc----cCCcEEEEEeec------------
Confidence                      11         135677999999998886653 233321111    122222111100            


Q ss_pred             ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCc
Q psy11412        168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDP  247 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~  247 (290)
                           .    ..-....++|+|||-.+ ++.-.++.|.+||+..+.   .+...+. .                      
T Consensus       345 -----~----s~v~~ts~~fHpDgLif-gtgt~d~~vkiwdlks~~---~~a~Fpg-h----------------------  388 (506)
T KOG0289|consen  345 -----T----SDVEYTSAAFHPDGLIF-GTGTPDGVVKIWDLKSQT---NVAKFPG-H----------------------  388 (506)
T ss_pred             -----c----ccceeEEeeEcCCceEE-eccCCCceEEEEEcCCcc---ccccCCC-C----------------------
Confidence                 0    01124568999999664 444478999999997532   2232221 1                      


Q ss_pred             ceeecccccCCcceEEEccCCCEEEEEcC-C-CCCCC
Q psy11412        248 VIIKGRRFTGSSQMFQLSLDGKRIYVSSS-L-FSPWD  282 (290)
Q Consensus       248 ~~~~~~~~~~~P~~~a~sPDG~~L~Van~-~-~~~~~  282 (290)
                              .+-...++|+-+|-||++++. . ..-||
T Consensus       389 --------t~~vk~i~FsENGY~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  389 --------TGPVKAISFSENGYWLATAADDGSVKLWD  417 (506)
T ss_pred             --------CCceeEEEeccCceEEEEEecCCeEEEEE
Confidence                    013588999999999999976 2 44454

>KOG0285|consensus

Probab=97.45  E-value=0.0015  Score=61.05  Aligned_cols=132  Identities=14%  Similarity=0.239  Sum_probs=86.7

Q ss_pred             EEEEecCCCccCCCCCCCC-CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         12 DKVIDIPAKQVQGYPGGDK-VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      -+++|++.++....+   + .-..+.++++|+---||+.+.. ++.|.+||++.   .+++... .|+       +    
T Consensus       175 ikIwDlatg~Lkltl---tGhi~~vr~vavS~rHpYlFs~ge-dk~VKCwDLe~---nkvIR~Y-hGH-------l----  235 (460)
T KOG0285|consen  175 IKIWDLATGQLKLTL---TGHIETVRGVAVSKRHPYLFSAGE-DKQVKCWDLEY---NKVIRHY-HGH-------L----  235 (460)
T ss_pred             eEEEEcccCeEEEee---cchhheeeeeeecccCceEEEecC-CCeeEEEechh---hhhHHHh-ccc-------c----
Confidence            368899998877654   2 2236779999999999997765 88999999976   3444332 221       1    


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                         +++..++++|.-+.|+..+.                +.+.   .+.|.+++..+..     
T Consensus       236 -------------------S~V~~L~lhPTldvl~t~gr----------------Dst~---RvWDiRtr~~V~~-----  272 (460)
T KOG0285|consen  236 -------------------SGVYCLDLHPTLDVLVTGGR----------------DSTI---RVWDIRTRASVHV-----  272 (460)
T ss_pred             -------------------ceeEEEeccccceeEEecCC----------------cceE---EEeeecccceEEE-----
Confidence                               68899999999998887654                1122   2333222322221     


Q ss_pred             cCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        171 LGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       171 ~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                           +++. +.++.+.+-|-.-.+|.+. .+.+|.+||+..
T Consensus       273 -----l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~a  308 (460)
T KOG0285|consen  273 -----LSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRA  308 (460)
T ss_pred             -----ecCCCCcceeEEeecCCCceEEec-CCceEEEeeecc
Confidence                 2222 4566777777444556666 789999999964

>KOG0265|consensus

Probab=97.44  E-value=0.014  Score=53.45  Aligned_cols=197  Identities=19%  Similarity=0.154  Sum_probs=113.4

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCC-CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKV-PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG   85 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~   85 (290)
                      |+=+.-.+-|+..++.+..-   +. ...+..+..+.-|-.|..+...++++++||++.....+....            
T Consensus       109 gtDk~v~~wD~~tG~~~rk~---k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------------  173 (338)
T KOG0265|consen  109 GTDKTVRGWDAETGKRIRKH---KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------------  173 (338)
T ss_pred             cCCceEEEEecccceeeehh---ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc------------
Confidence            55566677888877766544   33 335667777777889988888899999999975321111100            


Q ss_pred             eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412         86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                             .-....+.|..++........     |          + .+.+|+...    ....-
T Consensus       174 -----------------------kyqltAv~f~d~s~qv~sggI-----d----------n-~ikvWd~r~----~d~~~  210 (338)
T KOG0265|consen  174 -----------------------KYQLTAVGFKDTSDQVISGGI-----D----------N-DIKVWDLRK----NDGLY  210 (338)
T ss_pred             -----------------------ceeEEEEEecccccceeeccc-----c----------C-ceeeecccc----CcceE
Confidence                                   012344778888777765432     1          1 122232210    00000


Q ss_pred             cCccccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCcee-----------------
Q psy11412        166 MPLSSLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI-----------------  227 (290)
Q Consensus       166 ~p~~~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~-----------------  227 (290)
                               .+.+. ....+|.+||+|.+|- ||-.+++|.+||+..-....+.-.|..|...                 
T Consensus       211 ---------~lsGh~DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  211 ---------TLSGHADTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             ---------EeecccCceeeEEeccCCCccc-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence                     11111 3577899999999975 6668999999999531111111112223221                 


Q ss_pred             ----cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        228 ----QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       228 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                          +.|..|.+||...     ++..|+=..-.+..+.+.|.|.--.|..+..
T Consensus       281 i~ags~dr~vyvwd~~~-----r~~lyklpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  281 ITAGSADRFVYVWDTTS-----RRILYKLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             cccccccceEEEeeccc-----ccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence                4555688887543     1221111111235899999999998888765

>KOG0296|consensus

Probab=97.44  E-value=0.004  Score=58.25  Aligned_cols=114  Identities=15%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .++..+.||-||.+|++.+. +|.|.||..+.......+.    +                              .....
T Consensus       107 DSVt~~~FshdgtlLATGdm-sG~v~v~~~stg~~~~~~~----~------------------------------e~~di  151 (399)
T KOG0296|consen  107 DSVTCCSFSHDGTLLATGDM-SGKVLVFKVSTGGEQWKLD----Q------------------------------EVEDI  151 (399)
T ss_pred             CceEEEEEccCceEEEecCC-CccEEEEEcccCceEEEee----c------------------------------ccCce
Confidence            37889999999999998876 8999999997633211111    0                              01456


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~i~~SpDG  191 (290)
                      ..|..||-++.|...+...+.|-                |.+-.   ....+.          ++++ ..+..=.|.|||
T Consensus       152 eWl~WHp~a~illAG~~DGsvWm----------------w~ip~---~~~~kv----------~~Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  152 EWLKWHPRAHILLAGSTDGSVWM----------------WQIPS---QALCKV----------MSGHNSPCTCGEFIPDG  202 (399)
T ss_pred             EEEEecccccEEEeecCCCcEEE----------------EECCC---cceeeE----------ecCCCCCcccccccCCC
Confidence            77999999999988766434332                11110   000110          1111 122334699999


Q ss_pred             CEEEEEeCCCCcEEEEEecC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |++.+.. .+++|.+|+...
T Consensus       203 Kr~~tgy-~dgti~~Wn~kt  221 (399)
T KOG0296|consen  203 KRILTGY-DDGTIIVWNPKT  221 (399)
T ss_pred             ceEEEEe-cCceEEEEecCC
Confidence            9999887 699999998853

>KOG0299|consensus

Probab=97.43  E-value=0.0089  Score=57.35  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      +..++++.|.-..+..+. .++.|.+|-+.+-. ...++..++.-|                                ..
T Consensus       382 Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r~i~~l~~ls~~G--------------------------------fV  428 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLRAINLLYSLSLVG--------------------------------FV  428 (479)
T ss_pred             ceeeeEecccCceEEecC-CCCceEEEEecCCccccceeeeccccc--------------------------------EE
Confidence            778899999766655444 78999999996521 233455554433                                68


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      +.++|+++|++|+|+..
T Consensus       429 Nsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  429 NSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEEEccCCCEEEEecc
Confidence            89999999999999854

>KOG2048|consensus

Probab=97.42  E-value=0.015  Score=58.16  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=110.1

Q ss_pred             ceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412          8 TYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      .|-...||-.+.            ..+..+++++ +|.+|++++. +|+|.-||+.+.   +..-.+..           
T Consensus        57 ~w~~~~vi~g~~------------drsIE~L~W~-e~~RLFS~g~-sg~i~EwDl~~l---k~~~~~d~-----------  108 (691)
T KOG2048|consen   57 NWFLEPVIHGPE------------DRSIESLAWA-EGGRLFSSGL-SGSITEWDLHTL---KQKYNIDS-----------  108 (691)
T ss_pred             CceeeEEEecCC------------CCceeeEEEc-cCCeEEeecC-CceEEEEecccC---ceeEEecC-----------
Confidence            566666665543            3467888998 6778888876 899999999763   22211111           


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeee-eeeccccccc
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIME-FIQRNEMRSM  166 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~  166 (290)
                                          .|+....|+.+|.+..+.+.++.               | .+..++.-. ..+.....  
T Consensus       109 --------------------~gg~IWsiai~p~~~~l~Igcdd---------------G-vl~~~s~~p~~I~~~r~l--  150 (691)
T KOG2048|consen  109 --------------------NGGAIWSIAINPENTILAIGCDD---------------G-VLYDFSIGPDKITYKRSL--  150 (691)
T ss_pred             --------------------CCcceeEEEeCCccceEEeecCC---------------c-eEEEEecCCceEEEEeec--
Confidence                                13556889999999999998662               2 111111100 00000000  


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEe------------------eEEeeCcee-
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV------------------GQIFLGGKI-  227 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v------------------~~i~~Gg~~-  227 (290)
                      .+         ..+..-.+.++|+|..|+..+ .++.|.+||+....+..++                  ..+..+--+ 
T Consensus       151 ~r---------q~sRvLslsw~~~~~~i~~Gs-~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s  220 (691)
T KOG2048|consen  151 MR---------QKSRVLSLSWNPTGTKIAGGS-IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS  220 (691)
T ss_pred             cc---------ccceEEEEEecCCccEEEecc-cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence            00         113456799999999998877 7888999999653332211                  111111000 


Q ss_pred             -cCCCceEEecCCCCC-CCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        228 -QSDSGVTVIDDPELD-KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       228 -~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                       -..|+|+.||...-+ .+++..      ..+....++.++++.++++|..
T Consensus       221 gDS~G~V~FWd~~~gTLiqS~~~------h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTLIQSHSC------HDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             ecCCceEEEEcccCcchhhhhhh------hhcceeEEEEcCCCCeEEEccC
Confidence             345678889865421 111110      0235788999999999999865

>KOG0278|consensus

Probab=97.41  E-value=0.0054  Score=55.04  Aligned_cols=109  Identities=14%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ...+.+-...+.+.++. .+++|++||...   ...+.++...                                +.+..
T Consensus       146 Ir~v~wc~eD~~iLSSa-dd~tVRLWD~rT---gt~v~sL~~~--------------------------------s~VtS  189 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSA-DDKTVRLWDHRT---GTEVQSLEFN--------------------------------SPVTS  189 (334)
T ss_pred             ceeEEEeccCceEEeec-cCCceEEEEecc---CcEEEEEecC--------------------------------CCCcc
Confidence            34455555667777764 589999999975   3344443332                                46777


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      +-+|+||++|-++..                 ..+.-++...|.   .++.        ..+  +..+....++|+-.+ 
T Consensus       190 lEvs~dG~ilTia~g-----------------ssV~Fwdaksf~---~lKs--------~k~--P~nV~SASL~P~k~~-  238 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYG-----------------SSVKFWDAKSFG---LLKS--------YKM--PCNVESASLHPKKEF-  238 (334)
T ss_pred             eeeccCCCEEEEecC-----------------ceeEEecccccc---ceee--------ccC--ccccccccccCCCce-
Confidence            999999998877532                 233334443321   1111        011  223445678999855 


Q ss_pred             EEEeCCCCcEEEEEec
Q psy11412        195 YTSNWMHGDIRQYDIR  210 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~  210 (290)
                      ||+.-.+.-+..||-.
T Consensus       239 fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYN  254 (334)
T ss_pred             EEecCcceEEEEEecc
Confidence            5554367788999885

>KOG0305|consensus

Probab=97.40  E-value=0.0043  Score=60.83  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=94.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ..-+|++.+++|+++|++.+ .++.+.+||..+.. +..  .+..+                               .+.
T Consensus       301 ~qeVCgLkws~d~~~lASGg-nDN~~~Iwd~~~~~-p~~--~~~~H-------------------------------~aA  345 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQLASGG-NDNVVFIWDGLSPE-PKF--TFTEH-------------------------------TAA  345 (484)
T ss_pred             cceeeeeEECCCCCeeccCC-CccceEeccCCCcc-ccE--EEecc-------------------------------cee
Confidence            45789999999999997554 58999999985422 211  11111                               145


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +..|+|+|--+-|-.+.+...  |           ..+..+++..   ...+..          +-.+.++..|..|+..
T Consensus       346 VKA~awcP~q~~lLAsGGGs~--D-----------~~i~fwn~~~---g~~i~~----------vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSA--D-----------RCIKFWNTNT---GARIDS----------VDTGSQVCSLIWSKKY  399 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCc--c-----------cEEEEEEcCC---CcEecc----------cccCCceeeEEEcCCC
Confidence            677999997766665554211  1           1222223221   111111          1124577889999999


Q ss_pred             CEEEEE-eCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTS-NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs-~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      +.|.++ ...++.|.||+...   .+.+..+ .|..                              ...=.+++||||..
T Consensus       400 kEi~sthG~s~n~i~lw~~ps---~~~~~~l-~gH~------------------------------~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPS---MKLVAEL-LGHT------------------------------SRVLYLALSPDGET  445 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccc---cceeeee-cCCc------------------------------ceeEEEEECCCCCE
Confidence            776543 44568999999853   3333322 2331                              13567999999999


Q ss_pred             EEEEcC--CCCCC
Q psy11412        271 IYVSSS--LFSPW  281 (290)
Q Consensus       271 L~Van~--~~~~~  281 (290)
                      ++++..  +++-|
T Consensus       446 i~t~a~DETlrfw  458 (484)
T KOG0305|consen  446 IVTGAADETLRFW  458 (484)
T ss_pred             EEEecccCcEEec
Confidence            999976  55555

>KOG0294|consensus

Probab=97.37  E-value=0.014  Score=53.87  Aligned_cols=200  Identities=13%  Similarity=0.167  Sum_probs=115.8

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCC--EEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDR--YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr--~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      +.-.+.|++..+..+.+ .. =.+..+.+.|+++-.  .|.++. .+|.|.+|++.+   =..+..++..          
T Consensus        63 etI~IYDm~k~~qlg~l-l~-HagsitaL~F~~~~S~shLlS~s-dDG~i~iw~~~~---W~~~~slK~H----------  126 (362)
T KOG0294|consen   63 ETIHIYDMRKRKQLGIL-LS-HAGSITALKFYPPLSKSHLLSGS-DDGHIIIWRVGS---WELLKSLKAH----------  126 (362)
T ss_pred             CcEEEEeccchhhhcce-ec-cccceEEEEecCCcchhheeeec-CCCcEEEEEcCC---eEEeeeeccc----------
Confidence            34456677765544443 22 155788999999875  776554 589999999854   2333333221          


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                                          . +.+.+++.||.||.+..+..                +..+..|+++...   .     
T Consensus       127 --------------------~-~~Vt~lsiHPS~KLALsVg~----------------D~~lr~WNLV~Gr---~-----  161 (362)
T KOG0294|consen  127 --------------------K-GQVTDLSIHPSGKLALSVGG----------------DQVLRTWNLVRGR---V-----  161 (362)
T ss_pred             --------------------c-cccceeEecCCCceEEEEcC----------------CceeeeehhhcCc---c-----
Confidence                                1 34889999999998877654                2234334443210   0     


Q ss_pred             ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC------Cce--Ee------eEEeeCceecCCCce
Q psy11412        168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA------HPV--LV------GQIFLGGKIQSDSGV  233 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~------~~~--~v------~~i~~Gg~~~~~~~v  233 (290)
                           .....-...+.-|.++|.|.+.|++.|  +.|-+|.+.+..      .++  ..      ....+|+   ++..+
T Consensus       162 -----a~v~~L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~---d~~~i  231 (362)
T KOG0294|consen  162 -----AFVLNLKNKATLVSWSPQGDHFVVSGR--NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGG---DNEWI  231 (362)
T ss_pred             -----ceeeccCCcceeeEEcCCCCEEEEEec--cEEEEEecccHhHhhhhhccccceeeeecCCceEEEec---CCceE
Confidence                 001111234456999999999888874  678888875421      111  11      1123344   56778


Q ss_pred             EEecCCCCCCCCCcceeecccccCCcceEE--EccCCCEEEEEcC--CCCCCCccc
Q psy11412        234 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQ--LSLDGKRIYVSSS--LFSPWDKEI  285 (290)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a--~sPDG~~L~Van~--~~~~~~~~~  285 (290)
                      +++|.++. ..+..  +.+..  .+.-+|.  ..|++.+|..|++  .+..||...
T Consensus       232 ~~~D~ds~-~~~~~--~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  232 SLKDTDSD-TPLTE--FLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             EEeccCCC-cccee--eecch--hheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            88887652 11110  00100  1233444  4688889988877  778887643

>KOG1273|consensus

Probab=97.37  E-value=0.0026  Score=58.61  Aligned_cols=148  Identities=18%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ...+.||+-|.+|++.+- +|.|.+||+.+-. +   +.+..++       +                       .....
T Consensus        26 a~~~~Fs~~G~~lAvGc~-nG~vvI~D~~T~~-i---ar~lsaH-------~-----------------------~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA-NGRVVIYDFDTFR-I---ARMLSAH-------V-----------------------RPITS   70 (405)
T ss_pred             cceEEeccCcceeeeecc-CCcEEEEEccccc-h---hhhhhcc-------c-----------------------cceeE
Confidence            557889999999999875 8999999997632 1   1111111       0                       23466


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      +++|+|||.|..++.   .|             .+..||+.+....+.++           ++  ...-...++|--+..
T Consensus        71 l~WS~dgr~LltsS~---D~-------------si~lwDl~~gs~l~rir-----------f~--spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSR---DW-------------SIKLWDLLKGSPLKRIR-----------FD--SPVWGAQWHPRKRNK  121 (405)
T ss_pred             EEecCCCCEeeeecC---Cc-------------eeEEEeccCCCceeEEE-----------cc--CccceeeeccccCCe
Confidence            999999999998765   11             23344544322111111           11  122345677766666


Q ss_pred             EEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEE
Q psy11412        195 YTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Va  274 (290)
                      .++.-.+.+-.+.+++++.+ +.+.. ...+      .+                      ...++...|++-|+++|+.
T Consensus       122 ~va~~~~~sp~vi~~s~~~h-~~Lp~-d~d~------dl----------------------n~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen  122 CVATIMEESPVVIDFSDPKH-SVLPK-DDDG------DL----------------------NSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             EEEEEecCCcEEEEecCCce-eeccC-CCcc------cc----------------------ccccccccccCCCCEEEEe
Confidence            65554565666777766322 11110 0001      00                      0134556899999999999


Q ss_pred             cC
Q psy11412        275 SS  276 (290)
Q Consensus       275 n~  276 (290)
                      |+
T Consensus       172 ts  173 (405)
T KOG1273|consen  172 TS  173 (405)
T ss_pred             cC
Confidence            88

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.34  E-value=0.028  Score=51.83  Aligned_cols=202  Identities=13%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             EEecCCCccCCCCCCCC--C--CCceEEEEEcCC-C----CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCC
Q psy11412         14 VIDIPAKQVQGYPGGDK--V--PAMVTDILISLD-D----RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS   84 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~--v--~~~p~~va~SpD-G----r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~   84 (290)
                      ++|+...++..+.-.++  +  ..+...++++.. +    .++|.++.+.+.|-|||+.+...-+++.     +.....+
T Consensus        38 ~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~-----~~~~~~p  112 (287)
T PF03022_consen   38 AFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLH-----NSFSPDP  112 (287)
T ss_dssp             EEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEET-----CGCTTS-
T ss_pred             EEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEec-----CCcceec
Confidence            45666666544430110  1  236667888773 2    7999999999999999997743222221     1111110


Q ss_pred             -ceEEecCCCCcCCCCcceeeccccCCCceEEEEcc---CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec
Q psy11412         85 -GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL---DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR  160 (290)
Q Consensus        85 -~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsP---dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~  160 (290)
                       ...+....       ..  ..  ...+..+++++|   ||++||-..-.+.               .+..+.+..+...
T Consensus       113 ~~~~~~i~g-------~~--~~--~~dg~~gial~~~~~d~r~LYf~~lss~---------------~ly~v~T~~L~~~  166 (287)
T PF03022_consen  113 DAGPFTIGG-------ES--FQ--WPDGIFGIALSPISPDGRWLYFHPLSSR---------------KLYRVPTSVLRDP  166 (287)
T ss_dssp             SSEEEEETT-------EE--EE--ETTSEEEEEE-TTSTTS-EEEEEETT-S---------------EEEEEEHHHHCST
T ss_pred             cccceeccC-------ce--Ee--cCCCccccccCCCCCCccEEEEEeCCCC---------------cEEEEEHHHhhCc
Confidence             00000000       00  01  114678888877   8999997543111               1111111000000


Q ss_pred             cccccc-CccccCccccCC-CCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecC
Q psy11412        161 NEMRSM-PLSSLGSWKYPA-RSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD  238 (290)
Q Consensus       161 ~~i~~~-p~~~~~~~~~~~-~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~  238 (290)
                      ...... -...++.  +.. ++...+++++++| .||.++-.++.|..|+...+-.+.-+..+-.             |.
T Consensus       167 ~~~~~~~~~~~v~~--lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-------------d~  230 (287)
T PF03022_consen  167 SLSDAQALASQVQD--LGDKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-------------DP  230 (287)
T ss_dssp             T--HHH-HHHT-EE--EEE---SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------C
T ss_pred             ccccccccccccee--ccccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEE-------------cC
Confidence            000000 0000000  000 1345679999977 5688888899999999754222211221111             11


Q ss_pred             CCCCCCCCcceeecccccCCcceEEEcc--CCCEEEEEcCC
Q psy11412        239 PELDKQPDPVIIKGRRFTGSSQMFQLSL--DGKRIYVSSSL  277 (290)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~P~~~a~sP--DG~~L~Van~~  277 (290)
                      ..+               .+|.+|.+.+  +|..-+.+|++
T Consensus       231 ~~l---------------~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  231 RTL---------------QWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             C-G---------------SSEEEEEE-T--TS-EEEEE-S-
T ss_pred             cee---------------eccceeeeccccCceEEEEECcc
Confidence            100               2799999999  99888888874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2394|consensus

Probab=97.33  E-value=0.00041  Score=67.59  Aligned_cols=61  Identities=28%  Similarity=0.383  Sum_probs=45.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .++..+|||||++|++... +|.++|||+..   .+++..++                              ... +|--
T Consensus       292 ~in~f~FS~DG~~LA~VSq-DGfLRvF~fdt---~eLlg~mk------------------------------SYF-GGLL  336 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQ-DGFLRIFDFDT---QELLGVMK------------------------------SYF-GGLL  336 (636)
T ss_pred             cccceeEcCCCceEEEEec-CceEEEeeccH---HHHHHHHH------------------------------hhc-cceE
Confidence            6788999999999998875 89999999964   33332110                              011 4566


Q ss_pred             EEEEccCCCEEEEEcC
Q psy11412        114 MFQLSLDGKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPdG~~lYv~ne  129 (290)
                      .+.+|||||++.+..|
T Consensus       337 CvcWSPDGKyIvtGGE  352 (636)
T KOG2394|consen  337 CVCWSPDGKYIVTGGE  352 (636)
T ss_pred             EEEEcCCccEEEecCC
Confidence            7999999999888776

>KOG0640|consensus

Probab=97.32  E-value=0.013  Score=54.07  Aligned_cols=119  Identities=20%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.++.|.|.|.+|+++.. ..++++||+..-  .-.+...       |.             ..+         ..+..
T Consensus       218 ~vrsiSfHPsGefllvgTd-Hp~~rlYdv~T~--Qcfvsan-------Pd-------------~qh---------t~ai~  265 (430)
T KOG0640|consen  218 PVRSISFHPSGEFLLVGTD-HPTLRLYDVNTY--QCFVSAN-------PD-------------DQH---------TGAIT  265 (430)
T ss_pred             eeeeEeecCCCceEEEecC-CCceeEEeccce--eEeeecC-------cc-------------ccc---------cccee
Confidence            4568999999999998875 679999999651  1111110       00             000         14677


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+-+|+.|+ ||++..              ++| .+.+||-++   .+-+.++...  .     ++...-...|+.|||+
T Consensus       266 ~V~Ys~t~~-lYvTaS--------------kDG-~IklwDGVS---~rCv~t~~~A--H-----~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  266 QVRYSSTGS-LYVTAS--------------KDG-AIKLWDGVS---NRCVRTIGNA--H-----GGSEVCSAVFTKNGKY  319 (430)
T ss_pred             EEEecCCcc-EEEEec--------------cCC-cEEeecccc---HHHHHHHHhh--c-----CCceeeeEEEccCCeE
Confidence            799999997 787765              233 444555543   2223322211  0     1245566789999999


Q ss_pred             EEEEeCCCCcEEEEEecC
Q psy11412        194 LYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +..|. .+..|.+|.|..
T Consensus       320 iLsSG-~DS~vkLWEi~t  336 (430)
T KOG0640|consen  320 ILSSG-KDSTVKLWEIST  336 (430)
T ss_pred             EeecC-CcceeeeeeecC
Confidence            99888 788999999964

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.29  E-value=0.027  Score=55.16  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDI   62 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv   62 (290)
                      .|.+|+|.|||+.| |+-...|+|++++-
T Consensus        31 ~Pw~maflPDG~ll-VtER~~G~I~~v~~   58 (454)
T TIGR03606        31 KPWALLWGPDNQLW-VTERATGKILRVNP   58 (454)
T ss_pred             CceEEEEcCCCeEE-EEEecCCEEEEEeC
Confidence            79999999999654 66554689988864

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0643|consensus

Probab=97.28  E-value=0.011  Score=53.44  Aligned_cols=151  Identities=14%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC----CCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW----MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~----~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      .+.-|++.+++....   +.+..+..+.|+++|.++.++..    ..+.|.++|+.+...-...           ..++.
T Consensus        76 ~kLWDv~tGk~la~~---k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-----------~ep~~  141 (327)
T KOG0643|consen   76 AKLWDVETGKQLATW---KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS-----------EEPYL  141 (327)
T ss_pred             eEEEEcCCCcEEEEe---ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc-----------cCceE
Confidence            356678888887776   78888889999999998877643    2578999999753211000           11111


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                      .|.-                .-+.+..+.++|-++++....|.               | .+.++|+..-  ...+.   
T Consensus       142 kI~t----------------~~skit~a~Wg~l~~~ii~Ghe~---------------G-~is~~da~~g--~~~v~---  184 (327)
T KOG0643|consen  142 KIPT----------------PDSKITSALWGPLGETIIAGHED---------------G-SISIYDARTG--KELVD---  184 (327)
T ss_pred             EecC----------------CccceeeeeecccCCEEEEecCC---------------C-cEEEEEcccC--ceeee---
Confidence            1110                01466678899999999887662               2 2333333210  00111   


Q ss_pred             ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      ....      ......+|.+|||..+..++. .+.+-.+||+.+   +..+.++.+
T Consensus       185 s~~~------h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D~~t---l~v~Kty~t  230 (327)
T KOG0643|consen  185 SDEE------HSSKINDLQFSRDRTYFITGS-KDTTAKLVDVRT---LEVLKTYTT  230 (327)
T ss_pred             chhh------hccccccccccCCcceEEecc-cCccceeeeccc---eeeEEEeee
Confidence            0000      113566799999999988877 577788999864   555555544

>KOG0284|consensus

Probab=97.27  E-value=0.0089  Score=56.72  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|||.....+ ++.++|+|.+||+..+..-.++    .|+                              |--++
T Consensus       182 aIRdlafSpnDskF~-t~SdDg~ikiWdf~~~kee~vL----~GH------------------------------gwdVk  226 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFL-TCSDDGTIKIWDFRMPKEERVL----RGH------------------------------GWDVK  226 (464)
T ss_pred             hhheeccCCCCceeE-EecCCCeEEEEeccCCchhhee----ccC------------------------------CCCcc
Confidence            577899999666554 5567999999999754322222    221                              24688


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+..||....+++.+.               +. .+..||..+   .+-+.++.     +    .-+.+.++.|+|+|.+
T Consensus       227 svdWHP~kgLiasgsk---------------Dn-lVKlWDprS---g~cl~tlh-----~----HKntVl~~~f~~n~N~  278 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSK---------------DN-LVKLWDPRS---GSCLATLH-----G----HKNTVLAVKFNPNGNW  278 (464)
T ss_pred             eeccCCccceeEEccC---------------Cc-eeEeecCCC---cchhhhhh-----h----ccceEEEEEEcCCCCe
Confidence            8999999988887543               22 343344322   22232211     0    1246778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCC-------CCceE---eeEEeeCcee----cCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        194 LYTSNWMHGDIRQYDIRDT-------AHPVL---VGQIFLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~-------~~~~~---v~~i~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      |.+..+ +.++.+|||...       ++.+.   ++-.|+-..+    ..|+.|.-+....+...+.++.   .+ .+..
T Consensus       279 Llt~sk-D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~---AH-d~~i  353 (464)
T KOG0284|consen  279 LLTGSK-DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP---AH-DGEI  353 (464)
T ss_pred             eEEccC-CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc---cc-ccce
Confidence            999884 668999999621       11111   1111111111    2466676666553221111110   00 1247


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ++++..|=|..|+.+..
T Consensus       354 wsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  354 WSLAYHPLGHILATGSN  370 (464)
T ss_pred             eeeeccccceeEeecCC
Confidence            89999999999988643

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.26  E-value=0.0071  Score=56.81  Aligned_cols=26  Identities=19%  Similarity=0.191  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      .|++|++.|||+. ||+.. .|.|.+++
T Consensus         3 ~P~~~a~~pdG~l-~v~e~-~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRL-LVAER-SGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCE-EEEET-TTEEEEEE
T ss_pred             CceEEEEeCCCcE-EEEeC-CceEEEEe
Confidence            5999999999865 56776 89999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0771|consensus

Probab=97.25  E-value=0.0049  Score=58.36  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=35.6

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT   65 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~   65 (290)
                      +|++-|..+....  +.+-.+.+..+.|||||++|+....  +..+||++.+.
T Consensus       169 Rv~~~Ps~~t~l~--e~~~~~eV~DL~FS~dgk~lasig~--d~~~VW~~~~g  217 (398)
T KOG0771|consen  169 RVWEWPSMLTILE--EIAHHAEVKDLDFSPDGKFLASIGA--DSARVWSVNTG  217 (398)
T ss_pred             EEEecCcchhhhh--hHhhcCccccceeCCCCcEEEEecC--CceEEEEeccC
Confidence            5566566665554  2345567889999999999976543  48999999875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.20  E-value=0.0035  Score=60.57  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...++.+||||++++++|. ...|.++|+++ ++++++..-.-                                 +-..
T Consensus       403 ~I~av~vs~dGK~~vvaNd-r~el~vididn-gnv~~idkS~~---------------------------------~lIt  447 (668)
T COG4946         403 NIEAVKVSPDGKKVVVAND-RFELWVIDIDN-GNVRLIDKSEY---------------------------------GLIT  447 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcC-ceEEEEEEecC-CCeeEeccccc---------------------------------ceeE
Confidence            6789999999999999985 67999999976 45555532111                                 2455


Q ss_pred             EEEEccCCCEEEEE
Q psy11412        114 MFQLSLDGKRIYVS  127 (290)
Q Consensus       114 ~vafsPdG~~lYv~  127 (290)
                      .+++||+++|++-+
T Consensus       448 df~~~~nsr~iAYa  461 (668)
T COG4946         448 DFDWHPNSRWIAYA  461 (668)
T ss_pred             EEEEcCCceeEEEe
Confidence            68999999998765

>KOG2048|consensus

Probab=97.12  E-value=0.017  Score=57.75  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      |....++|+|.+.+.|+++- .+|.|.+|++...  .-....+..+                              .-+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsR-t~g~IEiwN~~~~--w~~~~vi~g~------------------------------~drs   71 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR-TDGNIEIWNLSNN--WFLEPVIHGP------------------------------EDRS   71 (691)
T ss_pred             ccceEEEEEeccCCceeeec-cCCcEEEEccCCC--ceeeEEEecC------------------------------CCCc
Confidence            45678999999999998875 5899999999752  2222222221                              1156


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ..++++++.| +|+.+.-                .+.+..||+.+..+...+..            -++..-.|+++|-+
T Consensus        72 IE~L~W~e~~-RLFS~g~----------------sg~i~EwDl~~lk~~~~~d~------------~gg~IWsiai~p~~  122 (691)
T KOG2048|consen   72 IESLAWAEGG-RLFSSGL----------------SGSITEWDLHTLKQKYNIDS------------NGGAIWSIAINPEN  122 (691)
T ss_pred             eeeEEEccCC-eEEeecC----------------CceEEEEecccCceeEEecC------------CCcceeEEEeCCcc
Confidence            7889999555 5665443                22444566554322111110            11234468999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEe-eCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF-LGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~-~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ..|.+++ .++.+..+++.    +..|..-. .+.+                             -++.-.+.|+|+|.+
T Consensus       123 ~~l~Igc-ddGvl~~~s~~----p~~I~~~r~l~rq-----------------------------~sRvLslsw~~~~~~  168 (691)
T KOG2048|consen  123 TILAIGC-DDGVLYDFSIG----PDKITYKRSLMRQ-----------------------------KSRVLSLSWNPTGTK  168 (691)
T ss_pred             ceEEeec-CCceEEEEecC----CceEEEEeecccc-----------------------------cceEEEEEecCCccE
Confidence            9999998 56655444442    22222211 1110                             124567899999999


Q ss_pred             EEEEcC--CCCCCCcc
Q psy11412        271 IYVSSS--LFSPWDKE  284 (290)
Q Consensus       271 L~Van~--~~~~~~~~  284 (290)
                      |+..+.  .+..||.+
T Consensus       169 i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EEecccCceEEEEEcC
Confidence            998877  46788764

>KOG0294|consensus

Probab=97.11  E-value=0.012  Score=54.33  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412         36 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  115 (290)
Q Consensus        36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v  115 (290)
                      ..+|+  +|++|++. ..+.+|++||....   ..++.+...                               .+....+
T Consensus        47 tavAV--s~~~~aSG-ssDetI~IYDm~k~---~qlg~ll~H-------------------------------agsitaL   89 (362)
T KOG0294|consen   47 TALAV--SGPYVASG-SSDETIHIYDMRKR---KQLGILLSH-------------------------------AGSITAL   89 (362)
T ss_pred             eEEEe--cceeEecc-CCCCcEEEEeccch---hhhcceecc-------------------------------ccceEEE
Confidence            34554  68998654 46889999998642   222222111                               0234556


Q ss_pred             EEccCCC--EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        116 QLSLDGK--RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       116 afsPdG~--~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .|.+.-.  +|..+.+                ++.+.+|++.+......++            +....+.+|+++|-||.
T Consensus        90 ~F~~~~S~shLlS~sd----------------DG~i~iw~~~~W~~~~slK------------~H~~~Vt~lsiHPS~KL  141 (362)
T KOG0294|consen   90 KFYPPLSKSHLLSGSD----------------DGHIIIWRVGSWELLKSLK------------AHKGQVTDLSIHPSGKL  141 (362)
T ss_pred             EecCCcchhheeeecC----------------CCcEEEEEcCCeEEeeeec------------ccccccceeEecCCCce
Confidence            6777654  5554433                3355556654421111111            11235788999999997


Q ss_pred             EEEEeCCCCcEEEEEecC
Q psy11412        194 LYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ...-. ++..+..|++-.
T Consensus       142 ALsVg-~D~~lr~WNLV~  158 (362)
T KOG0294|consen  142 ALSVG-GDQVLRTWNLVR  158 (362)
T ss_pred             EEEEc-CCceeeeehhhc
Confidence            55444 789999999864

>KOG2111|consensus

Probab=97.09  E-value=0.049  Score=50.33  Aligned_cols=64  Identities=22%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCc-EEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~-V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      +..+-|+++-+|..|+++. ..|+ |++||..+   ...+.+..-|-.                             ...
T Consensus       182 s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~~---g~~l~E~RRG~d-----------------------------~A~  228 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATAS-TKGTLIRIFDTED---GTLLQELRRGVD-----------------------------RAD  228 (346)
T ss_pred             CceeEEEEcCCccEEEEec-cCcEEEEEEEcCC---CcEeeeeecCCc-----------------------------hhe
Confidence            4566789999999998887 5555 88998754   455666555541                             115


Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      -..|+||||+.+|+|++.
T Consensus       229 iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             EEEEEeCCCccEEEEEcC
Confidence            788999999999999976

>KOG4497|consensus

Probab=97.06  E-value=0.0036  Score=58.08  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      .+...+..|||||.+..+.+.+-.|.||.+.+. ....+....+                                  ..
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~~~~~~pK~----------------------------------~~  136 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KGYLLPHPKT----------------------------------NV  136 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccc-eeEEeccccc----------------------------------Cc
Confidence            355678999999999888878999999998532 2222322211                                  34


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ..++|.|||++.+.+.+
T Consensus       137 kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  137 KGYAFHPDGQFCAILSR  153 (447)
T ss_pred             eeEEECCCCceeeeeec
Confidence            67999999999998865

>KOG1445|consensus

Probab=97.05  E-value=0.0024  Score=63.54  Aligned_cols=119  Identities=20%  Similarity=0.212  Sum_probs=69.5

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeE---EeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ---IFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~---i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+..+..+| |..+|+|++. +|.|.+|.+...+.++..-+   +.++                              -+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~d-dg~i~lWr~~a~gl~e~~~tPe~~lt~------------------------------h~  677 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATD-DGQINLWRLTANGLPENEMTPEKILTI------------------------------HG  677 (1012)
T ss_pred             eeeecccCCCChHHeeeccc-CceEEEEEeccCCCCcccCCcceeeec------------------------------cc
Confidence            455677777 7788999985 89999999976543332210   0010                              02


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .....+.|||=..-+..+..         |      +.++..||+....    ..    ..+.+    ...+..+|+.||
T Consensus       678 eKI~slRfHPLAadvLa~as---------y------d~Ti~lWDl~~~~----~~----~~l~g----HtdqIf~~AWSp  730 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVAS---------Y------DSTIELWDLANAK----LY----SRLVG----HTDQIFGIAWSP  730 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhh---------c------cceeeeeehhhhh----hh----heecc----CcCceeEEEECC
Confidence            35566788885422222221         1      1234445543210    00    01111    125678899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |||.+..-+ -+++|.||.-..
T Consensus       731 dGr~~AtVc-KDg~~rVy~Prs  751 (1012)
T KOG1445|consen  731 DGRRIATVC-KDGTLRVYEPRS  751 (1012)
T ss_pred             CCcceeeee-cCceEEEeCCCC
Confidence            999998888 789999996543

>KOG0321|consensus

Probab=97.01  E-value=0.014  Score=58.18  Aligned_cols=137  Identities=18%  Similarity=0.255  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeee-EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~-~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ....+..-| |.-++|+..|+.++++||+...   ++++ .+..|+                              ....
T Consensus       102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s---~l~G~~~~~GH------------------------------~~Sv  147 (720)
T KOG0321|consen  102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTS---RLVGGRLNLGH------------------------------TGSV  147 (720)
T ss_pred             eeEeeccCC-CceeEEEccCCceeeeeeeccc---eeecceeeccc------------------------------cccc
Confidence            444677778 8888889889999999999652   2221 123332                              1356


Q ss_pred             eEEEEccCCCEEEEEcCCCCC---cceeecccccCCCceeecceee-eeee---cccccccCccccCccccCCCCceeE-
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSP---WDKEIYPDLVKTDAAFGSDEIM-EFIQ---RNEMRSMPLSSLGSWKYPARSMVTD-  184 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~---~d~~~~~~~~~~g~~~~~~~~~-~~~~---~~~i~~~p~~~~~~~~~~~~~~~~~-  184 (290)
                      ..++|+|+..-++|+..-++.   ||....-.     ..+..++.. ....   +.+..... .....|-.+ ...... 
T Consensus       148 kS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-----d~~e~~~~~~~~~~n~~ptpskp~~-kr~~k~kA~-s~ti~ss  220 (720)
T KOG0321|consen  148 KSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-----DALEEFDNRIYGRHNTAPTPSKPLK-KRIRKWKAA-SNTIFSS  220 (720)
T ss_pred             chhhhccCCCcceeeccCCCcEEEEEEeccch-----hhHHHHhhhhhccccCCCCCCchhh-ccccccccc-cCceeee
Confidence            779999999999998764332   33211000     000000000 0000   00000000 011222111 122223 


Q ss_pred             --EEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        185 --ILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       185 --i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                        +.+..|...|+.+...|+.|.||||..
T Consensus       221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  221 VTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             eEEEEEeccceeeeccCCCcceEEEeecc
Confidence              778899999999987899999999964

>KOG0650|consensus

Probab=96.99  E-value=0.026  Score=56.04  Aligned_cols=58  Identities=12%  Similarity=0.155  Sum_probs=42.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+.+|.++|-|.+|+. +..+|+|++|-+..   .+++..+.++                                +..
T Consensus       401 g~Vr~iSvdp~G~wlas-GsdDGtvriWEi~T---gRcvr~~~~d--------------------------------~~I  444 (733)
T KOG0650|consen  401 GLVRSISVDPSGEWLAS-GSDDGTVRIWEIAT---GRCVRTVQFD--------------------------------SEI  444 (733)
T ss_pred             CeEEEEEecCCcceeee-cCCCCcEEEEEeec---ceEEEEEeec--------------------------------cee
Confidence            35678999999999964 45699999999965   5666655554                                456


Q ss_pred             eEEEEccCCCEEEE
Q psy11412        113 QMFQLSLDGKRIYV  126 (290)
Q Consensus       113 r~vafsPdG~~lYv  126 (290)
                      +.++|+|.++.-.+
T Consensus       445 ~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  445 RSVAWNPLSDLCVL  458 (733)
T ss_pred             EEEEecCCCCceeE
Confidence            77888888765433

>KOG0646|consensus

Probab=96.97  E-value=0.012  Score=56.59  Aligned_cols=125  Identities=18%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEcc
Q psy11412         40 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  119 (290)
Q Consensus        40 ~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsP  119 (290)
                      +.+-..+||++.. +.++++||+.-   ..++..+...                                ..+..++++|
T Consensus       184 ~Gg~~~rl~TaS~-D~t~k~wdlS~---g~LLlti~fp--------------------------------~si~av~lDp  227 (476)
T KOG0646|consen  184 SGGTNARLYTASE-DRTIKLWDLSL---GVLLLTITFP--------------------------------SSIKAVALDP  227 (476)
T ss_pred             CCCccceEEEecC-CceEEEEEecc---ceeeEEEecC--------------------------------CcceeEEEcc
Confidence            3334678998876 78999999965   3444333221                                4567799999


Q ss_pred             CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeC
Q psy11412        120 DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNW  199 (290)
Q Consensus       120 dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r  199 (290)
                      .++++|+.++.+..+-..++.......+..  .....+  ..+  .++.  ..|.  .......-+++|-||..|...+ 
T Consensus       228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~--~k~~~~--~~t--~~~~--~~Gh--~~~~~ITcLais~DgtlLlSGd-  296 (476)
T KOG0646|consen  228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVN--QKGRHE--ENT--QINV--LVGH--ENESAITCLAISTDGTLLLSGD-  296 (476)
T ss_pred             cccEEEecCCcceEEeeehhcCCccccccc--cccccc--ccc--eeee--eccc--cCCcceeEEEEecCccEEEeeC-
Confidence            999999988743322111110000000000  000000  000  0000  0010  0012567789999999988777 


Q ss_pred             CCCcEEEEEecC
Q psy11412        200 MHGDIRQYDIRD  211 (290)
Q Consensus       200 ~~~~V~v~Dv~d  211 (290)
                      .+|.|.|||+..
T Consensus       297 ~dg~VcvWdi~S  308 (476)
T KOG0646|consen  297 EDGKVCVWDIYS  308 (476)
T ss_pred             CCCCEEEEecch
Confidence            799999999964

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.97  E-value=0.031  Score=54.26  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=42.4

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      +....|..+||||.+.|+|.-..                +-.+++..    ..++.+.        .++-....++.+||
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~e----------------l~vididn----gnv~~id--------kS~~~lItdf~~~~  453 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFE----------------LWVIDIDN----GNVRLID--------KSEYGLITDFDWHP  453 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceE----------------EEEEEecC----CCeeEec--------ccccceeEEEEEcC
Confidence            45677999999999999886111                11122211    0011000        11223566799999


Q ss_pred             CCCEEEEEeC---CCCcEEEEEec
Q psy11412        190 DDRYLYTSNW---MHGDIRQYDIR  210 (290)
Q Consensus       190 DGr~Lyvs~r---~~~~V~v~Dv~  210 (290)
                      ++|+++-+--   -...|.++|+.
T Consensus       454 nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         454 NSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CceeEEEecCcceeeeeEEEEecC
Confidence            9999764321   23578888874

>KOG3881|consensus

Probab=96.95  E-value=0.011  Score=55.84  Aligned_cols=130  Identities=18%  Similarity=0.231  Sum_probs=79.9

Q ss_pred             CCCCceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         30 KVPAMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        30 ~v~~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      .||-++.++.|-++  .+.++++. .-+.|++||.....+|.  .++...                              
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV--~~fd~~------------------------------  246 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPV--AQFDFL------------------------------  246 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEe-cceeEEEecCcccCcce--eEeccc------------------------------
Confidence            36668888998877  66665544 46899999987544433  223221                              


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                       -....++++.|+|+++|++|...                .+..+|...   ...+..    ...+  +  .+.+++|+.
T Consensus       247 -E~~is~~~l~p~gn~Iy~gn~~g----------------~l~~FD~r~---~kl~g~----~~kg--~--tGsirsih~  298 (412)
T KOG3881|consen  247 -ENPISSTGLTPSGNFIYTGNTKG----------------QLAKFDLRG---GKLLGC----GLKG--I--TGSIRSIHC  298 (412)
T ss_pred             -cCcceeeeecCCCcEEEEecccc----------------hhheecccC---ceeecc----ccCC--c--cCCcceEEE
Confidence             03456799999999999987621                222233211   111110    0111  0  135788999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                      +|.+++|.... .+.-|+|+|+..   .+++..+.++
T Consensus       299 hp~~~~las~G-LDRyvRIhD~kt---rkll~kvYvK  331 (412)
T KOG3881|consen  299 HPTHPVLASCG-LDRYVRIHDIKT---RKLLHKVYVK  331 (412)
T ss_pred             cCCCceEEeec-cceeEEEeeccc---chhhhhhhhh
Confidence            99999987666 788999999953   3444444443

>KOG1063|consensus

Probab=96.93  E-value=0.008  Score=60.28  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCC----CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         35 VTDILISLDDRYLYTSNWMH----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~----g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      +..+++||+|..|+++|-..    -.|++|+...--....+   . ++.                              =
T Consensus       528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L---~-~Hs------------------------------L  573 (764)
T KOG1063|consen  528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL---E-GHS------------------------------L  573 (764)
T ss_pred             EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee---c-ccc------------------------------e
Confidence            55799999999999998653    34888886541111111   1 111                              1


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ...+|+||||||+|..++. +.+|.++...+    +..    +-.+      .+...         +...-.-+..++||
T Consensus       574 TVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~----~~~----~e~~------fa~~k---------~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  574 TVTRLAFSPDGRYLLSVSR-DRTVSLYEVQE----DIK----DEFR------FACLK---------AHTRIIWDCSWSPD  629 (764)
T ss_pred             EEEEEEECCCCcEEEEeec-CceEEeeeeec----ccc----hhhh------hcccc---------ccceEEEEcccCcc
Confidence            5678999999999998775 23333321110    000    0000      00000         00112334679999


Q ss_pred             CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +++++++.| |.+|.||.+.+
T Consensus       630 e~~FaTaSR-DK~VkVW~~~~  649 (764)
T KOG1063|consen  630 EKYFATASR-DKKVKVWEEPD  649 (764)
T ss_pred             cceeEEecC-CceEEEEeccC
Confidence            999888885 77899999865

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.93  E-value=0.14  Score=46.73  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF  222 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~  222 (290)
                      ....-|.+||||+.|.+.- .+|+|++|++-.   .++.+.+.
T Consensus       230 d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPs---L~~~~~W~  268 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIH-FSGSLSLWEIPS---LRLQRSWK  268 (282)
T ss_pred             CceEEEEECCCCCEEEEEE-cCCeEEEEecCc---chhhcccc
Confidence            4678899999999998777 799999999943   34444443

>KOG0295|consensus

Probab=96.91  E-value=0.019  Score=53.76  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=42.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+.|=|-|.++.++.. +.+|..|+++.   +-.+.++. +                     ++         .-.|
T Consensus       195 ~vS~V~f~P~gd~ilS~sr-D~tik~We~~t---g~cv~t~~-~---------------------h~---------ewvr  239 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSR-DNTIKAWECDT---GYCVKTFP-G---------------------HS---------EWVR  239 (406)
T ss_pred             ceeeEEEEecCCeeeeccc-ccceeEEeccc---ceeEEecc-C---------------------ch---------HhEE
Confidence            4557889999999987665 88999999975   23333221 1                     11         4789


Q ss_pred             EEEEccCCCEEEEEc
Q psy11412        114 MFQLSLDGKRIYVSS  128 (290)
Q Consensus       114 ~vafsPdG~~lYv~n  128 (290)
                      ++..+.||..+...+
T Consensus       240 ~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  240 MVRVNQDGTIIASCS  254 (406)
T ss_pred             EEEecCCeeEEEecC
Confidence            999999998777544

>KOG2315|consensus

Probab=96.90  E-value=0.017  Score=56.68  Aligned_cols=57  Identities=14%  Similarity=0.363  Sum_probs=45.2

Q ss_pred             EEEEccCCCEEEEEeCCC--CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcce
Q psy11412        184 DILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  261 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r~~--~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~  261 (290)
                      .+-|||-|+.|..+++|+  |.+.|||+.+   .+.|..+.+-+                                 ---
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~~---------------------------------tt~  359 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAAN---------------------------------TTV  359 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccCC---------------------------------ceE
Confidence            478999999999999886  9999999975   46666554433                                 233


Q ss_pred             EEEccCCCEEEEEcC
Q psy11412        262 FQLSLDGKRIYVSSS  276 (290)
Q Consensus       262 ~a~sPDG~~L~Van~  276 (290)
                      +.++|||.++++|.-
T Consensus       360 ~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATT  374 (566)
T ss_pred             EEEcCCCcEEEEEec
Confidence            899999999999854

>KOG2111|consensus

Probab=96.88  E-value=0.082  Score=48.88  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=51.7

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      +....|+++-+|..++.+++               .|..+-+++..+   ...+...-+    |   ......+.|+|||
T Consensus       182 s~Iacv~Ln~~Gt~vATaSt---------------kGTLIRIFdt~~---g~~l~E~RR----G---~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATAST---------------KGTLIRIFDTED---GTLLQELRR----G---VDRADIYCIAFSP  236 (346)
T ss_pred             CceeEEEEcCCccEEEEecc---------------CcEEEEEEEcCC---CcEeeeeec----C---CchheEEEEEeCC
Confidence            45677999999999998776               233222233332   112221111    1   1235688899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      |+.+|.|+. ..++|.+|.+.++
T Consensus       237 ~~s~LavsS-dKgTlHiF~l~~~  258 (346)
T KOG2111|consen  237 NSSWLAVSS-DKGTLHIFSLRDT  258 (346)
T ss_pred             CccEEEEEc-CCCeEEEEEeecC
Confidence            999999998 7899999999763

>KOG4378|consensus

Probab=96.86  E-value=0.019  Score=55.93  Aligned_cols=118  Identities=17%  Similarity=0.262  Sum_probs=75.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +..+..+-+||--|+|.+.....|.|++||+.. ..|..-  +.-.                     |.         ..
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~--~~~~---------------------Hs---------AP  210 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFH--ASEA---------------------HS---------AP  210 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccc--hhhh---------------------cc---------CC
Confidence            346779999999999999988899999999853 222211  0000                     00         23


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      -++|.|+|....|+|+-.+..               .+...|...   ++...++        +..  ..-..++|+++|
T Consensus       211 ~~gicfspsne~l~vsVG~Dk---------------ki~~yD~~s---~~s~~~l--------~y~--~Plstvaf~~~G  262 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDK---------------KINIYDIRS---QASTDRL--------TYS--HPLSTVAFSECG  262 (673)
T ss_pred             cCcceecCCccceEEEecccc---------------eEEEeeccc---cccccee--------eec--CCcceeeecCCc
Confidence            367999999999998755322               222122211   1111110        011  113469999999


Q ss_pred             CEEEEEeCCCCcEEEEEecC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      .+|.+.+ ..+.|..||+.-
T Consensus       263 ~~L~aG~-s~G~~i~YD~R~  281 (673)
T KOG4378|consen  263 TYLCAGN-SKGELIAYDMRS  281 (673)
T ss_pred             eEEEeec-CCceEEEEeccc
Confidence            9999888 789999999954

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.017  Score=56.16  Aligned_cols=18  Identities=33%  Similarity=0.287  Sum_probs=14.3

Q ss_pred             eEEEEccCCCEEEEEcCC
Q psy11412        113 QMFQLSLDGKRIYVSSSL  130 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel  130 (290)
                      .+-+|||||++|..+.+-
T Consensus       241 ~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             CCccCCCCCCEEEEEECC
Confidence            345799999999988763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.051  Score=50.63  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             EEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         37 DILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        37 ~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      +-.+.+++..||.++-..+.|+-|+-.+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~   56 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPET   56 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCc
Confidence            3456789999999999899999888653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.70  E-value=0.094  Score=47.68  Aligned_cols=186  Identities=20%  Similarity=0.277  Sum_probs=99.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCCC--ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPA--MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~--~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      .-+.+|++.+++....   +++.  .-.++++-  +..||.=.|-++...+||..+   .+.+.++...           
T Consensus        69 ~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t---l~~~~~~~y~-----------  129 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSV---PLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT---LKKIGTFPYP-----------  129 (264)
T ss_dssp             EEEEEETTTSSEEEEE---E-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT---TEEEEEEE-S-----------
T ss_pred             EEEEEECCCCcEEEEE---ECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc---ceEEEEEecC-----------
Confidence            4566788888877665   5665  44466665  567888889999999999754   5666554332           


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                                           +.-.+++  .||+.||+++...                .+..+|..+|...+.+.   .
T Consensus       130 ---------------------~EGWGLt--~dg~~Li~SDGS~----------------~L~~~dP~~f~~~~~i~---V  167 (264)
T PF05096_consen  130 ---------------------GEGWGLT--SDGKRLIMSDGSS----------------RLYFLDPETFKEVRTIQ---V  167 (264)
T ss_dssp             ---------------------SS--EEE--ECSSCEEEE-SSS----------------EEEEE-TTT-SEEEEEE----
T ss_pred             ---------------------CcceEEE--cCCCEEEEECCcc----------------ceEEECCcccceEEEEE---E
Confidence                                 2345666  7889999987621                11111211111111111   0


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV  248 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~  248 (290)
                      . ..+  .|. ....++-.- || .+|+-.|..+.|..+|.   .+.++++.+...+......      . +....|.  
T Consensus       168 ~-~~g--~pv-~~LNELE~i-~G-~IyANVW~td~I~~Idp---~tG~V~~~iDls~L~~~~~------~-~~~~~~~--  229 (264)
T PF05096_consen  168 T-DNG--RPV-SNLNELEYI-NG-KIYANVWQTDRIVRIDP---ETGKVVGWIDLSGLRPEVG------R-DKSRQPD--  229 (264)
T ss_dssp             E-ETT--EE----EEEEEEE-TT-EEEEEETTSSEEEEEET---TT-BEEEEEE-HHHHHHHT------S-TTST--T--
T ss_pred             E-ECC--EEC-CCcEeEEEE-cC-EEEEEeCCCCeEEEEeC---CCCeEEEEEEhhHhhhccc------c-ccccccc--
Confidence            0 000  011 123333332 55 78999999999988765   4567777776654211000      0 0000000  


Q ss_pred             eeecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412        249 IIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI  285 (290)
Q Consensus       249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~  285 (290)
                             .+--++||+.|++++|||+.   +.|.+.|
T Consensus       230 -------~dVLNGIAyd~~~~~l~vTG---K~Wp~ly  256 (264)
T PF05096_consen  230 -------DDVLNGIAYDPETDRLFVTG---KLWPKLY  256 (264)
T ss_dssp             -------TS-EEEEEEETTTTEEEEEE---TT-SEEE
T ss_pred             -------CCeeEeEeEeCCCCEEEEEe---CCCCceE
Confidence                   11358999999999999985   5676654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1963|consensus

Probab=96.69  E-value=0.051  Score=55.79  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         36 TDILISLDDRYLYTSNWMHGDIRQYDIRD--TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d--~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...++||.++++++++. +|+|++|.-..  ..... ...+.=+                               -..+.
T Consensus       209 t~~~~spn~~~~Aa~d~-dGrI~vw~d~~~~~~~~t-~t~lHWH-------------------------------~~~V~  255 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDS-DGRILVWRDFGSSDDSET-CTLLHWH-------------------------------HDEVN  255 (792)
T ss_pred             eeEEeccccceEEEecc-CCcEEEEecccccccccc-ceEEEec-------------------------------ccccc
Confidence            45899999999998875 79999997321  11000 0001000                               03566


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++||+||-+||....               . +.+..|+....   + -+-+|+.         ++...+|++|||+..
T Consensus       256 ~L~fS~~G~~LlSGG~---------------E-~VLv~Wq~~T~---~-kqfLPRL---------gs~I~~i~vS~ds~~  306 (792)
T KOG1963|consen  256 SLSFSSDGAYLLSGGR---------------E-GVLVLWQLETG---K-KQFLPRL---------GSPILHIVVSPDSDL  306 (792)
T ss_pred             eeEEecCCceEeeccc---------------c-eEEEEEeecCC---C-ccccccc---------CCeeEEEEEcCCCCe
Confidence            7999999999997432               1 24555554431   1 1111221         245678999999987


Q ss_pred             EEEEeCCCCcEEEEEecCC
Q psy11412        194 LYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      -.+.. .||+|.+....+.
T Consensus       307 ~sl~~-~DNqI~li~~~dl  324 (792)
T KOG1963|consen  307 YSLVL-EDNQIHLIKASDL  324 (792)
T ss_pred             EEEEe-cCceEEEEeccch
Confidence            55565 7999999877653

>KOG0283|consensus

Probab=96.66  E-value=0.042  Score=56.00  Aligned_cols=141  Identities=14%  Similarity=0.132  Sum_probs=85.0

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++=.|+..+|+.+.   .+...+.+++++|||++..+..+ .|..++|+..+. ......+|.....-            
T Consensus       435 RiWsI~d~~Vv~W~---Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~l-k~~~~~~I~~~~~K------------  497 (712)
T KOG0283|consen  435 RLWSISDKKVVDWN---DLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGL-KLVSDFHIRLHNKK------------  497 (712)
T ss_pred             EEeecCcCeeEeeh---hhhhhheeEEeccCCceEEEEEe-ccEEEEEEccCC-eEEEeeeEeeccCc------------
Confidence            45578899999998   67789999999999999999887 789999998752 22222223222100            


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                  . ..+....++.|.|.-. .+.|++.               |. .+-++|..+   ...+.-     +
T Consensus       498 ------------k-~~~~rITG~Q~~p~~~~~vLVTSn---------------DS-rIRI~d~~~---~~lv~K-----f  540 (712)
T KOG0283|consen  498 ------------K-KQGKRITGLQFFPGDPDEVLVTSN---------------DS-RIRIYDGRD---KDLVHK-----F  540 (712)
T ss_pred             ------------c-ccCceeeeeEecCCCCCeEEEecC---------------CC-ceEEEeccc---hhhhhh-----h
Confidence                        0 0113466788886543 3555543               11 222223211   111211     1


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .|. . .........|+.||+++..+. .+..|++|+..
T Consensus       541 KG~-~-n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~  576 (712)
T KOG0283|consen  541 KGF-R-NTSSQISASFSSDGKHIVSAS-EDSWVYIWKND  576 (712)
T ss_pred             ccc-c-cCCcceeeeEccCCCEEEEee-cCceEEEEeCC
Confidence            110 0 011223457999999998887 78899999984

>KOG2919|consensus

Probab=96.62  E-value=0.054  Score=50.33  Aligned_cols=123  Identities=17%  Similarity=0.269  Sum_probs=72.4

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~SpDGr-~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +....++|||-.. .+++..| ...+-+|.-.+. .|  +..  +||                             -++|
T Consensus       208 giisc~a~sP~~~~~~a~gsY-~q~~giy~~~~~-~p--l~l--lgg-----------------------------h~gG  252 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSY-GQRVGIYNDDGR-RP--LQL--LGG-----------------------------HGGG  252 (406)
T ss_pred             ceeeeeeccCCCCcceeeecc-cceeeeEecCCC-Cc--eee--ecc-----------------------------cCCC
Confidence            3566789999877 5555565 568888875432 22  211  111                             0378


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ..|+.|.+||.+||+....              +. .+..||+.-.  +..+-     ..+. .....++---..+.|+|
T Consensus       253 vThL~~~edGn~lfsGaRk--------------~d-kIl~WDiR~~--~~pv~-----~L~r-hv~~TNQRI~FDld~~~  309 (406)
T KOG2919|consen  253 VTHLQWCEDGNKLFSGARK--------------DD-KILCWDIRYS--RDPVY-----ALER-HVGDTNQRILFDLDPKG  309 (406)
T ss_pred             eeeEEeccCcCeecccccC--------------CC-eEEEEeehhc--cchhh-----hhhh-hccCccceEEEecCCCC
Confidence            9999999999999986651              12 3333443210  00010     0000 00001222235678999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAH  214 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~  214 (290)
                      ++|...+ .++.|.+||+.+++.
T Consensus       310 ~~LasG~-tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  310 EILASGD-TDGSVRVWDLKDLGN  331 (406)
T ss_pred             ceeeccC-CCccEEEEecCCCCC
Confidence            9998776 789999999977655

>KOG0647|consensus

Probab=96.59  E-value=0.12  Score=47.68  Aligned_cols=63  Identities=17%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             ceEEEEEcCCCCEEE-EEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLY-TSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Ly-va~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ....|+|||.-..++ .+.| +|+|++|++.+.+.........+                                .+.+
T Consensus        29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~--------------------------------~~Pv   75 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSH--------------------------------DGPV   75 (347)
T ss_pred             chheeEeccccCceEEeccc-CCceEEEEEecCCcccchhhhcc--------------------------------CCCe
Confidence            566899999555555 4455 89999999986432221111101                                1345


Q ss_pred             eEEEEccCCCEEEEEcC
Q psy11412        113 QMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       113 r~vafsPdG~~lYv~ne  129 (290)
                      -.++++.||..+|..+-
T Consensus        76 L~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             EEEEEccCCceEEeecc
Confidence            77999999999998654

>KOG4497|consensus

Probab=96.58  E-value=0.013  Score=54.42  Aligned_cols=129  Identities=13%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC-CceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR-SMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~~~~i~~S  188 (290)
                      .|--.+..|||||.+..++|...               .+.+|....   .+-.           -++-+ ...-+++|+
T Consensus        92 agls~~~WSPdgrhiL~tseF~l---------------riTVWSL~t---~~~~-----------~~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDL---------------RITVWSLNT---QKGY-----------LLPHPKTNVKGYAFH  142 (447)
T ss_pred             CcceeeeECCCcceEeeeeccee---------------EEEEEEecc---ceeE-----------EecccccCceeEEEC
Confidence            35566889999999999888322               222222211   0000           01111 233569999


Q ss_pred             cCCCEEEEEeCCC--CcEEEEEecCCCCceE-----eeEEe-eCceecCCCc-eEEecCCCCCCCCCcceeecccccCCc
Q psy11412        189 LDDRYLYTSNWMH--GDIRQYDIRDTAHPVL-----VGQIF-LGGKIQSDSG-VTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       189 pDGr~Lyvs~r~~--~~V~v~Dv~d~~~~~~-----v~~i~-~Gg~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      |||+|.....|.+  +=|.++.-.   ...+     +.++. +|-..++||+ +.|+|..-.      -.+-...-|=+.
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~---~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le------ykv~aYe~~lG~  213 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCK---AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE------YKVYAYERGLGL  213 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhH---HHHHHHhcCCCcccccCceECCCCcEEEEecchhh------heeeeeeeccce
Confidence            9999999888765  222222110   0111     12222 3445566666 667874321      000011112256


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      -.+.+||-+++|+|...
T Consensus       214 k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  214 KFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             eEEEeccccceEEeecc
Confidence            77999999999999854

>KOG0264|consensus

Probab=96.57  E-value=0.061  Score=51.49  Aligned_cols=128  Identities=10%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+-.+.++|+|=+.+|++++..+++|.+||+++...+  +-.+ .++                              ...
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--lh~~-e~H------------------------------~de  318 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--LHTF-EGH------------------------------EDE  318 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--ceec-cCC------------------------------Ccc
Confidence            5567899999999999989888999999999874321  1110 110                              145


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc----cCcc-ccCccccCCCCceeEEE
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS----MPLS-SLGSWKYPARSMVTDIL  186 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~----~p~~-~~~~~~~~~~~~~~~i~  186 (290)
                      ...+.|||+...+..++...               +.+.+||....-..+.-..    .|.. ...+   .....+.++.
T Consensus       319 v~~V~WSPh~etvLASSg~D---------------~rl~vWDls~ig~eq~~eda~dgppEllF~Hg---GH~~kV~Dfs  380 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTD---------------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG---GHTAKVSDFS  380 (422)
T ss_pred             eEEEEeCCCCCceeEecccC---------------CcEEEEeccccccccChhhhccCCcceeEEec---Cccccccccc
Confidence            67799999999888776522               2333344322111110000    0000 0001   0113577889


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEec
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..|...++.+|...+|.+.||..+
T Consensus       381 Wnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  381 WNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCCCeEEEEecCCceEEEeecc
Confidence            999999999999889999999886

>KOG0305|consensus

Probab=96.55  E-value=0.056  Score=53.17  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ...++.+..+++|++|++... +|.|.+||+..
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~-~g~v~iwD~~~  248 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTS-DGTVQIWDVKE  248 (484)
T ss_pred             CCceEEEEECCCCCEEEEeec-CCeEEEEehhh
Confidence            457899999999999998875 89999999865

>KOG1445|consensus

Probab=96.54  E-value=0.012  Score=58.72  Aligned_cols=61  Identities=21%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             CceeEEEEccCC-CEEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412        180 SMVTDILISLDD-RYLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  257 (290)
Q Consensus       180 ~~~~~i~~SpDG-r~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (290)
                      ...+.+.|+|=. ..|.++. .+.+|.+||+.+.. ..+++     |.                              .+
T Consensus       678 eKI~slRfHPLAadvLa~as-yd~Ti~lWDl~~~~~~~~l~-----gH------------------------------td  721 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVAS-YDSTIELWDLANAKLYSRLV-----GH------------------------------TD  721 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhh-ccceeeeeehhhhhhhheec-----cC------------------------------cC
Confidence            357788999943 3455555 78999999996421 11122     22                              12


Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      +..++++||||++++..+.
T Consensus       722 qIf~~AWSpdGr~~AtVcK  740 (1012)
T KOG1445|consen  722 QIFGIAWSPDGRRIATVCK  740 (1012)
T ss_pred             ceeEEEECCCCcceeeeec
Confidence            5778999999999887765

>KOG0308|consensus

Probab=96.52  E-value=0.083  Score=52.97  Aligned_cols=133  Identities=20%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ++-.++.-.....|++++.-++.|.+||+..+.. +.+.+.         +.+.+   ..+...          .-.+..
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~-~l~~s~---------n~~t~---~sl~sG----------~k~siY  175 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA-TLVASF---------NNVTV---NSLGSG----------PKDSIY  175 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcch-hhhhhc---------ccccc---ccCCCC----------Ccccee
Confidence            6778887445566666666689999999975321 122110         00000   000000          013456


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++..+.| ++.|+...                  ...+.+.|......+-.     ..|    ....+..+.+++||++
T Consensus       176 SLA~N~t~-t~ivsGgt------------------ek~lr~wDprt~~kimk-----LrG----HTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  176 SLAMNQTG-TIIVSGGT------------------EKDLRLWDPRTCKKIMK-----LRG----HTDNVRVLLVNDDGTR  227 (735)
T ss_pred             eeecCCcc-eEEEecCc------------------ccceEEeccccccceee-----eec----cccceEEEEEcCCCCe
Confidence            68888888 55554431                  11123333322222111     011    1245788999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQI  221 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i  221 (290)
                      +..+. .+++|.+||+.   ..+-+.++
T Consensus       228 ~ls~s-SDgtIrlWdLg---qQrCl~T~  251 (735)
T KOG0308|consen  228 LLSAS-SDGTIRLWDLG---QQRCLATY  251 (735)
T ss_pred             EeecC-CCceEEeeecc---ccceeeeE
Confidence            98777 79999999984   23444443

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=96.51  E-value=0.0074  Score=39.32  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=28.4

Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      -.|.++|+++ .++.+.++||++|.+|++++++.+
T Consensus         9 v~g~yaYva~-~~~Gl~IvDISnPs~P~~v~~~~T   42 (42)
T PF08309_consen    9 VSGNYAYVAD-GNNGLVIVDISNPSNPVLVGSYDT   42 (42)
T ss_pred             EECCEEEEEe-CCCCEEEEECCCCCCCEEEEEecC
Confidence            3578999998 566789999999999999987653

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>KOG0268|consensus

Probab=96.48  E-value=0.017  Score=54.20  Aligned_cols=115  Identities=12%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ..+.+.|+|-...+.+++..+++|.+||.... .  .+..+-++                                ..+.
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~-~--Pl~KVi~~--------------------------------mRTN  233 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQA-S--PLKKVILT--------------------------------MRTN  233 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccC-C--ccceeeee--------------------------------cccc
Confidence            45789999999999999888999999998652 1  22222221                                4667


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .|+|+|.+-.+.++||..+.   +.             .|...+      . .|.....+    ..+.+.++.|||-|+.
T Consensus       234 ~IswnPeafnF~~a~ED~nl---Y~-------------~DmR~l------~-~p~~v~~d----hvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNL---YT-------------YDMRNL------S-RPLNVHKD----HVSAVMDVDFSPTGQE  286 (433)
T ss_pred             ceecCccccceeeccccccc---ee-------------hhhhhh------c-ccchhhcc----cceeEEEeccCCCcch
Confidence            79999966666666662221   11             111110      0 01110011    1246778999999999


Q ss_pred             EEEEeCCCCcEEEEEecC
Q psy11412        194 LYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ...+. .+.+|.+|-+..
T Consensus       287 fvsgs-yDksIRIf~~~~  303 (433)
T KOG0268|consen  287 FVSGS-YDKSIRIFPVNH  303 (433)
T ss_pred             hcccc-ccceEEEeecCC
Confidence            66555 789999998843

>KOG1408|consensus

Probab=96.46  E-value=0.034  Score=56.36  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             CCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC-CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCC
Q psy11412         19 AKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ   97 (290)
Q Consensus        19 ~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~-~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~   97 (290)
                      ++..|.++ ...-......+|||++|||+++.-. -.-.++||++...+   +++++ ..+                   
T Consensus        66 ~~~tQ~hl-vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~---vVAEf-vdH-------------------  121 (1080)
T KOG1408|consen   66 DSCTQSHL-VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG---VVAEF-VDH-------------------  121 (1080)
T ss_pred             cccchhhe-ecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc---chhhh-hhc-------------------
Confidence            44555554 1111224568999999999976532 35679999986532   22211 011                   


Q ss_pred             CCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC
Q psy11412         98 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP  177 (290)
Q Consensus        98 ~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~  177 (290)
                               .  =+...++|+|.+|++..+..   +-|.           .   +++.+-.....++.   .     .  
T Consensus       122 ---------K--Y~vtcvaFsp~~kyvvSVGs---QHDM-----------I---Vnv~dWr~N~~~as---n-----k--  163 (1080)
T KOG1408|consen  122 ---------K--YNVTCVAFSPGNKYVVSVGS---QHDM-----------I---VNVNDWRVNSSGAS---N-----K--  163 (1080)
T ss_pred             ---------c--ccceeeeecCCCcEEEeecc---ccce-----------E---EEhhhhhhcccccc---c-----c--
Confidence                     1  25677999999997775433   1110           1   12211000000000   0     0  


Q ss_pred             CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        178 ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       178 ~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      -...++.++||.||.+..++  ++..|..|-+..
T Consensus       164 iss~Vsav~fsEdgSYfvT~--gnrHvk~wyl~~  195 (1080)
T KOG1408|consen  164 ISSVVSAVAFSEDGSYFVTS--GNRHVKLWYLQI  195 (1080)
T ss_pred             cceeEEEEEEccCCceeeee--eeeeEEEEEeec
Confidence            01346789999999986554  456799998854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.43  E-value=0.4  Score=43.24  Aligned_cols=30  Identities=13%  Similarity=0.028  Sum_probs=22.4

Q ss_pred             ceeEEEEccCCCEEEEEeC--CCCcEEEEEec
Q psy11412        181 MVTDILISLDDRYLYTSNW--MHGDIRQYDIR  210 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~  210 (290)
                      ...++++||||.++.+-.+  +.+.|.|--|.
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            5778999999999886552  34677776664

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0303|consensus

Probab=96.42  E-value=0.056  Score=51.33  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeee--EE-eecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QI-FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~--~i-~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .+..+++.|-+..+.+++..+-+|.||.+.+.+.-..+.  .+ ..|+                              ..
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH------------------------------~r  132 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH------------------------------QR  132 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec------------------------------ce
Confidence            445789999988888888888999999997643222111  00 1111                              13


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+-++++||-..-+..+..               .+..+.+|++..-   ..+.          .+..+...+.+.|+.|
T Consensus       133 rVg~V~wHPtA~NVLlsag---------------~Dn~v~iWnv~tg---eali----------~l~hpd~i~S~sfn~d  184 (472)
T KOG0303|consen  133 RVGLVQWHPTAPNVLLSAG---------------SDNTVSIWNVGTG---EALI----------TLDHPDMVYSMSFNRD  184 (472)
T ss_pred             eEEEEeecccchhhHhhcc---------------CCceEEEEeccCC---ceee----------ecCCCCeEEEEEeccC
Confidence            4567888987655444333               1224444554321   1111          1223457889999999


Q ss_pred             CCEEEEEeCCCCcEEEEEe
Q psy11412        191 DRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv  209 (290)
                      |..|.+++ .+..|+|||.
T Consensus       185 Gs~l~Ttc-kDKkvRv~dp  202 (472)
T KOG0303|consen  185 GSLLCTTC-KDKKVRVIDP  202 (472)
T ss_pred             Cceeeeec-ccceeEEEcC
Confidence            99999999 4778999976

>KOG0299|consensus

Probab=96.31  E-value=0.043  Score=52.79  Aligned_cols=127  Identities=15%  Similarity=0.261  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCce-eeeE---EeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-LVGQ---IFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~-~~~~---i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+++++++||++++|.+.- +++|.-|++......+ .+..   ....+               +...+.    ...+ -
T Consensus       144 s~~~vals~d~~~~fsask-~g~i~kw~v~tgk~~~~i~~~~ev~k~~~---------------~~~k~~----r~~h-~  202 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASK-DGTILKWDVLTGKKDRYIIERDEVLKSHG---------------NPLKES----RKGH-V  202 (479)
T ss_pred             cceEEEeeccccceeecCC-CcceeeeehhcCcccccccccchhhhhcc---------------CCCCcc----cccc-c
Confidence            6789999999999998875 7899999986532211 1111   00000               000000    0000 1


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~S  188 (290)
                      ...-.+++|+|||+|.....                +..+.+|+..+   ...+..          +++ ...+..++|-
T Consensus       203 keil~~avS~Dgkylatgg~----------------d~~v~Iw~~~t---~ehv~~----------~~ghr~~V~~L~fr  253 (479)
T KOG0299|consen  203 KEILTLAVSSDGKYLATGGR----------------DRHVQIWDCDT---LEHVKV----------FKGHRGAVSSLAFR  253 (479)
T ss_pred             ceeEEEEEcCCCcEEEecCC----------------CceEEEecCcc---cchhhc----------ccccccceeeeeee
Confidence            33445899999998886432                22333344433   222221          112 2356678887


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      -.=..||++. .+.+|.+|++..
T Consensus       254 ~gt~~lys~s-~Drsvkvw~~~~  275 (479)
T KOG0299|consen  254 KGTSELYSAS-ADRSVKVWSIDQ  275 (479)
T ss_pred             cCccceeeee-cCCceEEEehhH
Confidence            7777899988 788999999964

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.29  E-value=0.083  Score=51.45  Aligned_cols=32  Identities=19%  Similarity=-0.002  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeE--EEEEcC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDI--RQYDIR   63 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V--~v~dv~   63 (290)
                      .+.-..-+|||||++|+.+...+|..  .++|+.
T Consensus       237 ~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         237 NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            33444668999999999886666664  445553

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.23  E-value=0.1  Score=47.68  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +..|+.|+.+|||..-|.+.. .+.|--.|   +...+. .++.+|                              .|+.
T Consensus        61 G~ap~dvapapdG~VWft~qg-~gaiGhLd---P~tGev-~~ypLg------------------------------~Ga~  105 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQG-TGAIGHLD---PATGEV-ETYPLG------------------------------SGAS  105 (353)
T ss_pred             CCCccccccCCCCceEEecCc-cccceecC---CCCCce-EEEecC------------------------------CCCC
Confidence            448899999999988887654 55654333   232322 223333                              2578


Q ss_pred             ceEEEEccCCCEEEEEcC
Q psy11412        112 SQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~ne  129 (290)
                      |+.|...|||.. +++.+
T Consensus       106 Phgiv~gpdg~~-Witd~  122 (353)
T COG4257         106 PHGIVVGPDGSA-WITDT  122 (353)
T ss_pred             CceEEECCCCCe-eEecC
Confidence            999999999974 44544

>KOG1009|consensus

Probab=96.22  E-value=0.064  Score=50.96  Aligned_cols=30  Identities=20%  Similarity=0.457  Sum_probs=26.7

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..+++++.+||+.+|.++. .+|++.+||+.
T Consensus       124 ~diydL~Ws~d~~~l~s~s-~dns~~l~Dv~  153 (434)
T KOG1009|consen  124 DDIYDLAWSPDSNFLVSGS-VDNSVRLWDVH  153 (434)
T ss_pred             cchhhhhccCCCceeeeee-ccceEEEEEec
Confidence            4688999999999998777 89999999995

>KOG0295|consensus

Probab=96.19  E-value=0.052  Score=50.95  Aligned_cols=32  Identities=16%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             CCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        179 RSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       179 ~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      .+++.+++|||-||||+... .+.++.+||+.+
T Consensus       334 dnwVr~~af~p~Gkyi~Sca-DDktlrvwdl~~  365 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCA-DDKTLRVWDLKN  365 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEe-cCCcEEEEEecc
Confidence            36889999999999986444 799999999964

>KOG1036|consensus

Probab=96.17  E-value=0.16  Score=46.84  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcce
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  261 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~  261 (290)
                      +.+|+|+|==.+|++++ .+|-|.+||+-...+.+.+...+                                  ...-.
T Consensus       235 VNai~Fhp~~~tfaTgG-sDG~V~~Wd~~~rKrl~q~~~~~----------------------------------~SI~s  279 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGG-SDGIVNIWDLFNRKRLKQLAKYE----------------------------------TSISS  279 (323)
T ss_pred             eceeEeccccceEEecC-CCceEEEccCcchhhhhhccCCC----------------------------------CceEE
Confidence            56799999988888877 79999999986432222222111                                  13566


Q ss_pred             EEEccCCCEEEEEcC
Q psy11412        262 FQLSLDGKRIYVSSS  276 (290)
Q Consensus       262 ~a~sPDG~~L~Van~  276 (290)
                      ++|+-||..|++|.+
T Consensus       280 lsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  280 LSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeccCCCeEEEEec
Confidence            999999999999987

>KOG0321|consensus

Probab=96.16  E-value=0.21  Score=50.04  Aligned_cols=129  Identities=12%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      +.+..|..+|++++..++.|.|||+......-..+.....+.              .+.        ..+ --|--.+.+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~--------------~t~--------skr-s~G~~nL~l  279 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY--------------PTH--------SKR-SVGQVNLIL  279 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc--------------cCc--------ccc-eeeeEEEEe
Confidence            567789999999988899999999976432211110000000              000        000 024556778


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      +..|.+||+... ++.|  ++|             ++...      ...|...+.+- +-..-.... .+||||.+|..+
T Consensus       280 DssGt~L~AsCt-D~sI--y~y-------------nm~s~------s~sP~~~~sg~-~~~sf~vks-~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  280 DSSGTYLFASCT-DNSI--YFY-------------NMRSL------SISPVAEFSGK-LNSSFYVKS-ELSPDDCSLLSG  335 (720)
T ss_pred             cCCCCeEEEEec-CCcE--EEE-------------ecccc------CcCchhhccCc-ccceeeeee-ecCCCCceEecc
Confidence            888999998765 2211  112             11110      00011111110 000012222 489999999877


Q ss_pred             eCCCCcEEEEEecCCCC
Q psy11412        198 NWMHGDIRQYDIRDTAH  214 (290)
Q Consensus       198 ~r~~~~V~v~Dv~d~~~  214 (290)
                      . .+...++|-|..+..
T Consensus       336 S-sd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  336 S-SDEQAYIWVVSSPEA  351 (720)
T ss_pred             C-CCcceeeeeecCccC
Confidence            6 567889999976543

>KOG2315|consensus

Probab=96.13  E-value=0.14  Score=50.52  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=72.9

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISLDDRYLYTS-NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva-~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +-+|++.++|+|+-..|. ++.--++.+||+.-    .++-.                                  .+.|
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~d----------------------------------f~eg  312 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFD----------------------------------FPEG  312 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEe----------------------------------CCCC
Confidence            357789999999866554 66677899998742    11211                                  1257


Q ss_pred             ceE-EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        112 SQM-FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~-vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ||. +-|+|.|+++.++.= ++            --+.+.+||+.+   ++.+..+-           .....-...|||
T Consensus       313 pRN~~~fnp~g~ii~lAGF-GN------------L~G~mEvwDv~n---~K~i~~~~-----------a~~tt~~eW~Pd  365 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGF-GN------------LPGDMEVWDVPN---RKLIAKFK-----------AANTTVFEWSPD  365 (566)
T ss_pred             CccceEECCCCCEEEEeec-CC------------CCCceEEEeccc---hhhccccc-----------cCCceEEEEcCC
Confidence            766 669999999988742 11            122455566654   33343211           122344789999


Q ss_pred             CCEEEEEeC-----CCCcEEEEEec
Q psy11412        191 DRYLYTSNW-----MHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r-----~~~~V~v~Dv~  210 (290)
                      |++++++.-     -+|.+.+|+.+
T Consensus       366 Ge~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  366 GEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CcEEEEEeccccEEecCCeEEEEec
Confidence            999998653     37999999995

>KOG2321|consensus

Probab=96.09  E-value=0.89  Score=45.36  Aligned_cols=100  Identities=18%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeE------------EeeCce--e-cCC-CceEEecCCCCCCC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ------------IFLGGK--I-QSD-SGVTVIDDPELDKQ  244 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~------------i~~Gg~--~-~~~-~~v~~~~~~~~~~~  244 (290)
                      .+++|.|+-||-.+.|.. .+|.|.+||+.. ..+.++..            ++.+.+  + +.| ..+.+||.-+-.  
T Consensus       230 svTal~F~d~gL~~aVGt-s~G~v~iyDLRa-~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk--  305 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGT-STGSVLIYDLRA-SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK--  305 (703)
T ss_pred             cceEEEecCCceeEEeec-cCCcEEEEEccc-CCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC--
Confidence            588999999999999988 689999999953 22332221            111100  0 111 112333311100  


Q ss_pred             CCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCcccCCCC
Q psy11412        245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL  289 (290)
Q Consensus       245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~~~~~  289 (290)
                      |-    .-+-.....+++.+=|++..+|.||.. +..+.-|-|.|
T Consensus       306 ~~----asiEpt~~lND~C~~p~sGm~f~Ane~-~~m~~yyiP~L  345 (703)
T KOG2321|consen  306 PM----ASIEPTSDLNDFCFVPGSGMFFTANES-SKMHTYYIPSL  345 (703)
T ss_pred             ce----eeccccCCcCceeeecCCceEEEecCC-CcceeEEcccc
Confidence            00    000001136899999999999999983 44555555655

>KOG1034|consensus

Probab=96.07  E-value=0.35  Score=45.12  Aligned_cols=91  Identities=26%  Similarity=0.323  Sum_probs=61.8

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV   86 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~   86 (290)
                      |.--.-+|||....+...+.  ...+.....|-+-|+.-.|..+...+-+|++|++++.   ..+..  .||.       
T Consensus       112 G~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~---~Cv~V--fGG~-------  177 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---VCVAV--FGGV-------  177 (385)
T ss_pred             cceeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC---eEEEE--eccc-------
Confidence            33334578888877777664  3457788899999999888888888999999999763   33321  1221       


Q ss_pred             EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCC
Q psy11412         87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF  131 (290)
Q Consensus        87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~  131 (290)
                                       .+++  ..+-.+-||++|+++. +..++
T Consensus       178 -----------------egHr--deVLSvD~~~~gd~i~-ScGmD  202 (385)
T KOG1034|consen  178 -----------------EGHR--DEVLSVDFSLDGDRIA-SCGMD  202 (385)
T ss_pred             -----------------cccc--CcEEEEEEcCCCCeee-ccCCc
Confidence                             0111  4567789999999665 34443

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=95.98  E-value=0.043  Score=35.70  Aligned_cols=38  Identities=26%  Similarity=0.512  Sum_probs=30.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI   74 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i   74 (290)
                      ...++++  .|.++|+++. .+.+.++|++++..|+.++++
T Consensus         3 ~a~~v~v--~g~yaYva~~-~~Gl~IvDISnPs~P~~v~~~   40 (42)
T PF08309_consen    3 DARDVAV--SGNYAYVADG-NNGLVIVDISNPSNPVLVGSY   40 (42)
T ss_pred             eEEEEEE--ECCEEEEEeC-CCCEEEEECCCCCCCEEEEEe
Confidence            4556665  4889999986 467999999999999988754

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.93  E-value=0.46  Score=48.24  Aligned_cols=27  Identities=11%  Similarity=0.060  Sum_probs=20.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      .+.++.+||||++|++..  .++|.+--|
T Consensus       449 ~Issl~wSpDG~RiA~i~--~g~v~Va~V  475 (591)
T PRK13616        449 PISELQLSRDGVRAAMII--GGKVYLAVV  475 (591)
T ss_pred             CcCeEEECCCCCEEEEEE--CCEEEEEEE
Confidence            467899999999998766  356766444

>KOG4328|consensus

Probab=95.90  E-value=0.11  Score=50.24  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+++|--.++..+..+..               +..+||...+..+..    |.  +  ..++....+.+..|||+
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~---------------T~kIWD~R~l~~K~s----p~--l--st~~HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQ---------------TAKIWDLRQLRGKAS----PF--L--STLPHRRSVNSAYFSPS  380 (498)
T ss_pred             ccceeecCCCCchheeecccCc---------------ceeeeehhhhcCCCC----cc--e--ecccccceeeeeEEcCC
Confidence            6788999999999998877422               333345432211110    00  0  01222235677899999


Q ss_pred             CCEEEEEeCCCCcEEEEEec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      |-.|.+++ .++.|.|||..
T Consensus       381 ~gtl~TT~-~D~~IRv~dss  399 (498)
T KOG4328|consen  381 GGTLLTTC-QDNEIRVFDSS  399 (498)
T ss_pred             CCceEeec-cCCceEEeecc
Confidence            88888888 78999999983

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.87  E-value=1.2  Score=42.51  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=20.7

Q ss_pred             eeEEEEccCCCEEEEE-eCCC--CcEEEEEecC
Q psy11412        182 VTDILISLDDRYLYTS-NWMH--GDIRQYDIRD  211 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs-~r~~--~~V~v~Dv~d  211 (290)
                      -.++..|+||++|++. +...  +.|.+.|+.+
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            4578999999999863 3332  4688888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.83  E-value=0.09  Score=49.34  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=12.9

Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      -..|+|.||| .||++-.
T Consensus       116 g~~l~fgpDG-~LYvs~G  132 (331)
T PF07995_consen  116 GGGLAFGPDG-KLYVSVG  132 (331)
T ss_dssp             EEEEEE-TTS-EEEEEEB
T ss_pred             CccccCCCCC-cEEEEeC
Confidence            4779999999 8888754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0264|consensus

Probab=95.82  E-value=0.091  Score=50.31  Aligned_cols=120  Identities=12%  Similarity=0.109  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+++.|-...||.+...++.+.+||++.. ..+....+...                               .+...
T Consensus       229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah-------------------------------~~~vn  276 (422)
T KOG0264|consen  229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAH-------------------------------SAEVN  276 (422)
T ss_pred             ceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCccccccc-------------------------------CCcee
Confidence            56789999999999999888999999999752 11111111110                               14567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|-+.++..+...               ++++..+|...+..  .+-     .+++    .......|.+||.-..
T Consensus       277 ~~~fnp~~~~ilAT~S~---------------D~tV~LwDlRnL~~--~lh-----~~e~----H~dev~~V~WSPh~et  330 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSA---------------DKTVALWDLRNLNK--PLH-----TFEG----HEDEVFQVEWSPHNET  330 (422)
T ss_pred             EEEeCCCCCceEEeccC---------------CCcEEEeechhccc--Cce-----eccC----CCcceEEEEeCCCCCc
Confidence            79999999888877652               23455566544211  111     1111    1246778999999888


Q ss_pred             EEEEeCCCCcEEEEEecC
Q psy11412        194 LYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +.+|.-.++.+.|||+..
T Consensus       331 vLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  331 VLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eeEecccCCcEEEEeccc
Confidence            777765889999999964

>KOG0277|consensus

Probab=95.79  E-value=0.3  Score=44.17  Aligned_cols=179  Identities=18%  Similarity=0.221  Sum_probs=100.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .......++.|+...-.+.++.++|++++||...+..|  +...+-      +                         ..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kE------H-------------------------~~  105 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKE------H-------------------------KR  105 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHh------h-------------------------hh
Confidence            34456788999886555555567999999997554332  111100      0                         02


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+..+-.++--+..++++.    ||          + ++..|+...   ++-+.+     +.+    ...-.+..++||-
T Consensus       106 EV~Svdwn~~~r~~~ltsS----WD----------~-TiKLW~~~r---~~Sv~T-----f~g----h~~~Iy~a~~sp~  158 (311)
T KOG0277|consen  106 EVYSVDWNTVRRRIFLTSS----WD----------G-TIKLWDPNR---PNSVQT-----FNG----HNSCIYQAAFSPH  158 (311)
T ss_pred             heEEeccccccceeEEeec----cC----------C-ceEeecCCC---CcceEe-----ecC----CccEEEEEecCCC
Confidence            3444556666666677665    33          2 233333211   122221     111    1246788999996


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeE----E-------------eeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ----I-------------FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~----i-------------~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                      ---|++|.-+++.+.+||+..++....|..    +             .+|   .-|+.|+.||...++ .|.-+ +.|.
T Consensus       159 ~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg---~vd~~vr~wDir~~r-~pl~e-L~gh  233 (311)
T KOG0277|consen  159 IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG---GVDNLVRGWDIRNLR-TPLFE-LNGH  233 (311)
T ss_pred             CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec---CCCceEEEEehhhcc-cccee-ecCC
Confidence            556666666899999999977655433211    1             122   357778888876543 33322 1222


Q ss_pred             cccCCcceEEEccCCCEEEEEcC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      .+  ..|.+.|||--.-|.++.+
T Consensus       234 ~~--AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  234 GL--AVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             ce--EEEEEecCcchhhHhhhcc
Confidence            22  3788899987766655543

>KOG0316|consensus

Probab=95.78  E-value=1.3  Score=39.89  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=94.5

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEE----------ee
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI----------FL   76 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i----------~~   76 (290)
                      |.=++-.+-|+++++|....++  -.+-++.+.|..+-..++.+. .+-++++||-... ..+.++.+          .+
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rg--H~aqVNtV~fNeesSVv~Sgs-fD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v  153 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRG--HLAQVNTVRFNEESSVVASGS-FDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDV  153 (307)
T ss_pred             CCCceEEEEEcccCeeeeeccc--ccceeeEEEecCcceEEEecc-ccceeEEEEcccC-CCCccchhhhhcCceeEEEe
Confidence            5556778899999998876511  245688899997777665544 5889999998752 23333211          11


Q ss_pred             c-ccc---cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecc
Q psy11412         77 G-GKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD  152 (290)
Q Consensus        77 g-~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~  152 (290)
                      . +.+   +-++++..++...-.       ......|.....+.||+||..+.+. .|.+++..               +
T Consensus       154 ~~heIvaGS~DGtvRtydiR~G~-------l~sDy~g~pit~vs~s~d~nc~La~-~l~stlrL---------------l  210 (307)
T KOG0316|consen  154 AEHEIVAGSVDGTVRTYDIRKGT-------LSSDYFGHPITSVSFSKDGNCSLAS-SLDSTLRL---------------L  210 (307)
T ss_pred             cccEEEeeccCCcEEEEEeecce-------eehhhcCCcceeEEecCCCCEEEEe-eccceeee---------------c
Confidence            0 000   012333222211000       0112234566789999999987754 33332221               1


Q ss_pred             eeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        153 EIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       153 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |-.+   .+.++.     ..|.  .....-.+..|+.-...++... .++.|.+||+-+   .+++...++.+
T Consensus       211 Dk~t---GklL~s-----YkGh--kn~eykldc~l~qsdthV~sgS-EDG~Vy~wdLvd---~~~~sk~~~~~  269 (307)
T KOG0316|consen  211 DKET---GKLLKS-----YKGH--KNMEYKLDCCLNQSDTHVFSGS-EDGKVYFWDLVD---ETQISKLSVVS  269 (307)
T ss_pred             ccch---hHHHHH-----hccc--ccceeeeeeeecccceeEEecc-CCceEEEEEecc---ceeeeeeccCC
Confidence            1111   111110     0010  0001233466777666665544 799999999976   34555555544

>KOG2139|consensus

Probab=95.77  E-value=0.029  Score=52.77  Aligned_cols=68  Identities=21%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ..+..+.-.+||..|..+..++.+|.+||++. +....+.  +-|.                               ++-
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~--~~gl-------------------------------gg~  241 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLI--PKGL-------------------------------GGF  241 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccc--ccCC-------------------------------Cce
Confidence            46778999999999999999999999999953 2222221  1111                               245


Q ss_pred             ceEEEccCCCEEEEEc--CCCCCC
Q psy11412        260 QMFQLSLDGKRIYVSS--SLFSPW  281 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van--~~~~~~  281 (290)
                      ..+-+||||.+||+|.  +.+..|
T Consensus       242 slLkwSPdgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  242 SLLKWSPDGDVLFAATCDAVFRLW  265 (445)
T ss_pred             eeEEEcCCCCEEEEecccceeeee
Confidence            6799999999999994  377777

>KOG0269|consensus

Probab=95.76  E-value=0.15  Score=52.06  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ..+.+.|++..-.+.+++..+|+|.+||+...... .+   .-+                              .-...|
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~-~t---~~~------------------------------nSESiR  180 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK-ST---FRS------------------------------NSESIR  180 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeeccccc-cc---ccc------------------------------cchhhh
Confidence            67789999999999999989999999999642211 00   001                              003578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|.-..-|++.-               +++.+..||+.-+  ++....     ..    ...+.+.-+-.+|++.+
T Consensus       181 DV~fsp~~~~~F~s~~---------------dsG~lqlWDlRqp--~r~~~k-----~~----AH~GpV~c~nwhPnr~~  234 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIH---------------DSGYLQLWDLRQP--DRCEKK-----LT----AHNGPVLCLNWHPNREW  234 (839)
T ss_pred             ceeeccCCCceEEEec---------------CCceEEEeeccCc--hhHHHH-----hh----cccCceEEEeecCCCce
Confidence            8999998655554432               3445544554221  001110     00    01134566889999999


Q ss_pred             EEEEeCCCCcEEEEEecCC
Q psy11412        194 LYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      |++.+ .+.+|.|||.++.
T Consensus       235 lATGG-RDK~vkiWd~t~~  252 (839)
T KOG0269|consen  235 LATGG-RDKMVKIWDMTDS  252 (839)
T ss_pred             eeecC-CCccEEEEeccCC
Confidence            99888 4889999999754

>KOG0322|consensus

Probab=95.68  E-value=0.044  Score=49.61  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ++..++.+-||+|.|+++.| ++.|+||.-........+..-+                                  ++.
T Consensus       252 pGv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVLkyHs----------------------------------agv  296 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVLKYHS----------------------------------AGV  296 (323)
T ss_pred             CCccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhhhhhh----------------------------------cce
Confidence            45678999999999999998 6789998764322222222111                                  257


Q ss_pred             ceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        260 QMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      +.++|+||-..+++|+.  .+|-|+
T Consensus       297 n~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  297 NAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             eEEEeCCCCchhhhccCCceEEeee
Confidence            89999999888888865  555554

>KOG0290|consensus

Probab=95.65  E-value=0.19  Score=46.24  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC
Q psy11412         29 DKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA   66 (290)
Q Consensus        29 ~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~   66 (290)
                      ++-+.-++.|+|+.+++.++++...+|+|++||+++..
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            34455788999999999999999999999999997643

>KOG4227|consensus

Probab=95.61  E-value=0.35  Score=46.10  Aligned_cols=120  Identities=14%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC---CCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT---AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~---~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      -+.++.||..|++|+. +..+-.+++|.++..   ..|+.++.                              ++.+-.+
T Consensus        58 CiNAlqFS~N~~~L~S-GGDD~~~~~W~~de~~~~k~~KPI~~------------------------------~~~~H~S  106 (609)
T KOG4227|consen   58 CINALQFSHNDRFLAS-GGDDMHGRVWNVDELMVRKTPKPIGV------------------------------MEHPHRS  106 (609)
T ss_pred             ccceeeeccCCeEEee-cCCcceeeeechHHHHhhcCCCCcee------------------------------ccCcccc
Confidence            4578999999999964 445778999998642   11222221                              1111124


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ....++|.-..+.||....                .+++..-++.+   .+.+-   ......    ..+.++++..||-
T Consensus       107 NIF~L~F~~~N~~~~SG~~----------------~~~VI~HDiEt---~qsi~---V~~~~~----~~~~VY~m~~~P~  160 (609)
T KOG4227|consen  107 NIFSLEFDLENRFLYSGER----------------WGTVIKHDIET---KQSIY---VANENN----NRGDVYHMDQHPT  160 (609)
T ss_pred             ceEEEEEccCCeeEecCCC----------------cceeEeeeccc---ceeee---eecccC----cccceeecccCCC
Confidence            5667999999999996432                12232223221   11111   000000    1136899999998


Q ss_pred             CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ...|.++. .++.|.+||+.+
T Consensus       161 DN~~~~~t-~~~~V~~~D~Rd  180 (609)
T KOG4227|consen  161 DNTLIVVT-RAKLVSFIDNRD  180 (609)
T ss_pred             CceEEEEe-cCceEEEEeccC
Confidence            77777777 478999999965

>KOG0307|consensus

Probab=95.60  E-value=0.12  Score=54.52  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=31.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP   68 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~   68 (290)
                      -.+.+.++.|++...-|.+++.++|.|.+||+.....+
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP  152 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP  152 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence            46688899999999966677778999999999875444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.57  E-value=0.042  Score=34.02  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=24.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      ..+..++++|++++|++++. +++|++||
T Consensus        12 ~~i~~i~~~~~~~~~~s~~~-D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGSS-DGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEET-TSEEEEEE
T ss_pred             CcEEEEEEecccccceeeCC-CCEEEEEC
Confidence            35789999999999998885 89999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.46  E-value=0.23  Score=48.73  Aligned_cols=18  Identities=11%  Similarity=0.259  Sum_probs=14.4

Q ss_pred             CCceEEEEccCCCEEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSS  128 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~n  128 (290)
                      ..|++|+|.|||+ ++|+.
T Consensus        30 ~~Pw~maflPDG~-llVtE   47 (454)
T TIGR03606        30 NKPWALLWGPDNQ-LWVTE   47 (454)
T ss_pred             CCceEEEEcCCCe-EEEEE
Confidence            5899999999996 55554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0292|consensus

Probab=95.40  E-value=0.43  Score=49.76  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      .+-+++|.|..-++.++- .+|.|.+||..
T Consensus        11 RvKglsFHP~rPwILtsl-HsG~IQlWDYR   39 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSL-HSGVIQLWDYR   39 (1202)
T ss_pred             cccceecCCCCCEEEEee-cCceeeeehhh
Confidence            355789999999998774 68999999975

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.32  E-value=0.031  Score=42.22  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=28.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .|.+|++|||+++|||++...+.|++|...+
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            7899999999999999999999999998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.25  E-value=0.36  Score=44.81  Aligned_cols=29  Identities=10%  Similarity=-0.026  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      .+++|+++|.| .++|++-+.+...+||..
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGN   52 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCC
Confidence            78999999977 678898899999999986

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1963|consensus

Probab=95.22  E-value=0.54  Score=48.54  Aligned_cols=59  Identities=14%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      +..++||+||.+||+++. .+.+.+|.+..+. .+.+..                                  -|+-..|
T Consensus       254 V~~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~-kqfLPR----------------------------------Lgs~I~~  297 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGR-EGVLVLWQLETGK-KQFLPR----------------------------------LGSPILH  297 (792)
T ss_pred             cceeEEecCCceEeeccc-ceEEEEEeecCCC-cccccc----------------------------------cCCeeEE
Confidence            336999999999998876 7899999987643 444432                                  1356799


Q ss_pred             EEEccCCCEEEEEcC
Q psy11412        115 FQLSLDGKRIYVSSS  129 (290)
Q Consensus       115 vafsPdG~~lYv~ne  129 (290)
                      +++|||+....+..+
T Consensus       298 i~vS~ds~~~sl~~~  312 (792)
T KOG1963|consen  298 IVVSPDSDLYSLVLE  312 (792)
T ss_pred             EEEcCCCCeEEEEec
Confidence            999999998777766

>KOG0649|consensus

Probab=95.22  E-value=1.2  Score=40.16  Aligned_cols=97  Identities=18%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCce------------E-----eeEEeeCceecCCCceEEecCCCCCC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV------------L-----VGQIFLGGKIQSDSGVTVIDDPELDK  243 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~------------~-----v~~i~~Gg~~~~~~~v~~~~~~~~~~  243 (290)
                      ...++-+.|...-++.+. +++.++.||+.+. +.+            +     -++|.+|   ..||+|++||.++...
T Consensus       116 eINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG---~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSG---AEDGTVRVWDTKTQKH  190 (325)
T ss_pred             ccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeec---CCCccEEEEeccccce
Confidence            456788998887777777 8999999999652 111            0     1123333   4799999999877431


Q ss_pred             CCCcceeecccc-c--CCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412        244 QPDPVIIKGRRF-T--GSSQMFQLSLDGKRIYVSSS-LFSPWD  282 (290)
Q Consensus       244 ~~~~~~~~~~~~-~--~~P~~~a~sPDG~~L~Van~-~~~~~~  282 (290)
                      -...+.++-... .  -+-+-+++.-+-.||..... ..+-||
T Consensus       191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh  233 (325)
T KOG0649|consen  191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH  233 (325)
T ss_pred             eEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence            000001110000 0  02344777778888877654 444454

>KOG1036|consensus

Probab=95.15  E-value=0.82  Score=42.21  Aligned_cols=30  Identities=27%  Similarity=0.563  Sum_probs=26.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ....+-|+|.+..|+++.| +|++++|++..
T Consensus        15 ~IS~v~f~~~~~~LLvssW-DgslrlYdv~~   44 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSW-DGSLRLYDVPA   44 (323)
T ss_pred             ceeeEEEcCcCCcEEEEec-cCcEEEEeccc
Confidence            5678999999999999999 79999999964

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.14  E-value=0.13  Score=48.46  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=42.1

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEecC---CC--CceEe-eEEeeCceecCCCceEEecCCCCCCC--CCcceeecc
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDIRD---TA--HPVLV-GQIFLGGKIQSDSGVTVIDDPELDKQ--PDPVIIKGR  253 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d---~~--~~~~v-~~i~~Gg~~~~~~~v~~~~~~~~~~~--~~~~~~~~~  253 (290)
                      ..++-+||||++|+..-..+..|..+.+.+   +.  .++.. -..|.-|.-.+.-.|.|++.......  +.+..+.  
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~--  180 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN--  180 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH--
T ss_pred             ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC--
Confidence            356899999999887655566666666632   21  12221 12232222112223555666543211  0000000  


Q ss_pred             cccCCcceEEEccCCCEEEEE
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Va  274 (290)
                      .....-..+.+++|+++|++.
T Consensus       181 ~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             TSSEEEEEEEEEETTEEEEEE
T ss_pred             CCccCcccceecCCCcEEEEE
Confidence            001135789999999966664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4328|consensus

Probab=95.12  E-value=0.7  Score=44.77  Aligned_cols=66  Identities=11%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      ...+|++.|--.++.++.-.++++.+||+......+. -.            |+.+        +|+         ....
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-p~------------lst~--------~Hr---------rsV~  373 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-PF------------LSTL--------PHR---------RSVN  373 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCC-cc------------eecc--------ccc---------ceee
Confidence            4677999999888887776789999999853211110 00            1111        121         1468


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      ++-|||+|.+|+.+++
T Consensus       374 sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  374 SAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             eeEEcCCCCceEeecc
Confidence            8999999999888776

>KOG3914|consensus

Probab=95.10  E-value=0.39  Score=45.60  Aligned_cols=145  Identities=18%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC-ceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~-~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..+..+++|+.||+++. +....++++...-. .+.+....+                                ...|
T Consensus        64 a~~~~~~s~~~~llAv~~~-~K~~~~f~~~~~~~~~kl~~~~~v--------------------------------~~~~  110 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATS-SKQRAVFDYRENPKGAKLLDVSCV--------------------------------PKRP  110 (390)
T ss_pred             cccccccCCCceEEEEEeC-CCceEEEEEecCCCcceeeeEeec--------------------------------ccCc
Confidence            5667889999999999986 44656666643211 122211111                                1356


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.+.|-.+-...-|+...               | -...+++..... +...  +   ..|    .-....+|++|||++
T Consensus       111 ~ai~~~~~~~sv~v~dka---------------g-D~~~~di~s~~~-~~~~--~---~lG----hvSml~dVavS~D~~  164 (390)
T KOG3914|consen  111 TAISFIREDTSVLVADKA---------------G-DVYSFDILSADS-GRCE--P---ILG----HVSMLLDVAVSPDDQ  164 (390)
T ss_pred             ceeeeeeccceEEEEeec---------------C-Cceeeeeecccc-cCcc--h---hhh----hhhhhheeeecCCCC
Confidence            667777777766665431               1 111123322100 0000  0   000    114678899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCC--------CCceEeeEEeeCce-----ecCCCceEEecC
Q psy11412        193 YLYTSNWMHGDIRQYDIRDT--------AHPVLVGQIFLGGK-----IQSDSGVTVIDD  238 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~--------~~~~~v~~i~~Gg~-----~~~~~~v~~~~~  238 (290)
                      ++..++| ++.|+|-....+        ++...+-++.++..     -+-|++|++||-
T Consensus       165 ~IitaDR-DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  165 FIITADR-DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             EEEEecC-CceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence            9999996 667776554321        12223333333211     045788999983

>KOG0313|consensus

Probab=95.06  E-value=0.24  Score=46.92  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+|.+++ -..+|.+.+ +.+|++||+..++   .+..+..+                                ..-.
T Consensus       262 ~Vs~V~w~d-~~v~yS~Sw-DHTIk~WDletg~---~~~~~~~~--------------------------------ksl~  304 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSW-DHTIKVWDLETGG---LKSTLTTN--------------------------------KSLN  304 (423)
T ss_pred             ceeeEEEcC-CCceEeecc-cceEEEEEeeccc---ceeeeecC--------------------------------ccee
Confidence            355677775 888998887 7899999997633   22222111                                2345


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+..+|.-+.|.+.+.. ..+.  .++....++ .+...+                 +.+    ..+++.++.-||-..|
T Consensus       305 ~i~~~~~~~Ll~~gssd-r~ir--l~DPR~~~g-s~v~~s-----------------~~g----H~nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  305 CISYSPLSKLLASGSSD-RHIR--LWDPRTGDG-SVVSQS-----------------LIG----HKNWVSSVKWSPTNEF  359 (423)
T ss_pred             EeecccccceeeecCCC-Ccee--ecCCCCCCC-ceeEEe-----------------eec----chhhhhheecCCCCce
Confidence            68889988887765441 1110  011100111 111010                 001    2256778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCC
Q psy11412        194 LYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      .++|.-.+|++.+||+..+
T Consensus       360 ~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  360 QLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             EEEEEecCCeEEEEEeccC
Confidence            9999989999999999654

>KOG0641|consensus

Probab=95.03  E-value=1.1  Score=40.07  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .....+.|||-..+|.+.. .++.|.+-|+.
T Consensus       274 adir~vrfsp~a~yllt~s-yd~~ikltdlq  303 (350)
T KOG0641|consen  274 ADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQ  303 (350)
T ss_pred             cceeEEEeCCCceEEEEec-ccceEEEeecc
Confidence            4567799999999987766 78999998884

>KOG0313|consensus

Probab=94.99  E-value=0.89  Score=43.15  Aligned_cols=99  Identities=18%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCC------ceEeeEEeeCce---e---cCCCceEEecCCCCCCCCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH------PVLVGQIFLGGK---I---QSDSGVTVIDDPELDKQPDP  247 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~------~~~v~~i~~Gg~---~---~~~~~v~~~~~~~~~~~~~~  247 (290)
                      ..+.+|.+++ -..+|...| +.+|.+||+...+.      ++.+-.+..+..   +   +.|.-++|+|++.....-..
T Consensus       261 ~~Vs~V~w~d-~~v~yS~Sw-DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSW-DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             cceeeEEEcC-CCceEeecc-cceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence            3577888888 678898886 66999999953211      111222222211   1   45566889987764322222


Q ss_pred             ceeecccccCCcceEEEccCCCEEEEEcC---CCCCCC
Q psy11412        248 VIIKGRRFTGSSQMFQLSLDGKRIYVSSS---LFSPWD  282 (290)
Q Consensus       248 ~~~~~~~~~~~P~~~a~sPDG~~L~Van~---~~~~~~  282 (290)
                      ..+.|..  ++...+..+|.-.+++++.+   +.+-||
T Consensus       339 ~s~~gH~--nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  339 QSLIGHK--NWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             Eeeecch--hhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            2444443  36889999999999999865   444454

>KOG0268|consensus

Probab=94.87  E-value=0.21  Score=47.09  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ....+.|+|-...+.+++..+++|.+||..
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R  218 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLR  218 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecc
Confidence            346689999999999999889999999984

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.78  E-value=0.078  Score=32.74  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=25.0

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEE
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYD  208 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~D  208 (290)
                      .....|+++|++++|+++. .++.|.+||
T Consensus        12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            4577899999999999998 789999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1063|consensus

Probab=94.68  E-value=0.05  Score=54.79  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             ceeEEEEccCCCEEEEEeCCC----CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        181 MVTDILISLDDRYLYTSNWMH----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~----~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                      ..+.+++||+|.+++.+++.+    ..|.+|....   ...++.+ .+.+      +                       
T Consensus       527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L-~~Hs------L-----------------------  573 (764)
T KOG1063|consen  527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---WLQVQEL-EGHS------L-----------------------  573 (764)
T ss_pred             eEEEEEecCCCCEEeehhhhCCccceEEEEEeccc---hhhhhee-cccc------e-----------------------
Confidence            488899999999999998754    5688887643   3333322 1221      0                       


Q ss_pred             CCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                       ....++|||||++|+.+++  +.+-|.
T Consensus       574 -TVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  574 -TVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             -EEEEEEECCCCcEEEEeecCceEEeee
Confidence             3667999999999999977  555544

>KOG3881|consensus

Probab=94.66  E-value=0.95  Score=43.05  Aligned_cols=61  Identities=20%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      ....+.+.|+|.++|++| ..+.+..||+..   .++++.-. +|                           .  .|.++
T Consensus       249 ~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~---~kl~g~~~-kg---------------------------~--tGsir  294 (412)
T KOG3881|consen  249 PISSTGLTPSGNFIYTGN-TKGQLAKFDLRG---GKLLGCGL-KG---------------------------I--TGSIR  294 (412)
T ss_pred             cceeeeecCCCcEEEEec-ccchhheecccC---ceeecccc-CC---------------------------c--cCCcc
Confidence            456799999999999999 789999999853   34433211 11                           1  24689


Q ss_pred             eEEEccCCCEEEEEc
Q psy11412        261 MFQLSLDGKRIYVSS  275 (290)
Q Consensus       261 ~~a~sPDG~~L~Van  275 (290)
                      .+...|.+++|+.+.
T Consensus       295 sih~hp~~~~las~G  309 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCG  309 (412)
T ss_pred             eEEEcCCCceEEeec
Confidence            999999999888764

>KOG0650|consensus

Probab=94.65  E-value=0.79  Score=45.90  Aligned_cols=181  Identities=12%  Similarity=0.135  Sum_probs=105.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~--~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      +..+..+....+|.||++....  .-.|.|++++.....  ..   .                          .   ...
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~P---F--------------------------~---ksk  566 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SP---F--------------------------R---KSK  566 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--Cc---h--------------------------h---hcC
Confidence            4456678888999999988653  345777776542111  00   0                          0   012


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      +.|..+.|||.-.+|+|+..    .+             +   .+-++.....+..         .++...+...++++|
T Consensus       567 G~vq~v~FHPs~p~lfVaTq----~~-------------v---RiYdL~kqelvKk---------L~tg~kwiS~msihp  617 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQ----RS-------------V---RIYDLSKQELVKK---------LLTGSKWISSMSIHP  617 (733)
T ss_pred             CceeEEEecCCCceEEEEec----cc-------------e---EEEehhHHHHHHH---------HhcCCeeeeeeeecC
Confidence            56888999999999999865    11             1   1122211111221         112234678899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCc--------eEeeEE------eeCceecCCCceEEecC---CCCCCCCCcc---e
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHP--------VLVGQI------FLGGKIQSDSGVTVIDD---PELDKQPDPV---I  249 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~--------~~v~~i------~~Gg~~~~~~~v~~~~~---~~~~~~~~~~---~  249 (290)
                      .|--|.+++ .++.+-+||++-...+        +.+..+      +.=-..++|+++.|.-.   .++-..|...   .
T Consensus       618 ~GDnli~gs-~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  618 NGDNLILGS-YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             CCCeEEEec-CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            999999999 7889999999522111        111111      11111267888887431   1222444443   2


Q ss_pred             eeccccc--CCcceEEEccCCCEEEEEcC
Q psy11412        250 IKGRRFT--GSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       250 ~~~~~~~--~~P~~~a~sPDG~~L~Van~  276 (290)
                      ++|....  .+.=+..|.|..-|||.|++
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGA  725 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGA  725 (733)
T ss_pred             ccCceeecccceEeecccCCCceEEecCC
Confidence            3333221  13445669999999999987

>KOG0269|consensus

Probab=94.65  E-value=0.11  Score=53.03  Aligned_cols=119  Identities=10%  Similarity=0.091  Sum_probs=71.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....|.|+|--..-+++.+.+|.|.+||++.+.+...--   +.+                              .+-+-
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~---~AH------------------------------~GpV~  224 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL---TAH------------------------------NGPVL  224 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh---hcc------------------------------cCceE
Confidence            677899999988888898899999999997654433211   111                              02345


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+-+||++.+|+..+.                ++.+.+|+..+.. ...+.++..          .....-+.+-|+-++
T Consensus       225 c~nwhPnr~~lATGGR----------------DK~vkiWd~t~~~-~~~~~tInT----------iapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGR----------------DKMVKIWDMTDSR-AKPKHTINT----------IAPVGRVKWRPARSY  277 (839)
T ss_pred             EEeecCCCceeeecCC----------------CccEEEEeccCCC-ccceeEEee----------cceeeeeeeccCccc
Confidence            5889999988886543                2234445544311 111111110          012334667777666


Q ss_pred             EEEEeC--CCCcEEEEEecCC
Q psy11412        194 LYTSNW--MHGDIRQYDIRDT  212 (290)
Q Consensus       194 Lyvs~r--~~~~V~v~Dv~d~  212 (290)
                      ..+++-  .+-+|.||||..|
T Consensus       278 hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             hhhhhhccccceEEEEeeccc
Confidence            554432  4668999999754

>KOG0322|consensus

Probab=94.58  E-value=0.051  Score=49.22  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...++.+-||+|.|++|+| ++.|+||......-+.++   +-+                               -++..
T Consensus       253 Gv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVL---kyH-------------------------------sagvn  297 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVL---KYH-------------------------------SAGVN  297 (323)
T ss_pred             CccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhh---hhh-------------------------------hccee
Confidence            4668899999999999999 789999998763322222   121                               05788


Q ss_pred             EEEEccCCCEEEEEcC
Q psy11412        114 MFQLSLDGKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPdG~~lYv~ne  129 (290)
                      .++||||-..++.+++
T Consensus       298 ~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASK  313 (323)
T ss_pred             EEEeCCCCchhhhccC
Confidence            8999999776666554

>KOG0303|consensus

Probab=94.55  E-value=1.5  Score=41.92  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             ecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCc
Q psy11412         16 DIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD   95 (290)
Q Consensus        16 ~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~   95 (290)
                      ++.+++....+   .-+....++.|+-||.+|.+++- +-+|+|||-..   .+++.+- .+                  
T Consensus       160 nv~tgeali~l---~hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~---~~~v~e~-~~------------------  213 (472)
T KOG0303|consen  160 NVGTGEALITL---DHPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR---GTVVSEG-VA------------------  213 (472)
T ss_pred             eccCCceeeec---CCCCeEEEEEeccCCceeeeecc-cceeEEEcCCC---CcEeeec-cc------------------
Confidence            44444443333   34667889999999999998886 78999998643   4444321 11                  


Q ss_pred             CCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccc
Q psy11412         96 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWK  175 (290)
Q Consensus        96 ~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~  175 (290)
                                 ..|..|.-..|--+|+ ++.+.-  +.+          ....+..|+...+..+-.+.          .
T Consensus       214 -----------heG~k~~Raifl~~g~-i~tTGf--sr~----------seRq~aLwdp~nl~eP~~~~----------e  259 (472)
T KOG0303|consen  214 -----------HEGAKPARAIFLASGK-IFTTGF--SRM----------SERQIALWDPNNLEEPIALQ----------E  259 (472)
T ss_pred             -----------ccCCCcceeEEeccCc-eeeecc--ccc----------cccceeccCcccccCcceeE----------E
Confidence                       1245677788888998 555432  111          11123334433321110000          0


Q ss_pred             cCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        176 YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       176 ~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +-..+++-=--+.||-+.+|...-|+++|+-|.+.+
T Consensus       260 lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  260 LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            111111111246899999999999999999999965

>KOG0292|consensus

Probab=94.43  E-value=0.36  Score=50.34  Aligned_cols=114  Identities=13%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+.+.+|.|.|++- |+|++.++=.|.||+...   .+++-++ .|+.                              .-
T Consensus        51 dGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~---rrclftL-~GHl------------------------------DY   95 (1202)
T KOG0292|consen   51 DGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT---RRCLFTL-LGHL------------------------------DY   95 (1202)
T ss_pred             CCccceeeecCCCC-eEEecCCccEEEEEeccc---ceehhhh-cccc------------------------------ce
Confidence            45678999999877 567877788999999864   3444322 2210                              46


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCC-ceeEEEEccC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARS-MVTDILISLD  190 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-~~~~i~~SpD  190 (290)
                      .|.+.||+.-.|+..++.                +.++-+|+..+   ++-+..          +.+.+ .+--..|+|-
T Consensus        96 VRt~~FHheyPWIlSASD----------------DQTIrIWNwqs---r~~iav----------ltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   96 VRTVFFHHEYPWILSASD----------------DQTIRIWNWQS---RKCIAV----------LTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             eEEeeccCCCceEEEccC----------------CCeEEEEeccC---CceEEE----------EecCceEEEeeccCCc
Confidence            888999999998886543                32333343322   222221          12233 4455679997


Q ss_pred             CCEEEEEeCCCCcEEEEEec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ...+. |.-.+.+|+||||+
T Consensus       147 EDlIV-SaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  147 EDLIV-SASLDQTVRVWDIS  165 (1202)
T ss_pred             cceEE-EecccceEEEEeec
Confidence            76554 44489999999996

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.40  E-value=0.44  Score=45.24  Aligned_cols=18  Identities=11%  Similarity=0.292  Sum_probs=15.0

Q ss_pred             CCceEEEEccCCCEEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSS  128 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~n  128 (290)
                      ..|++|+|+++|+ |||+.
T Consensus        14 ~~P~~ia~d~~G~-l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAE   31 (367)
T ss_pred             CCCceeeECCCCC-EEEEe
Confidence            5799999999998 66654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.38  E-value=2.1  Score=41.10  Aligned_cols=135  Identities=16%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             ceEEEEE--cC-CCCEEEEEeCCCCeEEEEEcCCCCCcee----eeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         34 MVTDILI--SL-DDRYLYTSNWMHGDIRQYDIRDTAHPVL----VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        34 ~p~~va~--Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~----~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      -|+++++  +| +|++-+..+..+|.+..|.+.+.+...+    +.++.+                              
T Consensus       157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~------------------------------  206 (381)
T PF02333_consen  157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV------------------------------  206 (381)
T ss_dssp             SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-------------------------------
T ss_pred             cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC------------------------------
Confidence            3778886  43 4664333344578999999975444332    332222                              


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                        ++.+.+++.+....+||++.|-.+.|-...-++   .+..-..++...            +   . .+  .....+|+
T Consensus       207 --~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~---~~~~~~~v~~~~------------g---~-~l--~aDvEGla  263 (381)
T PF02333_consen  207 --GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPE---GGNDRTLVASAD------------G---D-GL--VADVEGLA  263 (381)
T ss_dssp             --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCC---C-S--EEEEEBS------------S---S-SB---S-EEEEE
T ss_pred             --CCcceEEEEecccCCEEEecCccEEEEEecCCC---CCCcceeeeccc------------c---c-cc--ccCccceE
Confidence              367899999999999999988555553211111   111000011100            0   0 01  12345566


Q ss_pred             E--ccCC-CEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        187 I--SLDD-RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       187 ~--SpDG-r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      |  ..+| .+|.+|+.++++..|||...+  ...++.+.+
T Consensus       264 ly~~~~g~gYLivSsQG~~sf~Vy~r~~~--~~~~g~f~i  301 (381)
T PF02333_consen  264 LYYGSDGKGYLIVSSQGDNSFAVYDREGP--NAYVGSFRI  301 (381)
T ss_dssp             EEE-CCC-EEEEEEEGGGTEEEEEESSTT----EEEEEEE
T ss_pred             EEecCCCCeEEEEEcCCCCeEEEEecCCC--CcccceEEe
Confidence            6  4566 489999999999999998543  244555544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1188|consensus

Probab=94.31  E-value=0.92  Score=42.53  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ..+..+.|+|.---|.+|.--+|-|-+||+..
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            46788999998777777776899999999953

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=94.27  E-value=3.7  Score=36.50  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .....++++|+|+.+.++.-.++.|.+||..
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            3567789999999656664468899999764

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.21  E-value=0.16  Score=47.61  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             ceeEEEEccCCCEEEEEeCCC------CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412        181 MVTDILISLDDRYLYTSNWMH------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                      .+.+|++.+||.+ |+|.++.      ..|..++..    .+.+..+++...+.                |......+++
T Consensus        86 D~Egi~~~~~g~~-~is~E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~~~~----------------~~~~~~~~~~  144 (326)
T PF13449_consen   86 DPEGIAVPPDGSF-WISSEGGRTGGIPPRIRRFDLD----GRVIRRFPVPAAFL----------------PDANGTSGRR  144 (326)
T ss_pred             ChhHeEEecCCCE-EEEeCCccCCCCCCEEEEECCC----CcccceEccccccc----------------cccCcccccc
Confidence            4557999888876 5666677      788777653    23334333322110                0000013344


Q ss_pred             ccCCcceEEEccCCCEEEEEcC
Q psy11412        255 FTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       255 ~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ...+..+|+++|||++||++.+
T Consensus       145 ~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  145 NNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             CCCCeEEEEECCCCCEEEEEEC
Confidence            4457999999999999999988

>KOG1272|consensus

Probab=94.13  E-value=0.18  Score=48.87  Aligned_cols=32  Identities=22%  Similarity=0.503  Sum_probs=27.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      +.+.+|++.++|+++.++. .+..|.|||+...
T Consensus       294 g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNF  325 (545)
T ss_pred             CCcceEEECCCCcEEeecc-cccceeEeeeccc
Confidence            4577899999999999998 7999999999653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.03  E-value=2.5  Score=42.18  Aligned_cols=61  Identities=20%  Similarity=0.057  Sum_probs=46.1

Q ss_pred             CCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        179 RSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       179 ~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      +..+.-.++||+...|..++ .|++|.+||....    ....+...-                                -
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~----~t~~~ka~~--------------------------------~  301 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGC-EDGSIILYDTTRG----VTLLAKAEF--------------------------------I  301 (545)
T ss_pred             CCcceEEecCcccceEEEEe-cCCeEEEEEcCCC----eeeeeeecc--------------------------------c
Confidence            34566789999999999999 7999999998421    111111111                                5


Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      |..+++.|||..+.|+|+
T Consensus       302 P~~iaWHp~gai~~V~s~  319 (545)
T PF11768_consen  302 PTLIAWHPDGAIFVVGSE  319 (545)
T ss_pred             ceEEEEcCCCcEEEEEcC
Confidence            889999999999999987

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.92  E-value=0.1  Score=39.38  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=27.1

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..|.+|.+|||+++|||+.-..++|.+|.+.
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3567899999999999999888999999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1538|consensus

Probab=93.87  E-value=1.2  Score=45.26  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ..+.++|-|||..|.++.  ++.+.+||..+++....+.   .+                               -..+.
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLK---gH-------------------------------KDtVy   57 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLK---GH-------------------------------KDTVY   57 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCcccccccc---cc-------------------------------cceEE
Confidence            567899999999999986  4799999998854333221   11                               04567


Q ss_pred             EEEEccCCCEEEEEcCCCC--Ccceee--cccccCCCceeecceeeeeeec-ccccccCccccCccccCC--------CC
Q psy11412        114 MFQLSLDGKRIYVSSSLFS--PWDKEI--YPDLVKTDAAFGSDEIMEFIQR-NEMRSMPLSSLGSWKYPA--------RS  180 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~--~~d~~~--~~~~~~~g~~~~~~~~~~~~~~-~~i~~~p~~~~~~~~~~~--------~~  180 (290)
                      .+++|.||++++..+....  .|....  ...++ .+.   .++-..|.+- +.+++.....+.-|.-..        ..
T Consensus        58 cVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS-H~D---~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~  133 (1081)
T KOG1538|consen   58 CVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS-HND---AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS  133 (1081)
T ss_pred             EEEEccCCceeccCCCceeEEEecccccceeeec-cCC---eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe
Confidence            7999999998775433111  111100  00000 011   1222222111 122222222233442111        02


Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEE
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQY  207 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~  207 (290)
                      ..-..+...||.+|...- ++++|++=
T Consensus       134 R~~~CsWtnDGqylalG~-~nGTIsiR  159 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGM-FNGTISIR  159 (1081)
T ss_pred             eEEEeeecCCCcEEEEec-cCceEEee
Confidence            355678899999998877 78999865

>KOG1523|consensus

Probab=93.82  E-value=1.4  Score=40.99  Aligned_cols=178  Identities=13%  Similarity=0.102  Sum_probs=97.2

Q ss_pred             eecCCCc-eeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412          2 YRQSDGT-YKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      |+.++.+ |+...++.--++             .+.+|..+|-..+|. ++..+..-.||...+.+.=+..-.+      
T Consensus        37 y~~~~~~~w~~~htls~Hd~-------------~vtgvdWap~snrIv-tcs~drnayVw~~~~~~~WkptlvL------   96 (361)
T KOG1523|consen   37 YSMLGADLWEPAHTLSEHDK-------------IVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSGGTWKPTLVL------   96 (361)
T ss_pred             EEecCCCCceeceehhhhCc-------------ceeEEeecCCCCcee-EccCCCCccccccCCCCeeccceeE------
Confidence            5666666 777665544443             356678888887875 4445677788887432221111000      


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR  160 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~  160 (290)
                                               .+.......+..+|.+..++|.+ ....+++++|..   ..++    -+.     
T Consensus        97 -------------------------lRiNrAAt~V~WsP~enkFAVgS-gar~isVcy~E~---ENdW----WVs-----  138 (361)
T KOG1523|consen   97 -------------------------LRINRAATCVKWSPKENKFAVGS-GARLISVCYYEQ---ENDW----WVS-----  138 (361)
T ss_pred             -------------------------EEeccceeeEeecCcCceEEecc-CccEEEEEEEec---ccce----ehh-----
Confidence                                     01123456789999998877644 345667766643   1112    110     


Q ss_pred             ccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec-----C-CCCceEeeEEeeCceecCCCceE
Q psy11412        161 NEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR-----D-TAHPVLVGQIFLGGKIQSDSGVT  234 (290)
Q Consensus       161 ~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~-----d-~~~~~~v~~i~~Gg~~~~~~~v~  234 (290)
                      +.++           .|-......+..+|++=.|.+.. .|...+||..-     . |+..-.-..+|-|..        
T Consensus       139 Khik-----------kPirStv~sldWhpnnVLlaaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l--------  198 (361)
T KOG1523|consen  139 KHIK-----------KPIRSTVTSLDWHPNNVLLAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL--------  198 (361)
T ss_pred             hhhC-----------CccccceeeeeccCCcceecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHH--------
Confidence            1111           01113345677888887777666 67777777641     1 111111112222211        


Q ss_pred             EecCCCCCCCCCcceeecc-cccCCcceEEEccCCCEEE
Q psy11412        235 VIDDPELDKQPDPVIIKGR-RFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~-~~~~~P~~~a~sPDG~~L~  272 (290)
                                     .... +.+|+.+.+.|+|+|.+|+
T Consensus       199 ---------------m~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  199 ---------------MSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             ---------------HHhhccCCCceeeeEeCCCCCEee
Confidence                           1111 3467899999999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=93.72  E-value=4.7  Score=35.80  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ....++++|++++++++...++.+.+|++..
T Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             cEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            4558999999997766632389999999865

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=93.68  E-value=0.15  Score=29.92  Aligned_cols=26  Identities=8%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEE
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQY  207 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~  207 (290)
                      .|.+|+++++| .+|+++++++.|.+|
T Consensus         3 ~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            46789999777 569999999988875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=93.63  E-value=0.27  Score=44.86  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             eEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        183 TDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +-+++|||+..|+.+. ..++|.+||+.
T Consensus        47 Rkl~WSpD~tlLa~a~-S~G~i~vfdl~   73 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAE-STGTIRVFDLM   73 (282)
T ss_pred             eEEEECCCCcEEEEEc-CCCeEEEEecc
Confidence            5599999999999887 78999999985

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.59  E-value=4.6  Score=37.97  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=32.6

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      -.+.|++.+++....   .-........+||||++++-..  ++.|.+++..+
T Consensus        25 y~i~d~~~~~~~~l~---~~~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~   72 (353)
T PF00930_consen   25 YYIYDIETGEITPLT---PPPPKLQDAKWSPDGKYIAFVR--DNNLYLRDLAT   72 (353)
T ss_dssp             EEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE--TTEEEEESSTT
T ss_pred             EEEEecCCCceEECc---CCccccccceeecCCCeeEEEe--cCceEEEECCC
Confidence            356788877655543   1134566789999999998775  46899998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.57  E-value=0.48  Score=48.14  Aligned_cols=19  Identities=37%  Similarity=0.377  Sum_probs=16.1

Q ss_pred             CCcceEEEccCCCEEEEEc
Q psy11412        257 GSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van  275 (290)
                      +.+..+.+||||++|++..
T Consensus       448 g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        448 GPISELQLSRDGVRAAMII  466 (591)
T ss_pred             CCcCeEEECCCCCEEEEEE
Confidence            3688999999999998754

>KOG0647|consensus

Probab=93.41  E-value=0.16  Score=46.73  Aligned_cols=31  Identities=16%  Similarity=0.564  Sum_probs=23.6

Q ss_pred             ceeEEEEccCCCEEE-EEeCCCCcEEEEEecCC
Q psy11412        181 MVTDILISLDDRYLY-TSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       181 ~~~~i~~SpDGr~Ly-vs~r~~~~V~v~Dv~d~  212 (290)
                      ...+|+|||.-..|. ++.| +++|++|+|.+.
T Consensus        29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~   60 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNS   60 (347)
T ss_pred             chheeEeccccCceEEeccc-CCceEEEEEecC
Confidence            567899999544444 6665 889999999763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=93.33  E-value=1.9  Score=42.50  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEe-CCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         31 VPAMVTDILISLDDRYLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~-~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      +.+-++..+++|+++...+.. +..-++.++|+..  +.+..     .                    |          .
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~-----~--------------------P----------e  315 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFY-----F--------------------P----------E  315 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeeccccc--ceEEe-----c--------------------C----------C
Confidence            345788999999988777665 7778899998842  22211     0                    0          0


Q ss_pred             CCceEEEEccCCCEEEEEcC--CCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS--LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne--l~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      ..-..+.|||.++++.++.-  +.+.+                  .+.+...+-.+.    +.+      .+....-+.+
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni------------------~i~~~~~rf~~~----~~~------~~~n~s~~~w  367 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNI------------------EIFDPAGRFKVA----GAF------NGLNTSYCDW  367 (561)
T ss_pred             cccccccccCcccEEEEecCCccccce------------------EEeccCCceEEE----EEe------ecCCceEeec
Confidence            12234889999999888542  21211                  111110011111    001      1112334679


Q ss_pred             ccCCCEEEEEe-----CCCCcEEEEEecC
Q psy11412        188 SLDDRYLYTSN-----WMHGDIRQYDIRD  211 (290)
Q Consensus       188 SpDGr~Lyvs~-----r~~~~V~v~Dv~d  211 (290)
                      ||||.|++++.     |-|+.|.+|||.-
T Consensus       368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cCCceEEEecCCCcccccCcceEEEEecC
Confidence            99999999754     3478999999963

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.30  E-value=0.98  Score=41.51  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=73.3

Q ss_pred             EEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC
Q psy11412         14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE   93 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~   93 (290)
                      -+|-.+++|..+.  ..-+++|++|.+.|||..- +++.+. .|.  +++ +.+.+... ..+..               
T Consensus        87 hLdP~tGev~~yp--Lg~Ga~Phgiv~gpdg~~W-itd~~~-aI~--R~d-pkt~evt~-f~lp~---------------  143 (353)
T COG4257          87 HLDPATGEVETYP--LGSGASPHGIVVGPDGSAW-ITDTGL-AIG--RLD-PKTLEVTR-FPLPL---------------  143 (353)
T ss_pred             ecCCCCCceEEEe--cCCCCCCceEEECCCCCee-EecCcc-eeE--Eec-CcccceEE-eeccc---------------
Confidence            4566677777774  2246699999999999754 455422 343  442 22233321 11110               


Q ss_pred             CcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCc
Q psy11412         94 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGS  173 (290)
Q Consensus        94 ~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~  173 (290)
                                  ...-.+-+..+|+++|+.-|+....       +|      | .   +|..    +..+.        .
T Consensus       144 ------------~~a~~nlet~vfD~~G~lWFt~q~G-------~y------G-r---LdPa----~~~i~--------v  182 (353)
T COG4257         144 ------------EHADANLETAVFDPWGNLWFTGQIG-------AY------G-R---LDPA----RNVIS--------V  182 (353)
T ss_pred             ------------ccCCCcccceeeCCCccEEEeeccc-------cc------e-e---cCcc----cCcee--------e
Confidence                        0011456678999999977764321       00      1 1   1111    11111        2


Q ss_pred             cccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       174 ~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      |..|.+..+++|+..|||..-|++- ..|-|..+|-
T Consensus       183 fpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp  217 (353)
T COG4257         183 FPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDP  217 (353)
T ss_pred             eccCCCCCCcceEECCCCcEEEEec-cccceEEccc
Confidence            2234456789999999999877766 4566766655

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.20  E-value=4.7  Score=36.40  Aligned_cols=126  Identities=12%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .-+.+|+++||.++|++.....+.|..++.+    .+++..+...|.                              +-+
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l~g~------------------------------~D~   67 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD----GKVLRRIPLDGF------------------------------GDY   67 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-------------------------------SSE
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC----CCEEEEEeCCCC------------------------------CCc
Confidence            3589999999999888887778888777652    456776766531                              468


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .+|++--+|+ ++++.|-.+.+..+..+.   ++..   ++..+      ...+..    +.......+-.+|+++|.+.
T Consensus        68 EgI~y~g~~~-~vl~~Er~~~L~~~~~~~---~~~~---~~~~~------~~~~~l----~~~~~~N~G~EGla~D~~~~  130 (248)
T PF06977_consen   68 EGITYLGNGR-YVLSEERDQRLYIFTIDD---DTTS---LDRAD------VQKISL----GFPNKGNKGFEGLAYDPKTN  130 (248)
T ss_dssp             EEEEE-STTE-EEEEETTTTEEEEEEE-------TT-----EEE------EEEEE-------S---SS--EEEEEETTTT
T ss_pred             eeEEEECCCE-EEEEEcCCCcEEEEEEec---cccc---cchhh------ceEEec----ccccCCCcceEEEEEcCCCC
Confidence            8899987775 344455222221111110   0100   01111      000000    10001123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .||++.+ ..-..+|.+.
T Consensus       131 ~L~v~kE-~~P~~l~~~~  147 (248)
T PF06977_consen  131 RLFVAKE-RKPKRLYEVN  147 (248)
T ss_dssp             EEEEEEE-SSSEEEEEEE
T ss_pred             EEEEEeC-CCChhhEEEc
Confidence            9998873 4445556553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=93.19  E-value=0.46  Score=47.22  Aligned_cols=64  Identities=20%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         29 DKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        29 ~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      +++++.+...+++|+..+|..++. +|+|.+||....  ....  ...                                
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~-DgSiiLyD~~~~--~t~~--~ka--------------------------------  298 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCE-DGSIILYDTTRG--VTLL--AKA--------------------------------  298 (545)
T ss_pred             EecCCcceEEecCcccceEEEEec-CCeEEEEEcCCC--eeee--eee--------------------------------
Confidence            357778999999999999998885 899999997532  1111  111                                


Q ss_pred             CCCceEEEEccCCCEEEEEcC
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~ne  129 (290)
                      .--|.+++.||+|..+.|.|+
T Consensus       299 ~~~P~~iaWHp~gai~~V~s~  319 (545)
T PF11768_consen  299 EFIPTLIAWHPDGAIFVVGSE  319 (545)
T ss_pred             cccceEEEEcCCCcEEEEEcC
Confidence            136889999999999999887

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=93.08  E-value=9  Score=37.08  Aligned_cols=20  Identities=15%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             CCcceEEEccCCCEEEEEcC
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~  276 (290)
                      +.|++++..|||-.|+..++
T Consensus       367 gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         367 GRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             CcccceEECCCCeEEEeecC
Confidence            47999999999999988876

>KOG0308|consensus

Probab=93.06  E-value=1.3  Score=44.72  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ..+++|-.+.| +++|++...+.|++||-...   +.+-.+. |+                              ...+|
T Consensus       173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---~kimkLr-GH------------------------------TdNVr  217 (735)
T KOG0308|consen  173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---KKIMKLR-GH------------------------------TDNVR  217 (735)
T ss_pred             ceeeeecCCcc-eEEEecCcccceEEeccccc---cceeeee-cc------------------------------ccceE
Confidence            57889999988 66677777899999996542   2221111 21                              15789


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      -+.+++||+++..++.               +| ++..|++   -+++-+.+...         ....+-++..+|+=.+
T Consensus       218 ~ll~~dDGt~~ls~sS---------------Dg-tIrlWdL---gqQrCl~T~~v---------H~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  218 VLLVNDDGTRLLSASS---------------DG-TIRLWDL---GQQRCLATYIV---------HKEGVWALQSSPSFTH  269 (735)
T ss_pred             EEEEcCCCCeEeecCC---------------Cc-eEEeeec---cccceeeeEEe---------ccCceEEEeeCCCcce
Confidence            9999999999998765               22 3333332   22222332111         0112445778899999


Q ss_pred             EEEEeCCCCcEEEEEecCCCC
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAH  214 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~  214 (290)
                      +|.++| ++.|..=|+.++..
T Consensus       270 vYsG~r-d~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  270 VYSGGR-DGNIYRTDLRNPAK  289 (735)
T ss_pred             EEecCC-CCcEEecccCCchh
Confidence            999995 67788888876543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=93.05  E-value=0.43  Score=36.27  Aligned_cols=18  Identities=22%  Similarity=0.135  Sum_probs=15.6

Q ss_pred             CcceEEEccCCCEEEEEc
Q psy11412        258 SSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van  275 (290)
                      .|+++++|||+..|+||-
T Consensus        58 fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   58 FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             SEEEEEE-TTSSEEEEEE
T ss_pred             ccCeEEEcCCCCEEEEEe
Confidence            699999999999999983

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=92.97  E-value=1.9  Score=43.24  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeec
Q psy11412         42 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG   77 (290)
Q Consensus        42 pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g   77 (290)
                      -||++||+.+  +++|.++|..++..++.++.+...
T Consensus        20 TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~   53 (521)
T PF09826_consen   20 TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLD   53 (521)
T ss_pred             ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecC
Confidence            3999999998  589999999776677787776554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.92  E-value=0.66  Score=35.23  Aligned_cols=19  Identities=21%  Similarity=0.058  Sum_probs=15.8

Q ss_pred             CCceEEEEccCCCEEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSS  128 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~n  128 (290)
                      ..|.+|++|+|++.+.|+.
T Consensus        57 ~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   57 YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             SSEEEEEE-TTSSEEEEEE
T ss_pred             CccCeEEEcCCCCEEEEEe
Confidence            4799999999999999864

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.74  E-value=2.7  Score=42.10  Aligned_cols=20  Identities=20%  Similarity=0.109  Sum_probs=16.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCC
Q psy11412         34 MVTDILISLDDRYLYTSNWM   53 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~   53 (290)
                      .|..+.++|....+|++...
T Consensus       351 RpEgi~~~p~~g~vY~a~T~  370 (524)
T PF05787_consen  351 RPEGITVNPDDGEVYFALTN  370 (524)
T ss_pred             CccCeeEeCCCCEEEEEEec
Confidence            57789999999999998643

>KOG1408|consensus

Probab=92.71  E-value=1.4  Score=45.23  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .-+.+++.|.-+++++++- +..|++|+++.+   +.....+..     .              .+         -+.+-
T Consensus       598 TlYDm~Vdp~~k~v~t~cQ-Drnirif~i~sg---Kq~k~FKgs-----~--------------~~---------eG~lI  645 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQ-DRNIRIFDIESG---KQVKSFKGS-----R--------------DH---------EGDLI  645 (1080)
T ss_pred             eEEEeeeCCCcceEEEEec-ccceEEEecccc---ceeeeeccc-----c--------------cC---------CCceE
Confidence            4568999999999988885 789999999763   222222111     0              00         13456


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      -+.+.|.|-+++.+..                +.++..+   ||....-+++.-     |    ....+.++.|++|=|+
T Consensus       646 Kv~lDPSgiY~atScs----------------dktl~~~---Df~sgEcvA~m~-----G----HsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  646 KVILDPSGIYLATSCS----------------DKTLCFV---DFVSGECVAQMT-----G----HSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             EEEECCCccEEEEeec----------------CCceEEE---Eeccchhhhhhc-----C----cchheeeeeecccchh
Confidence            6889999987776544                2233322   322222232211     1    1245778999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      |.... +++-|.||.+.
T Consensus       698 lISvs-gDgCIFvW~lp  713 (1080)
T KOG1408|consen  698 LISVS-GDGCIFVWKLP  713 (1080)
T ss_pred             heeec-CCceEEEEECc
Confidence            98666 89999999984

>KOG2106|consensus

Probab=92.40  E-value=0.67  Score=45.53  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=43.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ..-...+.+||||.+|+++.- ++.|.+|.++..++.  ...+  +                            .--|+.
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g~~--y~r~--~----------------------------k~~gs~  493 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSANGRK--YSRV--G----------------------------KCSGSP  493 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecC-CCeEEEEEECCCCcE--EEEe--e----------------------------eecCce
Confidence            334557899999999999874 899999999764422  1111  1                            001245


Q ss_pred             ceEEEEccCCCEEEE
Q psy11412        112 SQMFQLSLDGKRIYV  126 (290)
Q Consensus       112 Pr~vafsPdG~~lYv  126 (290)
                      ..|+-||+|+++|-.
T Consensus       494 ithLDwS~Ds~~~~~  508 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVS  508 (626)
T ss_pred             eEEeeecCCCceEEe
Confidence            688999999997764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.40  E-value=2.4  Score=41.63  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      |+.|.+..  ++.|.+||+..   .+.+.++.+..                                 ++.+.+|+||.+
T Consensus       117 G~LL~~~~--~~~i~~yDw~~---~~~i~~i~v~~---------------------------------vk~V~Ws~~g~~  158 (443)
T PF04053_consen  117 GNLLGVKS--SDFICFYDWET---GKLIRRIDVSA---------------------------------VKYVIWSDDGEL  158 (443)
T ss_dssp             SSSEEEEE--TTEEEEE-TTT-----EEEEESS-E----------------------------------EEEEE-TTSSE
T ss_pred             CcEEEEEC--CCCEEEEEhhH---cceeeEEecCC---------------------------------CcEEEEECCCCE
Confidence            99998886  45799999863   56777775421                                 478999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ++.++.
T Consensus       159 val~t~  164 (443)
T PF04053_consen  159 VALVTK  164 (443)
T ss_dssp             EEEE-S
T ss_pred             EEEEeC
Confidence            988865

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=92.40  E-value=0.5  Score=27.63  Aligned_cols=26  Identities=8%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQY   60 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~   60 (290)
                      .|++|+++++| .|||++.+...|.+|
T Consensus         3 ~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            69999999655 578999988888765

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1332|consensus

Probab=92.36  E-value=8.3  Score=34.91  Aligned_cols=40  Identities=18%  Similarity=0.461  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI   74 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i   74 (290)
                      ..|++.++==|++|++++ .+++|++|.+...+...++.++
T Consensus        13 ~IHda~lDyygkrlATcs-SD~tVkIf~v~~n~~s~ll~~L   52 (299)
T KOG1332|consen   13 MIHDAQLDYYGKRLATCS-SDGTVKIFEVRNNGQSKLLAEL   52 (299)
T ss_pred             hhhHhhhhhhcceeeeec-CCccEEEEEEcCCCCceeeeEe
Confidence            456666666699998776 4899999999875543555544

>KOG2445|consensus

Probab=92.25  E-value=5.1  Score=37.30  Aligned_cols=43  Identities=9%  Similarity=0.122  Sum_probs=32.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeec
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLG   77 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g   77 (290)
                      ..+.+.|++-||+++++. .+++|.|||.++ .++=.+...+..+
T Consensus        15 lihdVs~D~~GRRmAtCS-sDq~vkI~d~~~~s~~W~~Ts~Wrah   58 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCS-SDQTVKIWDSTSDSGTWSCTSSWRAH   58 (361)
T ss_pred             eeeeeeecccCceeeecc-CCCcEEEEeccCCCCceEEeeeEEec
Confidence            588999999999998665 589999999754 3444566666665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.08  E-value=5.5  Score=42.75  Aligned_cols=118  Identities=18%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             ceEEEEEcCCCCEEEEEeC--CCC---eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         34 MVTDILISLDDRYLYTSNW--MHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~--~~g---~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .-..|+.--||.|.+|+..  ..|   .++||+-+  +.+..+.+ ..                                
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE-~v--------------------------------  255 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSE-PV--------------------------------  255 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccc-cC--------------------------------
Confidence            5567889999999999876  333   67777642  22221111 00                                


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      -+--..+++-|.|.+++.+....+..++.+|..   +|-.-.     .|.    +   +.       -+.......+..+
T Consensus       256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr---NGLrhg-----eF~----l---~~-------~~~~~~v~~l~Wn  313 (928)
T PF04762_consen  256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER---NGLRHG-----EFT----L---RF-------DPEEEKVIELAWN  313 (928)
T ss_pred             CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec---CCcEee-----eEe----c---CC-------CCCCceeeEEEEC
Confidence            012234889999999998887666677766643   221100     000    0   00       0011245668888


Q ss_pred             cCCCEEEEEeCCCCcEEEEEec
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +|+..|++-.  ++.|.+|-..
T Consensus       314 ~ds~iLAv~~--~~~vqLWt~~  333 (928)
T PF04762_consen  314 SDSEILAVWL--EDRVQLWTRS  333 (928)
T ss_pred             CCCCEEEEEe--cCCceEEEee
Confidence            8888887754  4457777553

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.66  E-value=1.8  Score=40.05  Aligned_cols=112  Identities=12%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..-.++++|+-++||++..-               ...+..++.    ....++++|...+        ..+.+|...-+
T Consensus        87 nvS~LTynp~~rtLFav~n~---------------p~~iVElt~----~GdlirtiPL~g~--------~DpE~Ieyig~  139 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNK---------------PAAIVELTK----EGDLIRTIPLTGF--------SDPETIEYIGG  139 (316)
T ss_pred             cccceeeCCCcceEEEecCC---------------CceEEEEec----CCceEEEeccccc--------CChhHeEEecC
Confidence            46679999999999987541               111211111    1234555554322        23556888889


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEee--EEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~--~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      |+|+.+-. .+.++.++.++.......+.  .++.|..                  ++.        ..+=.++|.+|..
T Consensus       140 n~fvi~dE-R~~~l~~~~vd~~t~~~~~~~~~i~L~~~------------------~k~--------N~GfEGlA~d~~~  192 (316)
T COG3204         140 NQFVIVDE-RDRALYLFTVDADTTVISAKVQKIPLGTT------------------NKK--------NKGFEGLAWDPVD  192 (316)
T ss_pred             CEEEEEeh-hcceEEEEEEcCCccEEeccceEEecccc------------------CCC--------CcCceeeecCCCC
Confidence            99865554 57889999985322211111  3444431                  000        0145789999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++||+|-+
T Consensus       193 ~~l~~aKE  200 (316)
T COG3204         193 HRLFVAKE  200 (316)
T ss_pred             ceEEEEEc
Confidence            99999854

>KOG0267|consensus

Probab=91.41  E-value=0.24  Score=50.30  Aligned_cols=102  Identities=18%  Similarity=0.308  Sum_probs=62.3

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEecCCC-------C---ceEeeEEeeCcee---cCCCceEEecCCCCCCCCCcc
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------H---PVLVGQIFLGGKI---QSDSGVTVIDDPELDKQPDPV  248 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~-------~---~~~v~~i~~Gg~~---~~~~~v~~~~~~~~~~~~~~~  248 (290)
                      ...+.|+++.+.|.++. .+++|.+||+...-       +   ...+..-|.|.-+   +.|.+..+||.+.+.-..   
T Consensus        73 IeSl~f~~~E~Llaags-asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---  148 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGS-ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---  148 (825)
T ss_pred             ceeeecCcchhhhcccc-cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee---
Confidence            45688999988777665 67899999995311       0   0112222222211   455667888865432111   


Q ss_pred             eeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc---ccCCCC
Q psy11412        249 IIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK---EIYPDL  289 (290)
Q Consensus       249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~---~~~~~~  289 (290)
                      .++|.  .+..+-+.|+|||+++...++  ...-||.   +|-+++
T Consensus       149 ~~~s~--~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef  192 (825)
T KOG0267|consen  149 TYKSH--TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF  192 (825)
T ss_pred             eecCC--cceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence            11221  124688899999999999987  7778887   665543

>KOG2314|consensus

Probab=91.39  E-value=2.1  Score=42.65  Aligned_cols=116  Identities=20%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412         36 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  115 (290)
Q Consensus        36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v  115 (290)
                      .-+.+||-|.||++=.  ...|.+|-=.+=   ..+...                       +|          .+.+-+
T Consensus       214 tyv~wSP~GTYL~t~H--k~GI~lWGG~~f---~r~~RF-----------------------~H----------p~Vq~i  255 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFH--KQGIALWGGESF---DRIQRF-----------------------YH----------PGVQFI  255 (698)
T ss_pred             eeEEecCCceEEEEEe--ccceeeecCccH---HHHHhc-----------------------cC----------CCceee
Confidence            3588999999996443  456888853221   111111                       01          367889


Q ss_pred             EEccCCCEEEEEcCC--CCCcceeecccccCCCceeecceeeeeeecccccccCc--cccCccccCCCCceeEEEEccCC
Q psy11412        116 QLSLDGKRIYVSSSL--FSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL--SSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       116 afsPdG~~lYv~nel--~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~--~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      .|||..++|..=+-.  ...++       ..++..+.+||+.+   ....++.+.  .....|       | =...|-|+
T Consensus       256 dfSP~EkYLVT~s~~p~~~~~~-------d~e~~~l~IWDI~t---G~lkrsF~~~~~~~~~W-------P-~frWS~Dd  317 (698)
T KOG2314|consen  256 DFSPNEKYLVTYSPEPIIVEED-------DNEGQQLIIWDIAT---GLLKRSFPVIKSPYLKW-------P-IFRWSHDD  317 (698)
T ss_pred             ecCCccceEEEecCCccccCcc-------cCCCceEEEEEccc---cchhcceeccCCCcccc-------c-eEEeccCC
Confidence            999999988763321  11111       12456677777654   223333222  111112       1 16789999


Q ss_pred             CEEEEEeCCCCcEEEEEe
Q psy11412        192 RYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv  209 (290)
                      ++++--  ..++|+||+.
T Consensus       318 Ky~Arm--~~~sisIyEt  333 (698)
T KOG2314|consen  318 KYFARM--TGNSISIYET  333 (698)
T ss_pred             ceeEEe--ccceEEEEec
Confidence            976533  4579999975

>KOG4283|consensus

Probab=91.35  E-value=7.8  Score=36.02  Aligned_cols=75  Identities=21%  Similarity=0.346  Sum_probs=45.2

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee-cccccCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK-GRRFTGS  258 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~  258 (290)
                      ..+-++..||--.++.++.-.++.|.+|||....     +-            ..++|.......|   .++ .+...+-
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-----gc------------f~~lD~hn~k~~p---~~~~n~ah~gk  248 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-----GC------------FRVLDQHNTKRPP---ILKTNTAHYGK  248 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeeccc-----ce------------eEEeecccCccCc---cccccccccce
Confidence            3567788999988877776689999999995321     10            1112211100011   111 1112245


Q ss_pred             cceEEEccCCCEEEEE
Q psy11412        259 SQMFQLSLDGKRIYVS  274 (290)
Q Consensus       259 P~~~a~sPDG~~L~Va  274 (290)
                      .++++++.||++|+..
T Consensus       249 vngla~tSd~~~l~~~  264 (397)
T KOG4283|consen  249 VNGLAWTSDARYLASC  264 (397)
T ss_pred             eeeeeecccchhhhhc
Confidence            8999999999998865

>KOG1034|consensus

Probab=91.30  E-value=1.1  Score=41.96  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..+-.|.||+||+++..+. .+.+|.+|++.
T Consensus       182 deVLSvD~~~~gd~i~ScG-mDhslk~W~l~  211 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCG-MDHSLKLWRLN  211 (385)
T ss_pred             CcEEEEEEcCCCCeeeccC-CcceEEEEecC
Confidence            4677899999999977666 78899999996

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=91.29  E-value=9.1  Score=37.05  Aligned_cols=27  Identities=15%  Similarity=0.078  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      +|..+++-||| .+.|+-...|.|+++.
T Consensus        68 ~p~~~~~lP~G-~~~v~er~~G~l~~i~   94 (399)
T COG2133          68 HPWGLARLPDG-VLLVTERPTGRLRLIS   94 (399)
T ss_pred             CchhheecCCc-eEEEEccCCccEEEec
Confidence            88999999999 5555555457777765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=90.91  E-value=2.6  Score=39.66  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      .|..||+.+ .++.|.++|..+   .+.+.++++++
T Consensus       319 ~g~~l~~~~-~~G~l~~~d~~t---G~~~~~~~~~~  350 (377)
T TIGR03300       319 VGGYLVVGD-FEGYLHWLSRED---GSFVARLKTDG  350 (377)
T ss_pred             ECCEEEEEe-CCCEEEEEECCC---CCEEEEEEcCC
Confidence            467899988 678999998643   46666766654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1520|consensus

Probab=90.47  E-value=10  Score=36.22  Aligned_cols=20  Identities=20%  Similarity=0.451  Sum_probs=17.8

Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      +.|-+++|+..|.-||++..
T Consensus       115 GRPLGl~f~~~ggdL~VaDA  134 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADA  134 (376)
T ss_pred             CCcceEEeccCCCeEEEEec
Confidence            46999999999999999865

>KOG1272|consensus

Probab=90.28  E-value=1.7  Score=42.41  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=26.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .|+++.++.+||+|+..+. -|-|..+|...
T Consensus       131 GPY~~~ytrnGrhlllgGr-KGHlAa~Dw~t  160 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGR-KGHLAAFDWVT  160 (545)
T ss_pred             CCeeeeecCCccEEEecCC-ccceeeeeccc
Confidence            7999999999999998775 78999999865

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.11  E-value=8.6  Score=34.12  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      || .||+-.|..+.|..+|.   ...++++-|..-+...      ..+            ..+.+ .+-++++|+.|++.
T Consensus       185 dG-~lyANVw~t~~I~rI~p---~sGrV~~widlS~L~~------~~~------------~~~~~-~nvlNGIA~~~~~~  241 (262)
T COG3823         185 DG-ELYANVWQTTRIARIDP---DSGRVVAWIDLSGLLK------ELN------------LDKSN-DNVLNGIAHDPQQD  241 (262)
T ss_pred             cc-EEEEeeeeecceEEEcC---CCCcEEEEEEccCCch------hcC------------ccccc-cccccceeecCcCC
Confidence            66 57999998888887754   4567777776644210      000            00011 12479999999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      ++|++..
T Consensus       242 r~~iTGK  248 (262)
T COG3823         242 RFLITGK  248 (262)
T ss_pred             eEEEecC
Confidence            9999864

>KOG1007|consensus

Probab=89.84  E-value=7.1  Score=36.17  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             EEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC
Q psy11412         14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE   93 (290)
Q Consensus        14 ~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~   93 (290)
                      -+|+.+++-...+ .++-+..+..+.|.|.-+++.+++..+|.|++||.+....|..  ++                   
T Consensus       197 ~~D~RT~~~~~sI-~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~--el-------------------  254 (370)
T KOG1007|consen  197 FWDLRTMKKNNSI-EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ--EL-------------------  254 (370)
T ss_pred             EEEccchhhhcch-hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc--cc-------------------
Confidence            3444444433333 3344456889999999999999999999999999876433321  11                   


Q ss_pred             CcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412         94 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  130 (290)
Q Consensus        94 ~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel  130 (290)
                         .++.         .....+.|+|-...|.++...
T Consensus       255 ---~~Hs---------HWvW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  255 ---PGHS---------HWVWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             ---CCCc---------eEEEEEEecCccceEEEecCC
Confidence               0111         356678888888888877653

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=89.63  E-value=0.84  Score=28.40  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      .|.++++++++++||-++...+.|...+++
T Consensus        10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            688999999999999999988899888875

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG4283|consensus

Probab=89.62  E-value=18  Score=33.77  Aligned_cols=147  Identities=19%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      -||-|+++.|++-.-   +.++.++.-+.||=  -..|.++...+-+|++.|+..+.--..+    .|            
T Consensus       126 lKVWDtnTlQ~a~~F---~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L----sG------------  186 (397)
T KOG4283|consen  126 LKVWDTNTLQEAVDF---KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL----SG------------  186 (397)
T ss_pred             EEEeecccceeeEEe---ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee----cc------------
Confidence            578888888877665   66666666566664  3567777777788999998763211111    11            


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCC---CcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS---PWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~---~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                                      ++  .+.-.+.++|...++..+....+   .||...     ..| -+...|.-     +..+ .
T Consensus       187 ----------------Hr--~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr-----asg-cf~~lD~h-----n~k~-~  236 (397)
T KOG4283|consen  187 ----------------HR--DGVLAVEWSPSSEWVLATGSADGAIRLWDIRR-----ASG-CFRVLDQH-----NTKR-P  236 (397)
T ss_pred             ----------------cc--CceEEEEeccCceeEEEecCCCceEEEEEeec-----ccc-eeEEeecc-----cCcc-C
Confidence                            21  56777889999988776665322   233210     011 11111110     0000 1


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |... ..  ....+...+++++.||++|+.-. .++.+++|....
T Consensus       237 p~~~-~n--~ah~gkvngla~tSd~~~l~~~g-td~r~r~wn~~~  277 (397)
T KOG4283|consen  237 PILK-TN--TAHYGKVNGLAWTSDARYLASCG-TDDRIRVWNMES  277 (397)
T ss_pred             cccc-cc--ccccceeeeeeecccchhhhhcc-CccceEEeeccc
Confidence            1110 00  01123577899999999998766 789999998854

>KOG0301|consensus

Probab=89.36  E-value=5.6  Score=40.58  Aligned_cols=106  Identities=19%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+|++....+++ |.++.| +-++.+|.+.+-.   ..   .-|                     |+         ..+.
T Consensus       103 nVC~ls~~~~~~-~iSgSW-D~TakvW~~~~l~---~~---l~g---------------------H~---------asVW  144 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSW-DSTAKVWRIGELV---YS---LQG---------------------HT---------ASVW  144 (745)
T ss_pred             ceeeeecCCcCc-eEeccc-ccceEEecchhhh---cc---cCC---------------------cc---------hhee
Confidence            688888888888 667777 6699999875421   10   011                     11         3566


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+++-|++  .|++...+.               .+..|...     ..+++     +.+    ....++++++=+++.|
T Consensus       145 Av~~l~e~--~~vTgsaDK---------------tIklWk~~-----~~l~t-----f~g----HtD~VRgL~vl~~~~f  193 (745)
T KOG0301|consen  145 AVASLPEN--TYVTGSADK---------------TIKLWKGG-----TLLKT-----FSG----HTDCVRGLAVLDDSHF  193 (745)
T ss_pred             eeeecCCC--cEEeccCcc---------------eeeeccCC-----chhhh-----hcc----chhheeeeEEecCCCe
Confidence            78888888  577765221               22222211     11111     111    1246888999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      |-++|  ++.|..|+++
T Consensus       194 lScsN--Dg~Ir~w~~~  208 (745)
T KOG0301|consen  194 LSCSN--DGSIRLWDLD  208 (745)
T ss_pred             EeecC--CceEEEEecc
Confidence            98887  7899999994

>KOG0276|consensus

Probab=89.30  E-value=8.9  Score=38.95  Aligned_cols=116  Identities=11%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ++-.|+|.|...--++++.-+.+|.||.+..+   ...-++. |+                              ..|+.
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---~~nfTl~-gH------------------------------ekGVN  187 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---HPNFTLE-GH------------------------------EKGVN  187 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCC---CCceeee-cc------------------------------ccCcc
Confidence            45679999976555555445899999998542   2222221 21                              15888


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+.|=+.|..=|..+.              .|+..+.+||-.   ..+-+++     .+|    .....+.+.|+|-=-.
T Consensus       188 ~Vdyy~~gdkpylIsg--------------aDD~tiKvWDyQ---tk~CV~T-----LeG----Ht~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  188 CVDYYTGGDKPYLISG--------------ADDLTIKVWDYQ---TKSCVQT-----LEG----HTNNVSFVFFHPELPI  241 (794)
T ss_pred             eEEeccCCCcceEEec--------------CCCceEEEeecc---hHHHHHH-----hhc----ccccceEEEecCCCcE
Confidence            8999888877787665              234344444422   2222332     112    1234667888887655


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                       ..|+-.+++|.+|.-.
T Consensus       242 -iisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  242 -IISGSEDGTVRIWNSK  257 (794)
T ss_pred             -EEEecCCccEEEecCc
Confidence             4555589999999763

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.22  E-value=22  Score=34.27  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             CCceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        179 RSMVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       179 ~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      ++.+.+|++...-.+||++.+ +--|+.|+.
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~A  236 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEE-DVGIWRYDA  236 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEET-TTEEEEEES
T ss_pred             CCcceEEEEecccCCEEEecC-ccEEEEEec
Confidence            356888999999999999984 455777765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0300|consensus

Probab=88.86  E-value=8.9  Score=35.96  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=74.3

Q ss_pred             EEEEecCCCccCCCCCCCCCCCc---eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAM---VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~---p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      ..+-|++++.++..+     .++   -.++.-.|.-|.+.++. -+-+.++||+.+ + ...+. +.-|+          
T Consensus       296 AnlwDVEtge~v~~L-----tGHd~ELtHcstHptQrLVvTsS-rDtTFRLWDFRe-a-I~sV~-VFQGH----------  356 (481)
T KOG0300|consen  296 ANLWDVETGEVVNIL-----TGHDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFRE-A-IQSVA-VFQGH----------  356 (481)
T ss_pred             ceeeeeccCceeccc-----cCcchhccccccCCcceEEEEec-cCceeEeccchh-h-cceee-eeccc----------
Confidence            356678887776643     332   33566777766665555 477999999974 2 22221 12221          


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                                          ...+..++|..|.+  .|++.               ++.++.+|++...  +..++++- 
T Consensus       357 --------------------tdtVTS~vF~~dd~--vVSgS---------------DDrTvKvWdLrNM--RsplATIR-  396 (481)
T KOG0300|consen  357 --------------------TDTVTSVVFNTDDR--VVSGS---------------DDRTVKVWDLRNM--RSPLATIR-  396 (481)
T ss_pred             --------------------ccceeEEEEecCCc--eeecC---------------CCceEEEeeeccc--cCcceeee-
Confidence                                13566688888877  44443               3445555665442  11222211 


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                               .......|++|.-+..+..-- .+..|.+||+.
T Consensus       397 ---------tdS~~NRvavs~g~~iIAiPh-DNRqvRlfDln  428 (481)
T KOG0300|consen  397 ---------TDSPANRVAVSKGHPIIAIPH-DNRQVRLFDLN  428 (481)
T ss_pred             ---------cCCccceeEeecCCceEEecc-CCceEEEEecC
Confidence                     112344578888777766554 56689999984

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=88.72  E-value=0.91  Score=28.24  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .|.+++|++++++||-++...+.|...++.
T Consensus        10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            456799999999999999988888888774

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=88.64  E-value=13  Score=31.90  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=19.0

Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         40 ISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        40 ~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ..+++.+||+++ .++.|.+||..+
T Consensus        32 ~~~~~~~v~~~~-~~~~l~~~d~~t   55 (238)
T PF13360_consen   32 AVPDGGRVYVAS-GDGNLYALDAKT   55 (238)
T ss_dssp             EEEETTEEEEEE-TTSEEEEEETTT
T ss_pred             EEEeCCEEEEEc-CCCEEEEEECCC
Confidence            335788899986 478999999865

...

>KOG4227|consensus

Probab=88.56  E-value=6.2  Score=37.92  Aligned_cols=119  Identities=16%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ..+++|.-..++||... ..++|...|++...      ++++...                          ....+.+.|
T Consensus       108 IF~L~F~~~N~~~~SG~-~~~~VI~HDiEt~q------si~V~~~--------------------------~~~~~~VY~  154 (609)
T KOG4227|consen  108 IFSLEFDLENRFLYSGE-RWGTVIKHDIETKQ------SIYVANE--------------------------NNNRGDVYH  154 (609)
T ss_pred             eEEEEEccCCeeEecCC-CcceeEeeecccce------eeeeecc--------------------------cCcccceee
Confidence            33799999999999664 47899999986521      1222100                          001146788


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc-cccccCccccCccccCC--CCceeEEEEccCC
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN-EMRSMPLSSLGSWKYPA--RSMVTDILISLDD  191 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~--~~~~~~i~~SpDG  191 (290)
                      |..||-..+|.++..                .+.+..|+..+   ++ .+..         .++.  +..-+.+-|.|-.
T Consensus       155 m~~~P~DN~~~~~t~----------------~~~V~~~D~Rd---~~~~~~~---------~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  155 MDQHPTDNTLIVVTR----------------AKLVSFIDNRD---RQNPISL---------VLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             cccCCCCceEEEEec----------------CceEEEEeccC---CCCCCce---------eeecCCCccceeeeecCCC
Confidence            999999888888654                23444455433   11 1110         0111  1233557799987


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAH  214 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~  214 (290)
                      -.|...+-..+.+-+||+..++.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             ceeEEeccccCCCCceeeccccc
Confidence            77666555677889999965433

>KOG0300|consensus

Probab=88.47  E-value=7.2  Score=36.55  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=23.8

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ..+..+.|.-|-+.+  |.-.+.+|.|||+.+.
T Consensus       358 dtVTS~vF~~dd~vV--SgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  358 DTVTSVVFNTDDRVV--SGSDDRTVKVWDLRNM  388 (481)
T ss_pred             cceeEEEEecCCcee--ecCCCceEEEeeeccc
Confidence            456778999998864  4446889999999753

>KOG0281|consensus

Probab=88.46  E-value=2.1  Score=40.46  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=15.7

Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |.|++..+. ++.+|.+|+++.
T Consensus       329 d~kyIVsAS-gDRTikvW~~st  349 (499)
T KOG0281|consen  329 DDKYIVSAS-GDRTIKVWSTST  349 (499)
T ss_pred             ccceEEEec-CCceEEEEeccc
Confidence            566655554 899999999863

>KOG4547|consensus

Probab=88.43  E-value=18  Score=36.09  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=24.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ..+..++++|||+.|.++.|   +|.+||+.+
T Consensus       145 ~~~~sl~is~D~~~l~~as~---~ik~~~~~~  173 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTASR---QIKVLDIET  173 (541)
T ss_pred             CccceEEEcCCCCEEEeccc---eEEEEEccC
Confidence            45678999999999998875   899999965

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.31  E-value=3  Score=40.90  Aligned_cols=52  Identities=8%  Similarity=0.029  Sum_probs=34.3

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      |-+-...-...|++++....   +++.-|..-+-.|-|+-.|.....+|.+.++.
T Consensus        92 Gvf~~l~~~~aPAgs~I~~q---al~~ppv~wa~~~~gqp~~alglsngqv~v~q  143 (733)
T COG4590          92 GVFWSLRSVSAPAGSPIQTQ---ALGFPPVLWAQTPPGQPWFALGLSNGQVAVVQ  143 (733)
T ss_pred             cEEEEecccCCCCCCchhhh---hcCCCCcccccCCCCCceEEEeccCCeEEEEe
Confidence            33333333346677766665   56666666667777888888888888887775

>KOG0307|consensus

Probab=88.12  E-value=2.3  Score=45.30  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCce----------------ecCCCceEEecCCCCCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK----------------IQSDSGVTVIDDPELDK  243 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~----------------~~~~~~v~~~~~~~~~~  243 (290)
                      +.+.++.|++.+.-|.+|+-.++.|.+||+.++..+-..+....-..                ....+..++||.+.+. 
T Consensus       117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-  195 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-  195 (1049)
T ss_pred             CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-
Confidence            45778999999997778877889999999987654432221100011                1566789999987642 


Q ss_pred             CCCcc-eeecccccCCcceEEEccCCC-EEEEEcC-----CCCCCC
Q psy11412        244 QPDPV-IIKGRRFTGSSQMFQLSLDGK-RIYVSSS-----LFSPWD  282 (290)
Q Consensus       244 ~~~~~-~~~~~~~~~~P~~~a~sPDG~-~L~Van~-----~~~~~~  282 (290)
                       |-.+ +..+.+  .+...+++.||+. +|++|+.     .+.-||
T Consensus       196 -pii~ls~~~~~--~~~S~l~WhP~~aTql~~As~dd~~PviqlWD  238 (1049)
T KOG0307|consen  196 -PIIKLSDTPGR--MHCSVLAWHPDHATQLLVASGDDSAPVIQLWD  238 (1049)
T ss_pred             -cccccccCCCc--cceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence             1111 111111  2456899999875 5666654     555677

>KOG0301|consensus

Probab=87.54  E-value=15  Score=37.71  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+.+.+++.-|++  .|+++..+-+|++|.-.     +.+.++ .||                              ..-
T Consensus       140 ~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----~~l~tf-~gH------------------------------tD~  181 (745)
T KOG0301|consen  140 TASVWAVASLPEN--TYVTGSADKTIKLWKGG-----TLLKTF-SGH------------------------------TDC  181 (745)
T ss_pred             chheeeeeecCCC--cEEeccCcceeeeccCC-----chhhhh-ccc------------------------------hhh
Confidence            3456788888888  45566678899999741     222221 121                              157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +|++++-+++.+|=+.|.                | .+..|+...    ..+..     ..+    ..+..+.|....++
T Consensus       182 VRgL~vl~~~~flScsND----------------g-~Ir~w~~~g----e~l~~-----~~g----htn~vYsis~~~~~  231 (745)
T KOG0301|consen  182 VRGLAVLDDSHFLSCSND----------------G-SIRLWDLDG----EVLLE-----MHG----HTNFVYSISMALSD  231 (745)
T ss_pred             eeeeEEecCCCeEeecCC----------------c-eEEEEeccC----ceeee-----eec----cceEEEEEEecCCC
Confidence            899999999998887664                2 333344311    01110     011    23578888866766


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..+..+. .++++.+|+..
T Consensus       232 ~~Ivs~g-EDrtlriW~~~  249 (745)
T KOG0301|consen  232 GLIVSTG-EDRTLRIWKKD  249 (745)
T ss_pred             CeEEEec-CCceEEEeecC
Confidence            6654444 78999999874

>KOG1214|consensus

Probab=87.44  E-value=13  Score=39.14  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=64.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+|+|+=-.+.+|-++-.+-+|+-=.+. +++++.+-.                              ++.   ..|.
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~-G~Ep~ti~n------------------------------~~L---~SPE 1071 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLE-GAEPETIVN------------------------------SGL---ISPE 1071 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCcccccccc-CCCCceeec------------------------------ccC---CCcc
Confidence            567889988899999888766666543332 233332210                              111   5789


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +||+.--+|.+|-+..+...+.+...     +|.           .++.+..      ++  +   -.|++|++.+=++.
T Consensus      1072 GiAVDh~~Rn~ywtDS~lD~IevA~L-----dG~-----------~rkvLf~------td--L---VNPR~iv~D~~rgn 1124 (1289)
T KOG1214|consen 1072 GIAVDHIRRNMYWTDSVLDKIEVALL-----DGS-----------ERKVLFY------TD--L---VNPRAIVVDPIRGN 1124 (1289)
T ss_pred             ceeeeeccceeeeeccccchhheeec-----CCc-----------eeeEEEe------ec--c---cCcceEEeecccCc
Confidence            99999999999998764333322111     111           1111110      01  1   13678999999999


Q ss_pred             EEEEeCCC
Q psy11412        194 LYTSNWMH  201 (290)
Q Consensus       194 Lyvs~r~~  201 (290)
                      ||-++|..
T Consensus      1125 LYwtDWnR 1132 (1289)
T KOG1214|consen 1125 LYWTDWNR 1132 (1289)
T ss_pred             eeeccccc
Confidence            99998753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.36  E-value=4.5  Score=38.58  Aligned_cols=16  Identities=38%  Similarity=0.555  Sum_probs=12.4

Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .+..|+||++|++...
T Consensus       231 ~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  231 SVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEEE-TTSSEEEEEEE
T ss_pred             EEEecCcccEEEEEEE
Confidence            6888999999998644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.33  E-value=1.2  Score=27.63  Aligned_cols=17  Identities=41%  Similarity=0.521  Sum_probs=12.0

Q ss_pred             eEEEEccCCCEEE-EEeC
Q psy11412        183 TDILISLDDRYLY-TSNW  199 (290)
Q Consensus       183 ~~i~~SpDGr~Ly-vs~r  199 (290)
                      ....+||||++|| ++++
T Consensus        12 ~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen   12 GSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             EEEEE-TTSSEEEEEEEC
T ss_pred             cCEEEecCCCEEEEEecC
Confidence            4578999999877 5554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0276|consensus

Probab=86.57  E-value=41  Score=34.42  Aligned_cols=169  Identities=11%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc----------------cCCCceEEecCCCCcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI----------------QSDSGVTVIDDPELDKQ   97 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~----------------~~~~~~~v~~~~~~~~~   97 (290)
                      .+-+|.|.|..-++..+-+ .|.|.+|+.+..   ..+.++.+-..+                +.+..|.|+...++...
T Consensus        15 RVKsVd~HPtePw~la~Ly-nG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV   90 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAALY-NGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV   90 (794)
T ss_pred             ceeeeecCCCCceEEEeee-cCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence            4557889999999987765 899999998652   233323221100                01233444444443321


Q ss_pred             CCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC
Q psy11412         98 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP  177 (290)
Q Consensus        98 ~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~  177 (290)
                      -.  |  ... -.-.|.++.||.-.++..++.                +-.+..|+-..   .....    ..++|    
T Consensus        91 ~~--F--eAH-~DyIR~iavHPt~P~vLtsSD----------------Dm~iKlW~we~---~wa~~----qtfeG----  138 (794)
T KOG0276|consen   91 KT--F--EAH-SDYIRSIAVHPTLPYVLTSSD----------------DMTIKLWDWEN---EWACE----QTFEG----  138 (794)
T ss_pred             EE--e--ecc-ccceeeeeecCCCCeEEecCC----------------ccEEEEeeccC---ceeee----eEEcC----
Confidence            00  0  000 046788999999886664432                22222222211   00000    01122    


Q ss_pred             CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceE----------eeEEeeCcee-----cCCCceEEecC
Q psy11412        178 ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL----------VGQIFLGGKI-----QSDSGVTVIDD  238 (290)
Q Consensus       178 ~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~----------v~~i~~Gg~~-----~~~~~v~~~~~  238 (290)
                      ..-.+-.|+|.|...--++|.-.+.+|.||.+-.+.....          +..++.|.+.     ++|-++.|||-
T Consensus       139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            1125778999996555566666899999999964322221          2222222111     67778999984

>KOG3914|consensus

Probab=86.45  E-value=11  Score=35.96  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ..+..|++-++ +.|..+. ||++|.+||+..
T Consensus       195 eFVS~isl~~~-~~LlS~s-GD~tlr~Wd~~s  224 (390)
T KOG3914|consen  195 EFVSTISLTDN-YLLLSGS-GDKTLRLWDITS  224 (390)
T ss_pred             hheeeeeeccC-ceeeecC-CCCcEEEEeccc
Confidence            35667777765 4466666 999999999975

>KOG0974|consensus

Probab=86.31  E-value=3.6  Score=43.56  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+..+.+|-||+++++.. .+-++++|++++...+..   ...|+                              ...+
T Consensus       176 G~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~~~~~---~~fgH------------------------------saRv  221 (967)
T KOG0974|consen  176 GSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSREVLGC---TGFGH------------------------------SARV  221 (967)
T ss_pred             CceEEEEEccCCcEEEEEe-cCcceeeeecccccccCc---ccccc------------------------------ccee
Confidence            4778899999999998776 588999999987332221   11111                              1578


Q ss_pred             eEEEEccCCCEEEEEcCCC--CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSLDGKRIYVSSSLF--SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~--~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ....|+|.  .++++.|.-  .-|+        .++..+.   +.+            ..       -+...-.++++++
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~--------~~~~~l~---~y~------------~h-------~g~~iw~~~~~~~  269 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWG--------VNGTQLE---VYD------------EH-------SGKGIWKIAVPIG  269 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEe--------cccceeh---hhh------------hh-------hhcceeEEEEcCC
Confidence            88999999  888887710  1111        0222211   111            00       0123345778888


Q ss_pred             CCEEEEEeCCCCcEEEEEec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      --.++++. .++++.+||.-
T Consensus       270 ~~~~vT~g-~Ds~lk~~~l~  288 (967)
T KOG0974|consen  270 VIIKVTGG-NDSTLKLWDLN  288 (967)
T ss_pred             ceEEEeec-cCcchhhhhhh
Confidence            87777777 68889999874

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.91  E-value=5.6  Score=37.15  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=43.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC------CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         34 MVTDILISLDDRYLYTSNWMH------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~------g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      -+.+|++.+||.+ |++..+.      ..|..++..  +..  +..+.+.....+.              ...  ..+.+
T Consensus        86 D~Egi~~~~~g~~-~is~E~~~~~~~~p~I~~~~~~--G~~--~~~~~vP~~~~~~--------------~~~--~~~~~  144 (326)
T PF13449_consen   86 DPEGIAVPPDGSF-WISSEGGRTGGIPPRIRRFDLD--GRV--IRRFPVPAAFLPD--------------ANG--TSGRR  144 (326)
T ss_pred             ChhHeEEecCCCE-EEEeCCccCCCCCCEEEEECCC--Ccc--cceEccccccccc--------------cCc--ccccc
Confidence            5668999666655 5677767      677777653  222  2222111000000              000  01233


Q ss_pred             cCCCceEEEEccCCCEEEEEcC
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~ne  129 (290)
                      ...|.+.|+++|||++||++.|
T Consensus       145 ~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  145 NNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             CCCCeEEEEECCCCCEEEEEEC
Confidence            4578999999999999999988

>KOG1587|consensus

Probab=85.24  E-value=42  Score=34.01  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH   67 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~   67 (290)
                      .+..+.|+|....+.+++..+|+|.+||+.....
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~  277 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD  277 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCC
Confidence            4567899999988888888899999999986544

>KOG0274|consensus

Probab=85.06  E-value=10  Score=38.15  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=71.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCce-------eeeEEeecccc----cCCCceEEecCCCCcCCCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-------LVGQIFLGGKI----QSDSGVTVIDDPELDKQPD   99 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~-------~~~~i~~g~~~----~~~~~~~v~~~~~~~~~~~   99 (290)
                      =.+.+..+++..-+.+| +++..+.++++||..++.-..       .+..+..+...    +.+..|.|-+-...    .
T Consensus       248 H~g~V~~l~~~~~~~~l-vsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~----~  322 (537)
T KOG0274|consen  248 HFGGVWGLAFPSGGDKL-VSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG----A  322 (537)
T ss_pred             CCCCceeEEEecCCCEE-EEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc----c
Confidence            34457788887644555 455568899999987754322       22222221110    01222222221100    0


Q ss_pred             cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412        100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR  179 (290)
Q Consensus       100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  179 (290)
                      -...... ....++.|.++  +..++..+.               ++ .+.+|++..   -+-+..     ..+    ..
T Consensus       323 ~l~l~~~-h~~~V~~v~~~--~~~lvsgs~---------------d~-~v~VW~~~~---~~cl~s-----l~g----H~  371 (537)
T KOG0274|consen  323 CLNLLRG-HTGPVNCVQLD--EPLLVSGSY---------------DG-TVKVWDPRT---GKCLKS-----LSG----HT  371 (537)
T ss_pred             eEEEecc-ccccEEEEEec--CCEEEEEec---------------Cc-eEEEEEhhh---ceeeee-----ecC----Cc
Confidence            0000000 12456667777  667776554               33 455555432   122221     111    11


Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ..++.+.+..- ..+|.+. .+.+|.+||+...
T Consensus       372 ~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  372 GRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTK  402 (537)
T ss_pred             ceEEEEEecCc-ceEEeee-eccceEeecCCch
Confidence            35666666554 7777766 7899999999754

>KOG4659|consensus

Probab=84.75  E-value=23  Score=39.20  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      .|.+|+|+.+| .||.++ + -.|+++|-
T Consensus       476 ~PkGIa~dk~g-~lYfaD-~-t~IR~iD~  501 (1899)
T KOG4659|consen  476 FPKGIAFDKMG-NLYFAD-G-TRIRVIDT  501 (1899)
T ss_pred             cCCceeEccCC-cEEEec-c-cEEEEecc
Confidence            58889999999 568776 2 36888765

>KOG0642|consensus

Probab=84.53  E-value=3.2  Score=41.29  Aligned_cols=27  Identities=19%  Similarity=0.485  Sum_probs=23.8

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      +-.+++++.|..+|... .+++|..|.+
T Consensus       347 Vl~v~v~~n~~~~ysgg-~Dg~I~~w~~  373 (577)
T KOG0642|consen  347 VLCVVVPSNGEHCYSGG-IDGTIRCWNL  373 (577)
T ss_pred             eEEEEecCCceEEEeec-cCceeeeecc
Confidence            45689999999999998 7999999966

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=84.07  E-value=58  Score=35.17  Aligned_cols=62  Identities=15%  Similarity=0.088  Sum_probs=42.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC---CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRD---TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d---~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ..+.++.+-+|...|+++-. +|.|.++..+.   ....+.++.+                                  .
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~-~Gdi~~~~~~~~~~~~~~E~VG~v----------------------------------d  120 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALA-SGDIILVREDPDPDEDEIEIVGSV----------------------------------D  120 (928)
T ss_pred             CcEEEEEeccCCCcEEEEEC-CceEEEEEccCCCCCceeEEEEEE----------------------------------c
Confidence            35677888888888877754 67888883321   1223333322                                  1


Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      .|...+++|||+..|+++..
T Consensus       121 ~GI~a~~WSPD~Ella~vT~  140 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTG  140 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeC
Confidence            57888999999999999875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.82  E-value=22  Score=34.26  Aligned_cols=18  Identities=28%  Similarity=0.174  Sum_probs=11.0

Q ss_pred             CceEEEEccCCCEEEEEc
Q psy11412        111 SSQMFQLSLDGKRIYVSS  128 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~n  128 (290)
                      ..-|=-|+|||++++...
T Consensus       239 ~~gHEfw~~DG~~i~y~~  256 (386)
T PF14583_consen  239 SVGHEFWVPDGSTIWYDS  256 (386)
T ss_dssp             EEEEEEE-TTSS-EEEEE
T ss_pred             ccccccccCCCCEEEEEe
Confidence            344556999998887653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.34  E-value=39  Score=31.46  Aligned_cols=123  Identities=11%  Similarity=0.097  Sum_probs=65.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...+++++||.++||+..-. .. .+.-++.  ++.++.++++.+-                              +-|.
T Consensus        87 nvS~LTynp~~rtLFav~n~-p~-~iVElt~--~GdlirtiPL~g~------------------------------~DpE  132 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNK-PA-AIVELTK--EGDLIRTIPLTGF------------------------------SDPE  132 (316)
T ss_pred             cccceeeCCCcceEEEecCC-Cc-eEEEEec--CCceEEEeccccc------------------------------CChh
Confidence            47889999999999987532 23 2223332  3556666655421                              4567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDGr  192 (290)
                      .|...-+|+++. +.|-...+-.+....   ++ .+......         .++.+.     ... ..+-.+++.+|..+
T Consensus       133 ~Ieyig~n~fvi-~dER~~~l~~~~vd~---~t-~~~~~~~~---------~i~L~~-----~~k~N~GfEGlA~d~~~~  193 (316)
T COG3204         133 TIEYIGGNQFVI-VDERDRALYLFTVDA---DT-TVISAKVQ---------KIPLGT-----TNKKNKGFEGLAWDPVDH  193 (316)
T ss_pred             HeEEecCCEEEE-EehhcceEEEEEEcC---Cc-cEEeccce---------EEeccc-----cCCCCcCceeeecCCCCc
Confidence            778777776544 344222222221111   11 11111110         111111     111 12456799999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .||++- ..+=+.+|-+.
T Consensus       194 ~l~~aK-Er~P~~I~~~~  210 (316)
T COG3204         194 RLFVAK-ERNPIGIFEVT  210 (316)
T ss_pred             eEEEEE-ccCCcEEEEEe
Confidence            999998 45566677663

>KOG0277|consensus

Probab=83.13  E-value=9.6  Score=34.70  Aligned_cols=117  Identities=17%  Similarity=0.167  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      -++..++||--.-|+.+..+++.+++||++.++....+   ....                               ...-
T Consensus       149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i---~ah~-------------------------------~Eil  194 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI---EAHN-------------------------------SEIL  194 (311)
T ss_pred             EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE---Eecc-------------------------------ceeE
Confidence            45678999988888888889999999999876543332   2210                               1122


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      ..-++.-.+.+.++..               .++.+..+|+...      + .|.....+    .+-..+.|.+||--+-
T Consensus       195 ~cdw~ky~~~vl~Tg~---------------vd~~vr~wDir~~------r-~pl~eL~g----h~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGG---------------VDNLVRGWDIRNL------R-TPLFELNG----HGLAVRKVKFSPHHAS  248 (311)
T ss_pred             eecccccCCcEEEecC---------------CCceEEEEehhhc------c-ccceeecC----CceEEEEEecCcchhh
Confidence            2334444444444443               1223333444331      1 11111111    1225778999999888


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      |.+|.-.+-++.+||..
T Consensus       249 lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPE  265 (311)
T ss_pred             HhhhccccceEEecccc
Confidence            88777789999999875

>smart00320 WD40 WD40 repeats

Probab=83.03  E-value=3.1  Score=23.10  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      ....+.++++++++++++. ++.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~-d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASD-DGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecC-CCeEEEcC
Confidence            4678899999988876654 78999885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1538|consensus

Probab=82.56  E-value=2.5  Score=43.14  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ..++++|-|||..|.++.  ++.+.+||+.+.
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG   43 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG   43 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCc
Confidence            467899999999999886  568999999763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=82.55  E-value=12  Score=37.10  Aligned_cols=26  Identities=27%  Similarity=0.568  Sum_probs=21.4

Q ss_pred             EEEccCCCEEEEEeCCC--CcEEEEEec
Q psy11412        185 ILISLDDRYLYTSNWMH--GDIRQYDIR  210 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~--~~V~v~Dv~  210 (290)
                      +.|||.+|+..++..++  ++|.+||..
T Consensus       321 ~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         321 IFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccCcccEEEEecCCccccceEEeccC
Confidence            77999999998887764  788899864

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=82.22  E-value=37  Score=30.42  Aligned_cols=19  Identities=26%  Similarity=0.371  Sum_probs=16.5

Q ss_pred             CceEEEEccCCCEEEEEcC
Q psy11412        111 SSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~ne  129 (290)
                      ....|.+||||.++.++.+
T Consensus       113 ~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             ceEEEEECCCCcEEEEEEe
Confidence            5678999999999999875

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.66  E-value=4  Score=25.16  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=17.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CeEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMH--GDIRQY   60 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~--g~V~v~   60 (290)
                      .-...++||||++||-+....  |.-.+|
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            456789999998887664434  554444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2314|consensus

Probab=81.38  E-value=21  Score=35.90  Aligned_cols=110  Identities=16%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             CCCceEEEEEcCCCCEEEEE--eCCCCeEEEEEcC-CCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         31 VPAMVTDILISLDDRYLYTS--NWMHGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva--~~~~g~V~v~dv~-d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      +...+-+.+.-|-|...++-  +....+|+.|-+. ....++++..+.-                               
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-------------------------------  492 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-------------------------------  492 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------------------------------
Confidence            34456677888988776554  3345678888886 3334444332100                               


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                        ..-.++-+||.|+++.+++-.+..-++.+++             .. .+..+.+           ..++......+-.
T Consensus       493 --~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D-------------~~-~a~~k~~-----------~~~eh~~at~veW  545 (698)
T KOG2314|consen  493 --KFANTVFWSPKGRFVVVAALVSRRGDLEFYD-------------TD-YADLKDT-----------ASPEHFAATEVEW  545 (698)
T ss_pred             --cccceEEEcCCCcEEEEEEecccccceEEEe-------------cc-hhhhhhc-----------cCccccccccceE
Confidence              3456799999999999987533222233322             11 0000011           1223345667889


Q ss_pred             ccCCCEEEEEe
Q psy11412        188 SLDDRYLYTSN  198 (290)
Q Consensus       188 SpDGr~Lyvs~  198 (290)
                      .|-||++.++.
T Consensus       546 DPtGRYvvT~s  556 (698)
T KOG2314|consen  546 DPTGRYVVTSS  556 (698)
T ss_pred             CCCCCEEEEee
Confidence            99999976544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=81.23  E-value=38  Score=30.98  Aligned_cols=32  Identities=19%  Similarity=0.070  Sum_probs=21.2

Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      ..||+.||.|+ |++.|..+|-.   ..+.+.++.+
T Consensus       136 t~dg~~Li~SD-GS~~L~~~dP~---~f~~~~~i~V  167 (264)
T PF05096_consen  136 TSDGKRLIMSD-GSSRLYFLDPE---TFKEVRTIQV  167 (264)
T ss_dssp             EECSSCEEEE--SSSEEEEE-TT---T-SEEEEEE-
T ss_pred             EcCCCEEEEEC-CccceEEECCc---ccceEEEEEE
Confidence            37999999999 89999988643   4555555544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=80.97  E-value=9.6  Score=34.45  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      =+.+++++-|.|.+|++..+.-+++.+.|+-  ..|.....-.+.++.  + .+  |   .      +...|-++++.-+
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~--~tG~~snr~~i~dlr--k-~~--~---~------e~~~PDGm~ID~e  222 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC--PTGDLSNRKVIFDLR--K-SQ--P---F------ESLEPDGMTIDTE  222 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCC--CcccccCcceeEEec--c-CC--C---c------CCCCCCcceEccC
Confidence            4677999999999999999877777665533  112111111112210  0 00  0   0      1123445778777


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI  221 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i  221 (290)
                      | +||++.+..++|.-+|..   +.+++.++
T Consensus       223 G-~L~Va~~ng~~V~~~dp~---tGK~L~ei  249 (310)
T KOG4499|consen  223 G-NLYVATFNGGTVQKVDPT---TGKILLEI  249 (310)
T ss_pred             C-cEEEEEecCcEEEEECCC---CCcEEEEE
Confidence            7 579999888888777654   45665554

>KOG0290|consensus

Probab=80.96  E-value=3.1  Score=38.47  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=55.8

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee----------Cce-------e-cCCCceEEecCCCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL----------GGK-------I-QSDSGVTVIDDPEL  241 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~----------Gg~-------~-~~~~~v~~~~~~~~  241 (290)
                      ..+++|+|+.+|+-+++|.-.+|+|++||+.+.++-+.+-+-+.          ..+       + .+...|.++|..- 
T Consensus       197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~-  275 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV-  275 (364)
T ss_pred             cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC-
Confidence            46899999999999999998899999999977665444322111          000       0 3445566666421 


Q ss_pred             CCCCCcceeecccccCCcceEEEccCCC-EEEEEc
Q psy11412        242 DKQPDPVIIKGRRFTGSSQMFQLSLDGK-RIYVSS  275 (290)
Q Consensus       242 ~~~~~~~~~~~~~~~~~P~~~a~sPDG~-~L~Van  275 (290)
                      +..|.. .+.+.  ++..+++++.|..+ .|..|.
T Consensus       276 P~tpva-~L~~H--~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  276 PCTPVA-RLRNH--QASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             CCccee-hhhcC--cccccceEecCCCCceeeecC
Confidence            223321 12222  23478899988554 444443

>KOG4659|consensus

Probab=80.92  E-value=39  Score=37.53  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      +++-+.+|+||=..+||+++-.  +=.||.+.+
T Consensus       406 ~sh~Yy~AvsPvdgtlyvSdp~--s~qv~rv~s  436 (1899)
T KOG4659|consen  406 TSHSYYIAVSPVDGTLYVSDPL--SKQVWRVSS  436 (1899)
T ss_pred             ccceeEEEecCcCceEEecCCC--cceEEEecc
Confidence            4577899999999999999864  445677765

>PRK10115 protease 2; Provisional

Probab=80.80  E-value=75  Score=33.00  Aligned_cols=29  Identities=14%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCe----EEEEEcC
Q psy11412         35 VTDILISLDDRYLYTSNWMHGD----IRQYDIR   63 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~----V~v~dv~   63 (290)
                      ...+.+||||++|+.+-..+|.    |.+.|+.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~  161 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE  161 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECC
Confidence            4467899999998877443333    5666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2ece_A	462	X-Ray Structure Of Hypothetical Selenium-Binding Pr		9e-24
2ece_A	462	X-Ray Structure Of Hypothetical Selenium-Binding Pr		2e-18

>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein From Sulfolobus Tokodaii, St0059 Length = 462

Iteration: 1
 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 24/149 (16%)
Query: 1   FYRQSDGTYKADKVIDIPAKQVQG-----YPGGDKVPAMVTDILISLDDRYLYTSNWMHG 55
           FY   DG + A+KVI+IPA+ ++G           VP +VTDI ISLDD++LY S W  G
Sbjct: 286 FYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343
Query: 56  DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 115
           ++RQYDI +   PVL G++ LGG           D P            G + TG+ QM 
Sbjct: 344 EVRQYDISNPFKPVLTGKVKLGGIFHR------ADHP-----------AGHKLTGAPQML 386
Query: 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVK 144
           ++S DG+R+YV++SL+S WD + YP+ +K
Sbjct: 387 EISRDGRRVYVTNSLYSTWDNQFYPEGLK 415

>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein From Sulfolobus Tokodaii, St0059 Length = 462

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 17/108 (15%)
Query: 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 240
           +VTDI ISLDD++LY S W  G++RQYDI +   PVL G++ LGG           D P 
Sbjct: 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR------ADHP- 374
Query: 241 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 288
                      G + TG+ QM ++S DG+R+YV++SL+S WD + YP+
Sbjct: 375 ----------AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE 412

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
2ece_A	462	462AA long hypothetical selenium-binding protein;	4e-36
2ece_A	462	462AA long hypothetical selenium-binding protein;	2e-28
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	9e-05
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	1e-04

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score =  133 bits (336), Expect = 4e-36
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 22/149 (14%)

Query: 1   FYRQSDGTYKADKVIDIPAKQVQG-----YPGGDKVPAMVTDILISLDDRYLYTSNWMHG 55
            +   DG + A+KVI+IPA+ ++G           VP +VTDI ISLDD++LY S W  G
Sbjct: 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343

Query: 56  DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 115
           ++RQYDI +   PVL G++ LGG                 +   P    G + TG+ QM 
Sbjct: 344 EVRQYDISNPFKPVLTGKVKLGGIFH--------------RADHP---AGHKLTGAPQML 386

Query: 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVK 144
           ++S DG+R+YV++SL+S WD + YP+ +K
Sbjct: 387 EISRDGRRVYVTNSLYSTWDNQFYPEGLK 415

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score =  112 bits (281), Expect = 2e-28
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 17/111 (15%)

Query: 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 239
            +VTDI ISLDD++LY S W  G++RQYDI +   PVL G++ LGG              
Sbjct: 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH----------- 369

Query: 240 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV 290
              +   P    G + TG+ QM ++S DG+R+YV++SL+S WD + YP+ +
Sbjct: 370 ---RADHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGL 414

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 88/289 (30%)

Query: 14  VIDI---PAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL 70
            I+    P K V    G     A V    I+ DD++  T   ++                
Sbjct: 66  QIETQLEPPKVVAIQEGQS-SMADVD---ITPDDQFAVTVTGLNHPFNMQSY-SFLKNKF 120

Query: 71  VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 130
           +  I +        G+ +                             S +G  + +    
Sbjct: 121 ISTIPIPYDA---VGIAI-----------------------------SPNGNGLILIDR- 147

Query: 131 FSPWDKEIYPDLVKTDAAFGSDEIMEF-IQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189
                               ++ +  F I  +      L   G       +   +I  + 
Sbjct: 148 ------------------SSANTVRRFKIDADG----VLFDTGQEFISGGTRPFNITFTP 185

Query: 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-----------GK-----IQSDSGV 233
           D  + + +N +   I   + ++  +  L+  +              G       +S   V
Sbjct: 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDV 245

Query: 234 TVIDDPELDKQPDPVIIKGRRFT------GSSQMFQLSLDGKRIYVSSS 276
              +          V   G            +    L+    ++++S++
Sbjct: 246 FNFNQL--SGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 38/283 (13%), Positives = 73/283 (25%), Gaps = 86/283 (30%)

Query: 14  VIDIPAKQVQG--YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV 71
           V+DI + Q      P   K      + +   +   L+ S      +    + D       
Sbjct: 148 VLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV---HVFDLKTLAYK 204

Query: 72  GQIFLGGKI-----------------QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-Q 113
             + L GK                       ++VID           +   +       +
Sbjct: 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID-------RKTKLEIRKTDKIGLPR 257

Query: 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGS 173
              LS DGK +Y++    +   +     L         +++++ I               
Sbjct: 258 GLLLSKDGKELYIAQF-SASNQESGGGRLGIYSMD--KEKLIDTI--------------- 299

Query: 174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 233
                      I+    +  +Y S+     I  Y   D     +   I +          
Sbjct: 300 ---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVY---DLKEKKVQKSIPVFD-------- 345

Query: 234 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276
                     +P+ + +              S DGK +YVS  
Sbjct: 346 ----------KPNTIAL--------------SPDGKYLYVSCR 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.97
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.76
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.74
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.67
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.65
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.64
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.62
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.59
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.57
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.51
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.5
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.44
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.4
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.39
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.39
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.39
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.37
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.36
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.35
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.34
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.32
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.32
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.31
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.31
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.29
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.28
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.28
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.28
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.26
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.26
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.26
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.25
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.24
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.23
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.22
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.22
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.22
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.22
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.22
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.22
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.2
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.2
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.2
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.19
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.19
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.18
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.18
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.18
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.18
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.18
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.17
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.17
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.16
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.16
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.16
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.15
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.15
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.15
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.14
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.14
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.14
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.13
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.12
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.12
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.1
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.1
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.09
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.09
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.09
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.09
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.08
2pm7_B	297	Protein transport protein SEC13, protein transport	99.08
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.08
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.08
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.08
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.07
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.05
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.05
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.04
2pm7_B	297	Protein transport protein SEC13, protein transport	99.03
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.03
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.03
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.03
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.02
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.02
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.02
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.01
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.0
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.99
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.99
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.98
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.95
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.9
3jro_A	753	Fusion protein of protein transport protein SEC13	98.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.89
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.89
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.88
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.86
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.84
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.81
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.81
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.76
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.76
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.75
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.74
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.74
3jro_A	753	Fusion protein of protein transport protein SEC13	98.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.73
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.71
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.71
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.71
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.7
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.63
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.63
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.62
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.61
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.57
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.57
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.56
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.56
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.52
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.51
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.51
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.48
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.47
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	98.41
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.4
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.38
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.37
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	98.34
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.33
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.31
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.22
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.22
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.0
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.0
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.95
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.84
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.83
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.8
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.78
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.71
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.6
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.55
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.51
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.28
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.97
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.92
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.88
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.79
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.5
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.65
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.17
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.17
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	94.52
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	93.65
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	92.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.08
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	90.2
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.57
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	88.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	86.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	86.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	86.06
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.76
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	82.77
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	82.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	81.95

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.97  E-value=4e-31  Score=253.53  Aligned_cols=217  Identities=29%  Similarity=0.496  Sum_probs=159.1

Q ss_pred             EEEEecCCCccCCCCCCCCCC----CceEEEEEcCCCCEEEEEeCC------------------CCeEEEEEcCCCCCce
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVP----AMVTDILISLDDRYLYTSNWM------------------HGDIRQYDIRDTAHPV   69 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~----~~p~~va~SpDGr~Lyva~~~------------------~g~V~v~dv~d~~~~~   69 (290)
                      --++|..+.+++...   +++    ..++.+-++||++++|+++++                  +++|.+||+..   .+
T Consensus       166 v~vlD~~T~~v~~~~---~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k  239 (462)
T 2ece_A          166 ILMLDHYSFEPLGKW---EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RK  239 (462)
T ss_dssp             EEEECTTTCCEEEEC---CSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TE
T ss_pred             EEEEECCCCeEEEEE---ccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---Cc
Confidence            456777777888776   443    245568889999999999864                  79999999965   36


Q ss_pred             eeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE--ccCCCEEEEEcC-----CCCCcceeecccc
Q psy11412         70 LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL--SLDGKRIYVSSS-----LFSPWDKEIYPDL  142 (290)
Q Consensus        70 ~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf--sPdG~~lYv~ne-----l~~~~d~~~~~~~  142 (290)
                      +++++.+|.                             .|.+|+||.|  ||+|+++||++|     +.+++.++.+.  
T Consensus       240 ~~~tI~vg~-----------------------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--  288 (462)
T 2ece_A          240 RIHSLTLGE-----------------------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--  288 (462)
T ss_dssp             EEEEEESCT-----------------------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--
T ss_pred             EeeEEecCC-----------------------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--
Confidence            666666641                             1368999988  999999999999     98888776663  


Q ss_pred             cCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE
Q psy11412        143 VKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI  221 (290)
Q Consensus       143 ~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i  221 (290)
                        ++ .+...+++++........+|.... +  .. .++.+++|++|||||+||+|||++|+|++|||++++++++++++
T Consensus       289 --~g-~~~~~~vIdi~~~~v~~~lp~~~~-~--f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I  362 (462)
T 2ece_A          289 --DG-KWNAEKVIEIPAEPLEGNLPEILK-P--FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV  362 (462)
T ss_dssp             --TT-EEEEEEEEEECCEECCSSCCGGGG-G--GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             --CC-ceeEEEEEeCCCcccccccccccc-c--cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence              22 344444444322221111111000 0  00 02467899999999999999999999999999888889999999


Q ss_pred             eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCcccCCC
Q psy11412        222 FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD  288 (290)
Q Consensus       222 ~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~~~~  288 (290)
                      ++||.+.+              .+++   +|.++.++|++|+|||||++|||||++|++||+||||+
T Consensus       363 ~tGG~~~~--------------~~~~---~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~  412 (462)
T 2ece_A          363 KLGGIFHR--------------ADHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE  412 (462)
T ss_dssp             ECBTTTTC--------------BCCT---TSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred             EeCCeecc--------------cccc---ccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence            99984310              1111   44555568999999999999999999999999999997

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=3.2e-19  Score=163.44  Aligned_cols=159  Identities=18%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC------ceee---eEEeecccccCCCceEEecCCCCcCCCCccee
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH------PVLV---GQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  103 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~------~~~~---~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~  103 (290)
                      .++++++|||||++||+++.+++.|.+|++.....      ....   .....                           
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---------------------------  207 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV---------------------------  207 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---------------------------
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec---------------------------
Confidence            36789999999999999999999999999975331      2111   11111                           


Q ss_pred             eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCce
Q psy11412        104 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMV  182 (290)
Q Consensus       104 ~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~  182 (290)
                         ..+.+|++++|||||++||++++..+.+.++...    .+ .+.           .+..++.       .+. ...+
T Consensus       208 ---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~----~g-~~~-----------~~~~~~~-------~~~~~~~~  261 (361)
T 3scy_A          208 ---APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA----DG-MLD-----------EIQTVAA-------DTVNAQGS  261 (361)
T ss_dssp             ---CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE----TT-EEE-----------EEEEEES-------CSSCCCCE
T ss_pred             ---CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec----CC-ceE-----------EeEEEec-------CCCCCCCc
Confidence               1246899999999999999998744433222111    11 111           0111010       111 2357


Q ss_pred             eEEEEccCCCEEEEEeCC-CCcEEEEEec-CCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        183 TDILISLDDRYLYTSNWM-HGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~-~~~V~v~Dv~-d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      .+|+|||||++||+++++ +++|.+|++. ..+..+.+..++.|.                                .|+
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~--------------------------------~~~  309 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGI--------------------------------HPR  309 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSS--------------------------------CCC
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCC--------------------------------CCc
Confidence            899999999999999998 8999999995 234455666666633                                799


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .++|||||++||++|+
T Consensus       310 ~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          310 NFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEECTTSCEEEEEET
T ss_pred             eEEECCCCCEEEEEEC
Confidence            9999999999999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=2.8e-19  Score=162.68  Aligned_cols=164  Identities=19%  Similarity=0.254  Sum_probs=112.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .++.++++|||+ ||+++.+++.|.+|++...+....+..+..                              ..+.+|+
T Consensus       142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~------------------------------~~g~~p~  190 (347)
T 3hfq_A          142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM------------------------------EAGFGPR  190 (347)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC------------------------------CTTCCEE
T ss_pred             CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc------------------------------CCCCCCc
Confidence            688999999999 999999899999999974333333322111                              1236899


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++|+|||++||++++..+.+.++.+..   ..+.+..+.        .+...+.    +  ......+.+++|||||++
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~---~~g~~~~~~--------~~~~~~~----~--~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDT---QTGAFTQLG--------IVKTIPA----D--YTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEET---TTTEEEEEE--------EEESSCT----T--CCSCCEEEEEEECTTSCE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecC---CCCceEEee--------eeeecCC----C--CCCCCcceeEEECCCCCE
Confidence            9999999999999887544433322210   011111111        1111111    0  011246888999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      ||++++.+++|.+||+...+..+.+..++.++.                               .|+.++|||||++||+
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-------------------------------~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-------------------------------FPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-------------------------------CCCEEEECTTSSEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-------------------------------CcCeEEECCCCCEEEE
Confidence            999998899999999964344566776666441                               6999999999999999


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      ++.
T Consensus       303 ~~~  305 (347)
T 3hfq_A          303 VNQ  305 (347)
T ss_dssp             EET
T ss_pred             EEc
Confidence            986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=2.4e-18  Score=159.17  Aligned_cols=174  Identities=10%  Similarity=0.106  Sum_probs=109.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|++++|||||++||+++.++++|.+|++...+....+..+...                             ..+.+
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----------------------------~~g~~  194 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-----------------------------DPGDH  194 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-----------------------------STTCC
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-----------------------------CCCCC
Confidence            3579999999999999999988899999999622333333322110                             01368


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcc--ccCCCCceeEEE-Ec
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSW--KYPARSMVTDIL-IS  188 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~--~~~~~~~~~~i~-~S  188 (290)
                      |++++|||||++||++++..+.+.++.+..  +.+ .+.. .      .+.+..++.. ..+.  .++....+.+++ ||
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~--~~g-~~~~-~------~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~s  263 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP--ATH-MPVY-T------HHSFPLIPPG-IPDRDPETGKGLYRADVCALT  263 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECT--TTC-CEEE-E------EEEEESSCTT-CCCBCTTTSSBSEEEEEEEEC
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeC--CCC-cEEE-c------cceEEcCCCC-cCCcccccccccccccEEEEC
Confidence            999999999999999998655544432211  112 1110 0      0011111111 0000  000001578899 99


Q ss_pred             cCCCEEEEEeCCCC-----cEEEEEecCCCCceEee-EEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412        189 LDDRYLYTSNWMHG-----DIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  262 (290)
Q Consensus       189 pDGr~Lyvs~r~~~-----~V~v~Dv~d~~~~~~v~-~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  262 (290)
                      |||++||+++++++     +|.+|++...+....+. .++..+                               ..|+.+
T Consensus       264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------------------------------~~~~~~  312 (365)
T 1jof_A          264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------------------------------SGGHSN  312 (365)
T ss_dssp             TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------------------------------CCTTCC
T ss_pred             CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------------------------------CCcccc
Confidence            99999999998776     89999996333333222 132212                               268899


Q ss_pred             EEcc---CCCEEEEEcC
Q psy11412        263 QLSL---DGKRIYVSSS  276 (290)
Q Consensus       263 a~sP---DG~~L~Van~  276 (290)
                      +|||   ||++||++|+
T Consensus       313 a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          313 AVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             CEEECTTCTTEEEEECS
T ss_pred             eecCCCcCCCEEEEEEc
Confidence            9999   8999999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=6.1e-18  Score=166.23  Aligned_cols=184  Identities=13%  Similarity=0.053  Sum_probs=125.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|....++...+   +++..++.++|||||++||+++.+ ++|.+||+.. ...+.+.++..|             
T Consensus       160 ~V~v~D~~t~~~~~~i---~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~-~t~~~~~~i~~g-------------  221 (543)
T 1nir_A          160 QIALVDGDSKKIVKVI---DTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWA-KEPTKVAEIKIG-------------  221 (543)
T ss_dssp             EEEEEETTTCCEEEEE---ECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTS-SSCEEEEEEECC-------------
T ss_pred             eEEEEECCCceEEEEE---ecCcccceEEECCCCCEEEEECCC-CeEEEEECcC-CCCcEEEEEecC-------------
Confidence            3567888888777655   555568999999999999999985 9999999931 235555555433             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEcc----CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSL----DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsP----dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                                         .+|++++|||    ||++||++|+..+++.+               +|..+   .+.+..+
T Consensus       222 -------------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v---------------~D~~t---~~~~~~i  264 (543)
T 1nir_A          222 -------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAI---------------MDGET---LEPKQIV  264 (543)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEE---------------EETTT---CCEEEEE
T ss_pred             -------------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEE---------------Eeccc---cccceee
Confidence                               6899999999    99999999974443322               22211   1111111


Q ss_pred             CccccCcc--ccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCC
Q psy11412        167 PLSSLGSW--KYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ  244 (290)
Q Consensus       167 p~~~~~~~--~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~  244 (290)
                      +.......  .....+.+.+|++||||+++|+++.++++|.+||+.+.... .+.+++.+.                   
T Consensus       265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~~~~i~~~~-------------------  324 (543)
T 1nir_A          265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSIGAAP-------------------  324 (543)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-EEEEEECCS-------------------
T ss_pred             cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-eeEEeccCc-------------------
Confidence            11000000  00011357889999999999999999999999999754322 234454433                   


Q ss_pred             CCcceeecccccCCcceEEEccCCCEEEEEcC---CCCCCC
Q psy11412        245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS---LFSPWD  282 (290)
Q Consensus       245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~---~~~~~~  282 (290)
                                   .|++++|+|||++|||+|+   ....||
T Consensus       325 -------------~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          325 -------------FLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             -------------SCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             -------------CccCceECCCCCEEEEEecCCCeEEEEE
Confidence                         7999999999999999975   445555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.76  E-value=1.4e-18  Score=166.60  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=74.3

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      ..--|||..+.++...+   +++..| ++++||||++|||+|.         .++.|.+||..+   .+++..+.+++..
T Consensus        99 ~~VsVID~~t~~vv~~I---~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMT---DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---FLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTTEEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC
T ss_pred             CeEEEEECCCCEEEEEE---ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---CcEEEEEECCCcc
Confidence            67789999999999877   888899 9999999999999985         367899998754   5667777664210


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC-CCCcce
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL-FSPWDK  136 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel-~~~~d~  136 (290)
                                              ....+..|++++|||||++|||+|+. .+.+.+
T Consensus       172 ------------------------r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsV  204 (426)
T 3c75_H          172 ------------------------RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGV  204 (426)
T ss_dssp             ------------------------CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEE
T ss_pred             ------------------------ccccCCCcceEEEcCCCCEEEEEecCCCCeEEE
Confidence                                    00013579999999999999999974 444444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.75  E-value=7.3e-17  Score=145.01  Aligned_cols=173  Identities=11%  Similarity=0.121  Sum_probs=113.8

Q ss_pred             EEEEEecCCCcc-CCCCCCCCCCCceEE-EEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412         11 ADKVIDIPAKQV-QGYPGGDKVPAMVTD-ILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV   86 (290)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~v~~~p~~-va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~   86 (290)
                      .-.++|+...++ ....   .....|.+ ++++|||++||+++..++  .|.+||+..   .+.+..+..          
T Consensus        63 ~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~~----------  126 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAI---QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIPI----------  126 (331)
T ss_dssp             EEEEEECSSSSCEEEEE---EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEEC----------
T ss_pred             eEEEEECCCCceeEEec---ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEEC----------
Confidence            345677776665 3332   34567888 999999999995544334  999999864   333433322          


Q ss_pred             EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCC-cceeecccccCCCceeecceeeeeeecccccc
Q psy11412         87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP-WDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~-~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                            +..|++++|+|||++||+++..... +.++....   ++ .+     .+..    .. 
T Consensus       127 ----------------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~---~g-~~-----~~~~----~~-  170 (331)
T 3u4y_A          127 ----------------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA---DG-VL-----FDTG----QE-  170 (331)
T ss_dssp             ----------------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT---TC-CE-----EEEE----EE-
T ss_pred             ----------------------CCCccceEECCCCCEEEEEecCCCceEEEEEECC---CC-cE-----eecC----Cc-
Confidence                                  2578999999999999998763222 22211110   11 11     1100    00 


Q ss_pred             cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC
Q psy11412        166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP  245 (290)
Q Consensus       166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~  245 (290)
                               .++.+..+.+++|||||++||+++..++.|.+||+.+......+..++.+.                    
T Consensus       171 ---------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--------------------  221 (331)
T 3u4y_A          171 ---------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN--------------------  221 (331)
T ss_dssp             ---------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS--------------------
T ss_pred             ---------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC--------------------
Confidence                     011234578899999999999999889999999986422222255555443                    


Q ss_pred             CcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        246 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       246 ~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                  .|..++|+|||++||+++.
T Consensus       222 ------------~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          222 ------------LPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             ------------CCCCEEECTTSSEEEEECS
T ss_pred             ------------CCceEEECCCCCEEEEEEc
Confidence                        6899999999999999976

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.74  E-value=1.1e-16  Score=150.42  Aligned_cols=95  Identities=8%  Similarity=-0.074  Sum_probs=68.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ   81 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~   81 (290)
                      .--|||..+.++...+   +++..| ++++||||++||++|.         .++.|.+||...   .+.++.+.+++.. 
T Consensus        48 ~v~v~D~~t~~~~~~i---~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---~~~~~~i~~~~~~-  119 (373)
T 2mad_H           48 QQWVLDAGSGSILGHV---NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPDAP-  119 (373)
T ss_pred             EEEEEECCCCeEEEEe---cCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---CcEEEEEECCCcc-
Confidence            4478888888887655   677778 9999999999999984         367899999753   5566666554100 


Q ss_pred             CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC-CCCcce
Q psy11412         82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL-FSPWDK  136 (290)
Q Consensus        82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel-~~~~d~  136 (290)
                                             ....+..|++++||||||+||++|+. .+.+.+
T Consensus       120 -----------------------~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~v  152 (373)
T 2mad_H          120 -----------------------RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             -----------------------ccccCCCccceEECCCCCEEEEEecCCCCeEEE
Confidence                                   00013579999999999999999864 343433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.74  E-value=5.2e-18  Score=159.70  Aligned_cols=89  Identities=6%  Similarity=-0.138  Sum_probs=70.7

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ   81 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~   81 (290)
                      .--|||..+.++...+   +++..| ++++||||++|||+|.         .+++|.+||...   .+++.++.+++.. 
T Consensus        47 ~vsvID~~t~~v~~~i---~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I~v~~~~-  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHS---LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIELPDAP-  118 (368)
T ss_dssp             EEEEEETTTTEEEEEE---EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEEETTSC-
T ss_pred             eEEEEECCCCeEEEEE---eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEEECCCcc-
Confidence            5569999999999887   888899 9999999999999984         368999999754   5667777665210 


Q ss_pred             CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412         82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  130 (290)
Q Consensus        82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel  130 (290)
                                             ....+..|++++||||||+|||+|+.
T Consensus       119 -----------------------~~~~g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H          119 -----------------------RFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             -----------------------SCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             -----------------------ccccCCCcceEEEcCCCCEEEEEccC
Confidence                                   00013579999999999999999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=7.4e-17  Score=145.01  Aligned_cols=180  Identities=14%  Similarity=0.165  Sum_probs=118.4

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe-EEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~-V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      .-.++|+...++....   +....|++++++|||++||+++..++. |.+|++...+..........             
T Consensus       109 ~i~v~d~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-------------  172 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-------------  172 (331)
T ss_dssp             EEEEEETTTTEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-------------
T ss_pred             cEEEEECCCCCeEEEE---ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-------------
Confidence            5667888877766554   567789999999999999999887788 99999975332211110000             


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc---cccc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE---MRSM  166 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~---i~~~  166 (290)
                                       ..+.+|++++|+|||++||+++...+               .+.+++..+   .+.   +.. 
T Consensus       173 -----------------~~~~~~~~~~~spdg~~l~v~~~~~~---------------~v~v~d~~~---~~~~~~~~~-  216 (331)
T 3u4y_A          173 -----------------SGGTRPFNITFTPDGNFAFVANLIGN---------------SIGILETQN---PENITLLNA-  216 (331)
T ss_dssp             -----------------CSSSSEEEEEECTTSSEEEEEETTTT---------------EEEEEECSS---TTSCEEEEE-
T ss_pred             -----------------cCCCCccceEECCCCCEEEEEeCCCC---------------eEEEEECCC---Ccccceeee-
Confidence                             12367999999999999999886322               233333221   111   111 


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                               ++.+..+.+++|||||++||+++++++.|.+||+.+ +..+.+..+..+-.+                .+.
T Consensus       217 ---------~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~----------------~~~  270 (331)
T 3u4y_A          217 ---------VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLI----------------DPR  270 (331)
T ss_dssp             ---------EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCC----------------CCG
T ss_pred             ---------ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC-Cceeeeccccccccc----------------CCC
Confidence                     112345678999999999999998889999999853 233335544433100                000


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                            .  ......++|+|||++||+++.
T Consensus       271 ------~--~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          271 ------P--LFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             ------G--GTTCCCEEECTTSSEEEEEET
T ss_pred             ------C--cccccceEECCCCCEEEEecC
Confidence                  0  012355899999999999976

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=3e-17  Score=152.77  Aligned_cols=87  Identities=18%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      -.++|..+.++...+   +++..| +++|||||++||+++.         .+++|.+||...   .+.++++.++..   
T Consensus        33 v~v~D~~t~~~~~~i---~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---~~~~~~i~~~~~---  102 (361)
T 2oiz_A           33 VHVYDYTNGKFLGMV---PTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK---LTFEKEISLPPK---  102 (361)
T ss_dssp             EEEEETTTCCEEEEE---ECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT---CCEEEEEEECTT---
T ss_pred             EEEEECCCCeEEEEe---cCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC---CcEEEEEEcCcc---
Confidence            457787777776654   667788 9999999999999984         256799999753   556666655310   


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  130 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel  130 (290)
                                            ....|..|++++|||||++||++|+.
T Consensus       103 ----------------------~~~~g~~p~~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A          103 ----------------------RVQGLNYDGLFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             ----------------------BCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred             ----------------------ccccCCCcceEEECCCCCEEEEECCC
Confidence                                  00113679999999999999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.4e-16  Score=157.74  Aligned_cols=177  Identities=15%  Similarity=0.093  Sum_probs=126.2

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.|||..+.++...+   +++..|++++|||||++||+++. +|.|.+||+.. ...+.+.++.+|             
T Consensus       178 ~V~viD~~t~~v~~~i---~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~-~t~~~v~~i~~G-------------  239 (567)
T 1qks_A          178 QIALIDGSTYEIKTVL---DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWM-KEPTTVAEIKIG-------------  239 (567)
T ss_dssp             EEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCCEEEEEECC-------------
T ss_pred             eEEEEECCCCeEEEEE---eCCCCccceEECCCCCEEEEEcC-CCeEEEEECCC-CCCcEeEEEecC-------------
Confidence            4578999988888776   67888999999999999999985 78999999852 234556655554             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEc----cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLS----LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafs----PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                                         .+|++++||    |||++|||+|++.+.+.++               |..+   .+.+..+
T Consensus       240 -------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi---------------D~~t---~~~~~~i  282 (567)
T 1qks_A          240 -------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM---------------DGET---LEPKKIQ  282 (567)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE---------------ETTT---CCEEEEE
T ss_pred             -------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEE---------------ECCC---CcEEEEE
Confidence                               689999999    7999999999865544332               2111   1122222


Q ss_pred             Cccc--cCccc-cCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCC
Q psy11412        167 PLSS--LGSWK-YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK  243 (290)
Q Consensus       167 p~~~--~~~~~-~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~  243 (290)
                      +...  +.+.. .+ ...+++|.+|+++..++++....+.|.++|..+... ..+..+..+.                  
T Consensus       283 ~~~~~~~~~~~~~p-~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-~~v~~i~~~~------------------  342 (567)
T 1qks_A          283 STRGMTYDEQEYHP-EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAER------------------  342 (567)
T ss_dssp             ECCEECTTTCCEES-CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEEECCS------------------
T ss_pred             eccccccccccccC-CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-ceeeeeeccc------------------
Confidence            2110  00000 01 125678999999999999998899999999876432 2344454433                  


Q ss_pred             CCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        244 QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       244 ~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                    .|+++.|+|||++|||||.
T Consensus       343 --------------~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          343 --------------FLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             --------------SEEEEEECTTSCEEEEEEG
T ss_pred             --------------cccCceECCCCCEEEEEeC
Confidence                          7899999999999999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=4.2e-16  Score=139.49  Aligned_cols=166  Identities=17%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeee--EEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~--~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ...+..++++|||++||+++..++.|.+||+...+......  ....                              ..+
T Consensus       128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------------~~~  177 (343)
T 1ri6_A          128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------------------------VEG  177 (343)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------------------------STT
T ss_pred             CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc------------------------------CCC
Confidence            34688899999999999999778999999997533333222  1111                              123


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++++|+|||++||+++...+.+.++....   ..+.+....        .+..++..      ......+.+++|||
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~---~~g~~~~~~--------~~~~~~~~------~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKD---PHGNIECVQ--------TLDMMPEN------FSDTRWAADIHITP  240 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSC---TTSCCEEEE--------EEECSCTT------CCSCCCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecC---CCCcEEEEe--------eccccCcc------ccccCCccceEECC
Confidence            68999999999999999876433332221110   011111000        11111110      01123577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      ||++||++++.++.|.+||+.. .+..+.+..++.++                                .|..++|+|||
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~s~dg  288 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--------------------------------QPRGFNVDHSG  288 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--------------------------------SCCCEEECTTS
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--------------------------------ccceEEECCCC
Confidence            9999999998899999999963 23345566665544                                58899999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++||+++.
T Consensus       289 ~~l~~~~~  296 (343)
T 1ri6_A          289 KYLIAAGQ  296 (343)
T ss_dssp             SEEEEECT
T ss_pred             CEEEEecC
Confidence            99999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.72  E-value=6.8e-16  Score=140.24  Aligned_cols=174  Identities=14%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|++++|||||++||++++.+++|.+|++...+....+..+...+. .                +.     ....+..
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~----------------p~-----~~~~~~~  142 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH-G----------------PR-----PEQDGSH  142 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC-C----------------SS-----TTCSSCC
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC-C----------------CC-----ccccCCC
Confidence            457899999999999999998889999999965455555544332210 0                00     0001246


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ++.++|+|||+ +|+++...+               .+.++++..   ...+.....  .   ..+.+..+.+++|||||
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~---------------~v~~~~~~~---~g~~~~~~~--~---~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSD---------------KVYVYNVSD---AGQLSEQSV--L---TMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTT---------------EEEEEEECT---TSCEEEEEE--E---ECCTTCCEEEEEECTTS
T ss_pred             ceEEEECCCCc-EEEEeCCCC---------------EEEEEEECC---CCcEEEeee--E---EcCCCCCCceEEECCCC
Confidence            88899999999 888875322               222222210   000000000  0   11123467889999999


Q ss_pred             CEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ++||+++..++.|.+|++.. .+....+..+.....                         +......|+.++|||||++
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-------------------------~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-------------------------DYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-------------------------TCCSCCEEEEEEECTTSCE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-------------------------CCCCCCcceeEEECCCCCE
Confidence            99999998899999999963 222223333322110                         0000125899999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      |||++.
T Consensus       254 l~v~~~  259 (347)
T 3hfq_A          254 LYVSNR  259 (347)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.71  E-value=5e-17  Score=160.46  Aligned_cols=213  Identities=11%  Similarity=0.077  Sum_probs=136.2

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--------------CeEEEEEcCCCCCceeeeEEee
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--------------GDIRQYDIRDTAHPVLVGQIFL   76 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--------------g~V~v~dv~d~~~~~~~~~i~~   76 (290)
                      .--+||..+.+|...+   +|++.|.++++||||+++|++++.+              +.|.++|+....  +   .+..
T Consensus       176 ~vtvID~~t~~v~~qI---~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--~---~v~~  247 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQV---LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--K---AIAA  247 (595)
T ss_dssp             EEEEEETTTTEEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH--H---HHHH
T ss_pred             eEEEEECCCCeEEEEE---EeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee--E---eccC
Confidence            4568899999988877   8888999999999999999999987              457777753210  0   0111


Q ss_pred             cccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeeccccc--CCCceeeccee
Q psy11412         77 GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV--KTDAAFGSDEI  154 (290)
Q Consensus        77 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~--~~g~~~~~~~~  154 (290)
                      |. ....+.+.|++-.+.....   .....+.+..|+++.||||||++||++++.+.+.++.+....  -++ .+   +.
T Consensus       248 Gk-~~~i~~V~VID~~~~~~~~---~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l---~~  319 (595)
T 1fwx_A          248 GD-YQELNGVKVVDGRKEASSL---FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA---DP  319 (595)
T ss_dssp             TC-SEEETTEEEEECSGGGCCS---SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC---CG
T ss_pred             CC-eeEECcEEEEeCcccCCce---eEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc---Cc
Confidence            10 0001347777755421111   012234457899999999999999999977666554332100  000 00   00


Q ss_pred             eeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-------CCceEeeEEeeCcee
Q psy11412        155 MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-------AHPVLVGQIFLGGKI  227 (290)
Q Consensus       155 ~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-------~~~~~v~~i~~Gg~~  227 (290)
                      .    ...+.          ..+.+..|.+++|+||| ++|++++.+++|.+||+...       .....+.+++++-+.
T Consensus       320 ~----~~v~~----------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          320 R----SAVVA----------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             G----GGEEE----------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             c----cceEE----------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            0    00011          12234679999999999 99999999999999999541       113567888776410


Q ss_pred             cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCC
Q psy11412        228 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP  280 (290)
Q Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~  280 (290)
                                              |..  ....+++++||||+||++|.+.+.
T Consensus       385 ------------------------Gh~--~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          385 ------------------------GHL--KTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             ------------------------EEE--EETTTTSTTCCSSEEEEEESCCTT
T ss_pred             ------------------------ccc--eeccceEeCCCCCEEEEcCCCCcc
Confidence                                    000  013456789999999999996543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=4.9e-17  Score=151.35  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCC-cceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSP-WDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~-~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      .++++++|+|||+++||++++.+. .+.   .   .....+.++|.   ...+.+.+++          .+. +.+|+||
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~---~---~~~~~v~viD~---~t~~~v~~i~----------~~~-p~~ia~s  313 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKEGTH---K---FPAAEIWVMDT---KTKQRVARIP----------GRD-ALSMTID  313 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCTTCT---T---CCCSEEEEEET---TTTEEEEEEE----------CTT-CCEEEEE
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCcccc---c---CCCceEEEEEC---CCCcEEEEEe----------cCC-eeEEEEC
Confidence            456779999999999998762211 000   0   01123333333   2334444322          234 7899999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE-eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                      |||++||++|+  ++|++||... ..++.++++ .+|.                                +|+.|+|+||
T Consensus       314 pdg~~l~v~n~--~~v~v~D~~t-~~l~~~~~i~~~G~--------------------------------~P~~~~~~p~  358 (361)
T 2oiz_A          314 QQRNLMLTLDG--GNVNVYDISQ-PEPKLLRTIEGAAE--------------------------------ASLQVQFHPV  358 (361)
T ss_dssp             TTTTEEEEECS--SCEEEEECSS-SSCEEEEEETTSCS--------------------------------SEEEEEECCC
T ss_pred             CCCCEEEEeCC--CeEEEEECCC-CcceeeEEeccCCC--------------------------------CcEEEEecCC
Confidence            99999999995  8999999853 223788886 4444                                8999999999


Q ss_pred             CCE
Q psy11412        268 GKR  270 (290)
Q Consensus       268 G~~  270 (290)
                      |++
T Consensus       359 G~~  361 (361)
T 2oiz_A          359 GGT  361 (361)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            974

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.70  E-value=1.3e-16  Score=157.55  Aligned_cols=190  Identities=11%  Similarity=0.045  Sum_probs=127.8

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEE-c-CCCCEEEEEe-----------------CCCCeEEEEEcCCCCCceee
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILI-S-LDDRYLYTSN-----------------WMHGDIRQYDIRDTAHPVLV   71 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~-S-pDGr~Lyva~-----------------~~~g~V~v~dv~d~~~~~~~   71 (290)
                      +-.+||+...++...+ .++....|+++++ + ||+++||+++                 ...+.|.++|.+   ..+++
T Consensus       113 rVavIdl~t~~~~~ii-~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~---t~~v~  188 (595)
T 1fwx_A          113 RVARVRCDVMKCDAIL-EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD---KWEVA  188 (595)
T ss_dssp             EEEEEETTTTEEEEEE-ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT---TTEEE
T ss_pred             EEEEEECCCceEeeEE-eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC---CCeEE
Confidence            4578888888876644 3366778999998 6 9999999995                 445689999875   46777


Q ss_pred             eEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCc--------------cee
Q psy11412         72 GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPW--------------DKE  137 (290)
Q Consensus        72 ~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~--------------d~~  137 (290)
                      .++.++                                ..|+++++||||+++|++++..+..              .++
T Consensus       189 ~qI~Vg--------------------------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~  236 (595)
T 1fwx_A          189 WQVLVS--------------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  236 (595)
T ss_dssp             EEEEES--------------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             EEEEeC--------------------------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence            777775                                3689999999999999999744221              111


Q ss_pred             eccc---ccCCCce--eecceeeeeee--ccc-ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        138 IYPD---LVKTDAA--FGSDEIMEFIQ--RNE-MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       138 ~~~~---~~~~g~~--~~~~~~~~~~~--~~~-i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      ..+.   ..++|..  +.-+.++|...  .+. ++.          +|.+..|.+|.+|||||++|+++.++++|+++|+
T Consensus       237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~----------Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~  306 (595)
T 1fwx_A          237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY----------IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  306 (595)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE----------EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             eccceeEeccCCCeeEECcEEEEeCcccCCceeEEE----------EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence            1110   0111211  11133344322  111 222          3334567889999999999999999999999999


Q ss_pred             cCCC---------CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCC
Q psy11412        210 RDTA---------HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS  279 (290)
Q Consensus       210 ~d~~---------~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~  279 (290)
                      ....         ....+.++++|                                .+|++++|+||| ++|++|.+-|
T Consensus       307 ~~~~~~~~~~l~~~~~v~~~v~vG--------------------------------~gP~h~aF~~dG-~aY~t~~lds  352 (595)
T 1fwx_A          307 TRFDAVFYENADPRSAVVAEPELG--------------------------------LGPLHTAFDGRG-NAYTSLFLDS  352 (595)
T ss_dssp             GGHHHHHHSCCCGGGGEEECCBCC--------------------------------SCEEEEEECTTS-EEEEEETTTT
T ss_pred             cccccccccccCcccceEEEcCCC--------------------------------CCcceEEECCCC-eEEEEEecCC
Confidence            6310         00133444443                                389999999999 9999987543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=7.6e-16  Score=138.86  Aligned_cols=168  Identities=18%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             EEEEecCCCccCCCCCCCC-CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         12 DKVIDIPAKQVQGYPGGDK-VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      -.++|+...++....   + ....|.+++++|||++||+++. ++.|.+||..+   .+.+..+..+..           
T Consensus       166 i~~~d~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~---~~~~~~~~~~~~-----------  227 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAI---QNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTAD---NKILSRKKLLDD-----------  227 (353)
T ss_dssp             EEEEETTTTEEEEEE---CCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTT---TEEEEEEECCCS-----------
T ss_pred             EEEEcCCCCceEEEe---cCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCC---CeEEEEEEcCCC-----------
Confidence            556777777666554   3 3446899999999999999986 78999999865   344444433210           


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                      .....+..++|+|||+++|+++...+               .+..++..+   .+.+..++   
T Consensus       228 ----------------~~~~~~~~~~~s~dg~~l~~~~~~~~---------------~v~~~d~~~---~~~~~~~~---  270 (353)
T 3vgz_A          228 ----------------GKEHFFINISLDTARQRAFITDSKAA---------------EVLVVDTRN---GNILAKVA---  270 (353)
T ss_dssp             ----------------SSCCCEEEEEEETTTTEEEEEESSSS---------------EEEEEETTT---CCEEEEEE---
T ss_pred             ----------------CCCcccceEEECCCCCEEEEEeCCCC---------------EEEEEECCC---CcEEEEEE---
Confidence                            00135778999999999999876322               232233211   11111111   


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                             . ..+.+++|||||++||++++.++.|.+||+.+   .+.+..++.+.                         
T Consensus       271 -------~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~-------------------------  314 (353)
T 3vgz_A          271 -------A-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPT-------------------------  314 (353)
T ss_dssp             -------C-SSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCS-------------------------
T ss_pred             -------c-CCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCC-------------------------
Confidence                   1 12356999999999999998899999999853   56667666655                         


Q ss_pred             ecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                             .|..++|+|||++||+++..
T Consensus       315 -------~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          315 -------HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -------EEEEEEECTTSCEEEEEEEC
T ss_pred             -------CCCeEEEcCCCCEEEEEEcc
Confidence                   68999999999999999873

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.69  E-value=4.9e-16  Score=152.68  Aligned_cols=212  Identities=13%  Similarity=0.093  Sum_probs=134.2

Q ss_pred             eEEEEEec--CCCccCCCCCCCCCCCceEEEEEcC----CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCC
Q psy11412         10 KADKVIDI--PAKQVQGYPGGDKVPAMVTDILISL----DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD   83 (290)
Q Consensus        10 ~~~~~~~~--~~~~~~~~~~~~~v~~~p~~va~Sp----DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~   83 (290)
                      ..-.++|+  ...++...+   +++..|++++|||    ||++||++++.+++|.+||..+   .+.+..+.+.+.....
T Consensus       200 ~~V~v~D~~~~t~~~~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          200 ARIDMIDLWAKEPTKVAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             SEEEEEETTSSSCEEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSS
T ss_pred             CeEEEEECcCCCCcEEEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCc
Confidence            44678888  666666555   5677899999999    9999999998889999999754   4555555442100000


Q ss_pred             CceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc
Q psy11412         84 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM  163 (290)
Q Consensus        84 ~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i  163 (290)
                                   .       ....+..+.+++|||+++.+|+++..               .+.+..++..+   .+.+
T Consensus       274 -------------~-------~~~~~~~v~~i~~s~~~~~~~vs~~~---------------~g~i~vvd~~~---~~~l  315 (543)
T 1nir_A          274 -------------Q-------TYHPEPRVAAIIASHEHPEFIVNVKE---------------TGKVLLVNYKD---IDNL  315 (543)
T ss_dssp             -------------C-------CEESCCCEEEEEECSSSSEEEEEETT---------------TTEEEEEECTT---SSSC
T ss_pred             -------------c-------ccccCCceEEEEECCCCCEEEEEECC---------------CCeEEEEEecC---CCcc
Confidence                         0       00012367889999999999998762               22333344322   1111


Q ss_pred             cccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC----------------cee
Q psy11412        164 RSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG----------------GKI  227 (290)
Q Consensus       164 ~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G----------------g~~  227 (290)
                      ..   .     .++.+..+.+++||||||+||+++..+++|.+||+.+   .+++..+++|                +.+
T Consensus       316 ~~---~-----~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~ph~g~g~~~~~p~~g~~  384 (543)
T 1nir_A          316 TV---T-----SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHPKYGPV  384 (543)
T ss_dssp             EE---E-----EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSBCCTTCEEEEETTTEEE
T ss_pred             ee---E-----EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCCCCCCCcccCCCCCccE
Confidence            10   0     0112345678999999999999998899999999853   4555555543                111


Q ss_pred             -----cCCCceEEecCCCCCCCCC-cceeecccc-cCCcceEEEccCCCEEEEEcC
Q psy11412        228 -----QSDSGVTVIDDPELDKQPD-PVIIKGRRF-TGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       228 -----~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~P~~~a~sPDG~~L~Van~  276 (290)
                           ..+++|+||+......... -..+.-... ++++..++|+|||++|||++.
T Consensus       385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence                 1357788888654110000 111111221 246789999999999999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.68  E-value=2.4e-15  Score=134.49  Aligned_cols=159  Identities=17%  Similarity=0.213  Sum_probs=105.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ....|..+++||||++||+++..++.|.+|++.. .+..+.+..+..+                                
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------------------   83 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--------------------------------   83 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--------------------------------
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--------------------------------
Confidence            3446888999999999999998779999999962 2333343332221                                


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|.+++|+|||++||+++..               ++.+.+++..+-.....+..          +.....+..++|||
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~---------------~~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~  138 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYN---------------AGNVSVTRLEDGLPVGVVDV----------VEGLDGCHSANISP  138 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETT---------------TTEEEEEEEETTEEEEEEEE----------ECCCTTBCCCEECT
T ss_pred             CCCcEEEEcCCCCEEEEEecC---------------CCeEEEEECCCCcccccccc----------ccCCCCceEEEECC
Confidence            378999999999999998762               22333343310000111111          11223467799999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEee--EEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~--~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                      ||++||+++..++.|.+||+...+....+.  .+....                              +..|+.++|+||
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~pd  188 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------------------------------GAGPRHMVFHPN  188 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------------------------------TCCEEEEEECTT
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC------------------------------CCCcceEEECCC
Confidence            999999999788999999996433333222  221111                              126899999999


Q ss_pred             CCEEEEEcC
Q psy11412        268 GKRIYVSSS  276 (290)
Q Consensus       268 G~~L~Van~  276 (290)
                      |++||+++.
T Consensus       189 g~~l~~~~~  197 (343)
T 1ri6_A          189 EQYAYCVNE  197 (343)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            999999874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.67  E-value=6.4e-16  Score=142.75  Aligned_cols=169  Identities=9%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++++||||++||+++.+  +|.+|++...+....+.....                                ++.|.
T Consensus        41 ~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~--------------------------------~g~~~   86 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPI--------------------------------GGHPR   86 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEEC--------------------------------CSSGG
T ss_pred             CCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeec--------------------------------CCCCc
Confidence            68899999999999999974  999999962222221111101                                12478


Q ss_pred             EEEEccCCCE--EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc-cccCccccCccccCCCCceeEEEEccC
Q psy11412        114 MFQLSLDGKR--IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM-RSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       114 ~vafsPdG~~--lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      +++|+|||++  +|+++.  .....+..... ..++.+.++++..   ...+ ..+.     .+.......+.+++||||
T Consensus        87 ~~~~spdg~~l~~~~~~~--~~~~~~~~~~~-~~~g~v~v~~~~~---~g~~~~~~~-----~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           87 ANDADTNTRAIFLLAAKQ--PPYAVYANPFY-KFAGYGNVFSVSE---TGKLEKNVQ-----NYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             GGCTTSCCEEEEEEECSS--TTCCEEEEEES-SSCCEEEEEEECT---TCCEEEEEE-----EEECCTTCCEEEEEECTT
T ss_pred             cEEECCCCCEEEEEEecC--Ccceeccceee-cCCceEEEEccCC---CCcCcceEe-----eEEeCCCCcceEEEECCC
Confidence            8999999996  455441  00000000000 0011222222210   0000 0000     000012246788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      |++||++++++++|.+||+...+....+..+....                             -+.+|++++|||||++
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-----------------------------~g~~p~~~~~spdg~~  206 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-----------------------------PGDHPRWVAMHPTGNY  206 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-----------------------------TTCCEEEEEECTTSSE
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-----------------------------CCCCCCEeEECCCCCE
Confidence            99999999889999999996223333344443210                             0127999999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       207 l~v~~~  212 (365)
T 1jof_A          207 LYALME  212 (365)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.65  E-value=9.2e-15  Score=134.23  Aligned_cols=164  Identities=20%  Similarity=0.275  Sum_probs=115.5

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -++.|+...+.....   .....+.+++++|||++||+++..+++|++||+.+   .+.+..+..+              
T Consensus        14 v~v~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~--------------   73 (391)
T 1l0q_A           14 ISVIDVTSNKVTATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG--------------   73 (391)
T ss_dssp             EEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS--------------
T ss_pred             EEEEECCCCeEEEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEECC--------------
Confidence            567777776665544   44557899999999999998887789999999864   3444333222              


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                        ..+..++|+|||++||+++..               .+.+.+++...   .+.+..      
T Consensus        74 ------------------~~v~~~~~spdg~~l~~~~~~---------------~~~v~v~d~~~---~~~~~~------  111 (391)
T 1l0q_A           74 ------------------SSPQGVAVSPDGKQVYVTNMA---------------SSTLSVIDTTS---NTVAGT------  111 (391)
T ss_dssp             ------------------SSEEEEEECTTSSEEEEEETT---------------TTEEEEEETTT---TEEEEE------
T ss_pred             ------------------CCccceEECCCCCEEEEEECC---------------CCEEEEEECCC---CeEEEE------
Confidence                              478899999999999988752               12333333321   111111      


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          +..+..+..++|+|||++||+++..++.|.+||+..   .+.+..+..+.                          
T Consensus       112 ----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~--------------------------  158 (391)
T 1l0q_A          112 ----VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---KAVINTVSVGR--------------------------  158 (391)
T ss_dssp             ----EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECCS--------------------------
T ss_pred             ----EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEecCC--------------------------
Confidence                112235678999999999998887899999999853   34555444433                          


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                            .|..++|+|||++||+++.
T Consensus       159 ------~~~~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A          159 ------SPKGIAVTPDGTKVYVANF  177 (391)
T ss_dssp             ------SEEEEEECTTSSEEEEEET
T ss_pred             ------CcceEEECCCCCEEEEEeC
Confidence                  6899999999999988854

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=1.5e-15  Score=143.67  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=90.3

Q ss_pred             EEEcCCCCEEEEEeCC----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         38 ILISLDDRYLYTSNWM----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        38 va~SpDGr~Lyva~~~----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..|||++|||+|..    +++|.++|..   ..+++.++.+|                                ..| 
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---t~~v~~~I~vG--------------------------------~~P-   81 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---AGRVIGMIDGG--------------------------------FLP-   81 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETT---TTEEEEEEEEC--------------------------------SSC-
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECC---CCeEEEEEECC--------------------------------CCC-
Confidence            3567999999999986    7899999975   36777777765                                467 


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      |++|||||++|||+|...+....      .+..+.+.++|.   ...+.+.+++...  +-....+..|.+++||||||+
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~------G~~~~~VsviD~---~t~~v~~~I~v~~--g~r~~~g~~P~~~a~spDGk~  150 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIAR------GERTDYVEVFDP---VTLLPTADIELPD--APRFLVGTYPWMTSLTPDGKT  150 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTE------EEEEEEEEEECT---TTCCEEEEEEETT--CCCCCBSCCGGGEEECTTSSE
T ss_pred             cEEECCCCCEEEEEccccccccc------CCCCCEEEEEEC---CCCeEEEEEECCC--ccccccCCCCceEEEcCCCCE
Confidence            49999999999999852100000      000122333333   2233344332210  000001236788999999999


Q ss_pred             EEEEeCC-CCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      ||++|+. +++|+|+|+..   .+.+++|++++
T Consensus       151 lyVan~~~~~~VsVID~~t---~~vv~tI~v~g  180 (386)
T 3sjl_D          151 LLFYQFSPAPAVGVVDLEG---KAFKRMLDVPD  180 (386)
T ss_dssp             EEEEECSSSCEEEEEETTT---TEEEEEEECCS
T ss_pred             EEEEEcCCCCeEEEEECCC---CcEEEEEECCC
Confidence            9999975 78999999853   67888887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.64  E-value=1.5e-14  Score=132.31  Aligned_cols=168  Identities=13%  Similarity=0.139  Sum_probs=102.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeC---CCCeEEEEEcCCC-CCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         32 PAMVTDILISLDDRYLYTSNW---MHGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~---~~g~V~v~dv~d~-~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      ...|..++|||||++||+++.   ..+.|.+|++... +..+.+.....+                              
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------------------   98 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------------------   98 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------------------
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------------------
Confidence            346888999999999999987   3589999999653 333444332221                              


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecc-eeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD-EIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                       +..|.++++  ||++||+++...+.+.++....   ++ .+..+ ....        ....+...  .......+..++
T Consensus        99 -~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~---~g-~~~~~~~~~~--------~~g~~~~~--~~~~~~~~~~~~  161 (361)
T 3scy_A           99 -GADPCYLTT--NGKNIVTANYSGGSITVFPIGQ---DG-ALLPASDVIE--------FKGSGPDK--ERQTMPHLHCVR  161 (361)
T ss_dssp             -SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT---TS-CBCSCSEEEE--------CCCCCSCT--TTCSSCCEEEEE
T ss_pred             -CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC---CC-cCcccceeEE--------ccCCCCCc--cccCCCcceEEE
Confidence             257889998  9999999986333322221110   11 11000 0000        00000000  000123567899


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCC------ceEe---eEEeeCceecCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAH------PVLV---GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  257 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~------~~~v---~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (290)
                      |||||++||+++.+++.|.+|++.....      ....   ..+....                              +.
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------~~  211 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP------------------------------GS  211 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT------------------------------TC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC------------------------------CC
Confidence            9999999999998899999999964321      2111   1111110                              23


Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      +|++++|+|||++||+++.
T Consensus       212 ~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             CEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEcCCCCEEEEEcC
Confidence            7999999999999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.64  E-value=1.6e-14  Score=132.54  Aligned_cols=165  Identities=17%  Similarity=0.256  Sum_probs=116.7

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|+...+.....   .....+.+++++|||++||+++..++.|.+||+..   .+.+..+..              
T Consensus        97 ~v~v~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~--------------  156 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTV---KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---KAVINTVSV--------------  156 (391)
T ss_dssp             EEEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEEC--------------
T ss_pred             EEEEEECCCCeEEEEE---eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEec--------------
Confidence            4567788877765554   45567899999999999998888899999999864   333333222              


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        +..|..++|+|||++||+++..               ++.+.+++...   .+.+..     
T Consensus       157 ------------------~~~~~~~~~~~dg~~l~~~~~~---------------~~~v~~~d~~~---~~~~~~-----  195 (391)
T 1l0q_A          157 ------------------GRSPKGIAVTPDGTKVYVANFD---------------SMSISVIDTVT---NSVIDT-----  195 (391)
T ss_dssp             ------------------CSSEEEEEECTTSSEEEEEETT---------------TTEEEEEETTT---TEEEEE-----
T ss_pred             ------------------CCCcceEEECCCCCEEEEEeCC---------------CCEEEEEECCC---CeEEEE-----
Confidence                              2578899999999999988762               22333333321   111111     


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeC--CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV  248 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~  248 (290)
                           +.....+..++|+|||++||+++.  .++.|.+||+..   .+.+..++.+.                       
T Consensus       196 -----~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~-----------------------  244 (391)
T 1l0q_A          196 -----VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGP-----------------------  244 (391)
T ss_dssp             -----EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCS-----------------------
T ss_pred             -----EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCC-----------------------
Confidence                 112245678999999999999986  678999999853   35555554433                       


Q ss_pred             eeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        249 IIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                               .|..++|+|||++||+++.
T Consensus       245 ---------~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          245 ---------DPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             ---------SEEEEEECTTSSEEEEEET
T ss_pred             ---------CccEEEEccCCCEEEEEcC
Confidence                     6889999999999998853

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=8.7e-15  Score=130.53  Aligned_cols=209  Identities=16%  Similarity=0.101  Sum_probs=121.8

Q ss_pred             EEEEecCCCccCCCCCCCCCCC---ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPA---MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~---~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      -.++|+...++....   +++.   .|.++++||||++||+++..++.|.+||+.+.   +.+..+..+..   .     
T Consensus        13 v~~~d~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~---~-----   78 (337)
T 1pby_B           13 LVVIDTEKMAVDKVI---TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTP---E-----   78 (337)
T ss_dssp             EEEEETTTTEEEEEE---ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBT---T-----
T ss_pred             EEEEECCCCcEEEEE---EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCc---c-----
Confidence            457788777766554   4555   68999999999999999988899999998652   33333333210   0     


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCC---CCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF---SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~---~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                        ..+..|.+++|+|||++||+++...   ..+..       ...+.+.+++...   .+.+..
T Consensus        79 ------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~-------~~~~~i~v~d~~~---~~~~~~  130 (337)
T 1pby_B           79 ------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFE-------VQPTRVALYDAET---LSRRKA  130 (337)
T ss_dssp             ------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEE-------ECCCEEEEEETTT---TEEEEE
T ss_pred             ------------------cccccccceEECCCCCEEEEEeccccccccccc-------ccCceEEEEECCC---CcEEEE
Confidence                              0013688899999999999985210   00000       0012333333321   111111


Q ss_pred             cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc-----eecCCC---------
Q psy11412        166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG-----KIQSDS---------  231 (290)
Q Consensus       166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg-----~~~~~~---------  231 (290)
                                ++.+..+.+++|||||++||++   ++.|.+||+..   .+.+..++.+.     .+.+++         
T Consensus       131 ----------~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          131 ----------FEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEA---GTLVEDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             ----------EECCSSCCCEEECTTSSCEEEE---SSSEEEEETTT---TEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             ----------EeCCCCcceeEECCCCCEEEEe---CCeEEEEECCC---CcEeeeeeccccCCCceeCCCccEEeeeccC
Confidence                      1112345679999999999998   46899999853   34444444432     111111         


Q ss_pred             -------------------------ceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCC
Q psy11412        232 -------------------------GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWD  282 (290)
Q Consensus       232 -------------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~  282 (290)
                                               .|.++|.......    .+.-......|..++|+|||++||+++..+..||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d  266 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD  266 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEE
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCce----EeecCCCCCceeeEEECCCCCEEEEeCCeEEEEE
Confidence                                     2456665432110    0000011235778999999999998866555554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=9.2e-15  Score=131.72  Aligned_cols=159  Identities=14%  Similarity=0.065  Sum_probs=104.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC------CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWM------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~------~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      +...|.++++||||++||+++..      +++|.+||..+   .+.+..+..+                           
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~---------------------------   88 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIHND---------------------------   88 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEEES---------------------------
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEecC---------------------------
Confidence            45679999999999999999875      67899999764   3344444332                           


Q ss_pred             ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                           ..|.+++|+|||+++|+++...+               .+..++..+   .+.+..++......-....+..+.+
T Consensus        89 -----~~~~~~~~s~dg~~l~v~~~~~~---------------~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  145 (353)
T 3vgz_A           89 -----LKPFGATINNTTQTLWFGNTVNS---------------AVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRE  145 (353)
T ss_dssp             -----SCCCSEEEETTTTEEEEEETTTT---------------EEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred             -----CCcceEEECCCCCEEEEEecCCC---------------EEEEEeCCC---CeeEEEEecCCCccccccCCCCCce
Confidence                 46888999999999999887332               222222211   1111111110000000001124788


Q ss_pred             EEEccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        185 ILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      +++||||++||+++++ ++.|.+||+..   .+.+..++..+                               ..|..++
T Consensus       146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~-------------------------------~~~~~~~  191 (353)
T 3vgz_A          146 LVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQNTG-------------------------------KMSTGLA  191 (353)
T ss_dssp             EEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECCCC-------------------------------TTCCCCE
T ss_pred             EEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecCCC-------------------------------CccceEE
Confidence            9999999999999854 67899999853   45555554222                               1588999


Q ss_pred             EccCCCEEEEEcC
Q psy11412        264 LSLDGKRIYVSSS  276 (290)
Q Consensus       264 ~sPDG~~L~Van~  276 (290)
                      |+|||++||+++.
T Consensus       192 ~s~dg~~l~~~~~  204 (353)
T 3vgz_A          192 LDSEGKRLYTTNA  204 (353)
T ss_dssp             EETTTTEEEEECT
T ss_pred             ECCCCCEEEEEcC
Confidence            9999999999976

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=8.5e-16  Score=145.37  Aligned_cols=215  Identities=16%  Similarity=0.069  Sum_probs=126.3

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ   81 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~   81 (290)
                      .--|||..+.++...+   +++..|+ +++||||++||++|.         .++.|.+||...   .+.++.+.++... 
T Consensus        60 ~V~ViD~~t~~v~~~I---~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---~~v~~~I~v~~g~-  131 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMI---DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAP-  131 (386)
T ss_dssp             EEEEEETTTTEEEEEE---EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC-
T ss_pred             EEEEEECCCCeEEEEE---ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CeEEEEEECCCcc-
Confidence            5668999999988876   7888896 999999999999983         257899999754   5667777665200 


Q ss_pred             CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc
Q psy11412         82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN  161 (290)
Q Consensus        82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (290)
                                             ....|..|++++|||||++|||+|+..              .+.+.++|+.   ..+
T Consensus       132 -----------------------r~~~g~~P~~~a~spDGk~lyVan~~~--------------~~~VsVID~~---t~~  171 (386)
T 3sjl_D          132 -----------------------RFLVGTYPWMTSLTPDGKTLLFYQFSP--------------APAVGVVDLE---GKA  171 (386)
T ss_dssp             -----------------------CCCBSCCGGGEEECTTSSEEEEEECSS--------------SCEEEEEETT---TTE
T ss_pred             -----------------------ccccCCCCceEEEcCCCCEEEEEEcCC--------------CCeEEEEECC---CCc
Confidence                                   001246899999999999999998621              1233333332   233


Q ss_pred             cccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEE--ecCCCC-ceE--eeEEeeCce---ecCCCce
Q psy11412        162 EMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYD--IRDTAH-PVL--VGQIFLGGK---IQSDSGV  233 (290)
Q Consensus       162 ~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~D--v~d~~~-~~~--v~~i~~Gg~---~~~~~~v  233 (290)
                      .+.+++.....+ ..|.+.. .-+++++||+++|+.....+.+..-.  +.++.. +..  .......|+   ++.+++|
T Consensus       172 vv~tI~v~g~~~-~~P~g~~-~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V  249 (386)
T 3sjl_D          172 FKRMLDVPDCYH-IFPTAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI  249 (386)
T ss_dssp             EEEEEECCSEEE-EEEEETT-EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred             EEEEEECCCcce-eecCCCc-eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEE
Confidence            444333210000 1111111 12589999999999986556662210  111111 111  111112332   2556778


Q ss_pred             EEecCCCCCC-CCCcc-------eeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        234 TVIDDPELDK-QPDPV-------IIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       234 ~~~~~~~~~~-~~~~~-------~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      +++|..+... .-.+.       ...|++. ++.+.++++||+++|||++.
T Consensus       250 ~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          250 HQIDLSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEE
T ss_pred             EEEECCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEec
Confidence            9998754321 00100       0122222 23456999999999999863

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=1.3e-14  Score=136.14  Aligned_cols=137  Identities=12%  Similarity=-0.008  Sum_probs=85.9

Q ss_pred             EEEcCCCCEEEEEeC-CCC---eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         38 ILISLDDRYLYTSNW-MHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        38 va~SpDGr~Lyva~~-~~g---~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      +..+||++++|++|. +.+   +|.+||..+   .+++..+..|                                ..| 
T Consensus        26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t---~~~~~~i~~g--------------------------------~~p-   69 (373)
T 2mad_H           26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGS---GSILGHVNGG--------------------------------FLP-   69 (373)
T ss_pred             ccCCCCCCEEEEeCCcccCCccEEEEEECCC---CeEEEEecCC--------------------------------CCC-
Confidence            456799999999997 555   889999754   4455554443                                578 


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++|||||++|||+|++.......      ..++.+..+|...   .+.+..++.... . ....+..|.+++||||||+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg------~~~~~v~viD~~t---~~~~~~i~~~~~-~-~~~~g~~p~~~~~spDG~~  138 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKG------KRTDYVEVFDPVT---FLPIADIELPDA-P-RFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccC------CCCCeEEEEECCC---CcEEEEEECCCc-c-ccccCCCccceEECCCCCE
Confidence            999999999999998642211000      0122333344322   223333221100 0 0001245778999999999


Q ss_pred             EEEEeCC-CCcEEEEEecCCCCceEeeE-EeeCc
Q psy11412        194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQ-IFLGG  225 (290)
Q Consensus       194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~-i~~Gg  225 (290)
                      ||++|+. +++|.++| ..   .+.+.+ +++++
T Consensus       139 l~v~n~~~~~~v~viD-~t---~~~~~~~i~~~~  168 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QG---GSSDDQLLSSPT  168 (373)
T ss_pred             EEEEecCCCCeEEEEE-CC---CCEEeEEcCCCc
Confidence            9999976 68899998 53   456677 66643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=8.4e-15  Score=134.07  Aligned_cols=174  Identities=13%  Similarity=0.008  Sum_probs=115.1

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|..+.++...+   +....|+++++++|| +||+++..++.|.+||..+   .++...+.++...          
T Consensus        65 ~v~viD~~t~~~~~~i---~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~~~----------  127 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRI---TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT---YEITGYIECPDMD----------  127 (328)
T ss_dssp             EEEEEETTTCCEEEEE---ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT---TEEEEEEECTTCC----------
T ss_pred             EEEEEECcccEEEEEc---CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC---CeEEEEEEcCCcc----------
Confidence            3467888877776655   455689999999998 8999995588999999754   4555555554100          


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC-CCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne-l~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                                      .....|.+|++  ++++|||++. ..+               .+.++|..+   .+.+..+   
T Consensus       128 ----------------~~~~~p~~i~~--~~~~lyv~~~~~~~---------------~v~viD~~t---~~~~~~i---  168 (328)
T 3dsm_A          128 ----------------MESGSTEQMVQ--YGKYVYVNCWSYQN---------------RILKIDTET---DKVVDEL---  168 (328)
T ss_dssp             ----------------TTTCBCCCEEE--ETTEEEEEECTTCC---------------EEEEEETTT---TEEEEEE---
T ss_pred             ----------------ccCCCcceEEE--ECCEEEEEcCCCCC---------------EEEEEECCC---CeEEEEE---
Confidence                            00137889999  7889999874 122               333333221   1112211   


Q ss_pred             ccCccccCCCCceeEEEEccCCCEEEEEeCCC----------CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCC
Q psy11412        170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMH----------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP  239 (290)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~----------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~  239 (290)
                             +.+..|.+|+++|||+ +|++++++          +.|.+||..   ..+++.++.++.              
T Consensus       169 -------~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~~~~--------------  223 (328)
T 3dsm_A          169 -------TIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFKFKL--------------  223 (328)
T ss_dssp             -------ECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETT---TTEEEEEEECCT--------------
T ss_pred             -------EcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECC---CCeEEEEEecCC--------------
Confidence                   1223467899999998 56666565          789999864   345666665532              


Q ss_pred             CCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCC
Q psy11412        240 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPW  281 (290)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~  281 (290)
                                      +.+|+.++|+|||++||++|+....+
T Consensus       224 ----------------g~~p~~la~~~d~~~lyv~~~~v~~~  249 (328)
T 3dsm_A          224 ----------------GDWPSEVQLNGTRDTLYWINNDIWRM  249 (328)
T ss_dssp             ----------------TCCCEEEEECTTSCEEEEESSSEEEE
T ss_pred             ----------------CCCceeEEEecCCCEEEEEccEEEEE
Confidence                            12799999999999999999743333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.62  E-value=6.5e-15  Score=132.74  Aligned_cols=187  Identities=17%  Similarity=0.193  Sum_probs=123.5

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      ..-.+||+++.++....   +++..+....++.+|++||++++.++.|.+||..+   .++++++..+            
T Consensus        44 s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t---~~v~~~i~~g------------  105 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT---LSNIKNFTHQ------------  105 (266)
T ss_dssp             CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT---TEEEEEEECC------------
T ss_pred             CEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC---CcEEEEEECC------------
Confidence            35678999999998876   67776665556667899999999999999999753   5666665442            


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                                           .|.++.+++||++||+++. .+               .+..+|..+   .+.++.++.+
T Consensus       106 ---------------------~~~g~glt~Dg~~l~vs~g-s~---------------~l~viD~~t---~~v~~~I~Vg  145 (266)
T 2iwa_A          106 ---------------------MKDGWGLATDGKILYGSDG-TS---------------ILYEIDPHT---FKLIKKHNVK  145 (266)
T ss_dssp             ---------------------SSSCCEEEECSSSEEEECS-SS---------------EEEEECTTT---CCEEEEEECE
T ss_pred             ---------------------CCCeEEEEECCCEEEEECC-CC---------------eEEEEECCC---CcEEEEEEEC
Confidence                                 2445678899999999874 22               232233222   2223332221


Q ss_pred             ccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412        170 SLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV  248 (290)
Q Consensus       170 ~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~  248 (290)
                      ..     +.+ ..+.++.+. || .||++++..+.|+++|..   +.+.++.|++++.....                  
T Consensus       146 ~~-----~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~---tg~V~~~I~~~g~~~~~------------------  197 (266)
T 2iwa_A          146 YN-----GHRVIRLNELEYI-NG-EVWANIWQTDCIARISAK---DGTLLGWILLPNLRKKL------------------  197 (266)
T ss_dssp             ET-----TEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETT---TCCEEEEEECHHHHHHH------------------
T ss_pred             CC-----CcccccceeEEEE-CC-EEEEecCCCCeEEEEECC---CCcEEEEEECCCccccc------------------
Confidence            10     001 246678888 77 799999999999999875   46788999886420000                  


Q ss_pred             eeecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412        249 IIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI  285 (290)
Q Consensus       249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~  285 (290)
                      ...+......|++++|+|||++|||+|.   .|.+.|
T Consensus       198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk---~~~~v~  231 (266)
T 2iwa_A          198 IDEGFRDIDVLNGIAWDQENKRIFVTGK---LWPKLF  231 (266)
T ss_dssp             HHTTCTTCCCEEEEEEETTTTEEEEEET---TCSEEE
T ss_pred             ccccccccCceEEEEEcCCCCEEEEECC---CCCeEE
Confidence            0000000136899999999999999986   565544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.61  E-value=1.8e-15  Score=145.16  Aligned_cols=122  Identities=47%  Similarity=0.906  Sum_probs=95.3

Q ss_pred             eecCCCceeEEEEEecCCCccCCCCCCCC-----CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEee
Q psy11412          2 YRQSDGTYKADKVIDIPAKQVQGYPGGDK-----VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL   76 (290)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~   76 (290)
                      +++ +|+|++.++||+++.++...+...+     ++..|.+|.+|||||+|||+|++.|.|++||+.+++++++++.+.+
T Consensus       286 ~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t  364 (462)
T 2ece_A          286 FYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL  364 (462)
T ss_dssp             EEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             Eec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence            444 4999999999999988776431111     2468999999999999999999999999999988788999999999


Q ss_pred             cccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeeccc
Q psy11412         77 GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD  141 (290)
Q Consensus        77 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~  141 (290)
                      ||.+...              .++   .+.+...+||+|++|||||+|||+|+|-+.||..+|++
T Consensus       365 GG~~~~~--------------~~~---~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~  412 (462)
T 2ece_A          365 GGIFHRA--------------DHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE  412 (462)
T ss_dssp             BTTTTCB--------------CCT---TSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred             CCeeccc--------------ccc---ccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence            8532110              000   01111248999999999999999999999999888876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=3.5e-14  Score=140.51  Aligned_cols=202  Identities=10%  Similarity=0.037  Sum_probs=127.0

Q ss_pred             EEEEEecC--CCccCCCCCCCCCCCceEEEEEc----CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc----
Q psy11412         11 ADKVIDIP--AKQVQGYPGGDKVPAMVTDILIS----LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI----   80 (290)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~v~~~p~~va~S----pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~----   80 (290)
                      .-.+||+.  ..++...+   +++..|++++||    |||++|||+|+..++|.+||..+   .+.+..+.+++..    
T Consensus       219 ~V~viD~~~~t~~~v~~i---~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          219 KVNMIDLWMKEPTTVAEI---KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             EEEEEETTSSSCCEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTC
T ss_pred             eEEEEECCCCCCcEeEEE---ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEeccccccccc
Confidence            35678885  55666554   678899999999    79999999999999999999643   5556656554210    


Q ss_pred             --cC----------------------CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcce
Q psy11412         81 --QS----------------------DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK  136 (290)
Q Consensus        81 --~~----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~  136 (290)
                        .+                      .+.+++++.....    ...+.....+..|+++.|+||||++|+++...+    
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn----  364 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEISAERFLHDGGLDGSHRYFITAANARN----  364 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT----
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeeeccccccCceECCCCCEEEEEeCCCC----
Confidence              00                      1222232211100    001112233568899999999999999987332    


Q ss_pred             eecccccCCCceeecceeeeeeecccccccCc-cccCccccCCCCceeEEEEccCCCEEEEEe-CCCCcEEEEEecCCCC
Q psy11412        137 EIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL-SSLGSWKYPARSMVTDILISLDDRYLYTSN-WMHGDIRQYDIRDTAH  214 (290)
Q Consensus       137 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~-~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~-r~~~~V~v~Dv~d~~~  214 (290)
                                 .+.++|..+   .+.+..++. +     ..|.+..... .++||++.+|+++ -++++|++||.....+
T Consensus       365 -----------~V~ViD~~t---~kl~~~i~vgg-----~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~  424 (567)
T 1qks_A          365 -----------KLVVIDTKE---GKLVAIEDTGG-----QTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGH  424 (567)
T ss_dssp             -----------EEEEEETTT---TEEEEEEECSS-----SSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             -----------eEEEEECCC---CcEEEEEeccC-----cCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence                       333333322   223333222 1     1122211112 2699988888765 4678999999854222


Q ss_pred             ----ceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        215 ----PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       215 ----~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                          .+.++++++++.                               ++-.+.++|||++|||+|.+
T Consensus       425 ~~~~~kvv~~i~~~g~-------------------------------g~~~i~~~p~~~~l~v~~~~  460 (567)
T 1qks_A          425 PDNAWKILDSFPALGG-------------------------------GSLFIKTHPNSQYLYVDATL  460 (567)
T ss_dssp             TTTBTSEEEEEECSCS-------------------------------CCCCEECCTTCSEEEEECTT
T ss_pred             ccccCEEEEEEecCCC-------------------------------CCEEEEeCCCCCeEEEecCC
Confidence                567888877551                               56779999999999999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.59  E-value=8.2e-15  Score=140.36  Aligned_cols=134  Identities=12%  Similarity=0.040  Sum_probs=88.9

Q ss_pred             CCCCEEEEEeCCC----CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         42 LDDRYLYTSNWMH----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        42 pDGr~Lyva~~~~----g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      ||++++||+|.+.    ++|.++|..+   .+++.++.+|                                ..| +|+|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG--------------------------------~~P-gia~  125 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG--------------------------------FLP-HPVA  125 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC--------------------------------SSC-EEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC--------------------------------CCC-ceEE
Confidence            7999999999865    7999999754   6778877775                                478 9999


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      ||||++|||+|...+....      ...++.+.++|..   ..+.+.+++.... . ....+..|.+++||||||+||++
T Consensus       126 SpDgk~lyVan~~~~~~~~------G~~~~~VsviD~~---t~~vv~~I~v~g~-~-r~~~g~~P~~~~~spDGk~lyV~  194 (426)
T 3c75_H          126 AEDGSFFAQASTVFERIAR------GKRTDYVEVFDPV---TFLPIADIELPDA-P-RFLVGTYQWMNALTPDNKNLLFY  194 (426)
T ss_dssp             CTTSSCEEEEEEEEEETTE------EEEEEEEEEECTT---TCCEEEEEEETTC-C-CCCBSCCGGGSEECTTSSEEEEE
T ss_pred             CCCCCEEEEEecccccccc------CCCCCEEEEEECC---CCcEEEEEECCCc-c-ccccCCCcceEEEcCCCCEEEEE
Confidence            9999999999842100000      0011233333332   2333333321100 0 00012357789999999999999


Q ss_pred             eCC-CCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        198 NWM-HGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       198 ~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |+. +++|+++|+.   ..+.+++|++++
T Consensus       195 n~~~~~~VsVID~~---t~kvv~~I~v~g  220 (426)
T 3c75_H          195 QFSPAPAVGVVDLE---GKTFDRMLDVPD  220 (426)
T ss_dssp             ECSSSCEEEEEETT---TTEEEEEEECCS
T ss_pred             ecCCCCeEEEEECC---CCeEEEEEEcCC
Confidence            986 7899999885   367888998865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.57  E-value=1.8e-13  Score=127.21  Aligned_cols=164  Identities=21%  Similarity=0.243  Sum_probs=112.7

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC-------CCCeEEEEEcCCCCCceeeeEEeecccccCCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW-------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS   84 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~-------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~   84 (290)
                      -.++|+...+.....   .....+.+++++|||++|++++.       .+|.|.+||+.+.   +.+..+...       
T Consensus       236 i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~~~~~-------  302 (433)
T 3bws_A          236 ISVIDRKTKLEIRKT---DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDTIGPP-------  302 (433)
T ss_dssp             EEEEETTTTEEEEEC---CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEEEEEE-------
T ss_pred             EEEEECCCCcEEEEe---cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEeeccCC-------
Confidence            456777766655544   45567999999999999999985       4679999998652   333322111       


Q ss_pred             ceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccc
Q psy11412         85 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMR  164 (290)
Q Consensus        85 ~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~  164 (290)
                                               ..+++++|+|+|+++|+++...               +.+.+++...   .+.+.
T Consensus       303 -------------------------~~~~~~~~~~~g~~l~~~~~~~---------------~~v~v~d~~~---~~~~~  339 (433)
T 3bws_A          303 -------------------------GNKRHIVSGNTENKIYVSDMCC---------------SKIEVYDLKE---KKVQK  339 (433)
T ss_dssp             -------------------------ECEEEEEECSSTTEEEEEETTT---------------TEEEEEETTT---TEEEE
T ss_pred             -------------------------CCcceEEECCCCCEEEEEecCC---------------CEEEEEECCC---CcEEE
Confidence                                     3688999999999999986522               2333333221   11111


Q ss_pred             ccCccccCccccCCCCceeEEEEccCCCEEEEEeCCC--------------CcEEEEEecCCCCceEeeEEeeCceecCC
Q psy11412        165 SMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH--------------GDIRQYDIRDTAHPVLVGQIFLGGKIQSD  230 (290)
Q Consensus       165 ~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~--------------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~  230 (290)
                      .          ++....+..++++|||++||+++..+              +.|.+||+.+   .+.+..+..+.     
T Consensus       340 ~----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~-----  401 (433)
T 3bws_A          340 S----------IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGN-----  401 (433)
T ss_dssp             E----------EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSS-----
T ss_pred             E----------ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCC-----
Confidence            1          11224577899999999999998653              4899999853   45555554433     


Q ss_pred             CceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        231 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                                 .|..++|+|||++|++++.
T Consensus       402 ---------------------------~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          402 ---------------------------QPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             ---------------------------SEEEEEECTTSCEEEEEET
T ss_pred             ---------------------------CCceEEEcCCCCEEEEEEC
Confidence                                       6899999999999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=1.4e-13  Score=123.40  Aligned_cols=150  Identities=21%  Similarity=0.239  Sum_probs=88.9

Q ss_pred             EEEEecCCCccCCCCCCCCCCC--ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPA--MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~--~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      -.++|+...++....   +++.  .|.+++++|||+++|+++..++.|.+||+.+   .+.+..+..++.          
T Consensus        23 v~~~d~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~~~----------   86 (349)
T 1jmx_B           23 LHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSV----------   86 (349)
T ss_dssp             EEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCS----------
T ss_pred             EEEEECCCCcEEEEE---ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEcccc----------
Confidence            457787777665544   4555  6899999999999999998889999999864   344433333210          


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCC-CcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS-PWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~-~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                              +       ...+..|.+++|+|||++||++++... ..+.  +.   ...+.+.+++..+   .+....+. 
T Consensus        87 --------~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~--~~---~~~~~i~~~d~~~---~~~~~~~~-  142 (349)
T 1jmx_B           87 --------P-------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDH--YV---VKPPRLEVFSTAD---GLEAKPVR-  142 (349)
T ss_dssp             --------T-------TEEEECSSCEEECTTSSEEEEEEEEEEECSSC--EE---ECCCEEEEEEGGG---GGGBCCSE-
T ss_pred             --------c-------ccccccccceEECCCCCEEEEEcccccccccc--cc---cCCCeEEEEECCC---ccccceee-
Confidence                    0       000135788999999999999874100 0000  00   0112333333321   11111100 


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                            ....+..+..++|||||+ ||+++   +.|.+||+.+
T Consensus       143 ------~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~~d~~~  175 (349)
T 1jmx_B          143 ------TFPMPRQVYLMRAADDGS-LYVAG---PDIYKMDVKT  175 (349)
T ss_dssp             ------EEECCSSCCCEEECTTSC-EEEES---SSEEEECTTT
T ss_pred             ------eccCCCcccceeECCCCc-EEEcc---CcEEEEeCCC
Confidence                  011123466789999999 88864   3499998753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=4.2e-14  Score=129.39  Aligned_cols=171  Identities=12%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             EEEEecCCCccCCCCCCCCCCC------ceEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccccCCC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPA------MVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS   84 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~------~p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~   84 (290)
                      -.++|....++....   +++.      .|+++++  ++++||+++++ +++|.+||..+   .+++..+..+       
T Consensus       107 v~~iD~~t~~~~~~i---~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t---~~~~~~i~~g-------  171 (328)
T 3dsm_A          107 IFIINPKTYEITGYI---ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET---DKVVDELTIG-------  171 (328)
T ss_dssp             EEEEETTTTEEEEEE---ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT---TEEEEEEECS-------
T ss_pred             EEEEECCCCeEEEEE---EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC---CeEEEEEEcC-------
Confidence            457788877776655   5666      8999999  78899999984 89999999864   3445444333       


Q ss_pred             ceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccc
Q psy11412         85 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM  163 (290)
Q Consensus        85 ~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i  163 (290)
                                               ..|++++++|||+ +|+++... ....   +.   .+.+.+.+++..+   .+..
T Consensus       172 -------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~---~~---~~~~~v~~id~~t---~~v~  216 (328)
T 3dsm_A          172 -------------------------IQPTSLVMDKYNK-MWTITDGGYEGSP---YG---YEAPSLYRIDAET---FTVE  216 (328)
T ss_dssp             -------------------------SCBCCCEECTTSE-EEEEBCCBCTTCS---SC---BCCCEEEEEETTT---TEEE
T ss_pred             -------------------------CCccceEEcCCCC-EEEEECCCccCCc---cc---cCCceEEEEECCC---CeEE
Confidence                                     5788999999998 55554311 0000   00   0012333333221   1111


Q ss_pred             cccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCC
Q psy11412        164 RSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK  243 (290)
Q Consensus       164 ~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~  243 (290)
                      ..+        .++.+..|.+|+|||||++||+++.   .|.+||+... .......++.+                   
T Consensus       217 ~~~--------~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~-~~~~~~~~~~~-------------------  265 (328)
T 3dsm_A          217 KQF--------KFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD-RVPVRPFLEFR-------------------  265 (328)
T ss_dssp             EEE--------ECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS-SCCSSCSBCCC-------------------
T ss_pred             EEE--------ecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC-ceeeeeeecCC-------------------
Confidence            111        1222346889999999999999985   8999987431 11000111111                   


Q ss_pred             CCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        244 QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       244 ~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                                  +..|++|+++|++++|||+|
T Consensus       266 ------------~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          266 ------------DTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ------------SSCEEEEEECTTTCCEEEEE
T ss_pred             ------------CCceEEEEEcCCCCeEEEEc
Confidence                        13799999999999999998

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.54  E-value=1.5e-13  Score=122.45  Aligned_cols=58  Identities=10%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      .+.+++|||||++||++   ++.|.+||+..   .+.+..+..+.                                .|.
T Consensus       242 ~~~~~~~s~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~--------------------------------~~~  283 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA---YNVLESFDLEK---NASIKRVPLPH--------------------------------SYY  283 (337)
T ss_dssp             CEEEEEECTTSSEEEEE---ESEEEEEETTT---TEEEEEEECSS--------------------------------CCC
T ss_pred             ceeeEEECCCCCEEEEe---CCeEEEEECCC---CcCcceecCCC--------------------------------cee
Confidence            46679999999999998   47899999853   45566655444                                689


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .++|+|||++||+++.
T Consensus       284 ~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             EEEECTTSCEEEEESB
T ss_pred             eEEECCCCCEEEEEcC
Confidence            9999999999999854

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.51  E-value=5.7e-14  Score=132.06  Aligned_cols=181  Identities=10%  Similarity=-0.122  Sum_probs=107.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCC--------CceEEEEEcCCCCEEEEEeCC-CCeEEE--EEcCCCCCceeeeEEeeccc
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVP--------AMVTDILISLDDRYLYTSNWM-HGDIRQ--YDIRDTAHPVLVGQIFLGGK   79 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~--------~~p~~va~SpDGr~Lyva~~~-~g~V~v--~dv~d~~~~~~~~~i~~g~~   79 (290)
                      .-.|||+...++...+   +++        ..|++++|||||++|||+|++ ++.|.+  +|..+      +.++.+++.
T Consensus        97 ~VsviD~~T~~vv~~I---~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~v~~~  167 (368)
T 1mda_H           97 YVEVFDPVTFLPIADI---ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------DQLTKSASC  167 (368)
T ss_dssp             EEEEECTTTCCEEEEE---EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------EEEEECSSC
T ss_pred             EEEEEECCCCCEEEEE---ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------ceEEECCCc
Confidence            4578899998888876   554        479999999999999999986 567888  77643      222222210


Q ss_pred             -------------ccCCCceEEecCCC-----CcC------------CC--------------Ccc-----------eee
Q psy11412         80 -------------IQSDSGVTVIDDPE-----LDK------------QP--------------DPV-----------IIK  104 (290)
Q Consensus        80 -------------~~~~~~~~v~~~~~-----~~~------------~~--------------~~~-----------~~~  104 (290)
                                   ..+.+.+.+++...     ...            .|              ...           +..
T Consensus       168 ~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~  247 (368)
T 1mda_H          168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA  247 (368)
T ss_dssp             CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC
T ss_pred             eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEE
Confidence                         01122333332211     000            00              000           000


Q ss_pred             cc--------ccCCCceE---EEEccCCCEEEEEcC-C-CCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412        105 GR--------RFTGSSQM---FQLSLDGKRIYVSSS-L-FSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus       105 ~~--------~~g~gPr~---vafsPdG~~lYv~ne-l-~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                      ..        ..+..|.+   ++|+|||++|||+++ . ....         ...+.+.   ++|....+.++.++.   
T Consensus       248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~---------~~~~~~~---ViD~~t~~vv~~i~v---  312 (368)
T 1mda_H          248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL---------AAAENTS---SVTASVGQTSGPISN---  312 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT---------SCEEEEE---EEESSSCCEEECCEE---
T ss_pred             EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc---------ccCCCEE---EEECCCCeEEEEEEC---
Confidence            00        01112333   899999999999754 1 1000         0001222   334333445554332   


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeC-CCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r-~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                             +..|.+|+|+|||++||++|+ .+|+|+|||+.   +.+.+.+|++|+
T Consensus       313 -------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~---t~kvv~~I~vg~  357 (368)
T 1mda_H          313 -------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA---SDQDQSSVELDK  357 (368)
T ss_dssp             -------EEEECEEEECCSSSCEEEEEETTTTEEEEEESS---SCEEEEECCCCS
T ss_pred             -------CCCcceEEECCCCCEEEEEccCCCCeEEEEECC---CCcEEEEEECCC
Confidence                   235788999999999999998 69999999985   478899998887

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.50  E-value=9.7e-13  Score=122.31  Aligned_cols=172  Identities=20%  Similarity=0.260  Sum_probs=113.3

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -++.|+...+.....  ..-...+..++++|||++||+++..++.|.+||+..   .+.+..+..               
T Consensus       193 v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~---------------  252 (433)
T 3bws_A          193 VHVFDLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK---------------  252 (433)
T ss_dssp             EEEEETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC---------------
T ss_pred             EEEEECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC---------------
Confidence            456666655544332  012447899999999999999998889999999864   233322211               


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                       +..+..++|+|+|+++|+++...+.+.        ..++.+..++..+   .+.+..      
T Consensus       253 -----------------~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~~dg~i~~~d~~~---~~~~~~------  298 (433)
T 3bws_A          253 -----------------IGLPRGLLLSKDGKELYIAQFSASNQE--------SGGGRLGIYSMDK---EKLIDT------  298 (433)
T ss_dssp             -----------------CSEEEEEEECTTSSEEEEEEEESCTTC--------SCCEEEEEEETTT---TEEEEE------
T ss_pred             -----------------CCCceEEEEcCCCCEEEEEECCCCccc--------cCCCeEEEEECCC---CcEEee------
Confidence                             146889999999999999864211110        0012333333221   111111      


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          +.....+..++|+|||++||+++..++.|.+||+..   .+.+..++.+.                          
T Consensus       299 ----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~--------------------------  345 (433)
T 3bws_A          299 ----IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPVFD--------------------------  345 (433)
T ss_dssp             ----EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEECSS--------------------------
T ss_pred             ----ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecCCC--------------------------
Confidence                001134678999999999999987899999999853   44555554333                          


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                            .|..++|+|||++||+++.
T Consensus       346 ------~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          346 ------KPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             ------SEEEEEECTTSSEEEEEEC
T ss_pred             ------CCCeEEEcCCCCEEEEEec
Confidence                  6899999999999999976

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.46  E-value=5.7e-13  Score=123.43  Aligned_cols=180  Identities=10%  Similarity=0.009  Sum_probs=107.9

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -++.|++..+....+   .-.+.+.+++|||||++|+++.  ++.+.+|+..+..  ........+              
T Consensus       159 i~iwd~~~~~~~~~~---~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~--~~~~~~~~~--------------  217 (365)
T 4h5i_A          159 MRIIDPSDLTEKFEI---ETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGS--CIARKTDFD--------------  217 (365)
T ss_dssp             EEEEETTTTEEEEEE---ECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCC--EEEEECCCC--------------
T ss_pred             EEEeECCCCcEEEEe---CCCCceEEEEEccCCceEEecc--ceeEEEEEeccCc--ceeeeecCC--------------
Confidence            355566655544433   2344578999999999998775  4678888875522  111111111              


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                      .....+.++|+|||+++++++.....            +..+..++...... .....   ...
T Consensus       218 ----------------~~~~v~~v~fspdg~~l~~~s~d~~~------------~~~i~~~~~~~~~~-~~~~~---~~~  265 (365)
T 4h5i_A          218 ----------------KNWSLSKINFIADDTVLIAASLKKGK------------GIVLTKISIKSGNT-SVLRS---KQV  265 (365)
T ss_dssp             ----------------TTEEEEEEEEEETTEEEEEEEESSSC------------CEEEEEEEEETTEE-EEEEE---EEE
T ss_pred             ----------------CCCCEEEEEEcCCCCEEEEEecCCcc------------eeEEeeccccccee-cceee---eee
Confidence                            01356789999999999987652110            00111122211000 00000   000


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                      .+    .......++|||||++|+++. .+++|.+||+.+   .+.+.++..|..                         
T Consensus       266 ~~----~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~---~~~~~~~~~gH~-------------------------  312 (365)
T 4h5i_A          266 TN----RFKGITSMDVDMKGELAVLAS-NDNSIALVKLKD---LSMSKIFKQAHS-------------------------  312 (365)
T ss_dssp             ES----SCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTT---TEEEEEETTSSS-------------------------
T ss_pred             cC----CCCCeEeEEECCCCCceEEEc-CCCEEEEEECCC---CcEEEEecCccc-------------------------
Confidence            00    123567899999999999888 689999999854   455555543431                         


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                           +....++|||||++|+.++.  +...|+
T Consensus       313 -----~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          313 -----FAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             -----SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             -----CCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence                 25789999999999999865  666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.44  E-value=2e-12  Score=115.85  Aligned_cols=185  Identities=13%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|+.++++....   +++..+.+..++++|.+||++++.++.+.+||..+   .++++++..+             
T Consensus        66 ~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---~~~~~ti~~~-------------  126 (262)
T 3nol_A           66 SIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---LRQVRSFNYD-------------  126 (262)
T ss_dssp             EEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT---CCEEEEEECS-------------
T ss_pred             eEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc---CcEEEEEECC-------------
Confidence            5678899999998877   67777766667778999999999999999999754   5666665443             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                           +.+..+++||++||++++ .+               .+..+|..+   .+.+.+++...
T Consensus       127 ---------------------~eG~glt~dg~~L~~SdG-s~---------------~i~~iDp~T---~~v~~~I~V~~  166 (262)
T 3nol_A          127 ---------------------GEGWGLTHNDQYLIMSDG-TP---------------VLRFLDPES---LTPVRTITVTA  166 (262)
T ss_dssp             ---------------------SCCCCEEECSSCEEECCS-SS---------------EEEEECTTT---CSEEEEEECEE
T ss_pred             ---------------------CCceEEecCCCEEEEECC-CC---------------eEEEEcCCC---CeEEEEEEecc
Confidence                                 123556689999999875 22               222222221   22222222210


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                       .+  .+ -..+.++.+. || .||+++|..+.|.++|.   .+.+.++.|.+.+..+....                  
T Consensus       167 -~g--~~-~~~lNELe~~-~G-~lyan~w~~~~I~vIDp---~tG~V~~~Id~~~L~~~~~~------------------  219 (262)
T 3nol_A          167 -HG--EE-LPELNELEWV-DG-EIFANVWQTNKIVRIDP---ETGKVTGIIDLNGILAEAGP------------------  219 (262)
T ss_dssp             -TT--EE-CCCEEEEEEE-TT-EEEEEETTSSEEEEECT---TTCBEEEEEECTTGGGGSCS------------------
T ss_pred             -CC--cc-ccccceeEEE-CC-EEEEEEccCCeEEEEEC---CCCcEEEEEECCcCcccccc------------------
Confidence             00  00 0233456655 77 69999999999998865   45788899988763211000                  


Q ss_pred             ecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI  285 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~  285 (290)
                       ....++-|+++|++|++++|||++.   .|.+.|
T Consensus       220 -~~~~~~vlNGIA~dp~~~~lfVTGK---~Wp~~~  250 (262)
T 3nol_A          220 -LPSPIDVLNGIAWDKEHHRLFVTGK---LWPKVF  250 (262)
T ss_dssp             -CCSSCCCEEEEEEETTTTEEEEEET---TCSEEE
T ss_pred             -ccCcCCceEEEEEcCCCCEEEEECC---CCCceE
Confidence             0011236899999999999999974   777765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.41  E-value=1.4e-11  Score=111.97  Aligned_cols=152  Identities=17%  Similarity=0.209  Sum_probs=101.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++++|||++|++++. +|.|++||+.+   .+.+..+...                               ....
T Consensus       165 ~~v~~~~~spdg~~lasg~~-dg~i~iwd~~~---~~~~~~~~~h-------------------------------~~~v  209 (321)
T 3ow8_A          165 KFILSIAYSPDGKYLASGAI-DGIINIFDIAT---GKLLHTLEGH-------------------------------AMPI  209 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCC
T ss_pred             ceEEEEEECCCCCEEEEEcC-CCeEEEEECCC---CcEEEEEccc-------------------------------CCce
Confidence            35788999999999998875 78999999865   3333322111                               1356


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.++|+|||++|++++.               ++ .+.+++...   ...+..     ..+    ....+..++|+|||+
T Consensus       210 ~~l~~spd~~~l~s~s~---------------dg-~i~iwd~~~---~~~~~~-----~~~----h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASD---------------DG-YIKIYDVQH---ANLAGT-----LSG----HASWVLNVAFCPDDT  261 (321)
T ss_dssp             CEEEECTTSCEEEEECT---------------TS-CEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECTTSS
T ss_pred             eEEEEcCCCCEEEEEcC---------------CC-eEEEEECCC---cceeEE-----EcC----CCCceEEEEECCCCC
Confidence            78999999999988765               22 333344321   111111     001    124577899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .+++|.+||+..   .+.+.++. +.                              .+....++|+|||++|+
T Consensus       262 ~l~s~s-~D~~v~iwd~~~---~~~~~~~~-~h------------------------------~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          262 HFVSSS-SDKSVKVWDVGT---RTCVHTFF-DH------------------------------QDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             EEEEEE-TTSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEEEEEECTTSSEEE
T ss_pred             EEEEEe-CCCcEEEEeCCC---CEEEEEEc-CC------------------------------CCcEEEEEECCCCCEEE
Confidence            999888 689999999853   34444331 11                              12578899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      ++..  ...-||
T Consensus       307 s~~~d~~i~vwd  318 (321)
T 3ow8_A          307 SVGDDQEIHIYD  318 (321)
T ss_dssp             EEETTCCEEEEE
T ss_pred             EEeCCCeEEEEe
Confidence            8865  455565

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.40  E-value=6.4e-12  Score=111.56  Aligned_cols=186  Identities=15%  Similarity=0.214  Sum_probs=122.1

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.++|+.++++....   +++..+.+..++++|.+||+.++.++.+.+||..+   .++++++..+             
T Consensus        44 ~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t---l~~~~ti~~~-------------  104 (243)
T 3mbr_X           44 SVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT---LTPRARFRYP-------------  104 (243)
T ss_dssp             EEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT---TEEEEEEECS-------------
T ss_pred             eEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc---CcEEEEEeCC-------------
Confidence            5678999999998877   78887877777778999999999999999999754   6777766543             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                         .  .+..+++||++||+++. .+.               +..+|..+   .+.+++++...
T Consensus       105 -------------------~--~Gwglt~dg~~L~vSdg-s~~---------------l~~iDp~t---~~~~~~I~V~~  144 (243)
T 3mbr_X          105 -------------------G--EGWALTSDDSHLYMSDG-TAV---------------IRKLDPDT---LQQVGSIKVTA  144 (243)
T ss_dssp             -------------------S--CCCEEEECSSCEEEECS-SSE---------------EEEECTTT---CCEEEEEECEE
T ss_pred             -------------------C--CceEEeeCCCEEEEECC-CCe---------------EEEEeCCC---CeEEEEEEEcc
Confidence                               1  22455689999999885 222               22222222   12222222110


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                       .+  .+. ....++... || .||+.+|.++.|.++|.   .+.+.++.+.+++..+....+                 
T Consensus       145 -~g--~~~-~~lNeLe~~-~G-~lyanvw~s~~I~vIDp---~tG~V~~~idl~~l~~~~~~~-----------------  198 (243)
T 3mbr_X          145 -GG--RPL-DNLNELEWV-NG-ELLANVWLTSRIARIDP---ASGKVVAWIDLQALVPDADAL-----------------  198 (243)
T ss_dssp             -TT--EEC-CCEEEEEEE-TT-EEEEEETTTTEEEEECT---TTCBEEEEEECGGGSTTTTSC-----------------
T ss_pred             -CC--ccc-ccceeeEEe-CC-EEEEEECCCCeEEEEEC---CCCCEEEEEECCcCccccccc-----------------
Confidence             00  000 123344433 56 59999999999998865   457889999987632111000                 


Q ss_pred             ecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412        251 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI  285 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~  285 (290)
                       +...++-|++||++|++++|||++   +.|.+.|
T Consensus       199 -~~~~~~vlNGIA~d~~~~~lfVTG---K~wp~~~  229 (243)
T 3mbr_X          199 -TDSTNDVLNGIAFDAEHDRLFVTG---KRWPMLY  229 (243)
T ss_dssp             -CCTTSSCEEEEEEETTTTEEEEEE---TTCSEEE
T ss_pred             -cCCcCCceEEEEEcCCCCEEEEEC---CCCCcEE
Confidence             001123689999999999999996   4777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.39  E-value=1.3e-11  Score=108.82  Aligned_cols=148  Identities=11%  Similarity=0.161  Sum_probs=97.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|+++++++++++||+++...+.|.+++... .....+   ...+                              ...|+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~---~~~~------------------------------~~~p~   82 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTI---IRQD------------------------------LGSPE   82 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEE---ECTT------------------------------CCCEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEE---EECC------------------------------CCCcc
Confidence            6899999999999999999999999999853 222111   0000                              15899


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++++|+++.||+++...+.+.++..     ++...           ..+.  +         .....|.+|+++|++++
T Consensus        83 ~ia~d~~~~~lyv~d~~~~~I~~~~~-----~g~~~-----------~~~~--~---------~~~~~P~~i~vd~~~g~  135 (267)
T 1npe_A           83 GIALDHLGRTIFWTDSQLDRIEVAKM-----DGTQR-----------RVLF--D---------TGLVNPRGIVTDPVRGN  135 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE--C---------SSCSSEEEEEEETTTTE
T ss_pred             EEEEEecCCeEEEEECCCCEEEEEEc-----CCCCE-----------EEEE--E---------CCCCCccEEEEeeCCCE
Confidence            99999999999999874332222111     11000           0000  0         01146789999999999


Q ss_pred             EEEEeCC--CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        194 LYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       194 Lyvs~r~--~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ||+++++  .+.|.+++++ ....+.+.   ..+                              ...|++++++|||++|
T Consensus       136 lyv~~~~~~~~~I~~~~~d-g~~~~~~~---~~~------------------------------~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          136 LYWTDWNRDNPKIETSHMD-GTNRRILA---QDN------------------------------LGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             EEEEECCSSSCEEEEEETT-SCCCEEEE---CTT------------------------------CSCEEEEEEETTTTEE
T ss_pred             EEEEECCCCCcEEEEEecC-CCCcEEEE---ECC------------------------------CCCCcEEEEcCCCCEE
Confidence            9999977  5788888873 22222211   011                              0269999999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      |+++.
T Consensus       182 yv~d~  186 (267)
T 1npe_A          182 CWVDA  186 (267)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99986

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.39  E-value=2.1e-12  Score=116.04  Aligned_cols=189  Identities=13%  Similarity=0.147  Sum_probs=121.2

Q ss_pred             CCceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412          6 DGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG   85 (290)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~   85 (290)
                      .|.+..-.++|+.++++....    ++..+.+..++++|++||++++.++.+.+||..+   .++++++..+        
T Consensus        71 tG~~g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T---l~~~~ti~~~--------  135 (268)
T 3nok_A           71 TGHQGTLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP---PQRERTTRYS--------  135 (268)
T ss_dssp             ETTTTEEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTT---TEEEEEEECS--------
T ss_pred             cCCCCEEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCc---CcEEEEEeCC--------
Confidence            355555788999999988764    5555555556678999999999999999999754   6777666443        


Q ss_pred             eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412         86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                                +.+..+++||++||+++. .+.               +..+|..+   .+.+++
T Consensus       136 --------------------------~eGwGLt~Dg~~L~vSdG-s~~---------------l~~iDp~T---~~v~~~  170 (268)
T 3nok_A          136 --------------------------GEGWGLCYWNGKLVRSDG-GTM---------------LTFHEPDG---FALVGA  170 (268)
T ss_dssp             --------------------------SCCCCEEEETTEEEEECS-SSE---------------EEEECTTT---CCEEEE
T ss_pred             --------------------------CceeEEecCCCEEEEECC-CCE---------------EEEEcCCC---CeEEEE
Confidence                                      122455689999999875 222               22222221   122222


Q ss_pred             cCccccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCC
Q psy11412        166 MPLSSLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ  244 (290)
Q Consensus       166 ~p~~~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~  244 (290)
                      ++... .+    .+ ....++.+. || .||+++|..+.|.++|.   .+.+.++.|.+++..+...+           .
T Consensus       171 I~V~~-~g----~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp---~TG~V~~~Idl~~L~~~~~~-----------~  229 (268)
T 3nok_A          171 VQVKL-RG----QPVELINELECA-NG-VIYANIWHSSDVLEIDP---ATGTVVGVIDASALTRAVAG-----------Q  229 (268)
T ss_dssp             EECEE-TT----EECCCEEEEEEE-TT-EEEEEETTCSEEEEECT---TTCBEEEEEECHHHHHHHTT-----------T
T ss_pred             EEeCC-CC----cccccccccEEe-CC-EEEEEECCCCeEEEEeC---CCCcEEEEEECCCCcccccc-----------c
Confidence            22110 00    01 234556655 78 69999999999998865   45788899988752110000           0


Q ss_pred             CCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412        245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI  285 (290)
Q Consensus       245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~  285 (290)
                             ....++-|++||++|++++|||++   +.|.+.|
T Consensus       230 -------~~~~~~vlNGIA~dp~~~rlfVTG---K~Wp~~~  260 (268)
T 3nok_A          230 -------VTNPEAVLNGIAVEPGSGRIFMTG---KLWPRLF  260 (268)
T ss_dssp             -------CCCTTCCEEEEEECTTTCCEEEEE---TTCSEEE
T ss_pred             -------ccCcCCceEEEEEcCCCCEEEEeC---CCCCceE
Confidence                   001123689999999999999986   4777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.39  E-value=2.3e-12  Score=115.43  Aligned_cols=159  Identities=13%  Similarity=0.135  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412         36 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  115 (290)
Q Consensus        36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v  115 (290)
                      .+++++++++. |+++..+++|.+||+.+   .+.+..+..+.                              ...|+++
T Consensus         3 ~g~~~~~~~~~-~v~~~~~~~v~~~d~~~---~~~~~~~~~~~------------------------------~~~~~~~   48 (349)
T 1jmx_B            3 TGPALKAGHEY-MIVTNYPNNLHVVDVAS---DTVYKSCVMPD------------------------------KFGPGTA   48 (349)
T ss_dssp             -CCCCCTTCEE-EEEEETTTEEEEEETTT---TEEEEEEECSS------------------------------CCSSCEE
T ss_pred             ccccccCCCEE-EEEeCCCCeEEEEECCC---CcEEEEEecCC------------------------------CCCCcee
Confidence            34567776654 55655689999999864   34444443320                              0268899


Q ss_pred             EEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEE
Q psy11412        116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLY  195 (290)
Q Consensus       116 afsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Ly  195 (290)
                      +|+|||+++|+++...+               .+..++..+   .+.+..+.......   ..+..+.+++|||||++||
T Consensus        49 ~~s~dg~~~~v~~~~~~---------------~i~~~d~~t---~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~  107 (349)
T 1jmx_B           49 MMAPDNRTAYVLNNHYG---------------DIYGIDLDT---CKNTFHANLSSVPG---EVGRSMYSFAISPDGKEVY  107 (349)
T ss_dssp             EECTTSSEEEEEETTTT---------------EEEEEETTT---TEEEEEEESCCSTT---EEEECSSCEEECTTSSEEE
T ss_pred             EECCCCCEEEEEeCCCC---------------cEEEEeCCC---CcEEEEEEcccccc---cccccccceEECCCCCEEE
Confidence            99999999999875222               222222211   11111111000000   0012356799999999999


Q ss_pred             EEeCC-----------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        196 TSNWM-----------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       196 vs~r~-----------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      +++..           .+.|.+||+......+.+.....                                ...+..++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~  155 (349)
T 1jmx_B          108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--------------------------------PRQVYLMRA  155 (349)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--------------------------------CSSCCCEEE
T ss_pred             EEcccccccccccccCCCeEEEEECCCccccceeeeccC--------------------------------CCcccceeE
Confidence            99844           57999999853111111111111                                015778999


Q ss_pred             ccCCCEEEEEcCCCCCCC
Q psy11412        265 SLDGKRIYVSSSLFSPWD  282 (290)
Q Consensus       265 sPDG~~L~Van~~~~~~~  282 (290)
                      +|||+ ||+++..+..||
T Consensus       156 s~dg~-l~~~~~~i~~~d  172 (349)
T 1jmx_B          156 ADDGS-LYVAGPDIYKMD  172 (349)
T ss_dssp             CTTSC-EEEESSSEEEEC
T ss_pred             CCCCc-EEEccCcEEEEe
Confidence            99999 888766444444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.37  E-value=1.7e-11  Score=113.44  Aligned_cols=159  Identities=12%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             CceEEEEEcCCCCEEEEEeC-CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~-~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .++..++|||||++|+++.. .+++|++||+.+   .+.+..+..+                                ..
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---~~~~~~~~~~--------------------------------~~  178 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---LTEKFEIETR--------------------------------GE  178 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---TEEEEEEECS--------------------------------SC
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---CcEEEEeCCC--------------------------------Cc
Confidence            46788999999999987653 478999999865   3344333221                                35


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +..++|||||++|+.++.                + .+..++..+   .+.+....   .    .........++|||||
T Consensus       179 V~~v~fspdg~~l~s~s~----------------~-~~~~~~~~~---~~~~~~~~---~----~~~~~~v~~v~fspdg  231 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYITG----------------S-SLEVISTVT---GSCIARKT---D----FDKNWSLSKINFIADD  231 (365)
T ss_dssp             CCEEEECTTSSEEEEECS----------------S-CEEEEETTT---CCEEEEEC---C----CCTTEEEEEEEEEETT
T ss_pred             eEEEEEccCCceEEeccc----------------e-eEEEEEecc---Ccceeeee---c----CCCCCCEEEEEEcCCC
Confidence            778999999999988654                1 111122111   00010000   0    0012356789999999


Q ss_pred             CEEEEEeCCCC---cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        192 RYLYTSNWMHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       192 r~Lyvs~r~~~---~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      ++|+++....+   .+..|++... ...........+.                             ......++|||||
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-----------------------------~~~V~~~~~Spdg  281 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSG-NTSVLRSKQVTNR-----------------------------FKGITSMDVDMKG  281 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETT-EEEEEEEEEEESS-----------------------------CSCEEEEEECTTS
T ss_pred             CEEEEEecCCcceeEEeecccccc-eecceeeeeecCC-----------------------------CCCeEeEEECCCC
Confidence            99998763322   5777877432 1111111111110                             0146889999999


Q ss_pred             CEEEEEcC--CCCCCCc
Q psy11412        269 KRIYVSSS--LFSPWDK  283 (290)
Q Consensus       269 ~~L~Van~--~~~~~~~  283 (290)
                      ++|++++.  ...-||-
T Consensus       282 ~~lasgs~D~~V~iwd~  298 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKL  298 (365)
T ss_dssp             CEEEEEETTSCEEEEET
T ss_pred             CceEEEcCCCEEEEEEC
Confidence            99999866  5555653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.36  E-value=4.5e-11  Score=110.15  Aligned_cols=187  Identities=10%  Similarity=0.059  Sum_probs=110.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+||++ |+++. .+|+|++||+.+............++                              ....
T Consensus        83 ~~v~~~~~s~d~~-l~~~s-~dg~v~lWd~~~~~~~~~~~~~~~~H------------------------------~~~V  130 (344)
T 4gqb_B           83 AGVADLTWVGERG-ILVAS-DSGAVELWELDENETLIVSKFCKYEH------------------------------DDIV  130 (344)
T ss_dssp             SCEEEEEEETTTE-EEEEE-TTSEEEEEEECTTSSCEEEEEEEECC------------------------------SSCE
T ss_pred             CCEEEEEEeCCCe-EEEEE-CCCEEEEEeccCCCceeEeeccccCC------------------------------CCCE
Confidence            3578999999975 55555 48999999997644333332222221                              1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|||++|+..+.               ++ .+.++++..   .+.+..+.     +    ....+..++|+|||+
T Consensus       131 ~~v~~spdg~~l~sgs~---------------d~-~i~iwd~~~---~~~~~~~~-----~----h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          131 STVSVLSSGTQAVSGSK---------------DI-CIKVWDLAQ---QVVLSSYR-----A----HAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEECSSCT
T ss_pred             EEEEECCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEc-----C----cCCceEEEEecCCCC
Confidence            88999999999998765               22 343344322   12222110     1    124577899999997


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEe---------eEE---eeCcee----cCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLV---------GQI---FLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v---------~~i---~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                      .++++.-.+++|.+||+........+         ..+   +.++.+    ..|++|++||.....  +. ..+.+..  
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--~~-~~~~~h~--  257 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--CV-LSSAVHS--  257 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CC-EEEECCS--
T ss_pred             CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--EE-EEEcCCC--
Confidence            65554437899999999643221111         111   112221    467889999875421  11 1233322  


Q ss_pred             CCcceEEEccCCC-EEEEEcC--CCCCCCcc
Q psy11412        257 GSSQMFQLSLDGK-RIYVSSS--LFSPWDKE  284 (290)
Q Consensus       257 ~~P~~~a~sPDG~-~L~Van~--~~~~~~~~  284 (290)
                      +....++|+|||+ +|+.++.  .+.-||..
T Consensus       258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             CCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            3578999999996 4665543  56667643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.36  E-value=3.2e-11  Score=108.57  Aligned_cols=146  Identities=12%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             ceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .|++++++||| +||+++.  ++++|+++|...   .+++..+.++                                ..
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---g~v~~~i~l~--------------------------------~~   65 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---GKVENIHKMD--------------------------------DS   65 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---CCEEEEEECC--------------------------------TT
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---CCEEEEEecC--------------------------------CC
Confidence            68999999995 8999973  478999999864   4555555543                                23


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +....+.++|++||++++..+               .+.++|..+   .+.+.+++.          + .+.++.+++||
T Consensus        66 ~fgeGi~~~g~~lyv~t~~~~---------------~v~viD~~t---~~v~~~i~~----------g-~~~g~glt~Dg  116 (266)
T 2iwa_A           66 YFGEGLTLLNEKLYQVVWLKN---------------IGFIYDRRT---LSNIKNFTH----------Q-MKDGWGLATDG  116 (266)
T ss_dssp             CCEEEEEEETTEEEEEETTCS---------------EEEEEETTT---TEEEEEEEC----------C-SSSCCEEEECS
T ss_pred             cceEEEEEeCCEEEEEEecCC---------------EEEEEECCC---CcEEEEEEC----------C-CCCeEEEEECC
Confidence            333344456889999987332               333333322   223333222          1 12336689999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ++||+|+ ++++|+++|.   ++.+.+.++++|..                ..|.          ..|+.+.+. || +|
T Consensus       117 ~~l~vs~-gs~~l~viD~---~t~~v~~~I~Vg~~----------------~~p~----------~~~nele~~-dg-~l  164 (266)
T 2iwa_A          117 KILYGSD-GTSILYEIDP---HTFKLIKKHNVKYN----------------GHRV----------IRLNELEYI-NG-EV  164 (266)
T ss_dssp             SSEEEEC-SSSEEEEECT---TTCCEEEEEECEET----------------TEEC----------CCEEEEEEE-TT-EE
T ss_pred             CEEEEEC-CCCeEEEEEC---CCCcEEEEEEECCC----------------Cccc----------ccceeEEEE-CC-EE
Confidence            9999999 8999999865   35678888888751                0011          158889998 66 89


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ||++.
T Consensus       165 yvn~~  169 (266)
T 2iwa_A          165 WANIW  169 (266)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            98864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.35  E-value=3.3e-11  Score=110.12  Aligned_cols=159  Identities=9%  Similarity=-0.029  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....++|||||++|++++. +++|++||+... .......+..++                              ....+
T Consensus        18 ~v~~l~~sp~g~~las~~~-D~~i~iw~~~~~-~~~~~~~~~~~h------------------------------~~~v~   65 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGG-DRRIRIWGTEGD-SWICKSVLSEGH------------------------------QRTVR   65 (345)
T ss_dssp             CEEEEEECTTSSCEEEEET-TSCEEEEEEETT-EEEEEEEECSSC------------------------------SSCEE
T ss_pred             cEEEEEECCCCCEEEEEcC-CCeEEEEEcCCC-cceeeeeecccc------------------------------CCcEE
Confidence            4678999999999988775 899999998652 111111111111                              14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|||||++|+.++.               ++ .+.+++..... ...+..     ..+    ....+..++|+|||++
T Consensus        66 ~~~~sp~g~~l~s~s~---------------D~-~v~iw~~~~~~-~~~~~~-----~~~----h~~~v~~v~~sp~~~~  119 (345)
T 3fm0_A           66 KVAWSPCGNYLASASF---------------DA-TTCIWKKNQDD-FECVTT-----LEG----HENEVKSVAWAPSGNL  119 (345)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CEEEEEECCC--EEEEEE-----ECC----CSSCEEEEEECTTSSE
T ss_pred             EEEECCCCCEEEEEEC---------------CC-cEEEEEccCCC-eEEEEE-----ccC----CCCCceEEEEeCCCCE
Confidence            8999999999998765               22 23334332100 000111     011    1245788999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .+++|.+||+........+..+. +.                              .+....++|+|+|++|++
T Consensus       120 l~s~s-~D~~v~iwd~~~~~~~~~~~~~~-~h------------------------------~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A          120 LATCS-RDKSVWVWEVDEEDEYECVSVLN-SH------------------------------TQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             EEEEE-TTSCEEEEEECTTSCEEEEEEEC-CC------------------------------CSCEEEEEECSSSSCEEE
T ss_pred             EEEEE-CCCeEEEEECCCCCCeEEEEEec-Cc------------------------------CCCeEEEEECCCCCEEEE
Confidence            99888 68999999996533222222221 11                              014688999999999998


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      ++.  ...-|+
T Consensus       168 ~s~d~~i~~w~  178 (345)
T 3fm0_A          168 ASYDDTVKLYR  178 (345)
T ss_dssp             EETTSCEEEEE
T ss_pred             EeCCCcEEEEE
Confidence            865  444454

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.34  E-value=1.7e-11  Score=120.81  Aligned_cols=160  Identities=11%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|||||++|++++. +++|++||+... ....+..  .++                              ...+
T Consensus       449 ~~v~~va~spdg~~lasgs~-D~~v~lwd~~~~-~~~~~~~--~~h------------------------------~~~v  494 (611)
T 1nr0_A          449 YNSSCVALSNDKQFVAVGGQ-DSKVHVYKLSGA-SVSEVKT--IVH------------------------------PAEI  494 (611)
T ss_dssp             SCEEEEEECTTSCEEEEEET-TSEEEEEEEETT-EEEEEEE--EEC------------------------------SSCE
T ss_pred             CCceEEEEeCCCCEEEEeCC-CCeEEEEEccCC-ceeeeec--cCC------------------------------CCce
Confidence            35678999999999998875 889999998642 2222221  111                              1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDG  191 (290)
                      ..++|||||++|++++.               ++ .+..+++.+   ...+....     .  +. ....+..++|||||
T Consensus       495 ~~v~fspdg~~las~s~---------------d~-~v~~w~~~~---~~~~~~~~-----~--~~~H~~~V~~v~fspdg  548 (611)
T 1nr0_A          495 TSVAFSNNGAFLVATDQ---------------SR-KVIPYSVAN---NFELAHTN-----S--WTFHTAKVACVSWSPDN  548 (611)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEEGGG---TTEESCCC-----C--CCCCSSCEEEEEECTTS
T ss_pred             EEEEECCCCCEEEEEcC---------------CC-CEEEEEcCC---CCceeeee-----e--eeecccceeEEEECCCC
Confidence            88999999999998765               22 333344321   01111000     0  01 12467889999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ++|+++. .+++|.+||+..+.... +. +..|..                             .+....++|+|||+ |
T Consensus       549 ~~lasgs-~D~~v~lW~~~~~~~~~-~~-~~~~h~-----------------------------~~~v~~v~fs~d~~-l  595 (611)
T 1nr0_A          549 VRLATGS-LDNSVIVWNMNKPSDHP-II-IKGAHA-----------------------------MSSVNSVIWLNETT-I  595 (611)
T ss_dssp             SEEEEEE-TTSCEEEEETTCTTSCC-EE-ETTSST-----------------------------TSCEEEEEEEETTE-E
T ss_pred             CEEEEEE-CCCcEEEEECCCccccc-ch-hhccCc-----------------------------ccCeeEEEEcCCCE-E
Confidence            9999888 68999999996532211 01 111110                             02578899999999 7


Q ss_pred             EEEcC--CCCCCCccc
Q psy11412        272 YVSSS--LFSPWDKEI  285 (290)
Q Consensus       272 ~Van~--~~~~~~~~~  285 (290)
                      +.+..  .+.-|+-.|
T Consensus       596 ~s~~~D~~i~lW~~~~  611 (611)
T 1nr0_A          596 VSAGQDSNIKFWNVPF  611 (611)
T ss_dssp             EEEETTSCEEEEECCC
T ss_pred             EEecCCCCEEEEeccC
Confidence            77754  666776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.32  E-value=1.3e-10  Score=103.00  Aligned_cols=162  Identities=15%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -.+.|+...+.....  ..-...+..++++|||++|++++. +|.|.+||+...   +.+.....               
T Consensus       165 v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~---~~~~~~~~---------------  223 (337)
T 1gxr_A          165 IAVWDLHNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREG---RQLQQHDF---------------  223 (337)
T ss_dssp             EEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEEEC---------------
T ss_pred             EEEEeCCCCceeeee--ecccCceEEEEECCCCCEEEEEec-CCcEEEEECCCC---ceEeeecC---------------
Confidence            345666655443332  012346889999999999998875 889999998652   33322211               


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                       ...+..++|+|+|+++++.++               ++ .+..++...   .....      .
T Consensus       224 -----------------~~~v~~~~~s~~~~~l~~~~~---------------~~-~i~~~~~~~---~~~~~------~  261 (337)
T 1gxr_A          224 -----------------TSQIFSLGYCPTGEWLAVGME---------------SS-NVEVLHVNK---PDKYQ------L  261 (337)
T ss_dssp             -----------------SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEETTS---SCEEE------E
T ss_pred             -----------------CCceEEEEECCCCCEEEEEcC---------------CC-cEEEEECCC---CCeEE------E
Confidence                             145788999999999998765               12 232233221   11100      0


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          ......+..++|+|||++|+++. .++.|.+||+...   +.+......                           
T Consensus       262 ----~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~---~~~~~~~~~---------------------------  306 (337)
T 1gxr_A          262 ----HLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYG---ASIFQSKES---------------------------  306 (337)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECS---------------------------
T ss_pred             ----cCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCC---eEEEEecCC---------------------------
Confidence                00124577899999999999888 6899999998542   222221111                           


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                           +.+..++|+|||++|++++.
T Consensus       307 -----~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          307 -----SSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             -----SCEEEEEECTTSCEEEEEET
T ss_pred             -----CcEEEEEECCCCCEEEEecC
Confidence                 25788999999999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.32  E-value=7.1e-11  Score=107.91  Aligned_cols=159  Identities=13%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+|||++|++++. +++|.+|++... ..+.+..+. ++                              ....
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~-D~~v~iw~~~~~-~~~~~~~~~-~h------------------------------~~~v  108 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASF-DATTCIWKKNQD-DFECVTTLE-GH------------------------------ENEV  108 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSCEEEEEECCC--EEEEEEEC-CC------------------------------SSCE
T ss_pred             CcEEEEEECCCCCEEEEEEC-CCcEEEEEccCC-CeEEEEEcc-CC------------------------------CCCc
Confidence            35789999999999998875 889999998642 223332221 11                              1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|+|++|+.++.               ++ .+.++++........+..     ..+    .......++++|||+
T Consensus       109 ~~v~~sp~~~~l~s~s~---------------D~-~v~iwd~~~~~~~~~~~~-----~~~----h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A          109 KSVAWAPSGNLLATCSR---------------DK-SVWVWEVDEEDEYECVSV-----LNS----HTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEEECTTSCEEEEEE-----ECC----CCSCEEEEEECSSSS
T ss_pred             eEEEEeCCCCEEEEEEC---------------CC-eEEEEECCCCCCeEEEEE-----ecC----cCCCeEEEEECCCCC
Confidence            88999999999998765               22 333344322000000110     000    123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .+++|.+||+... ....+..+ .|.                              .+....++|+|||++|+
T Consensus       164 ~l~s~s-~d~~i~~w~~~~~-~~~~~~~~-~~h------------------------------~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          164 LLASAS-YDDTVKLYREEED-DWVCCATL-EGH------------------------------ESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             CEEEEE-TTSCEEEEEEETT-EEEEEEEE-CCC------------------------------SSCEEEEEECTTSSEEE
T ss_pred             EEEEEe-CCCcEEEEEecCC-CEEEEEEe-cCC------------------------------CCceEEEEECCCCCEEE
Confidence            999888 6889999998531 11112221 111                              12578899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      ++..  ...-|+
T Consensus       211 s~s~D~~v~iW~  222 (345)
T 3fm0_A          211 SCSDDRTVRIWR  222 (345)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEeCCCeEEEec
Confidence            9865  556665

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.31  E-value=1.1e-10  Score=105.90  Aligned_cols=152  Identities=18%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++++|++.+++++.. +++|++||+.+   .+.+..+..+                               .....
T Consensus        82 ~v~~~~~~~~~~~l~s~s~-D~~i~lWd~~~---~~~~~~~~~~-------------------------------~~~~~  126 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSL-DAHIRLWDLEN---GKQIKSIDAG-------------------------------PVDAW  126 (321)
T ss_dssp             CEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------TTCCC
T ss_pred             CEEEEEECCCCCEEEEEeC-CCcEEEEECCC---CCEEEEEeCC-------------------------------CccEE
Confidence            5788999999999988775 89999999965   3333333222                               02456


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|||++|++.+.               ++ .+.+++...   ......+.         ........++|||||++
T Consensus       127 ~~~~spdg~~l~~g~~---------------dg-~v~i~~~~~---~~~~~~~~---------~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          127 TLAFSPDSQYLATGTH---------------VG-KVNIFGVES---GKKEYSLD---------TRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             CEEECTTSSEEEEECT---------------TS-EEEEEETTT---CSEEEEEE---------CSSSCEEEEEECTTSSE
T ss_pred             EEEECCCCCEEEEEcC---------------CC-cEEEEEcCC---CceeEEec---------CCCceEEEEEECCCCCE
Confidence            6999999999998654               12 232233211   11111000         01235678999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+..   .+.+..+. +.                              ....+.++|+|||++|++
T Consensus       179 lasg~-~dg~i~iwd~~~---~~~~~~~~-~h------------------------------~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          179 LASGA-IDGIINIFDIAT---GKLLHTLE-GH------------------------------AMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             EEEEE-TTSCEEEEETTT---TEEEEEEC-CC------------------------------SSCCCEEEECTTSCEEEE
T ss_pred             EEEEc-CCCeEEEEECCC---CcEEEEEc-cc------------------------------CCceeEEEEcCCCCEEEE
Confidence            99888 689999999853   34444332 11                              014688999999999999


Q ss_pred             EcC--CCCCCCc
Q psy11412        274 SSS--LFSPWDK  283 (290)
Q Consensus       274 an~--~~~~~~~  283 (290)
                      ++.  .+.-||-
T Consensus       224 ~s~dg~i~iwd~  235 (321)
T 3ow8_A          224 ASDDGYIKIYDV  235 (321)
T ss_dssp             ECTTSCEEEEET
T ss_pred             EcCCCeEEEEEC
Confidence            875  4555653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.31  E-value=1e-10  Score=104.76  Aligned_cols=152  Identities=11%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+++|+|||++|+++.. +|+|++||+..   ...+..+...                               ....+
T Consensus        15 ~V~~~~fsp~~~~l~s~~~-dg~v~lWd~~~---~~~~~~~~~~-------------------------------~~~v~   59 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLY-SGRVELWNYET---QVEVRSIQVT-------------------------------ETPVR   59 (304)
T ss_dssp             CEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------SSCEE
T ss_pred             ceEEEEECCCCCEEEEEcC-CCcEEEEECCC---CceeEEeecc-------------------------------CCcEE
Confidence            5789999999999998875 89999999865   2333332221                               13567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               + +.+.+++...   .+.+..+     .+    .......|+|+|||++
T Consensus        60 ~~~~~~~~~~l~s~s~---------------d-~~i~vwd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~~  111 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSD---------------D-FRIRVFNYNT---GEKVVDF-----EA----HPDYIRSIAVHPTKPY  111 (304)
T ss_dssp             EEEEEGGGTEEEEEET---------------T-SEEEEEETTT---CCEEEEE-----EC----CSSCEEEEEECSSSSE
T ss_pred             EEEEeCCCCEEEEECC---------------C-CEEEEEECCC---CcEEEEE-----eC----CCCcEEEEEEcCCCCE
Confidence            8999999999998765               2 2333344322   1111110     01    1245778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRIY  272 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L~  272 (290)
                      |+++. .+++|.+||+...  ......+ .+..                              +....++|+| |+++|+
T Consensus       112 l~sgs-~D~~v~lWd~~~~--~~~~~~~-~~h~------------------------------~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A          112 VLSGS-DDLTVKLWNWENN--WALEQTF-EGHE------------------------------HFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEEE-TTSCEEEEEGGGT--TEEEEEE-CCCC------------------------------SCEEEEEECTTCTTEEE
T ss_pred             EEEEC-CCCeEEEEECCCC--cchhhhh-cccC------------------------------CcEEEEEECCCCCCEEE
Confidence            99888 6899999999642  1222211 1220                              1467889998 677887


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      +++.  ...-||
T Consensus       158 sgs~D~~v~iwd  169 (304)
T 2ynn_A          158 SGCLDRTVKVWS  169 (304)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCeEEEEE
Confidence            7754  444554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.30  E-value=1.9e-10  Score=101.30  Aligned_cols=119  Identities=6%  Similarity=-0.043  Sum_probs=80.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|++++++|++++||+++...+.|.+++.+. ...+.+.  ..+                               ...|
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~--~~~-------------------------------~~~P  124 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRRVLF--DTG-------------------------------LVNP  124 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE--CSS-------------------------------CSSE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEEEEE--ECC-------------------------------CCCc
Confidence            48999999999999999999999999999853 2222110  000                               1579


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++++++|++++||+++....             ...+..++. +....+.+..           .....|.+|+++|||+
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~-------------~~~I~~~~~-dg~~~~~~~~-----------~~~~~P~gia~d~~~~  179 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRD-------------NPKIETSHM-DGTNRRILAQ-----------DNLGLPNGLTFDAFSS  179 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSS-------------SCEEEEEET-TSCCCEEEEC-----------TTCSCEEEEEEETTTT
T ss_pred             cEEEEeeCCCEEEEEECCCC-------------CcEEEEEec-CCCCcEEEEE-----------CCCCCCcEEEEcCCCC
Confidence            99999999999999986310             111111111 0000000100           0114688999999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +||+++++.+.|.++|..
T Consensus       180 ~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          180 QLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEecC
Confidence            999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.29  E-value=6.6e-10  Score=98.44  Aligned_cols=148  Identities=14%  Similarity=0.173  Sum_probs=98.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..++++|||++|++++. +|.|.+||+... .......+...                               ...
T Consensus        97 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~~~~~-------------------------------~~~  143 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTLIVGGE-ASTLSIWDLAAP-TPRIKAELTSS-------------------------------APA  143 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEES-SSEEEEEECCCC---EEEEEEECS-------------------------------SSC
T ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCcEEEEECCCC-CcceeeecccC-------------------------------CCc
Confidence            346889999999999998875 789999999763 22222221111                               135


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|+|+++++++.++               ++ .+..++...   .+.+..+.     .    .......++++|||
T Consensus       144 i~~~~~~~~~~~l~~~~~---------------dg-~v~~~d~~~---~~~~~~~~-----~----~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCS---------------DG-NIAVWDLHN---QTLVRQFQ-----G----HTDGASCIDISNDG  195 (337)
T ss_dssp             EEEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEECTTS
T ss_pred             eEEEEECCCCCEEEEEeC---------------CC-cEEEEeCCC---Cceeeeee-----c----ccCceEEEEECCCC
Confidence            678999999999998765               12 233333321   11111110     0    12356789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ++|+++. .++.|.+||+..   .+.+..+...+                                .+..++|+|||++|
T Consensus       196 ~~l~~~~-~dg~i~~~d~~~---~~~~~~~~~~~--------------------------------~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          196 TKLWTGG-LDNTVRSWDLRE---GRQLQQHDFTS--------------------------------QIFSLGYCPTGEWL  239 (337)
T ss_dssp             SEEEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEEEEEECTTSSEE
T ss_pred             CEEEEEe-cCCcEEEEECCC---CceEeeecCCC--------------------------------ceEEEEECCCCCEE
Confidence            9999988 688999999854   34444333222                                57889999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ++++.
T Consensus       240 ~~~~~  244 (337)
T 1gxr_A          240 AVGME  244 (337)
T ss_dssp             EEEET
T ss_pred             EEEcC
Confidence            99864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.28  E-value=1e-10  Score=112.68  Aligned_cols=149  Identities=17%  Similarity=0.223  Sum_probs=98.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|+||+++|+++.. +++|.+||...    +.+..+. ++                              ...+
T Consensus       427 ~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~~~----~~~~~~~-~~------------------------------~~~v  470 (577)
T 2ymu_A          427 SSVWGVAFSPDDQTIASASD-DKTVKLWNRNG----QLLQTLT-GH------------------------------SSSV  470 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEEEETTS----CEEEEEE-CC------------------------------SSCE
T ss_pred             CCeEEEEECCCCCEEEEEcC-CCEEEEEECCC----CEEEEEc-CC------------------------------CCCE
Confidence            35778999999999988775 88999999742    2222221 11                              1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|||++|++++.               + +.+.+++..    .+.+..+.     +    ....+..|+|||||+
T Consensus       471 ~~~~~spd~~~las~~~---------------d-~~i~iw~~~----~~~~~~~~-----~----h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          471 RGVAFSPDGQTIASASD---------------D-KTVKLWNRN----GQLLQTLT-----G----HSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             EEEEECTTSCEEEEEET---------------T-SEEEEEETT----SCEEEEEE-----C----CSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCEEEEEeC---------------C-CEEEEEcCC----CCEEEEEe-----C----CCCCEEEEEEcCCCC
Confidence            88999999999998765               1 233333321    11111100     1    124577899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||..    .+.+..+. |.                              .+....++|+|||++|+
T Consensus       522 ~l~s~~-~dg~v~lwd~~----~~~~~~~~-~h------------------------------~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          522 TIASAS-DDKTVKLWNRN----GQLLQTLT-GH------------------------------SSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             CEEEEE-TTSEEEEECTT----SCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred             EEEEEE-CcCEEEEEeCC----CCEEEEEc-CC------------------------------CCCEEEEEEcCCCCEEE
Confidence            999888 68899999963    23343332 22                              12578899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      ++..  .+..||
T Consensus       566 s~~~D~~i~~Wd  577 (577)
T 2ymu_A          566 SASSDKTVKLWN  577 (577)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEeCCCEEEEeC
Confidence            8864  444453

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.28  E-value=1.9e-10  Score=104.64  Aligned_cols=148  Identities=13%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+..++++|||++|++++. +++|++||+...   ..+..+. ++                              ...+
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~-d~~v~~wd~~~~---~~~~~~~-~h------------------------------~~~v  229 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGAC-DASAKLWDVREG---MCRQTFT-GH------------------------------ESDI  229 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSCEEEEETTTC---SEEEEEC-CC------------------------------SSCE
T ss_pred             CceEEEEECCCCCEEEEEeC-CCcEEEEECCCC---eeEEEEc-CC------------------------------cCCE
Confidence            35789999999999987775 899999999653   2222211 10                              1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|+|++|++++.               ++ .+.+++...   .+.+.....   ..    .......++|||||+
T Consensus       230 ~~v~~~p~~~~l~s~s~---------------d~-~v~iwd~~~---~~~~~~~~~---~~----~~~~v~~~~~s~~g~  283 (340)
T 1got_B          230 NAICFFPNGNAFATGSD---------------DA-TCRLFDLRA---DQELMTYSH---DN----IICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEECC---TT----CCSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCEEEEEcC---------------CC-cEEEEECCC---CcEEEEEcc---CC----cccceEEEEECCCCC
Confidence            88999999999998765               22 333344321   111111000   00    012467899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||+..   ...+..+. |.                              .+....++|+|||++|+
T Consensus       284 ~l~~g~-~d~~i~vwd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          284 LLLAGY-DDFNCNVWDALK---ADRAGVLA-GH------------------------------DNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEEEE-TTSEEEEEETTT---CCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred             EEEEEC-CCCeEEEEEccc---CcEeeEee-cC------------------------------CCcEEEEEEcCCCCEEE
Confidence            999988 789999999854   23333321 22                              02468899999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      .++.
T Consensus       329 s~s~  332 (340)
T 1got_B          329 TGSW  332 (340)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            8864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.28  E-value=2.6e-10  Score=112.42  Aligned_cols=184  Identities=10%  Similarity=0.124  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCE-EEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRY-LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~-Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..++|+||+++ |+++. .+++|++||...   .+.+..+ .++                              ...+
T Consensus       149 ~v~~v~f~p~~~~~l~s~s-~D~~v~lwd~~~---~~~~~~l-~~H------------------------------~~~V  193 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGS-DDNTVAIFEGPP---FKFKSTF-GEH------------------------------TKFV  193 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEE-TTSCEEEEETTT---BEEEEEE-CCC------------------------------SSCE
T ss_pred             CceEEEECCCCCeEEEEEe-CCCeEEEEECCC---CeEeeee-ccc------------------------------cCce
Confidence            6789999999985 55554 589999999753   2333322 111                              1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|||||++|+.++.               ++ .+.+++..+   .+.+..+.......  ......+..++|||||+
T Consensus       194 ~~v~fspdg~~las~s~---------------D~-~i~lwd~~~---g~~~~~~~~~~~~~--~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGG---------------DG-TIVLYNGVD---GTKTGVFEDDSLKN--VAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---CCEEEECBCTTSSS--CSSSSCEEEEEECTTSS
T ss_pred             EEEEECCCCCEEEEEEC---------------CC-cEEEEECCC---CcEeeeeccccccc--cccCCCEEEEEECCCCC
Confidence            88999999999988765               22 333343321   11111110000000  01224678899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc--------------e---ecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG--------------K---IQSDSGVTVIDDPELDKQPDPVIIKGRRF  255 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg--------------~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (290)
                      +|+++. .+++|.+||+..   .+.+.++..+.              .   ...++++.+++.....  + ...+.|.. 
T Consensus       253 ~l~s~s-~D~~v~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~-~~~~~gh~-  324 (611)
T 1nr0_A          253 KIASAS-ADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--I-DQVRYGHN-  324 (611)
T ss_dssp             EEEEEE-TTSEEEEEETTT---TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--E-EEEECCCS-
T ss_pred             EEEEEe-CCCeEEEEeCCC---CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--c-ceEEcCCC-
Confidence            999888 689999999854   34444443221              1   1457778888754311  0 01112221 


Q ss_pred             cCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        256 TGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       256 ~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                       +....++|+|||++|++++.  ...-||
T Consensus       325 -~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          325 -KAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -CCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence             34789999999999999965  555565

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.5e-10  Score=109.21  Aligned_cols=159  Identities=13%  Similarity=0.175  Sum_probs=99.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIR--DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~--d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ..+.+++|+|||++|++++..+|+|.+||+.  ...   .+..+....                             ...
T Consensus       103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~-----------------------------~~~  150 (450)
T 2vdu_B          103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN---VLKLRKRFC-----------------------------FSK  150 (450)
T ss_dssp             CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS---CEEEEEEEE-----------------------------CSS
T ss_pred             CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc---eeeeeeccc-----------------------------CCC
Confidence            3688999999999986666568999999997  422   222221100                             014


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+..++|+|+|++|++++.               ++ .+..+++.+.   ..... +.....+    ....+..++|+||
T Consensus       151 ~v~~~~~sp~~~~l~~~~~---------------~g-~v~~~~~~~~---~~~~~-~~~~~~~----h~~~v~~~~~sp~  206 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADK---------------FG-DVYSIDINSI---PEEKF-TQEPILG----HVSMLTDVHLIKD  206 (450)
T ss_dssp             CEEEEEECTTSSEEEEEET---------------TS-EEEEEETTSC---CCSSC-CCCCSEE----CSSCEEEEEEEEC
T ss_pred             CceEEEEcCCCCEEEEEeC---------------CC-cEEEEecCCc---ccccc-cceeeec----ccCceEEEEEcCC
Confidence            6789999999999998865               12 2222322210   00000 0000000    1245778999999


Q ss_pred             ---CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        191 ---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       191 ---Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                         |++|+++. .+++|.+||+...   ..+..+..+.                              .+.+..++|+ |
T Consensus       207 ~~~~~~l~s~~-~d~~i~vwd~~~~---~~~~~~~~~h------------------------------~~~v~~~~~s-d  251 (450)
T 2vdu_B          207 SDGHQFIITSD-RDEHIKISHYPQC---FIVDKWLFGH------------------------------KHFVSSICCG-K  251 (450)
T ss_dssp             TTSCEEEEEEE-TTSCEEEEEESCT---TCEEEECCCC------------------------------SSCEEEEEEC-S
T ss_pred             CCCCcEEEEEc-CCCcEEEEECCCC---ceeeeeecCC------------------------------CCceEEEEEC-C
Confidence               99999888 5789999999542   2233222222                              1257899999 9


Q ss_pred             CCEEEEEcC--CCCCCC
Q psy11412        268 GKRIYVSSS--LFSPWD  282 (290)
Q Consensus       268 G~~L~Van~--~~~~~~  282 (290)
                      |++|++++.  .+.-||
T Consensus       252 ~~~l~s~~~d~~v~vwd  268 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWD  268 (450)
T ss_dssp             TTEEEEEESSSEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEE
Confidence            999999875  444554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.26  E-value=6.5e-10  Score=101.73  Aligned_cols=184  Identities=14%  Similarity=0.105  Sum_probs=109.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++++||+++|++++. ++.|.+||++.    +.+..+...                               ....
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~----~~~~~~~~h-------------------------------~~~v  207 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDS-TGRLLLLGLDG----HEIFKEKLH-------------------------------KAKV  207 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEET-TSEEEEEETTS----CEEEEEECS-------------------------------SSCE
T ss_pred             CCeEEEEECCCCCEEEEECC-CCCEEEEECCC----CEEEEeccC-------------------------------CCcE
Confidence            45889999999999998875 79999999832    222222111                               1467


Q ss_pred             eEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc-cccccCccccCccccCCCCceeEEEEcc-
Q psy11412        113 QMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN-EMRSMPLSSLGSWKYPARSMVTDILISL-  189 (290)
Q Consensus       113 r~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~~~i~~Sp-  189 (290)
                      ..++|+|+++ .|++++.                ++.+.+++........ .+..          +........++|+| 
T Consensus       208 ~~~~~~~~~~~~l~s~~~----------------d~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~  261 (383)
T 3ei3_B          208 THAEFNPRCDWLMATSSV----------------DATVKLWDLRNIKDKNSYIAE----------MPHEKPVNAAYFNPT  261 (383)
T ss_dssp             EEEEECSSCTTEEEEEET----------------TSEEEEEEGGGCCSTTCEEEE----------EECSSCEEEEEECTT
T ss_pred             EEEEECCCCCCEEEEEeC----------------CCEEEEEeCCCCCcccceEEE----------ecCCCceEEEEEcCC
Confidence            8899999999 6776554                1233334432210000 1110          11224577899999 


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe----------------eCce----e--------cCCCceEEecCCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF----------------LGGK----I--------QSDSGVTVIDDPEL  241 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~----------------~Gg~----~--------~~~~~v~~~~~~~~  241 (290)
                      ||++|+++. .++.|.+||+.+......+..-.                .+..    +        ..+++|.+|+....
T Consensus       262 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          262 DSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG  340 (383)
T ss_dssp             TSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred             CCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence            999999888 68999999996432222211000                0000    0        25788999997542


Q ss_pred             CCCCCcceeecccccCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412        242 DKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWD  282 (290)
Q Consensus       242 ~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~-~~~~~~  282 (290)
                      ..   ...+.+....+....++|+|||++|++++. .+.-|+
T Consensus       341 ~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~  379 (383)
T 3ei3_B          341 GL---VHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWN  379 (383)
T ss_dssp             CE---EEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEE
T ss_pred             ce---eeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEe
Confidence            10   112222222233566799999999998854 333443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=1.9e-10  Score=99.47  Aligned_cols=171  Identities=18%  Similarity=0.115  Sum_probs=100.7

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      ..-.+.|+..++.....   .....+..+++||||++|+++.  ++.|.+||+...+....+.   .+.           
T Consensus        22 ~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~---~~~-----------   82 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVD---TGF-----------   82 (297)
T ss_dssp             EEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECC---CTT-----------
T ss_pred             eeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEec---ccc-----------
Confidence            44566777776655433   2355788999999999998875  5799999996512222211   110           


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS  169 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~  169 (290)
                                        ....+..++|||||++|+++.....            ....+..++...    .....    
T Consensus        83 ------------------~~~~~~~~~~spdg~~l~~~~~~~~------------~~~~l~~~~~~~----~~~~~----  124 (297)
T 2ojh_A           83 ------------------ATICNNDHGISPDGALYAISDKVEF------------GKSAIYLLPSTG----GTPRL----  124 (297)
T ss_dssp             ------------------CCCBCSCCEECTTSSEEEEEECTTT------------SSCEEEEEETTC----CCCEE----
T ss_pred             ------------------ccccccceEECCCCCEEEEEEeCCC------------CcceEEEEECCC----CceEE----
Confidence                              0134667999999999998763110            001111111100    00110    


Q ss_pred             ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412        170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                            +........+++||||++|+++...++.+.+|++..... .. ..+.. .                        
T Consensus       125 ------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~-~~~~~-~------------------------  171 (297)
T 2ojh_A          125 ------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VE-TRLTH-G------------------------  171 (297)
T ss_dssp             ------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CE-EECCC-S------------------------
T ss_pred             ------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cc-eEccc-C------------------------
Confidence                  111223667899999999885554678889998742211 11 11111 1                        


Q ss_pred             eecccccCCcceEEEccCCCEEEEEcC
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                            ...+..+.|+|||++|+++..
T Consensus       172 ------~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          172 ------EGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             ------SSCEEEEEECTTSSEEEEEEC
T ss_pred             ------CCccccceECCCCCEEEEEec
Confidence                  125788999999999887753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.25  E-value=6.5e-10  Score=102.49  Aligned_cols=197  Identities=16%  Similarity=0.174  Sum_probs=118.2

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.++...+.....   .........+++|||++|++++. +|.|.+||+..   .+....+ .++              
T Consensus        81 ~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~-~~h--------------  138 (420)
T 3vl1_A           81 FLFNTIIRDGSKML---KRADYTAVDTAKLQMRRFILGTT-EGDIKVLDSNF---NLQREID-QAH--------------  138 (420)
T ss_dssp             EEEECCSEETTTTS---CSCCEEEEEEECSSSCEEEEEET-TSCEEEECTTS---CEEEEET-TSS--------------
T ss_pred             EEEEecccceeeEE---ecCCceEEEEEecCCCEEEEEEC-CCCEEEEeCCC---cceeeec-ccc--------------
Confidence            45566655544433   22334556679999999988875 78999999864   2222111 110              


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++|+|+|++|++++.               ++ .+.++++..   .+.+..+     .
T Consensus       139 ----------------~~~v~~~~~~~~~~~l~s~s~---------------d~-~i~iwd~~~---~~~~~~~-----~  178 (420)
T 3vl1_A          139 ----------------VSEITKLKFFPSGEALISSSQ---------------DM-QLKIWSVKD---GSNPRTL-----I  178 (420)
T ss_dssp             ----------------SSCEEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---CCCCEEE-----E
T ss_pred             ----------------cCccEEEEECCCCCEEEEEeC---------------CC-eEEEEeCCC---CcCceEE-----c
Confidence                            146788999999999998765               22 344444322   1111110     0


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee-----------------------------
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-----------------------------  223 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~-----------------------------  223 (290)
                      +    .......++|+|||++|+++. .++.|.+||+..   .+.+..+..                             
T Consensus       179 ~----h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          179 G----HRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             C----CSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             C----CCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            0    124577899999999999888 688999999854   222222211                             


Q ss_pred             --------Ccee---cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC-EEEEEcC--CCCCCCc
Q psy11412        224 --------GGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK-RIYVSSS--LFSPWDK  283 (290)
Q Consensus       224 --------Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~-~L~Van~--~~~~~~~  283 (290)
                              |..+   ..++.|.+||......  . ..+.. ...+....++|+|+|+ +|++++.  .+.-||-
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--T-IQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCCE--E-EEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCce--e-EEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence                    1011   4677899998654210  0 00100 1123578999999999 8888765  4455553

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.24  E-value=4.3e-10  Score=100.17  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=99.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|+++.. +|.|++|++.+.   +....+. ++                              .....
T Consensus        25 ~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~---~~~~~~~-~h------------------------------~~~v~   69 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG---KFEKTIS-GH------------------------------KLGIS   69 (312)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEETTTC---CEEEEEC-CC------------------------------SSCEE
T ss_pred             cEEEEEECCCCCEEEEeeC-CCeEEEEeCCCc---ccchhhc-cC------------------------------CCceE
Confidence            5789999999999988875 889999998653   2222211 11                              14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               + +.+.+++...   .+.+..+.     +    .......++|+|||++
T Consensus        70 ~~~~~~~~~~l~s~~~---------------d-~~i~vwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~~  121 (312)
T 4ery_A           70 DVAWSSDSNLLVSASD---------------D-KTLKIWDVSS---GKCLKTLK-----G----HSNYVFCCNFNPQSNL  121 (312)
T ss_dssp             EEEECTTSSEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSSE
T ss_pred             EEEEcCCCCEEEEECC---------------C-CEEEEEECCC---CcEEEEEc-----C----CCCCEEEEEEcCCCCE
Confidence            8999999999998765               2 2333344322   11111100     0    1235677999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+..   .+.+..+....                               +....++|+|+|++|++
T Consensus       122 l~s~~-~d~~i~iwd~~~---~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A          122 IVSGS-FDESVRIWDVKT---GKCLKTLPAHS-------------------------------DPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             EEEEE-TTSCEEEEETTT---CCEEEEECCCS-------------------------------SCEEEEEECTTSSEEEE
T ss_pred             EEEEe-CCCcEEEEECCC---CEEEEEecCCC-------------------------------CcEEEEEEcCCCCEEEE
Confidence            99888 688999999853   23333332111                               13578999999999998


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      ++.  .+.-||
T Consensus       167 ~~~d~~i~~wd  177 (312)
T 4ery_A          167 SSYDGLCRIWD  177 (312)
T ss_dssp             EETTSCEEEEE
T ss_pred             EeCCCcEEEEE
Confidence            865  444454

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.24  E-value=3e-10  Score=104.55  Aligned_cols=183  Identities=8%  Similarity=0.062  Sum_probs=108.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+|||++|+++.. +++|++||+..   .+.+..+..+                               ....
T Consensus       140 ~~V~~v~~spdg~~l~sgs~-dg~v~iwd~~~---~~~~~~~~~h-------------------------------~~~v  184 (357)
T 4g56_B          140 DIVKTLSVFSDGTQAVSGGK-DFSVKVWDLSQ---KAVLKSYNAH-------------------------------SSEV  184 (357)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCE
T ss_pred             CCEEEEEECCCCCEEEEEeC-CCeEEEEECCC---CcEEEEEcCC-------------------------------CCCE
Confidence            35789999999999988775 88999999865   3333322111                               1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|+++.++++...              ++ .+.++++..   .+.+.....       ......+..++|+||+.
T Consensus       185 ~~v~~s~~~~~~~~s~~~--------------dg-~v~~wd~~~---~~~~~~~~~-------~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGE--------------DG-RILLWDTRK---PKPATRIDF-------CASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             EEEEECTTCSSCEEEEET--------------TS-CEEECCTTS---SSCBCBCCC-------TTCCSCEEEEEECTTST
T ss_pred             EEEEEccCCCceeeeecc--------------CC-ceEEEECCC---Cceeeeeee-------ccccccccchhhhhccc
Confidence            889999999755544331              22 333344322   111111100       00123567899999865


Q ss_pred             -EEEEEeCCCCcEEEEEecCCCCce-------EeeEE---eeCcee----cCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412        193 -YLYTSNWMHGDIRQYDIRDTAHPV-------LVGQI---FLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFTG  257 (290)
Q Consensus       193 -~Lyvs~r~~~~V~v~Dv~d~~~~~-------~v~~i---~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (290)
                       +|+++. .++.|.+||+.+.....       .+..+   +.++.+    ..|++|++||.....    .....+.  .+
T Consensus       240 ~~la~g~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~----~~~~~~H--~~  312 (357)
T 4g56_B          240 DTFACGD-ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE----VFRDLSH--RD  312 (357)
T ss_dssp             TEEEEEE-SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE----EEEECCC--SS
T ss_pred             ceEEEee-cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc----EeEECCC--CC
Confidence             555555 68899999996432111       11112   223222    568889999875421    0111111  23


Q ss_pred             CcceEEEcc-CCCEEEEEcC--CCCCCC
Q psy11412        258 SSQMFQLSL-DGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       258 ~P~~~a~sP-DG~~L~Van~--~~~~~~  282 (290)
                      ..+.++|+| ||++|+.++.  ...-|+
T Consensus       313 ~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          313 FVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            579999999 8999988864  455554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=2.6e-10  Score=102.23  Aligned_cols=112  Identities=17%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++++|+|||++||+++...+.+.++.+..  .++ .+.        ..+.....+.         ....|.+|++++
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~--~~G-~~~--------~~~~~~~~~~---------~~~~p~g~~~d~  208 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL--QTG-QIS--------NRRSVYKLEK---------EEQIPDGMCIDA  208 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECT--TTC-CEE--------EEEEEEECCG---------GGCEEEEEEEBT
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccC--CCC-ccc--------CcEEEEECCC---------CCCCCCeeEECC
Confidence            46899999999999999876433333222210  111 110        0011111000         124578899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc-cCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS-LDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s-PDG  268 (290)
                      ||+ ||++++..+.|.+||..   +.+.+..+.+...                               .|..++|+ ||+
T Consensus       209 ~G~-lwva~~~~~~v~~~d~~---tG~~~~~i~~p~~-------------------------------~~t~~~f~g~d~  253 (297)
T 3g4e_A          209 EGK-LWVACYNGGRVIRLDPV---TGKRLQTVKLPVD-------------------------------KTTSCCFGGKNY  253 (297)
T ss_dssp             TSC-EEEEEETTTEEEEECTT---TCCEEEEEECSSS-------------------------------BEEEEEEESGGG
T ss_pred             CCC-EEEEEcCCCEEEEEcCC---CceEEEEEECCCC-------------------------------CceEEEEeCCCC
Confidence            995 79998888889998653   3456666665431                               68999998 999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++|||+++
T Consensus       254 ~~L~vt~~  261 (297)
T 3g4e_A          254 SEMYVTCA  261 (297)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEcC
Confidence            99999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.23  E-value=5.2e-10  Score=101.75  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=109.7

Q ss_pred             ceEEEEE-----cC-CCCEEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCccee
Q psy11412         34 MVTDILI-----SL-DDRYLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  103 (290)
Q Consensus        34 ~p~~va~-----Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~  103 (290)
                      .+..++|     ++ ||++|++++. +++|++||+......    ..... ..++                         
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~-D~~v~iWd~~~~~~~~~~~~~~~~-l~~h-------------------------   75 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSR-DKTVMIWKLYEEEQNGYFGIPHKA-LTGH-------------------------   75 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEET-TSCEEEEEECSSCCSSBSEEEEEE-ECCC-------------------------
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcC-CCEEEEEECCcCCcccccccccch-hccC-------------------------
Confidence            5788998     77 9999988775 899999999653211    11111 1110                         


Q ss_pred             eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCcee
Q psy11412        104 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVT  183 (290)
Q Consensus       104 ~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~  183 (290)
                           ......++|+|++++|+.++.               + +.+.+|++..   .+.+..+     .+    ......
T Consensus        76 -----~~~V~~~~~~~~~~~l~s~s~---------------D-~~v~lwd~~~---~~~~~~~-----~~----h~~~v~  122 (343)
T 2xzm_R           76 -----NHFVSDLALSQENCFAISSSW---------------D-KTLRLWDLRT---GTTYKRF-----VG----HQSEVY  122 (343)
T ss_dssp             -----SSCEEEEEECSSTTEEEEEET---------------T-SEEEEEETTS---SCEEEEE-----EC----CCSCEE
T ss_pred             -----CCceEEEEECCCCCEEEEEcC---------------C-CcEEEEECCC---CcEEEEE-----cC----CCCcEE
Confidence                 145788999999999987654               2 2444444322   1111110     01    124577


Q ss_pred             EEEEccCCCEEEEEeCCCCcEEEEEecCC---------CCceEeeEE---eeC----------ce---ecCCCceEEecC
Q psy11412        184 DILISLDDRYLYTSNWMHGDIRQYDIRDT---------AHPVLVGQI---FLG----------GK---IQSDSGVTVIDD  238 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~---------~~~~~v~~i---~~G----------g~---~~~~~~v~~~~~  238 (290)
                      .++|||||++|+++. .+++|.+||+...         .+...+..+   +.+          ..   ...|++|.+|+.
T Consensus       123 ~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  201 (343)
T 2xzm_R          123 SVAFSPDNRQILSAG-AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT  201 (343)
T ss_dssp             EEEECSSTTEEEEEE-TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred             EEEECCCCCEEEEEc-CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence            899999999999888 6899999998421         011111111   111          00   135788999984


Q ss_pred             CCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        239 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      ...    ....+.+.  .+....++|+|||++|+++..  ...-||-
T Consensus       202 ~~~----~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          202 NFQ----IRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             TTE----EEEEEECC--SSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             CCc----eeEEEcCc--cccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            321    00112222  135789999999999999865  4555653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.22  E-value=2.5e-10  Score=103.98  Aligned_cols=186  Identities=11%  Similarity=0.060  Sum_probs=103.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..++|+|||++|++++. +++|++||+...........+ .+                              -...
T Consensus        55 ~~~v~~~~~s~~~~~l~s~s~-d~~v~vwd~~~~~~~~~~~~~-~~------------------------------~~~~  102 (377)
T 3dwl_C           55 DKIVTCVDWAPKSNRIVTCSQ-DRNAYVYEKRPDGTWKQTLVL-LR------------------------------LNRA  102 (377)
T ss_dssp             SSCEEEEEECTTTCCEEEEET-TSSEEEC------CCCCEEEC-CC------------------------------CSSC
T ss_pred             CceEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEe-cc------------------------------cCCc
Confidence            346789999999999988875 789999999763211111111 01                              0146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|+|+|++|++++.               ++ .+.+++.........+..+.     +   +.......++|+|||
T Consensus       103 v~~~~~~~~~~~l~~~~~---------------d~-~i~iwd~~~~~~~~~~~~~~-----~---~h~~~v~~~~~~~~~  158 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSG---------------AR-VISVCYFEQENDWWVSKHLK-----R---PLRSTILSLDWHPNN  158 (377)
T ss_dssp             EEEEECCTTSSCCEEEES---------------SS-CEEECCC-----CCCCEEEC-----S---SCCSCEEEEEECTTS
T ss_pred             eEEEEECCCCCEEEEEec---------------CC-eEEEEEECCcccceeeeEee-----c---ccCCCeEEEEEcCCC
Confidence            788999999999998765               12 23333332210000011100     0   012457889999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCC---------------CceEee---------EE---eeCcee---cCCCceEEecCCCC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTA---------------HPVLVG---------QI---FLGGKI---QSDSGVTVIDDPEL  241 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~---------------~~~~v~---------~i---~~Gg~~---~~~~~v~~~~~~~~  241 (290)
                      ++|+++. .++.|.+||+....               ....+.         .+   +.|..+   ..|++|.+|+....
T Consensus       159 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          159 VLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             SEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             CEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            9999888 68899999984210               011111         11   111111   46777888886543


Q ss_pred             CCCCC-cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        242 DKQPD-PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       242 ~~~~~-~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ...+. ...+.+..  +....++|+|||++|+++..
T Consensus       238 ~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          238 EQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             TSCEEECCCEECSS--SCEEEEEEEETTEEEEEESS
T ss_pred             CCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcC
Confidence            22110 11222221  24689999999999988855

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.22  E-value=5e-11  Score=110.46  Aligned_cols=144  Identities=15%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -++.|+...+.........-...+..++++|||++|++++. +|.|++||+..   .+.+..+..++             
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~---~~~~~~~~~~~-------------  218 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-DKRVRVIEPRK---GTVVAEKDRPH-------------  218 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-TSEEEEEETTT---TEEEEEEECSS-------------
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-CCcEEEEeCCC---CceeeeeccCC-------------
Confidence            34566665554433200123446789999999999998875 79999999865   33333321221             


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                      .+..+..++|+|+|++|++.....             .++.+.+++.....  ..+..   .  
T Consensus       219 ----------------~~~~~~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~--~~~~~---~--  262 (402)
T 2aq5_A          219 ----------------EGTRPVHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLE--EPLSL---Q--  262 (402)
T ss_dssp             ----------------CSSSCCEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCS--SCSEE---E--
T ss_pred             ----------------CCCcceEEEEcCCCcEEEEeccCC-------------CCceEEEEcCcccc--CCceE---E--
Confidence                            113478899999999888862100             12233334432210  00000   0  


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                         .+........++++|||++||++...++.|.+||+.+
T Consensus       263 ---~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          263 ---ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             ---ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             ---eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence               0112234677999999999998886799999999965

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.22  E-value=9.5e-10  Score=99.17  Aligned_cols=159  Identities=8%  Similarity=-0.027  Sum_probs=102.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|++++. ++.|.+||+... ..+.+..+...                               .....
T Consensus        10 ~i~~~~~s~~~~~l~~~~~-d~~v~i~~~~~~-~~~~~~~~~~h-------------------------------~~~v~   56 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPN-NHEVHIYEKSGN-KWVQVHELKEH-------------------------------NGQVT   56 (372)
T ss_dssp             CCCEEEECTTSSEEEEECS-SSEEEEEEEETT-EEEEEEEEECC-------------------------------SSCEE
T ss_pred             CeEEEEECCCCCEEEEEeC-CCEEEEEeCCCC-cEEeeeeecCC-------------------------------CCccc
Confidence            4678999999999988764 899999998652 12233322211                               14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               ++ .+.+++...   .+......   .    ......+..++|+|||++
T Consensus        57 ~~~~~~~~~~l~~~~~---------------dg-~i~vwd~~~---~~~~~~~~---~----~~~~~~v~~~~~~~~~~~  110 (372)
T 1k8k_C           57 GVDWAPDSNRIVTCGT---------------DR-NAYVWTLKG---RTWKPTLV---I----LRINRAARCVRWAPNEKK  110 (372)
T ss_dssp             EEEEETTTTEEEEEET---------------TS-CEEEEEEET---TEEEEEEE---C----CCCSSCEEEEEECTTSSE
T ss_pred             EEEEeCCCCEEEEEcC---------------CC-eEEEEECCC---CeeeeeEE---e----ecCCCceeEEEECCCCCE
Confidence            8999999999998765               22 344444422   11010000   0    011245778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+...........+..+.                              .+....++|+|||++|++
T Consensus       111 l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C          111 FAVGS-GSRVISICYFEQENDWWVCKHIKKPI------------------------------RSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEEEE-TTSSEEEEEEETTTTEEEEEEECTTC------------------------------CSCEEEEEECTTSSEEEE
T ss_pred             EEEEe-CCCEEEEEEecCCCcceeeeeeeccc------------------------------CCCeeEEEEcCCCCEEEE
Confidence            99988 68899999996533222222221111                              125789999999999999


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      ++.  ...-||
T Consensus       160 ~~~dg~i~~~d  170 (372)
T 1k8k_C          160 GSCDFKCRIFS  170 (372)
T ss_dssp             EETTSCEEEEE
T ss_pred             EcCCCCEEEEE
Confidence            864  455565

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.22  E-value=5.9e-10  Score=103.57  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=99.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|+++.. +++|++||+..   .+.+..+. ++                              .....
T Consensus       125 ~v~~v~~s~dg~~l~s~~~-d~~i~iwd~~~---~~~~~~~~-~h------------------------------~~~v~  169 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAE-DRLIRIWDIEN---RKIVMILQ-GH------------------------------EQDIY  169 (393)
T ss_dssp             BEEEEEECTTSSEEEEEET-TSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEE
T ss_pred             eEEEEEECCCCCEEEEEcC-CCeEEEEECCC---CcEEEEEc-cC------------------------------CCCEE
Confidence            4779999999999998875 89999999965   23332221 11                              14578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc-CCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL-DDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp-DGr  192 (290)
                      .++|+|+|++|+.++.               + +.+.+|++..   .+....          +........++++| ||+
T Consensus       170 ~~~~~p~~~~l~s~s~---------------d-~~v~iwd~~~---~~~~~~----------~~~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          170 SLDYFPSGDKLVSGSG---------------D-RTVRIWDLRT---GQCSLT----------LSIEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             EEEECTTSSEEEEEET---------------T-SEEEEEETTT---TEEEEE----------EECSSCEEEEEECSTTCC
T ss_pred             EEEEcCCCCEEEEecC---------------C-CcEEEEECCC---CeeEEE----------EEcCCCcEEEEEECCCCC
Confidence            8999999999987664               2 2343344322   111110          01123466799999 999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||+..   ...+..+.....                      ...+.  .+....++|+|||++|+
T Consensus       221 ~l~~~s-~d~~v~iwd~~~---~~~~~~~~~~~~----------------------~~~~h--~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          221 YIAAGS-LDRAVRVWDSET---GFLVERLDSENE----------------------SGTGH--KDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             EEEEEE-TTSCEEEEETTT---CCEEEEEC----------------------------CCC--SSCEEEEEECTTSSEEE
T ss_pred             EEEEEc-CCCcEEEEECCC---CcEEEeeccccc----------------------CCCCC--CCCEEEEEECCCCCEEE
Confidence            998888 689999999853   233333211100                      00000  12478899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      ++..  .+.-||
T Consensus       273 s~s~d~~v~~wd  284 (393)
T 1erj_A          273 SGSLDRSVKLWN  284 (393)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCEEEEEE
Confidence            9864  455565

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.8e-09  Score=96.67  Aligned_cols=187  Identities=17%  Similarity=0.074  Sum_probs=109.3

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.|+...+.....  ..-...+.+++|+|||++|++++. +|.|.+||+...   +.+..+..                
T Consensus        57 ~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~---~~~~~~~~----------------  114 (369)
T 3zwl_B           57 SVWYSLNGERLGTL--DGHTGTIWSIDVDCFTKYCVTGSA-DYSIKLWDVSNG---QCVATWKS----------------  114 (369)
T ss_dssp             EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TTEEEEEETTTC---CEEEEEEC----------------
T ss_pred             EEEeCCCchhhhhh--hhcCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---cEEEEeec----------------
Confidence            45566555443332  012346789999999999998875 899999999653   33332221                


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ...+..++|+|+|++++++......           ..+.+..++.........+.........
T Consensus       115 ----------------~~~v~~~~~~~~~~~l~~~~~~~~~-----------~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B          115 ----------------PVPVKRVEFSPCGNYFLAILDNVMK-----------NPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             ----------------SSCEEEEEECTTSSEEEEEECCBTT-----------BCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             ----------------CCCeEEEEEccCCCEEEEecCCccC-----------CCCEEEEEEecCCccceeecccccceee
Confidence                            1467889999999999987652000           0123333333221000000000000000


Q ss_pred             c-cccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        173 S-WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       173 ~-~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                      . ...........++++|||++|+++. .++.|.+||+...  ...+..+....                          
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~~~--------------------------  218 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNN--YEYVDSIDLHE--------------------------  218 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTT--TEEEEEEECCS--------------------------
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCC--cEeEEEEecCC--------------------------
Confidence            0 0000112678899999999999988 6899999998542  23333332211                          


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                           +....++|+|||++|++++.  .+.-||
T Consensus       219 -----~~v~~~~~~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          219 -----KSISDMQFSPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             -----SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -----CceeEEEECCCCCEEEEecCCceEEEEE
Confidence                 25788999999999999864  344454

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=1.4e-10  Score=110.71  Aligned_cols=151  Identities=11%  Similarity=0.121  Sum_probs=95.5

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .|.+|+++| ++..||+++.. +.|+++|... .....+   ..+                               +..|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~-~~v~~~---~~~-------------------------------~~~P  181 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK-EYVSTV---YSG-------------------------------LSKV  181 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTT-TEEEEE---ECC-------------------------------CSCE
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCC-CEEEEE---ecC-------------------------------CCCc
Confidence            799999999 68899999986 8899998753 111111   111                               2579


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++|+|+++|++||+++...+....           .+.   ..+.  ......  ..     .++....|.+++++|++.
T Consensus       182 ~~ia~d~~G~~lyvad~~~~~~~~-----------~v~---~~~~--~g~~~~--~~-----~l~~~~~p~giavdp~~g  238 (430)
T 3tc9_A          182 RTICWTHEADSMIITNDQNNNDRP-----------NNY---ILTR--ESGFKV--IT-----ELTKGQNCNGAETHPING  238 (430)
T ss_dssp             EEEEECTTSSEEEEEECCSCTTSE-----------EEE---EEEG--GGTSCS--EE-----EEEECSSCCCEEECTTTC
T ss_pred             ceEEEeCCCCEEEEEeCCCCcccc-----------eEE---EEeC--CCceee--ee-----eeccCCCceEEEEeCCCC
Confidence            999999999999999863221110           000   0000  000000  00     001123567799999666


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +||+++++++.|..|+...   .........++                              ..+|++++|+|||++||
T Consensus       239 ~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~~------------------------------~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          239 ELYFNSWNAGQVFRYDFTT---QETTPLFTIQD------------------------------SGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             CEEEEETTTTEEEEEETTT---TEEEEEEECSS------------------------------SSCCEEEEECTTSSEEE
T ss_pred             EEEEEECCCCEEEEEECCC---CcEEEEEEcCC------------------------------CCcceeEEEcCCCCEEE
Confidence            7999999999999998742   12111111211                              12799999999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      +++.
T Consensus       286 v~d~  289 (430)
T 3tc9_A          286 IVVV  289 (430)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.22  E-value=2.1e-09  Score=97.02  Aligned_cols=172  Identities=12%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|+++.. +++|++||+.+.   +.+..+. ++                              .....
T Consensus        67 ~v~~~~~s~dg~~l~s~s~-D~~v~~wd~~~~---~~~~~~~-~h------------------------------~~~v~  111 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASW-DKTLRLWDVATG---ETYQRFV-GH------------------------------KSDVM  111 (319)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEEE-CC------------------------------SSCEE
T ss_pred             cEEEEEECCCCCEEEEEeC-CCEEEEEECCCC---CeeEEEc-cC------------------------------CCcEE
Confidence            5678999999999998875 899999999652   3333221 21                              14567


Q ss_pred             EEEEccCCCEEEEEcCCC--CCcceeecc--cccCCCceeecceeeeee----ecccccc-cCccccCccccC-------
Q psy11412        114 MFQLSLDGKRIYVSSSLF--SPWDKEIYP--DLVKTDAAFGSDEIMEFI----QRNEMRS-MPLSSLGSWKYP-------  177 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~--~~~d~~~~~--~~~~~g~~~~~~~~~~~~----~~~~i~~-~p~~~~~~~~~~-------  177 (290)
                      .++|+|++++|+..+...  ..|+.....  ........+..+......    ....+.+ -..+.+..|.+.       
T Consensus       112 ~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  191 (319)
T 3frx_A          112 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD  191 (319)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee
Confidence            899999999888776522  123221000  000000000000000000    0000000 000111112111       


Q ss_pred             ---CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412        178 ---ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       178 ---~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                         .......++|||||++|+++. .++.|.+||+..   .+.+..+....                             
T Consensus       192 ~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~-----------------------------  238 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA---KKAMYTLSAQD-----------------------------  238 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT---TEEEEEEECCS-----------------------------
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC---CcEEEEecCCC-----------------------------
Confidence               123577899999999999888 689999999864   34444433211                             


Q ss_pred             ccCCcceEEEccCCCEEEEEcC
Q psy11412        255 FTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       255 ~~~~P~~~a~sPDG~~L~Van~  276 (290)
                         ....++|+|||++|+++..
T Consensus       239 ---~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          239 ---EVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             ---CEEEEEECSSSSEEEEEET
T ss_pred             ---cEEEEEEcCCCCEEEEEcC
Confidence               4688999999999998865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.20  E-value=5.8e-10  Score=101.31  Aligned_cols=116  Identities=9%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             CceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ..+..++++|  +|++|++++. +|+|++||+....   .+......                              ...
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~---~~~~~~~~------------------------------~~~  171 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADN-RGTIGFQSYEDDS---QYIVHSAK------------------------------SDV  171 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEET-TCCEEEEESSSSC---EEEEECCC------------------------------SSC
T ss_pred             CCEEEEEcCCCCCCCEEEEEeC-CCcEEEEECCCCc---EEEEEecC------------------------------CCC
Confidence            3588999999  9999988875 8999999997532   22111010                              013


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc-cccCccccCccccCCCCceeEEEEcc
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM-RSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ....++|+|||++|++.+.               ++ .+.++++..   ...+ ..+.        .........|+|||
T Consensus       172 ~i~~~~~~pdg~~lasg~~---------------dg-~i~iwd~~~---~~~~~~~~~--------~~h~~~v~~l~fs~  224 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSP---------------DG-ILDVYNLSS---PDQASSRFP--------VDEEAKIKEVKFAD  224 (343)
T ss_dssp             CCCEEEECTTSCEEEEECT---------------TS-CEEEEESSC---TTSCCEECC--------CCTTSCEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEcC---------------CC-EEEEEECCC---CCCCccEEe--------ccCCCCEEEEEEeC
Confidence            5778999999999998654               22 344444432   1111 1111        00124678899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ||++|+++.  +++|.+||+..
T Consensus       225 ~g~~l~s~~--~~~v~iwd~~~  244 (343)
T 3lrv_A          225 NGYWMVVEC--DQTVVCFDLRK  244 (343)
T ss_dssp             TSSEEEEEE--SSBEEEEETTS
T ss_pred             CCCEEEEEe--CCeEEEEEcCC
Confidence            999999888  44999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.20  E-value=1.8e-09  Score=96.60  Aligned_cols=183  Identities=8%  Similarity=0.050  Sum_probs=112.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|+++.. +++|++||+.+.   +.+..+..+                               .....
T Consensus        57 ~v~~~~~~~~~~~l~s~s~-d~~i~vwd~~~~---~~~~~~~~h-------------------------------~~~v~  101 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG---EKVVDFEAH-------------------------------PDYIR  101 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred             cEEEEEEeCCCCEEEEECC-CCEEEEEECCCC---cEEEEEeCC-------------------------------CCcEE
Confidence            4678999999999998875 899999999753   223222111                               14578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc-CCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL-DDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp-DGr  192 (290)
                      .++|+|++++|+.++.               ++ .+.+|+...   ...+..    ...+    .......++|+| |++
T Consensus       102 ~~~~~~~~~~l~sgs~---------------D~-~v~lWd~~~---~~~~~~----~~~~----h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A          102 SIAVHPTKPYVLSGSD---------------DL-TVKLWNWEN---NWALEQ----TFEG----HEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             EEEECSSSSEEEEEET---------------TS-CEEEEEGGG---TTEEEE----EECC----CCSCEEEEEECTTCTT
T ss_pred             EEEEcCCCCEEEEECC---------------CC-eEEEEECCC---Ccchhh----hhcc----cCCcEEEEEECCCCCC
Confidence            8999999999987765               22 344444322   111110    0011    123567899999 688


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceE--------eeEE---ee-Cce-e---cCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVL--------VGQI---FL-GGK-I---QSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~--------v~~i---~~-Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                      .|+++. .+++|.+||+........        +..+   +. .+. +   ..|++|++||.....   ....+.|..  
T Consensus       155 ~l~sgs-~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~h~--  228 (304)
T 2ynn_A          155 TFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHM--  228 (304)
T ss_dssp             EEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE---EEEEEECCS--
T ss_pred             EEEEEe-CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc---cceeeCCCC--
Confidence            888877 689999999854221111        1111   11 111 1   568889999875421   011222222  


Q ss_pred             CCcceEEEccCCCEEEEEcC--CCCCCCcc
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS--LFSPWDKE  284 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~--~~~~~~~~  284 (290)
                      +....++|+|++++|+.+..  .+.-|+..
T Consensus       229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            24688999999999999865  66667643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.20  E-value=8.2e-10  Score=108.98  Aligned_cols=179  Identities=15%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..+++||||++|+++.. +|.|.+||...     ++..+. +..                  +        -....
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~-dg~V~iwd~~~-----~l~~l~-~~~------------------~--------~~~~s  131 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSN-NGNVSVFKDNK-----MLTNLD-SKG------------------N--------LSSRT  131 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEET-TSCEEEEETTE-----EEEECC-CSS------------------C--------STTTC
T ss_pred             CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCc-----eeeecc-CCC------------------c--------ccccc
Confidence            347899999999999998875 88999999532     333222 210                  0        00135


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc-------ccccCccccCccccCCCCceeE
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE-------MRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~-------i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                      .+.++|||||++|+++++               + +.+.+++..+   ...       +.++... ..+    ....+..
T Consensus       132 v~svafSPDG~~LAsgs~---------------D-GtVkIWd~~~---~~l~~~~~i~l~ti~~~-~~g----h~~~V~s  187 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNE---------------D-GELQFFSIRK---NSENTPEFYFESSIRLS-DAG----SKDWVTH  187 (588)
T ss_dssp             EEEEEECSSSSCEEEEET---------------T-SEEEEEECCC---CTTTCCCCEEEEEEECS-CTT----CCCCEEE
T ss_pred             EEEEEEcCCCCEEEEEcC---------------C-CEEEEEECCC---Cccccccceeeeeeecc-ccc----ccccEEE
Confidence            788999999999999876               2 2444455432   110       1111100 001    1247889


Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE-----------ee-Ccee--cCCCceEEecCCCCCCCCCccee
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-----------FL-GGKI--QSDSGVTVIDDPELDKQPDPVII  250 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-----------~~-Gg~~--~~~~~v~~~~~~~~~~~~~~~~~  250 (290)
                      +++||||  |.++. .+++|.+||+..........++           .- |..+  ..+++|.+|+..+..    ...+
T Consensus       188 VawSPdg--Laass-~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~----~~~~  260 (588)
T 2j04_A          188 IVWYEDV--LVAAL-SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYS----ISSL  260 (588)
T ss_dssp             EEEETTE--EEEEE-TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTE----EEEE
T ss_pred             EEEcCCc--EEEEe-CCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCe----EEEE
Confidence            9999999  55665 6899999999643211001111           00 3222  446789999966521    1012


Q ss_pred             e-cccccCCcceEEE--ccCCCEEEEEcC
Q psy11412        251 K-GRRFTGSSQMFQL--SLDGKRIYVSSS  276 (290)
Q Consensus       251 ~-~~~~~~~P~~~a~--sPDG~~L~Van~  276 (290)
                      + |.  .+....|+|  +|||+.|++|.+
T Consensus       261 ~~gh--~~~V~~va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          261 KTGS--LENFHIIPLNHEKESTILLMSNK  287 (588)
T ss_dssp             ECSC--CSCCCEEEETTCSSCEEEEECSS
T ss_pred             EcCC--CceEEEEEeeeCCCCCEEEEEcC
Confidence            2 32  235789999  999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.19  E-value=7.8e-10  Score=99.00  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=77.5

Q ss_pred             CCceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         32 PAMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        32 ~~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ...+..++|+||   |++|++++. +|.|++||+.+... .....+ .++                              
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~-~~h------------------------------   85 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSW-ANDVRCWEVQDSGQ-TIPKAQ-QMH------------------------------   85 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEET-TSEEEEEEECTTSC-EEEEEE-EEC------------------------------
T ss_pred             CCceEEEEEcCCCCCceEEEEECC-CCcEEEEEcCCCCc-eeEEEe-ccc------------------------------
Confidence            347889999999   688888775 79999999975222 111211 111                              


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE-
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI-  187 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~-  187 (290)
                      ......++|+|+|++|++++.               ++ .+.+++...   .+.+..          .........+++ 
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~---~~~~~~----------~~~~~~v~~~~~~  136 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASC---------------DK-TAKMWDLSS---NQAIQI----------AQHDAPVKTIHWI  136 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---TEEEEE----------EECSSCEEEEEEE
T ss_pred             cCCEEEEEECcCCCEEEEEcC---------------CC-cEEEEEcCC---CCceee----------ccccCceEEEEEE
Confidence            146788999999999998765               22 333344322   111110          001235677888 


Q ss_pred             -ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 -SLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 -SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                       +|||++|+++. .++.|.+||+..
T Consensus       137 ~~~~~~~l~~~~-~dg~i~vwd~~~  160 (368)
T 3mmy_A          137 KAPNYSCVMTGS-WDKTLKFWDTRS  160 (368)
T ss_dssp             ECSSCEEEEEEE-TTSEEEEECSSC
T ss_pred             eCCCCCEEEEcc-CCCcEEEEECCC
Confidence             99999999888 688999999854

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.19  E-value=1e-09  Score=98.95  Aligned_cols=153  Identities=5%  Similarity=-0.114  Sum_probs=98.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..++++|||++|++++. ++.|.+||+...........+..++                              ...
T Consensus        96 ~~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------~~~  144 (372)
T 1k8k_C           96 NRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPI------------------------------RST  144 (372)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTC------------------------------CSC
T ss_pred             CCceeEEEECCCCCEEEEEeC-CCEEEEEEecCCCcceeeeeeeccc------------------------------CCC
Confidence            446889999999999998875 7899999997643222222211110                              146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeee---------------eeecccccccCccccCcccc
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIME---------------FIQRNEMRSMPLSSLGSWKY  176 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~i~~~p~~~~~~~~~  176 (290)
                      +..++|+|++++|++.+..               + .+..+++..               ......+..          +
T Consensus       145 i~~~~~~~~~~~l~~~~~d---------------g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  198 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCD---------------F-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE----------S  198 (372)
T ss_dssp             EEEEEECTTSSEEEEEETT---------------S-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE----------C
T ss_pred             eeEEEEcCCCCEEEEEcCC---------------C-CEEEEEcccccccccccccccccccchhhheEe----------c
Confidence            7889999999999987651               1 222222110               000001110          1


Q ss_pred             C-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412        177 P-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  255 (290)
Q Consensus       177 ~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (290)
                      . .......++|+|||++|+++. .++.|.+||+..   .+.+..+....                              
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~~------------------------------  244 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADK---KMAVATLASET------------------------------  244 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGG---TTEEEEEECSS------------------------------
T ss_pred             CCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCC---CceeEEEccCC------------------------------
Confidence            1 123577899999999999988 689999999964   23444433211                              


Q ss_pred             cCCcceEEEccCCCEEEEEcC
Q psy11412        256 TGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       256 ~~~P~~~a~sPDG~~L~Van~  276 (290)
                       .....++|+|||++|+++..
T Consensus       245 -~~v~~~~~~~~~~~l~~~~d  264 (372)
T 1k8k_C          245 -LPLLAVTFITESSLVAAGHD  264 (372)
T ss_dssp             -CCEEEEEEEETTEEEEEETT
T ss_pred             -CCeEEEEEecCCCEEEEEeC
Confidence             14688999999999988844

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.19  E-value=3e-10  Score=104.57  Aligned_cols=160  Identities=11%  Similarity=0.096  Sum_probs=91.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCC-----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         33 AMVTDILISLDDRYLYTSNWM-----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~-----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      ..+.+++|||||++|+++...     +++|++|+..+............+                            . 
T Consensus        43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~----------------------------~-   93 (357)
T 4g56_B           43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ----------------------------T-   93 (357)
T ss_dssp             SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE----------------------------C-
T ss_pred             CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC----------------------------C-
Confidence            467899999999999988642     567888887542211111000011                            0 


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                       ..+...++|+||++.|.. +.               ++ .+.+|++..   .+.+.... ...    ......+..++|
T Consensus        94 -~~~V~~~~~s~d~~~l~~-s~---------------dg-~v~lWd~~~---~~~~~~~~-~~~----~~h~~~V~~v~~  147 (357)
T 4g56_B           94 -EAGVTDVAWVSEKGILVA-SD---------------SG-AVELWEILE---KESLLVNK-FAK----YEHDDIVKTLSV  147 (357)
T ss_dssp             -SSCEEEEEEETTTEEEEE-ET---------------TS-CEEEC-----------CCCC-EEE----CCCSSCEEEEEE
T ss_pred             -CCCEEEEEEcCCCCEEEE-EC---------------CC-EEEEeeccc---cceeEEEe-ecc----CCCCCCEEEEEE
Confidence             146788999999986654 32               12 344444432   11111000 000    011245788999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD  267 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD  267 (290)
                      ||||++|+++. .+++|.+||+..   .+.+..+....                               +..+.++|+|+
T Consensus       148 spdg~~l~sgs-~dg~v~iwd~~~---~~~~~~~~~h~-------------------------------~~v~~v~~s~~  192 (357)
T 4g56_B          148 FSDGTQAVSGG-KDFSVKVWDLSQ---KAVLKSYNAHS-------------------------------SEVNCVAACPG  192 (357)
T ss_dssp             CSSSSEEEEEE-TTSCEEEEETTT---TEEEEEECCCS-------------------------------SCEEEEEECTT
T ss_pred             CCCCCEEEEEe-CCCeEEEEECCC---CcEEEEEcCCC-------------------------------CCEEEEEEccC
Confidence            99999999888 688999999853   34444332111                               24678999999


Q ss_pred             CCEE-EEEcC--CCCCCC
Q psy11412        268 GKRI-YVSSS--LFSPWD  282 (290)
Q Consensus       268 G~~L-~Van~--~~~~~~  282 (290)
                      ++.+ +++..  .+.-||
T Consensus       193 ~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             CSSCEEEEETTSCEEECC
T ss_pred             CCceeeeeccCCceEEEE
Confidence            8744 44432  455565

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.19  E-value=1.4e-09  Score=99.22  Aligned_cols=170  Identities=10%  Similarity=0.069  Sum_probs=105.1

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      .+|++...++....   +....|.++++++++.+||+++...+.|..++............+...               
T Consensus        13 ~~i~~~~~~~~~~~---~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~---------------   74 (316)
T 1ijq_A           13 RKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------   74 (316)
T ss_dssp             EEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------
T ss_pred             EEEECCCcceEehh---cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---------------
Confidence            56676655443322   334589999999999999999998899999987531000111111000               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                     .-..|.+|++++.++.||+++...+.+.++..     ++...           ..+.  .     
T Consensus        75 ---------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~-----~g~~~-----------~~~~--~-----  116 (316)
T 1ijq_A           75 ---------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF--R-----  116 (316)
T ss_dssp             ---------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEET-----TSSSE-----------EEEE--E-----
T ss_pred             ---------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeC-----CCCce-----------EEEE--E-----
Confidence                           01478999999999999998763332222110     11100           0000  0     


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          .....|.+|+++|++++||+++++. +.|..++.+ ....+.+.   ...                          
T Consensus       117 ----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~---~~~--------------------------  162 (316)
T 1ijq_A          117 ----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV---TEN--------------------------  162 (316)
T ss_dssp             ----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE---CSS--------------------------
T ss_pred             ----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE---ECC--------------------------
Confidence                0124678999999999999999876 788888773 21111111   011                          


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                          -.+|++++++|++++||+++.
T Consensus       163 ----~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          163 ----IQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             ----CSCEEEEEEETTTTEEEEEET
T ss_pred             ----CCCceEEEEeccCCEEEEEEC
Confidence                027999999999999999976

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.18  E-value=7.1e-10  Score=103.03  Aligned_cols=167  Identities=19%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|||||++|+++.  ++++.+|++.+..   .+..+.........       ...+....      ........+
T Consensus        66 ~V~~v~fspdg~~la~g~--~~~v~i~~~~~g~---~~~~l~~~~~~~~~-------~~~~~~~~------~~~~~~~v~  127 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC--NKTTQVYRVSDGS---LVARLSDDSAANKD-------PENLNTSS------SPSSDLYIR  127 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC--BSCEEEEETTTCC---EEEEECC------------------------------CCCCBEE
T ss_pred             EEEEEEECCCCCEEEEEc--CCcEEEEEecCCC---EEEEecCccccccc-------cccccccc------cCCCceeEE
Confidence            467899999999998764  5799999997632   22222111000000       00000000      000012367


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|||++|+++++               ++ .+.++++..   .+.+..     ..+    .......++|+|||++
T Consensus       128 ~v~~s~dg~~l~s~~~---------------d~-~i~iwd~~~---~~~~~~-----~~~----h~~~v~~~~~~p~~~~  179 (393)
T 1erj_A          128 SVCFSPDGKFLATGAE---------------DR-LIRIWDIEN---RKIVMI-----LQG----HEQDIYSLDYFPSGDK  179 (393)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEE-----ECC----CSSCEEEEEECTTSSE
T ss_pred             EEEECCCCCEEEEEcC---------------CC-eEEEEECCC---CcEEEE-----Ecc----CCCCEEEEEEcCCCCE
Confidence            8999999999998765               22 333344322   111111     011    1245778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRIY  272 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L~  272 (290)
                      |+++. .+++|.+||+..   ...+..+....                                ....++|+| ||++|+
T Consensus       180 l~s~s-~d~~v~iwd~~~---~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          180 LVSGS-GDRTVRIWDLRT---GQCSLTLSIED--------------------------------GVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             EEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEEEEEECSTTCCEEE
T ss_pred             EEEec-CCCcEEEEECCC---CeeEEEEEcCC--------------------------------CcEEEEEECCCCCEEE
Confidence            99888 689999999853   23333322211                                467899999 899988


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      +++.  ...-||
T Consensus       224 ~~s~d~~v~iwd  235 (393)
T 1erj_A          224 AGSLDRAVRVWD  235 (393)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEcCCCcEEEEE
Confidence            8854  444454

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.18  E-value=2.5e-09  Score=95.16  Aligned_cols=146  Identities=12%  Similarity=0.165  Sum_probs=96.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++++|||++|++++. ++.|++||+...   +.+..+...                               .....
T Consensus        67 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~---~~~~~~~~~-------------------------------~~~v~  111 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASD-DKTLKIWDVSSG---KCLKTLKGH-------------------------------SNYVF  111 (312)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred             ceEEEEEcCCCCEEEEECC-CCEEEEEECCCC---cEEEEEcCC-------------------------------CCCEE
Confidence            5789999999999998875 889999999753   233222111                               13567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|++++|++.+.               ++ .+.+++...   .+.+..+.     .    .......++++|||++
T Consensus       112 ~~~~~~~~~~l~s~~~---------------d~-~i~iwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~~  163 (312)
T 4ery_A          112 CCNFNPQSNLIVSGSF---------------DE-SVRIWDVKT---GKCLKTLP-----A----HSDPVSAVHFNRDGSL  163 (312)
T ss_dssp             EEEECSSSSEEEEEET---------------TS-CEEEEETTT---CCEEEEEC-----C----CSSCEEEEEECTTSSE
T ss_pred             EEEEcCCCCEEEEEeC---------------CC-cEEEEECCC---CEEEEEec-----C----CCCcEEEEEEcCCCCE
Confidence            8999999999998765               22 333344321   11111111     0    1234678999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+..   .+.+..+....                              ......++|+|+|++|++
T Consensus       164 l~~~~-~d~~i~~wd~~~---~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          164 IVSSS-YDGLCRIWDTAS---GQCLKTLIDDD------------------------------NPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             EEEEE-TTSCEEEEETTT---CCEEEEECCSS------------------------------CCCEEEEEECTTSSEEEE
T ss_pred             EEEEe-CCCcEEEEECCC---CceeeEEeccC------------------------------CCceEEEEECCCCCEEEE
Confidence            99888 688999999854   23333222111                              013567999999999999


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      ++.
T Consensus       210 ~~~  212 (312)
T 4ery_A          210 ATL  212 (312)
T ss_dssp             EET
T ss_pred             EcC
Confidence            864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.18  E-value=1.5e-09  Score=97.05  Aligned_cols=62  Identities=11%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..++|+|||++|++++. +|.|++||+...   +.+...  ++                              ...
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~---~~~~~~--~~------------------------------~~~  129 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASC-DKTAKMWDLSSN---QAIQIA--QH------------------------------DAP  129 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEE--EC------------------------------SSC
T ss_pred             cCCEEEEEECcCCCEEEEEcC-CCcEEEEEcCCC---Cceeec--cc------------------------------cCc
Confidence            346789999999999998875 889999999752   222211  10                              145


Q ss_pred             ceEEEE--ccCCCEEEEEcC
Q psy11412        112 SQMFQL--SLDGKRIYVSSS  129 (290)
Q Consensus       112 Pr~vaf--sPdG~~lYv~ne  129 (290)
                      ...++|  +|++++|++++.
T Consensus       130 v~~~~~~~~~~~~~l~~~~~  149 (368)
T 3mmy_A          130 VKTIHWIKAPNYSCVMTGSW  149 (368)
T ss_dssp             EEEEEEEECSSCEEEEEEET
T ss_pred             eEEEEEEeCCCCCEEEEccC
Confidence            778888  999998888765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.18  E-value=2.7e-10  Score=104.98  Aligned_cols=165  Identities=13%  Similarity=0.005  Sum_probs=95.6

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -++.|+..++.....  ..-...+..++|+|++..+++++..+++|++||+....   ....+...              
T Consensus       151 i~iwd~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~--------------  211 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK---PASQIGCS--------------  211 (344)
T ss_dssp             EEEEETTTTEEEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS---CEEECC----------------
T ss_pred             EEEEECCCCcEEEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccc---eeeeeecc--------------
Confidence            355666665544432  01134678999999997655555568999999997532   22221111              


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCE-EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR-IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~-lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                     ..+..+..++|+|++.. |++.++               + +.+.++|...   .+.+..+.   
T Consensus       212 ---------------~~~~~~~~~~~~p~~~~~l~sg~~---------------d-g~v~~wd~~~---~~~~~~~~---  254 (344)
T 4gqb_B          212 ---------------APGYLPTSLAWHPQQSEVFVFGDE---------------N-GTVSLVDTKS---TSCVLSSA---  254 (344)
T ss_dssp             -----------------CCCEEEEEECSSCTTEEEEEET---------------T-SEEEEEESCC-----CCEEEE---
T ss_pred             ---------------eeeccceeeeecCCCCcceEEecc---------------C-CcEEEEECCC---CcEEEEEc---
Confidence                           00235678999997654 444433               2 2344444322   22222110   


Q ss_pred             cCccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412        171 LGSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                        +    .......|+|||||+ +|+++. .+++|.+||+..   .+.+. . .|.                        
T Consensus       255 --~----h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~---~~~~~-~-~~H------------------------  298 (344)
T 4gqb_B          255 --V----HSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSL---SELFR-S-QAH------------------------  298 (344)
T ss_dssp             --C----CSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTC---CEEEE-E-CCC------------------------
T ss_pred             --C----CCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCC---CcEEE-E-cCC------------------------
Confidence              1    124578899999995 566555 689999999853   23222 1 121                        


Q ss_pred             eecccccCCcceEEEccCCCEEEEE
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Va  274 (290)
                            .+..+.++|+|||++|+++
T Consensus       299 ------~~~V~~v~~sp~~~~llas  317 (344)
T 4gqb_B          299 ------RDFVRDATWSPLNHSLLTT  317 (344)
T ss_dssp             ------SSCEEEEEECSSSTTEEEE
T ss_pred             ------CCCEEEEEEeCCCCeEEEE
Confidence                  1257899999999877654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.18  E-value=7.4e-10  Score=106.56  Aligned_cols=150  Identities=15%  Similarity=0.204  Sum_probs=98.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|+|||++|++++. ++.|++||...    +.+..+. ++                              ....
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~-d~~v~~~~~~~----~~~~~~~-~~------------------------------~~~v  429 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASD-DKTVKLWNRNG----QLLQTLT-GH------------------------------SSSV  429 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEET-TSEEEEECTTC----CEEEEEE-CC------------------------------SSCE
T ss_pred             CCeEEEEECCCCCEEEEEeC-CCEEEEEeCCC----CEEEEec-CC------------------------------CCCe
Confidence            45789999999999988875 78999999632    2232221 11                              1456


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+||+++|++++.               ++ .+..++..    .+.+..+.         ........++|||||+
T Consensus       430 ~~~~~s~d~~~l~~~~~---------------d~-~v~~w~~~----~~~~~~~~---------~~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          430 WGVAFSPDDQTIASASD---------------DK-TVKLWNRN----GQLLQTLT---------GHSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-EEEEEETT----SCEEEEEE---------CCSSCEEEEEECTTSC
T ss_pred             EEEEECCCCCEEEEEcC---------------CC-EEEEEECC----CCEEEEEc---------CCCCCEEEEEEcCCCC
Confidence            78999999999998765               12 33333321    11111100         0124567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||..    .+.+..+. +.                              .+....++|+|||++|+
T Consensus       481 ~las~~-~d~~i~iw~~~----~~~~~~~~-~h------------------------------~~~v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          481 TIASAS-DDKTVKLWNRN----GQLLQTLT-GH------------------------------SSSVRGVAFSPDGQTIA  524 (577)
T ss_dssp             EEEEEE-TTSEEEEEETT----SCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred             EEEEEe-CCCEEEEEcCC----CCEEEEEe-CC------------------------------CCCEEEEEEcCCCCEEE
Confidence            999888 68899999963    23333332 21                              12478899999999999


Q ss_pred             EEcC--CCCCCCc
Q psy11412        273 VSSS--LFSPWDK  283 (290)
Q Consensus       273 Van~--~~~~~~~  283 (290)
                      ++..  ...-||.
T Consensus       525 s~~~dg~v~lwd~  537 (577)
T 2ymu_A          525 SASDDKTVKLWNR  537 (577)
T ss_dssp             EEETTSEEEEECT
T ss_pred             EEECcCEEEEEeC
Confidence            9865  5566764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.18  E-value=9.4e-10  Score=103.01  Aligned_cols=151  Identities=16%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|++++|++++. +|+|.+||+.....   ...+. ++                              .....
T Consensus       110 ~V~~~~~~p~~~~l~s~s~-Dg~i~vwd~~~~~~---~~~l~-~h------------------------------~~~V~  154 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASE-DATIKVWDYETGDF---ERTLK-GH------------------------------TDSVQ  154 (410)
T ss_dssp             CEEEEEECSSSSEEEEEES-SSCEEEEETTTCCC---CEEEC-CC------------------------------SSCEE
T ss_pred             cEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcE---EEEEe-cc------------------------------CCcEE
Confidence            5678999999999988775 89999999976322   22111 11                              14578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               ++ .+.+|+...   ...+..+.     +    .......++|+|||++
T Consensus       155 ~v~~~~~~~~l~sgs~---------------D~-~i~iwd~~~---~~~~~~~~-----~----h~~~V~~v~~~p~~~~  206 (410)
T 1vyh_C          155 DISFDHSGKLLASCSA---------------DM-TIKLWDFQG---FECIRTMH-----G----HDHNVSSVSIMPNGDH  206 (410)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CCCEEETTS---SCEEECCC-----C----CSSCEEEEEECSSSSE
T ss_pred             EEEEcCCCCEEEEEeC---------------CC-eEEEEeCCC---CceeEEEc-----C----CCCCEEEEEEeCCCCE
Confidence            8999999999988765               22 333343321   11122111     1    1235778999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .+++|.+||+..   ...+..+. +.                              ....+.+.++|||++|++
T Consensus       207 l~s~s-~D~~i~~wd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          207 IVSAS-RDKTIKMWEVQT---GYCVKTFT-GH------------------------------REWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             EEEEE-TTSEEEEEETTT---CCEEEEEE-CC------------------------------SSCEEEEEECTTSSEEEE
T ss_pred             EEEEe-CCCeEEEEECCC---CcEEEEEe-CC------------------------------CccEEEEEECCCCCEEEE
Confidence            99888 689999999954   23333322 22                              025688999999999998


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      +..  ...-|+
T Consensus       252 ~s~D~~v~vwd  262 (410)
T 1vyh_C          252 CSNDQTVRVWV  262 (410)
T ss_dssp             EETTSCEEEEE
T ss_pred             EcCCCeEEEEE
Confidence            864  455554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.17  E-value=8.8e-10  Score=103.82  Aligned_cols=166  Identities=14%  Similarity=0.020  Sum_probs=98.1

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      .-.+.|+..++.....   .....+.+++|||||++|+.+...+  ..|.+||+... ....+    .++          
T Consensus       204 ~i~~~d~~tg~~~~l~---~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~~~l----~~~----------  265 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQV----TDG----------  265 (415)
T ss_dssp             EEEEEETTTCCEEEEE---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEEC----CCC----------
T ss_pred             EEEEEECCCCcEEEee---cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CEEeC----cCC----------
Confidence            4456777765544322   2345678999999999998654333  45999998652 22111    110          


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                                          ......++|||||++|++++...+..             .+..++...   .. ...   
T Consensus       266 --------------------~~~~~~~~~spdg~~l~~~s~~~g~~-------------~i~~~d~~~---~~-~~~---  305 (415)
T 2hqs_A          266 --------------------RSNNTEPTWFPDSQNLAFTSDQAGRP-------------QVYKVNING---GA-PQR---  305 (415)
T ss_dssp             --------------------SSCEEEEEECTTSSEEEEEECTTSSC-------------EEEEEETTS---SC-CEE---
T ss_pred             --------------------CCcccceEECCCCCEEEEEECCCCCc-------------EEEEEECCC---CC-EEE---
Confidence                                13567899999999998876421111             111122111   00 110   


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCC--CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~--~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                        +.    ..+.....++|||||++|+++...  ...|.+||+.. +..+   .+. +.                     
T Consensus       306 --l~----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~~---~l~-~~---------------------  353 (415)
T 2hqs_A          306 --IT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGVQ---VLS-ST---------------------  353 (415)
T ss_dssp             --CC----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCEE---ECC-CS---------------------
T ss_pred             --Ee----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCEE---Eec-CC---------------------
Confidence              00    012346679999999999987754  35899999853 2211   111 11                     


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                .....++|+|||++|+.++.
T Consensus       354 ----------~~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          354 ----------FLDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             ----------SSCEEEEECTTSSEEEEEEE
T ss_pred             ----------CCcCCeEEcCCCCEEEEEEc
Confidence                      14678999999999888754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.6e-09  Score=95.56  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC-----CeEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH-----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV   86 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~-----g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~   86 (290)
                      -++.|+...+.....   .....+..++++|+|++|+++.. +     +.|.+||+........+......       .+
T Consensus        98 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------~~  166 (369)
T 3zwl_B           98 IKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILD-NVMKNPGSINIYEIERDSATHELTKVSEE-------PI  166 (369)
T ss_dssp             EEEEETTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEEC-CBTTBCCEEEEEEEEECTTTCCEEEECSS-------CS
T ss_pred             EEEEECCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecC-CccCCCCEEEEEEecCCccceeecccccc-------ee
Confidence            345566665554443   34557889999999999998875 5     89999999754332222111000       00


Q ss_pred             EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                      ..              ............++|+|+|++|++++.               ++ .+..++....  ...+..+
T Consensus       167 ~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~~--~~~~~~~  214 (369)
T 3zwl_B          167 HK--------------IITHEGLDAATVAGWSTKGKYIIAGHK---------------DG-KISKYDVSNN--YEYVDSI  214 (369)
T ss_dssp             EE--------------EECCTTCCCEEEEEECGGGCEEEEEET---------------TS-EEEEEETTTT--TEEEEEE
T ss_pred             ee--------------ccCCcCccceeEEEEcCCCCEEEEEcC---------------CC-EEEEEECCCC--cEeEEEE
Confidence            00              001111136788999999999998765               12 3333333210  0111110


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                      .         ........++|+|||++|+++. .++.|.+||+..   .+.+..+....                     
T Consensus       215 ~---------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~---~~~~~~~~~~~---------------------  260 (369)
T 3zwl_B          215 D---------LHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVST---LQVLKKYETDC---------------------  260 (369)
T ss_dssp             E---------CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT---CCEEEEEECSS---------------------
T ss_pred             e---------cCCCceeEEEECCCCCEEEEec-CCceEEEEECCC---CceeeeecCCC---------------------
Confidence            0         0123567899999999999888 688999999854   33444443222                     


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                 ....++|+|+|++|++++.
T Consensus       261 -----------~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          261 -----------PLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             -----------CEEEEEECSSSSEEEEEEC
T ss_pred             -----------CceeEEecCCCceEEEeec
Confidence                       5688999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.17  E-value=2.3e-10  Score=107.59  Aligned_cols=122  Identities=13%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++++|++..+++++..+|.|++||+......+.+..+...                               ...+
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------------------------~~~v  280 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-------------------------------TAEV  280 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-------------------------------SSCE
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-------------------------------CCCe
Confidence            468899999954444445556899999999764322222222111                               2578


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++++|+|+++++++++...               +.+.+++....  ...+..+.     .    ....+..|+++|+|+
T Consensus       281 ~~i~~~p~~~~~l~tg~~d---------------g~v~vwd~~~~--~~~~~~~~-----~----h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSAD---------------KTVALWDLRNL--KLKLHSFE-----S----HKDEIFQVQWSPHNE  334 (430)
T ss_dssp             EEEEECSSCTTEEEEEETT---------------SEEEEEETTCT--TSCSEEEE-----C----CSSCEEEEEECSSCT
T ss_pred             EEEEeCCCCCCEEEEEeCC---------------CeEEEEeCCCC--CCCeEEee-----c----CCCCEEEEEECCCCC
Confidence            9999999999777665522               23333433210  01111100     0    124578899999998


Q ss_pred             EEEEEeCCCCcEEEEEecC
Q psy11412        193 YLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ++++++..++.|.+||+..
T Consensus       335 ~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          335 TILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TEEEEEETTSCCEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEeCCC
Confidence            7777776899999999964

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.16  E-value=1.5e-09  Score=98.72  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             CceeEEEEccCCCEEEEEeC-CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        180 SMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r-~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      ..|.+|+|+|++..||+++. .++.|.+||. +   ...+..+...+.             .  ..+.+    + . -..
T Consensus       143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~---g~~~~~~~~~g~-------------~--~~~~~----~-~-~~~  197 (329)
T 3fvz_A          143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S---GKFVTQWGEESS-------------G--SSPRP----G-Q-FSV  197 (329)
T ss_dssp             SSEEEEEECTTTCCEEEEECSSCCEEEEECT-T---SCEEEEECEECC-------------S--SSCCT----T-E-ESC
T ss_pred             CCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C---CCEEEEeccCCC-------------C--CCCCC----c-c-cCC
Confidence            36899999996556799984 7899999984 2   233343322221             0  00000    0 0 026


Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      |++++|+||+..|||++.
T Consensus       198 p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          198 PHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             CcEEEEECCCCEEEEEEC
Confidence            999999999999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.16  E-value=1.3e-09  Score=96.01  Aligned_cols=148  Identities=8%  Similarity=0.027  Sum_probs=92.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.+++++|+|+ ||+++..++.|.+|+..    .+.+..+...+                             ....|
T Consensus       121 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~-----------------------------~~~~p  166 (286)
T 1q7f_A          121 QHPRGVTVDNKGR-IIVVECKVMRVIIFDQN----GNVLHKFGCSK-----------------------------HLEFP  166 (286)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTTEEEEECTT----SCEEEEEECTT-----------------------------TCSSE
T ss_pred             CCceEEEEeCCCC-EEEEECCCCEEEEEcCC----CCEEEEeCCCC-----------------------------ccCCc
Confidence            3799999999997 88888878999999853    12222221100                             01479


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++|+++|+|+ +|+++...+.               +..++..    .+.+..+..   .+    ....|.+|+++|||+
T Consensus       167 ~~i~~~~~g~-l~v~~~~~~~---------------i~~~~~~----g~~~~~~~~---~g----~~~~p~~i~~d~~G~  219 (286)
T 1q7f_A          167 NGVVVNDKQE-IFISDNRAHC---------------VKVFNYE----GQYLRQIGG---EG----ITNYPIGVGINSNGE  219 (286)
T ss_dssp             EEEEECSSSE-EEEEEGGGTE---------------EEEEETT----CCEEEEESC---TT----TSCSEEEEEECTTCC
T ss_pred             EEEEECCCCC-EEEEECCCCE---------------EEEEcCC----CCEEEEEcc---CC----ccCCCcEEEECCCCC
Confidence            9999999997 8887652222               2212210    001111000   00    014678999999995


Q ss_pred             EEEEEeCCCC-cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        193 YLYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       193 ~Lyvs~r~~~-~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                       ||+++..++ .|.+||..    .+.+..+..+..                             ...|..++++|||+ |
T Consensus       220 -l~v~~~~~~~~i~~~~~~----g~~~~~~~~~~~-----------------------------~~~~~~i~~~~~g~-l  264 (286)
T 1q7f_A          220 -ILIADNHNNFNLTIFTQD----GQLISALESKVK-----------------------------HAQCFDVALMDDGS-V  264 (286)
T ss_dssp             -EEEEECSSSCEEEEECTT----SCEEEEEEESSC-----------------------------CSCEEEEEEETTTE-E
T ss_pred             -EEEEeCCCCEEEEEECCC----CCEEEEEcccCC-----------------------------CCcceeEEECCCCc-E
Confidence             688887776 99999852    234455544321                             01588999999996 7


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ||++.
T Consensus       265 ~vs~~  269 (286)
T 1q7f_A          265 VLASK  269 (286)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            77753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.16  E-value=3.7e-10  Score=102.68  Aligned_cols=160  Identities=13%  Similarity=0.051  Sum_probs=93.3

Q ss_pred             ceEEEEEcCCCCEEEEEeC-CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~-~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .|++|+++|++..||+++. ..+.|.+|+. +   ...+..+...+.   .            ..+.+.      .-..|
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~---g~~~~~~~~~g~---~------------~~~~~~------~~~~p  198 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S---GKFVTQWGEESS---G------------SSPRPG------QFSVP  198 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECT-T---SCEEEEECEECC---S------------SSCCTT------EESCE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C---CCEEEEeccCCC---C------------CCCCCc------ccCCC
Confidence            6999999997677889984 7899999983 3   223322211110   0            000000      00469


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc---
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL---  189 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp---  189 (290)
                      ++|+|+|++..|||++...+.+.+               ++..+   .+.+..+...       ..+..+.+++++|   
T Consensus       199 ~gia~d~~~g~l~v~d~~~~~I~~---------------~~~~~---G~~~~~~~~~-------~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          199 HSLALVPHLDQLCVADRENGRIQC---------------FKTDT---KEFVREIKHA-------SFGRNVFAISYIPGFL  253 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---------------EETTT---CCEEEEECCT-------TTTTCEEEEEEETTEE
T ss_pred             cEEEEECCCCEEEEEECCCCEEEE---------------EECCC---CcEEEEEecc-------ccCCCcceeeecCCEE
Confidence            999999998899999863332222               22110   0111111000       0123567788888   


Q ss_pred             ---CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                         ||+ +|+++..+++|.+||..+   .+.+..+..+..                            ....|++++|+|
T Consensus       254 ~~~~g~-~~v~~~~~~~v~~~~~~~---g~~~~~~~~~~~----------------------------~~~~p~~ia~~~  301 (329)
T 3fvz_A          254 FAVNGK-PYFGDQEPVQGFVMNFSS---GEIIDVFKPVRK----------------------------HFDMPHDIVASE  301 (329)
T ss_dssp             EEEECC-CCTTCSCCCCEEEEETTT---CCEEEEECCSSS----------------------------CCSSEEEEEECT
T ss_pred             EEeCCC-EEeccCCCcEEEEEEcCC---CeEEEEEcCCCC----------------------------ccCCeeEEEECC
Confidence               665 555665667899998753   344444422110                            012699999999


Q ss_pred             CCCEEEEEcC
Q psy11412        267 DGKRIYVSSS  276 (290)
Q Consensus       267 DG~~L~Van~  276 (290)
                      || .|||++.
T Consensus       302 dG-~lyvad~  310 (329)
T 3fvz_A          302 DG-TVYIGDA  310 (329)
T ss_dssp             TS-EEEEEES
T ss_pred             CC-CEEEEEC
Confidence            99 8999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.16  E-value=2.1e-09  Score=96.95  Aligned_cols=183  Identities=16%  Similarity=0.178  Sum_probs=109.3

Q ss_pred             ceEEEEEcCCC-CEEEEEeCCCCeEEEEEcCCCCCc--eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         34 MVTDILISLDD-RYLYTSNWMHGDIRQYDIRDTAHP--VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        34 ~p~~va~SpDG-r~Lyva~~~~g~V~v~dv~d~~~~--~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .+..++++|++ ++|+++. .+++|++|++......  ..+..+ .++                              ..
T Consensus        19 ~V~~l~~~~~~~~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~-~~h------------------------------~~   66 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSAS-RDKTLISWKLTGDDQKFGVPVRSF-KGH------------------------------SH   66 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEE-TTSEEEEEEEEEETTEEEEEEEEE-ECC------------------------------SS
T ss_pred             eEEEEEccCCCccEEEEec-CCccEEEecCCCCCccccccceEE-eCC------------------------------cc
Confidence            57889999976 7777666 4899999998642211  111111 111                              14


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ....++|+|||++|+.++.               + +.+.++++.+   .+.+..+     .+    ....+..++|+|+
T Consensus        67 ~v~~~~~s~dg~~l~s~s~---------------D-~~v~~wd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~  118 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASW---------------D-KTLRLWDVAT---GETYQRF-----VG----HKSDVMSVDIDKK  118 (319)
T ss_dssp             CEEEEEECTTSSEEEEEET---------------T-SEEEEEETTT---TEEEEEE-----EC----CSSCEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeC---------------C-CEEEEEECCC---CCeeEEE-----cc----CCCcEEEEEEcCC
Confidence            5778999999999998764               2 2444444422   1111110     01    1245778999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCC------CceEeeEE---eeC-----c-ee---cCCCceEEecCCCCCCCCCcceeec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTA------HPVLVGQI---FLG-----G-KI---QSDSGVTVIDDPELDKQPDPVIIKG  252 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~------~~~~v~~i---~~G-----g-~~---~~~~~v~~~~~~~~~~~~~~~~~~~  252 (290)
                      |++|+++. .+++|.+||+....      +...+..+   +.+     + .+   ..|++|.+|+......   ...+.|
T Consensus       119 ~~~l~s~s-~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~  194 (319)
T 3frx_A          119 ASMIISGS-RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---EADFIG  194 (319)
T ss_dssp             SCEEEEEE-TTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---EEEECC
T ss_pred             CCEEEEEe-CCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---heeecC
Confidence            99999888 68999999985310      00001111   100     0 11   4678899998654210   011122


Q ss_pred             ccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      .  .+....++|+|||++|+++..  .+.-||
T Consensus       195 h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          195 H--NSNINTLTASPDGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             C--CSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             C--CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            2  134789999999999999865  455565

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.15  E-value=1.6e-09  Score=100.20  Aligned_cols=163  Identities=18%  Similarity=0.226  Sum_probs=96.7

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..+++++ ++.+|++++. +++|++||+......  +..+ .++                              ....
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~-D~~v~~wd~~~~~~~--~~~~-~~h------------------------------~~~v  252 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSC-DTTVRLWDLRITSRA--VRTY-HGH------------------------------EGDI  252 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEET-TSCEEEEETTTTCCC--CEEE-CCC------------------------------SSCC
T ss_pred             CeEEEEeecCCCCEEEEEEC-CCeEEEEECCCCCcc--eEEE-CCc------------------------------CCCe
Confidence            567888876 7888877664 899999999643221  1111 111                              1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|||++|+.++.               ++ .+.+|+...   ...+..........  .........++|||||+
T Consensus       253 ~~v~~~p~~~~l~s~s~---------------D~-~i~lwd~~~---~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~  311 (380)
T 3iz6_a          253 NSVKFFPDGQRFGTGSD---------------DG-TCRLFDMRT---GHQLQVYNREPDRN--DNELPIVTSVAFSISGR  311 (380)
T ss_dssp             CEEEECTTSSEEEEECS---------------SS-CEEEEETTT---TEEEEEECCCCSSS--CCSSCSCSEEEECSSSS
T ss_pred             EEEEEecCCCeEEEEcC---------------CC-eEEEEECCC---CcEEEEeccccccc--ccccCceEEEEECCCCC
Confidence            88999999999988765               22 333333321   11111100000000  00012356799999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .++.|.+||+...   +.+..+..-.                  ..|         .+....++|+|||++|+
T Consensus       312 ~l~~g~-~dg~i~vwd~~~~---~~~~~~~~~~------------------~~h---------~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          312 LLFAGY-SNGDCYVWDTLLA---EMVLNLGTLQ------------------NSH---------EGRISCLGLSSDGSALC  360 (380)
T ss_dssp             EEEEEC-TTSCEEEEETTTC---CEEEEECCSC------------------SSC---------CCCCCEEEECSSSSEEE
T ss_pred             EEEEEE-CCCCEEEEECCCC---ceEEEEeccc------------------CCC---------CCceEEEEECCCCCEEE
Confidence            999887 6899999998532   2222221100                  000         12478899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      +++.  ...-|+
T Consensus       361 sgs~D~~i~iW~  372 (380)
T 3iz6_a          361 TGSWDKNLKIWA  372 (380)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EeeCCCCEEEEe
Confidence            9864  555565

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.15  E-value=6e-10  Score=111.08  Aligned_cols=138  Identities=12%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCC-----eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHG-----DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g-----~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      +..+.+++|||||++|+.++..++     +|.+||+... ....+.  . +....+.+...........+..       .
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-------~  104 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLV--D-SKVVLPGTETLSDEEKARRERQ-------R  104 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEE--C-GGGTC-------------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEcc--c-hhhcccccccccchhhhhhhhh-------h
Confidence            446889999999999998886455     8999999753 222221  1 1100000000000000000000       0


Q ss_pred             ccC-CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc--cccccCccccCccccCCCCcee
Q psy11412        107 RFT-GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN--EMRSMPLSSLGSWKYPARSMVT  183 (290)
Q Consensus       107 ~~g-~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~--~i~~~p~~~~~~~~~~~~~~~~  183 (290)
                      ..+ .....++|||||++|++++.  +               .+.++++..   ..  .+..+.         .....+.
T Consensus       105 ~~~~~~v~~~~~SpDg~~l~~~~~--~---------------~i~~~d~~~---~~~~~~~~l~---------~~~~~~~  155 (741)
T 2ecf_A          105 IAAMTGIVDYQWSPDAQRLLFPLG--G---------------ELYLYDLKQ---EGKAAVRQLT---------HGEGFAT  155 (741)
T ss_dssp             --CCEESCCCEECTTSSEEEEEET--T---------------EEEEEESSS---CSTTSCCBCC---------CSSSCEE
T ss_pred             hccccCcceeEECCCCCEEEEEeC--C---------------cEEEEECCC---CCcceEEEcc---------cCCcccc
Confidence            000 13567999999999998764  1               222233221   10  111000         0123567


Q ss_pred             EEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        184 DILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      .++|||||++|+.+.  ++.|.+||+..
T Consensus       156 ~~~~SPDG~~la~~~--~~~i~~~d~~~  181 (741)
T 2ecf_A          156 DAKLSPKGGFVSFIR--GRNLWVIDLAS  181 (741)
T ss_dssp             EEEECTTSSEEEEEE--TTEEEEEETTT
T ss_pred             cccCCCCCCEEEEEe--CCcEEEEecCC
Confidence            899999999888765  35899999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2.1e-09  Score=97.39  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=95.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC----CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA----HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~----~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+..++|+|||++|+++.. +++|++|++....    ....+..+ .++                              .
T Consensus        60 ~v~~v~~sp~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~-~~h------------------------------~  107 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSF-DSTVSIWAKEESADRTFEMDLLAII-EGH------------------------------E  107 (330)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEEC-------CCCEEEEEE-C---------------------------------
T ss_pred             CEEEEEECCCCCEEEEEeC-CCcEEEEEcccCcCccccceeEEEE-cCC------------------------------C
Confidence            5789999999999988875 8999999985421    11222211 110                              1


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-ecccccccCccccCccccCCCCceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-QRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      .....++|+|+|++|+.++.               ++ .+.+++..... ....+..     ..+    .......++|+
T Consensus       108 ~~V~~v~~sp~g~~las~s~---------------D~-~v~iwd~~~~~~~~~~~~~-----~~~----h~~~v~~v~~~  162 (330)
T 2hes_X          108 NEVKGVAWSNDGYYLATCSR---------------DK-SVWIWETDESGEEYECISV-----LQE----HSQDVKHVIWH  162 (330)
T ss_dssp             -CEEEEEECTTSCEEEEEET---------------TS-CEEEEECCTTCCCCEEEEE-----ECC----CSSCEEEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEeC---------------CC-EEEEEeccCCCCCeEEEEE-----ecc----CCCceEEEEEC
Confidence            45788999999999998765               22 33334431100 0000110     001    12457789999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC-
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD-  267 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD-  267 (290)
                      |||++|+++. .+++|.+||+... ..+.+..+. |.                              .+....++|+|+ 
T Consensus       163 p~~~~l~s~s-~D~~i~iW~~~~~-~~~~~~~~~-~h------------------------------~~~v~~~~~~~~~  209 (330)
T 2hes_X          163 PSEALLASSS-YDDTVRIWKDYDD-DWECVAVLN-GH------------------------------EGTVWSSDFDKTE  209 (330)
T ss_dssp             SSSSEEEEEE-TTSCEEEEEEETT-EEEEEEEEC-CC------------------------------SSCEEEEEECCSS
T ss_pred             CCCCEEEEEc-CCCeEEEEECCCC-CeeEEEEcc-CC------------------------------CCcEEEEEecCCC
Confidence            9999999888 6899999998531 112222221 11                              124678999998 


Q ss_pred             -CCEEEEEcC--CCCCCC
Q psy11412        268 -GKRIYVSSS--LFSPWD  282 (290)
Q Consensus       268 -G~~L~Van~--~~~~~~  282 (290)
                       +.+|+.+..  ...-|+
T Consensus       210 ~~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          210 GVFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             SSCEEEEEETTSCEEEEE
T ss_pred             CeeEEEEEeCCCeEEEEE
Confidence             778877754  555564

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.15  E-value=2.4e-09  Score=97.29  Aligned_cols=176  Identities=15%  Similarity=0.229  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+||+++|+++.. +++|++||+.+.   +.+..+. ++                              .....
T Consensus        78 ~V~~~~~~~~~~~l~s~s~-D~~v~lwd~~~~---~~~~~~~-~h------------------------------~~~v~  122 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSW-DKTLRLWDLRTG---TTYKRFV-GH------------------------------QSEVY  122 (343)
T ss_dssp             CEEEEEECSSTTEEEEEET-TSEEEEEETTSS---CEEEEEE-CC------------------------------CSCEE
T ss_pred             ceEEEEECCCCCEEEEEcC-CCcEEEEECCCC---cEEEEEc-CC------------------------------CCcEE
Confidence            5778999999999988775 899999999753   2222221 11                              14578


Q ss_pred             EEEEccCCCEEEEEcCCC--CCcceee-----cccccCCCceeecceeeeeeecc-----------ccccc-CccccCcc
Q psy11412        114 MFQLSLDGKRIYVSSSLF--SPWDKEI-----YPDLVKTDAAFGSDEIMEFIQRN-----------EMRSM-PLSSLGSW  174 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~--~~~d~~~-----~~~~~~~g~~~~~~~~~~~~~~~-----------~i~~~-p~~~~~~~  174 (290)
                      .++|+|||++|+.++...  ..|+...     ..........+   ....+....           .+.+. ..+.+..|
T Consensus       123 ~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  199 (343)
T 2xzm_R          123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV---SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW  199 (343)
T ss_dssp             EEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE---EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee---eeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence            899999999998876521  1232210     00000000000   000000000           00000 00001111


Q ss_pred             c--------cC-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC
Q psy11412        175 K--------YP-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP  245 (290)
Q Consensus       175 ~--------~~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~  245 (290)
                      .        +. .......++|||||++|+++. .++.|.+||+.....  ....+..+.                    
T Consensus       200 d~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~~~--~~~~~~~~~--------------------  256 (343)
T 2xzm_R          200 NTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTY--PQREFDAGS--------------------  256 (343)
T ss_dssp             ETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTCEEEEEESSCCSS--CSEEEECSS--------------------
T ss_pred             cCCCceeEEEcCccccceEEEECCCCCEEEEEc-CCCeEEEEECCCCcc--cceeecCCC--------------------
Confidence            1        00 123577899999999999888 689999999843221  111121222                    


Q ss_pred             CcceeecccccCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412        246 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWD  282 (290)
Q Consensus       246 ~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~-~~~~~~  282 (290)
                                  ....++|+|+|++|+++.. ...-|+
T Consensus       257 ------------~v~~v~~sp~~~~la~~~d~~v~iw~  282 (343)
T 2xzm_R          257 ------------TINQIAFNPKLQWVAVGTDQGVKIFN  282 (343)
T ss_dssp             ------------CEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred             ------------cEEEEEECCCCCEEEEECCCCEEEEE
Confidence                        4688999999999988754 334443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.14  E-value=1.4e-09  Score=98.00  Aligned_cols=183  Identities=14%  Similarity=0.135  Sum_probs=99.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCe--EEEEEcCCCCCceeeeEEeec-----------cc-c---cCCCceEEecCCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGD--IRQYDIRDTAHPVLVGQIFLG-----------GK-I---QSDSGVTVIDDPE   93 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~--V~v~dv~d~~~~~~~~~i~~g-----------~~-~---~~~~~~~v~~~~~   93 (290)
                      ++..|+++++++||+ ||+++.+.+.  |..++..+ +..+.+..+...           +. +   ...+.+++++...
T Consensus        70 ~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           70 VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCC-CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            456899999999999 7889865434  66666544 233322211000           00 0   0123444444221


Q ss_pred             C--cCC--CCccee-eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         94 L--DKQ--PDPVII-KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        94 ~--~~~--~~~~~~-~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                      .  ...  ...... .....-..|.+|  +|||++||+++...+.+.++....   ++ .+.....        ..    
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~---~g-~~~~~~~--------~~----  209 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS---TD-KPGEPEI--------FV----  209 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT---TS-CBCCCEE--------EE----
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC---CC-CCCccEE--------Ee----
Confidence            0  000  000000 000011467887  999999999987444333222110   01 1100000        00    


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV  248 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~  248 (290)
                               ....|.+|++++||+ ||++++.++.|.+||..  +....+..++.+.                       
T Consensus       210 ---------~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~--G~~~~~~~~~~~~-----------------------  254 (306)
T 2p4o_A          210 ---------EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD--RSTTIIAQAEQGV-----------------------  254 (306)
T ss_dssp             ---------ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTT--CCEEEEECGGGTC-----------------------
T ss_pred             ---------ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCC--CCEEEEeeccccc-----------------------
Confidence                     012456799999996 69999999999998742  2222233333321                       


Q ss_pred             eeecccccCCcceEEEc---cCCCEEEEEcC
Q psy11412        249 IIKGRRFTGSSQMFQLS---LDGKRIYVSSS  276 (290)
Q Consensus       249 ~~~~~~~~~~P~~~a~s---PDG~~L~Van~  276 (290)
                              ..|..++|+   |||++|||++.
T Consensus       255 --------~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          255 --------IGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             --------TTEEEEEECCSTTTTTEEEEEEC
T ss_pred             --------CCceEEEEecccCCCCEEEEECC
Confidence                    279999999   99999999987

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.14  E-value=2e-09  Score=98.74  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=93.4

Q ss_pred             ceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+..++++|  +|++|++++. +|+|++||+...   +.+..+...                               ...
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~-Dg~v~~wd~~~~---~~~~~~~~h-------------------------------~~~  242 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGC-DKKAMVWDMRSG---QCVQAFETH-------------------------------ESD  242 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEET-TSCEEEEETTTC---CEEEEECCC-------------------------------SSC
T ss_pred             CeEEEEEEeCCCCCEEEEEeC-CCeEEEEECCCC---cEEEEecCC-------------------------------CCC
Confidence            456778877  5789988775 899999999753   223222111                               145


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|+|+|+.|++++.               ++ .+.+++...   .+.+.....   ..    .......++|||||
T Consensus       243 v~~v~~~p~~~~l~s~s~---------------D~-~v~lwd~~~---~~~~~~~~~---~~----~~~~~~~~~~s~~g  296 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSD---------------DA-TCRLYDLRA---DREVAIYSK---ES----IIFGASSVDFSLSG  296 (354)
T ss_dssp             EEEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEECC---TT----CCSCEEEEEECTTS
T ss_pred             eEEEEEeCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEcC---CC----cccceeEEEEeCCC
Confidence            788999999999988765               22 333333321   111111000   00    01245679999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ++|+++. .+++|.+||+..   ...+..+. |.                              .+....++|+|||++|
T Consensus       297 ~~l~~g~-~d~~i~vwd~~~---~~~~~~l~-~h------------------------------~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          297 RLLFAGY-NDYTINVWDVLK---GSRVSILF-GH------------------------------ENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             SEEEEEE-TTSCEEEEETTT---CSEEEEEC-CC------------------------------SSCEEEEEECTTSSCE
T ss_pred             CEEEEEE-CCCcEEEEECCC---CceEEEEE-CC------------------------------CCcEEEEEECCCCCEE
Confidence            9999988 688999999853   22333221 22                              1257889999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ++++.
T Consensus       342 ~sgs~  346 (354)
T 2pbi_B          342 CSGSW  346 (354)
T ss_dssp             EEEET
T ss_pred             EEEcC
Confidence            98864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.14  E-value=3.2e-09  Score=99.98  Aligned_cols=167  Identities=17%  Similarity=0.098  Sum_probs=95.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      .-++.|+..+......   .-...+..+++||||++|+.+....  ..|.+||+... ....+    .++          
T Consensus       160 ~i~i~d~~g~~~~~l~---~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-~~~~l----~~~----------  221 (415)
T 2hqs_A          160 ELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AVRQV----ASF----------  221 (415)
T ss_dssp             EEEEEETTSCSCEEEE---EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEEE----ECC----------
T ss_pred             eEEEEcCCCCCCEEEe---CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-cEEEe----ecC----------
Confidence            4456666533322111   1134678899999999999887643  49999999753 22221    110          


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                                          ......++|||||++|+++....+..             .+..++...   .+ ...   
T Consensus       222 --------------------~~~~~~~~~spdg~~la~~~~~~g~~-------------~i~~~d~~~---~~-~~~---  261 (415)
T 2hqs_A          222 --------------------PRHNGAPAFSPDGSKLAFALSKTGSL-------------NLYVMDLAS---GQ-IRQ---  261 (415)
T ss_dssp             --------------------SSCEEEEEECTTSSEEEEEECTTSSC-------------EEEEEETTT---CC-EEE---
T ss_pred             --------------------CCcccCEEEcCCCCEEEEEEecCCCc-------------eEEEEECCC---CC-EEe---
Confidence                                13567899999999888654321111             122222211   11 110   


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCC--cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~--~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                        +.    ........++|||||++|+++...++  .|.+||+.. +..+.   +...+                     
T Consensus       262 --l~----~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~~~~---l~~~~---------------------  310 (415)
T 2hqs_A          262 --VT----DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GAPQR---ITWEG---------------------  310 (415)
T ss_dssp             --CC----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCCEE---CCCSS---------------------
T ss_pred             --Cc----CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CCEEE---EecCC---------------------
Confidence              00    01234677999999998887663334  677777743 12111   11111                     


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                .....++|||||++|++++.
T Consensus       311 ----------~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          311 ----------SQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             ----------SEEEEEEECTTSSEEEEEEE
T ss_pred             ----------CcccCeEECCCCCEEEEEEC
Confidence                      14678999999999998864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.13  E-value=8.6e-10  Score=103.70  Aligned_cols=187  Identities=14%  Similarity=0.174  Sum_probs=107.0

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..|+|+|+ ++.|++++ .+|+|.+||+........+.  ..|+                              ....
T Consensus       121 ~V~~l~~~P~~~~~lasGs-~dg~i~lWd~~~~~~~~~~~--~~gH------------------------------~~~V  167 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGS-KGGDIMLWNFGIKDKPTFIK--GIGA------------------------------GGSI  167 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEE-TTSCEEEECSSCCSCCEEEC--CCSS------------------------------SCCC
T ss_pred             CEEEEEEeCCCCCEEEEEe-CCCEEEEEECCCCCceeEEE--ccCC------------------------------CCCE
Confidence            4789999995 56776665 58999999997533222221  0111                              1467


Q ss_pred             eEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ..|+|+| |+++|+.++.               ++ .+.+|++..    +.+......  .    ........++|+|||
T Consensus       168 ~~l~f~p~~~~~l~s~s~---------------D~-~v~iwd~~~----~~~~~~~~~--~----~~~~~~~~~~~~~~~  221 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSM---------------EG-TTRLQDFKG----NILRVFASS--D----TINIWFCSLDVSASS  221 (435)
T ss_dssp             CEEEECSSCTTEEEEECS---------------SS-CEEEEETTS----CEEEEEECC--S----SCSCCCCCEEEETTT
T ss_pred             EEEEEeCCCCCEEEEEeC---------------CC-EEEEeeccC----CceeEEecc--C----CCCccEEEEEECCCC
Confidence            8899998 6888887654               22 333343311    011100000  0    011234568999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCC------CceEeeEEe---eCce-e---cCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTA------HPVLVGQIF---LGGK-I---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~------~~~~v~~i~---~Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      ++|+++. .++.|.+||+....      +...+..+.   .+.. +   ..|++|.+||..............+.  .+.
T Consensus       222 ~~l~~g~-~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h--~~~  298 (435)
T 4e54_B          222 RMVVTGD-NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH--RHP  298 (435)
T ss_dssp             TEEEEEC-SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC--SSC
T ss_pred             CEEEEEe-CCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec--ccc
Confidence            9999888 68999999985311      111122221   2221 1   46788999986553211111111111  124


Q ss_pred             cceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        259 SQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      ...++|+|||++|++++.  .+.-|+
T Consensus       299 v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          299 VNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             EEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             ccceeECCCCCeeEEEcCCCEEEEEE
Confidence            688999999999999865  444444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.12  E-value=2.2e-09  Score=99.31  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=96.6

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      +.+..++|+| ++++|++++. +|+|++||+.+....    +.+..+. ++                             
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~-dg~v~vw~~~~~~~~~~~~~~~~~~~-~h-----------------------------  130 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSE-DCTVMVWEIPDGGLVLPLREPVITLE-GH-----------------------------  130 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEET-TSEEEEEECCTTCCSSCBCSCSEEEE-CC-----------------------------
T ss_pred             CCEEEEEeCCCCCCEEEEEeC-CCeEEEEEccCCCCccccCCceEEec-CC-----------------------------
Confidence            4678999999 8999988875 899999999764211    1111111 10                             


Q ss_pred             cCCCceEEEEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        108 FTGSSQMFQLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       108 ~g~gPr~vafsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                       ...+..++|+|+| +.|++++.               ++ .+.++++..   .+.+..+..   .    ........++
T Consensus       131 -~~~v~~~~~~p~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~---~----~~~~~v~~~~  183 (402)
T 2aq5_A          131 -TKRVGIVAWHPTAQNVLLSAGC---------------DN-VILVWDVGT---GAAVLTLGP---D----VHPDTIYSVD  183 (402)
T ss_dssp             -SSCEEEEEECSSBTTEEEEEET---------------TS-CEEEEETTT---TEEEEEECT---T----TCCSCEEEEE
T ss_pred             -CCeEEEEEECcCCCCEEEEEcC---------------CC-EEEEEECCC---CCccEEEec---C----CCCCceEEEE
Confidence             1467889999999 57776554               22 333344322   111221100   0    0124577899


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                      ++|||++|+++. .++.|.+||+..   .+.+..+..+..                             +..+..++|+|
T Consensus       184 ~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~~-----------------------------~~~~~~~~~~~  230 (402)
T 2aq5_A          184 WSRDGALICTSC-RDKRVRVIEPRK---GTVVAEKDRPHE-----------------------------GTRPVHAVFVS  230 (402)
T ss_dssp             ECTTSSCEEEEE-TTSEEEEEETTT---TEEEEEEECSSC-----------------------------SSSCCEEEECS
T ss_pred             ECCCCCEEEEEe-cCCcEEEEeCCC---CceeeeeccCCC-----------------------------CCcceEEEEcC
Confidence            999999999988 689999999854   344444322221                             11368899999


Q ss_pred             CCCEEEEE
Q psy11412        267 DGKRIYVS  274 (290)
Q Consensus       267 DG~~L~Va  274 (290)
                      ||++|+++
T Consensus       231 ~~~~l~~g  238 (402)
T 2aq5_A          231 EGKILTTG  238 (402)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEe
Confidence            99999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.12  E-value=2.2e-09  Score=92.78  Aligned_cols=152  Identities=14%  Similarity=0.025  Sum_probs=89.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....++++|||++|+.+...++.+.+|+++... .... .+...                               ...+.
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~-------------------------------~~~~~  176 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS-GVET-RLTHG-------------------------------EGRND  176 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-CCEE-ECCCS-------------------------------SSCEE
T ss_pred             CccceEECCCCCEEEEEECCCCceEEEEEECCC-Ccce-EcccC-------------------------------CCccc
Confidence            477899999999998665567889999874321 1111 11000                               14578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++|+|||++|+++....+.+.+               +....  ....+..+.         ........++|||||++
T Consensus       177 ~~~~s~dg~~l~~~~~~~~~~~i---------------~~~~~--~~~~~~~~~---------~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTGQMQI---------------WRVRV--DGSSVERIT---------DSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEE---------------EEEET--TSSCEEECC---------CCSEEEEEEEECTTSSE
T ss_pred             cceECCCCCEEEEEecCCCCccE---------------EEECC--CCCCcEEEe---------cCCcccCCeEECCCCCE
Confidence            89999999999887642221111               11110  000111100         01134567899999999


Q ss_pred             EEEEeCC----------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        194 LYTSNWM----------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       194 Lyvs~r~----------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      |+++...          ...|.+||+.. .....+.......                               +....++
T Consensus       231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~-------------------------------~~~~~~~  278 (297)
T 2ojh_A          231 VVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQ-------------------------------GTMNSPN  278 (297)
T ss_dssp             EEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEEST-------------------------------TTSCSCC
T ss_pred             EEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCC-------------------------------cccccce
Confidence            8876532          25699999853 2233333222111                               1467799


Q ss_pred             EccCCCEEEEEcC
Q psy11412        264 LSLDGKRIYVSSS  276 (290)
Q Consensus       264 ~sPDG~~L~Van~  276 (290)
                      |+|||++|++++.
T Consensus       279 ~spdg~~l~~~~~  291 (297)
T 2ojh_A          279 WSPDGDEFAYVRY  291 (297)
T ss_dssp             BCTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEe
Confidence            9999999998855

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.12  E-value=4.3e-09  Score=95.38  Aligned_cols=159  Identities=10%  Similarity=0.038  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++++|+  +|++++ .+++|++||+... ....+..+..++                    +         ....+
T Consensus        16 ~v~~~~~s~~--~las~~-~D~~i~lw~~~~~-~~~~~~~~~~~~--------------------h---------~~~v~   62 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGS-TDRKIKLVSVKYD-DFTLIDVLDETA--------------------H---------KKAIR   62 (330)
T ss_dssp             CEEEEEEETT--EEEEEE-SSSCEEEEECSSS-CCEEEEEECTTC--------------------C---------CSCEE
T ss_pred             ceeeeccCCC--EEEEEc-CCCEEEEEEecCC-CeEEEEEEecCC--------------------c---------cCCEE
Confidence            5778999998  676665 5899999999652 223332221110                    0         14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee----ecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI----QRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .++|+|+|++|++++.               ++ .+.+++.....    ....+..     ..+    .......++|||
T Consensus        63 ~v~~sp~~~~las~s~---------------D~-~v~iw~~~~~~~~~~~~~~~~~-----~~~----h~~~V~~v~~sp  117 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSF---------------DS-TVSIWAKEESADRTFEMDLLAI-----IEG----HENEVKGVAWSN  117 (330)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CEEEEEC-------CCCEEEEE-----EC--------CEEEEEECT
T ss_pred             EEEECCCCCEEEEEeC---------------CC-cEEEEEcccCcCccccceeEEE-----EcC----CCCcEEEEEECC
Confidence            8999999999988765               12 23333331100    0000110     011    124577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      ||++|+++. .+++|.+||+.... ..+.+..+. +.                              .+....++|+|||
T Consensus       118 ~g~~las~s-~D~~v~iwd~~~~~~~~~~~~~~~-~h------------------------------~~~v~~v~~~p~~  165 (330)
T 2hes_X          118 DGYYLATCS-RDKSVWIWETDESGEEYECISVLQ-EH------------------------------SQDVKHVIWHPSE  165 (330)
T ss_dssp             TSCEEEEEE-TTSCEEEEECCTTCCCCEEEEEEC-CC------------------------------SSCEEEEEECSSS
T ss_pred             CCCEEEEEe-CCCEEEEEeccCCCCCeEEEEEec-cC------------------------------CCceEEEEECCCC
Confidence            999999888 68999999995322 122222221 11                              1247889999999


Q ss_pred             CEEEEEcC--CCCCCC
Q psy11412        269 KRIYVSSS--LFSPWD  282 (290)
Q Consensus       269 ~~L~Van~--~~~~~~  282 (290)
                      ++|+++..  ...-|+
T Consensus       166 ~~l~s~s~D~~i~iW~  181 (330)
T 2hes_X          166 ALLASSSYDDTVRIWK  181 (330)
T ss_dssp             SEEEEEETTSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEE
Confidence            99998864  555564

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.11  E-value=3.5e-09  Score=97.51  Aligned_cols=219  Identities=13%  Similarity=0.178  Sum_probs=118.0

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCce---EE
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV---TV   88 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~---~v   88 (290)
                      -++.|+...+.....  ..-...+..++++|||++|++++. +++|++||+..   .+.+..+.....  ....+   .+
T Consensus       163 i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~---~~~~~~~~~~~~--~~~~v~~~~~  234 (420)
T 3vl1_A          163 LKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASL-DGTIRLWECGT---GTTIHTFNRKEN--PHDGVNSIAL  234 (420)
T ss_dssp             EEEEETTTCCCCEEE--ECCSSCEEEEEEETTTTEEEEEET-TSCEEEEETTT---TEEEEEECBTTB--TTCCEEEEEE
T ss_pred             EEEEeCCCCcCceEE--cCCCCcEEEEEEcCCCCEEEEEcC-CCcEEEeECCC---CceeEEeecCCC--CCCCccEEEE
Confidence            456666655443322  012346789999999999998775 78999999965   233333322100  01111   11


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                      .........        .........++|+|+|++|++.+.               ++ .+.+++...   .+.+.....
T Consensus       235 ~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~~  287 (420)
T 3vl1_A          235 FVGTDRQLH--------EISTSKKNNLEFGTYGKYVIAGHV---------------SG-VITVHNVFS---KEQTIQLPS  287 (420)
T ss_dssp             EECCCSSCG--------GGCCCCCCTTCSSCTTEEEEEEET---------------TS-CEEEEETTT---CCEEEEECC
T ss_pred             ecCCcceee--------ecccCcccceEEcCCCCEEEEEcC---------------CC-eEEEEECCC---CceeEEccc
Confidence            111100000        000134566889999999998765               22 333333321   111111110


Q ss_pred             cccCccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCCc-eEee----------EEeeCcee---cCCCce
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHP-VLVG----------QIFLGGKI---QSDSGV  233 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~----------~i~~Gg~~---~~~~~v  233 (290)
                              ........++|+|||+ +|+++. .++.|.+||+.....+ ..+.          ..+-+..+   ..|++|
T Consensus       288 --------~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v  358 (420)
T 3vl1_A          288 --------KFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSI  358 (420)
T ss_dssp             --------TTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEE
T ss_pred             --------ccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccE
Confidence                    0124577899999999 888887 7899999999654321 1111          11111111   567789


Q ss_pred             EEecCCCCCC------CCCcceeecccccCCcceEEEccCCC---EEEEEcC
Q psy11412        234 TVIDDPELDK------QPDPVIIKGRRFTGSSQMFQLSLDGK---RIYVSSS  276 (290)
Q Consensus       234 ~~~~~~~~~~------~~~~~~~~~~~~~~~P~~~a~sPDG~---~L~Van~  276 (290)
                      .+|+..+...      .+.+..+.+.  .+....++|+|||+   +|+++..
T Consensus       359 ~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          359 KLDIISDPESERPAIEFETPTFLVSN--DDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEEEECCTTCCSCEECTTSCEEECCS--SCCCCEEEEECCSSSSCEEEEEET
T ss_pred             EEEeccCCCCCccceeccCccEEccC--CcceEEEEEccCCCCcceEEEEcC
Confidence            9998654211      0111111111  23578999999999   5555543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.11  E-value=1.5e-10  Score=105.35  Aligned_cols=160  Identities=6%  Similarity=-0.128  Sum_probs=96.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|+++. .++.|++||+... ..+.+..+..+                               .....
T Consensus        13 ~v~~~~~s~~g~~l~~~~-~d~~i~iw~~~~~-~~~~~~~~~~h-------------------------------~~~v~   59 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTT-ATNQVELYEQDGN-GWKHARTFSDH-------------------------------DKIVT   59 (377)
T ss_dssp             CCSCCEECSSSSEEECCC-SSSCBCEEEEETT-EEEECCCBCCC-------------------------------SSCEE
T ss_pred             cEEEEEECCCCCEEEEec-CCCEEEEEEccCC-ceEEEEEEecC-------------------------------CceEE
Confidence            456789999999998765 4889999999652 11222211110                               14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               ++ .+.+++............     ..    ........++|+|||++
T Consensus        60 ~~~~s~~~~~l~s~s~---------------d~-~v~vwd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~~~~~  114 (377)
T 3dwl_C           60 CVDWAPKSNRIVTCSQ---------------DR-NAYVYEKRPDGTWKQTLV-----LL----RLNRAATFVRWSPNEDK  114 (377)
T ss_dssp             EEEECTTTCCEEEEET---------------TS-SEEEC------CCCCEEE-----CC----CCSSCEEEEECCTTSSC
T ss_pred             EEEEeCCCCEEEEEeC---------------CC-eEEEEEcCCCCceeeeeE-----ec----ccCCceEEEEECCCCCE
Confidence            8999999999998765               22 344444432100000110     00    11245788999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+........+..+..+.                              .+....++|+|||++|++
T Consensus       115 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h------------------------------~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C          115 FAVGS-GARVISVCYFEQENDWWVSKHLKRPL------------------------------RSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             CEEEE-SSSCEEECCC-----CCCCEEECSSC------------------------------CSCEEEEEECTTSSEEEE
T ss_pred             EEEEe-cCCeEEEEEECCcccceeeeEeeccc------------------------------CCCeEEEEEcCCCCEEEE
Confidence            99888 68899999985422111222221101                              125789999999999999


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      ++.  .+.-|+
T Consensus       164 ~~~d~~i~iwd  174 (377)
T 3dwl_C          164 GCADRKAYVLS  174 (377)
T ss_dssp             EESSSCEEEEE
T ss_pred             EeCCCEEEEEE
Confidence            865  455565

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=9.1e-10  Score=100.91  Aligned_cols=181  Identities=17%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             CceEEEEEcCCCCEEEEEeC---CCCeEEEEEcCCCCCceeeeEEeecc-cccCCCceEEecCCCCc-CCCCcceeeccc
Q psy11412         33 AMVTDILISLDDRYLYTSNW---MHGDIRQYDIRDTAHPVLVGQIFLGG-KIQSDSGVTVIDDPELD-KQPDPVIIKGRR  107 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~---~~g~V~v~dv~d~~~~~~~~~i~~g~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~  107 (290)
                      ..+.+++++|++.++|+++.   ..+.|.+||..+.. ...+  + .++ ...+.+....++...+. ..+.. ...  .
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~g-~~~--~  192 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARV--L-QGYPGIAPEDIDLVIDGVPVQIGQPDG-TVI--R  192 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEE--C-TTCTTTSCCSCCCEETTEECBEECTTS-CEE--C
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEE--e-cCCCcccccccceeECCEEEEeccCCC-cee--c
Confidence            36899999999889999998   78899999986422 1111  1 010 00000000000000000 00000 000  0


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeee-----eecccccccCccccCccccCCCCce
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEF-----IQRNEMRSMPLSSLGSWKYPARSMV  182 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~-----~~~~~i~~~p~~~~~~~~~~~~~~~  182 (290)
                      ...++.+|+|||||++||+++....               .+..++....     ...+....     +..  ......|
T Consensus       193 ~~~~~~gia~s~dg~~ly~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~g~~g~p  250 (343)
T 2qe8_A          193 PHLGVNGIVLDAENEWLYLSPMHST---------------SMYRIKSADLSNLQLTDAELGSK-----IER--YSEKPIC  250 (343)
T ss_dssp             CCCCEEEEEECTTSCEEEEEESSCS---------------EEEEEEHHHHTCTTCCHHHHHTT-----CEE--EEECCSC
T ss_pred             eecccceeEeccCCCEEEEEeCCCC---------------eEEEEEHHHhcCCCCChhhhhcc-----eEe--cccCCCC
Confidence            1146899999999999999876322               2211111000     00000000     000  0011245


Q ss_pred             eEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412        183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  262 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  262 (290)
                      .+|++++||+ ||+++..++.|.+||..+ ++...+...+  .                              ..+|.++
T Consensus       251 dgia~d~~G~-l~va~~~~~~V~~~d~~~-G~~~~~~~~~--~------------------------------~~~p~~v  296 (343)
T 2qe8_A          251 DGISIDKDHN-IYVGDLAHSAIGVITSAD-RAYKLLVTDE--K------------------------------LSWTDSF  296 (343)
T ss_dssp             SCEEECTTCC-EEEEEGGGTEEEEEETTT-TEEEEEEECG--G------------------------------GSCEEEE
T ss_pred             ceEEECCCCC-EEEEccCCCeEEEEECCC-CCEEEEEECC--c------------------------------eecCCee
Confidence            6799999985 799998999999998722 2211121111  0                              1279999


Q ss_pred             EEccCCCEEEEEcC
Q psy11412        263 QLSLDGKRIYVSSS  276 (290)
Q Consensus       263 a~sPDG~~L~Van~  276 (290)
                      +|+|||++++++++
T Consensus       297 a~~~~g~l~v~~~~  310 (343)
T 2qe8_A          297 NFGSDGYLYFDCNQ  310 (343)
T ss_dssp             EECTTSCEEEEECC
T ss_pred             EECCCCcEEEEeCc
Confidence            99999886555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=4.2e-09  Score=100.41  Aligned_cols=138  Identities=10%  Similarity=0.004  Sum_probs=82.7

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe----EEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD----IRQYDIRDTAHPVLVGQIFLGGKIQSDSG   85 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~----V~v~dv~d~~~~~~~~~i~~g~~~~~~~~   85 (290)
                      ..-.+||...+++....   .....|++|+++++|++||++++..+.    +.+++. + +.......+.          
T Consensus       159 ~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~-g~~~~~~~l~----------  223 (430)
T 3tc9_A          159 HPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E-SGFKVITELT----------  223 (430)
T ss_dssp             EEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G-GTSCSEEEEE----------
T ss_pred             CcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C-Cceeeeeeec----------
Confidence            34455666665554433   245589999999999999999986542    333332 1 1111111110          


Q ss_pred             eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412         86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS  165 (290)
Q Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  165 (290)
                                            ...+|++++++|++.+||+++...+               .+.+++...   . .+..
T Consensus       224 ----------------------~~~~p~giavdp~~g~lyv~d~~~~---------------~V~~~~~~~---~-~~~~  262 (430)
T 3tc9_A          224 ----------------------KGQNCNGAETHPINGELYFNSWNAG---------------QVFRYDFTT---Q-ETTP  262 (430)
T ss_dssp             ----------------------ECSSCCCEEECTTTCCEEEEETTTT---------------EEEEEETTT---T-EEEE
T ss_pred             ----------------------cCCCceEEEEeCCCCEEEEEECCCC---------------EEEEEECCC---C-cEEE
Confidence                                  0257999999996667998875222               222122110   0 0000


Q ss_pred             cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +.       ..+....|.+|+|+|||++||+++...+.|.+|+..
T Consensus       263 ~~-------~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          263 LF-------TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EE-------ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EE-------EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            00       011224678999999999999999999999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.10  E-value=4.2e-09  Score=96.08  Aligned_cols=190  Identities=11%  Similarity=0.118  Sum_probs=107.6

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCCeEEEEEc----CCCCCce---eeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         33 AMVTDILISLDDR-YLYTSNWMHGDIRQYDI----RDTAHPV---LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        33 ~~p~~va~SpDGr-~Lyva~~~~g~V~v~dv----~d~~~~~---~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      ..+..++|+|||+ +|++++. +|.|.+|++    .+....-   ....+..  ...                .+.   .
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~---~  103 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEK-NSVARLARIVETDQEGKKYWKLTIIAELRH--PFA----------------LSA---S  103 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEET-BTEEEEEEEEEC------CEEEEEEEEEEC--CCC----------------CC-----
T ss_pred             CceEEEEECCCCCcEEEEecC-CceEEEEEEecccCCccccccccccccccc--ccc----------------ccc---c
Confidence            3567899999999 9988875 799999999    6532100   1111100  000                000   0


Q ss_pred             ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                      ...-......++|+|+|++|+++..               ++ .+.+++. +   ...+..+.     .    .......
T Consensus       104 ~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg-~i~i~~~-~---~~~~~~~~-----~----~~~~v~~  154 (425)
T 1r5m_A          104 SGKTTNQVTCLAWSHDGNSIVTGVE---------------NG-ELRLWNK-T---GALLNVLN-----F----HRAPIVS  154 (425)
T ss_dssp             ----CBCEEEEEECTTSSEEEEEET---------------TS-CEEEEET-T---SCEEEEEC-----C----CCSCEEE
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEeC---------------CC-eEEEEeC-C---CCeeeecc-----C----CCccEEE
Confidence            0000136788999999999998765               22 2333331 1   11111100     0    1245778


Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC---------------------------cee---cCCCceE
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG---------------------------GKI---QSDSGVT  234 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G---------------------------g~~---~~~~~v~  234 (290)
                      ++|+|||++|+++. .++.|.+||+..   ...+..+...                           +.+   ..++.|.
T Consensus       155 ~~~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  230 (425)
T 1r5m_A          155 VKWNKDGTHIISMD-VENVTILWNVIS---GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF  230 (425)
T ss_dssp             EEECTTSSEEEEEE-TTCCEEEEETTT---TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred             EEECCCCCEEEEEe-cCCeEEEEECCC---CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Confidence            99999999999888 688999999954   2222222111                           111   3466788


Q ss_pred             EecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        235 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      +++.....  +. ..+.+.  .+....++|+|+|++|++++.  .+.-|+
T Consensus       231 ~~d~~~~~--~~-~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          231 VYQITEKT--PT-GKLIGH--HGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             EEETTCSS--CS-EEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             EEEcCCCc--ee-eeeccC--CCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            88865421  11 111111  134688999999999999874  444555

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.09  E-value=3.2e-09  Score=100.10  Aligned_cols=146  Identities=12%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             CceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         33 AMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        33 ~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ..+..++|+||   |++|++++. +++|++||+....   .+..+..++                              .
T Consensus       196 ~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~---~~~~~~~~h------------------------------~  241 (450)
T 2vdu_B          196 SMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCF---IVDKWLFGH------------------------------K  241 (450)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTT---CEEEECCCC------------------------------S
T ss_pred             CceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCc---eeeeeecCC------------------------------C
Confidence            46889999999   999988875 7899999996532   222211121                              1


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc------CccccCcc-ccCCCCce
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM------PLSSLGSW-KYPARSMV  182 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~------p~~~~~~~-~~~~~~~~  182 (290)
                      ..+.+++|+ ||++|++++.. +.+-+...    ..+..+..+...     ..+...      +......- ........
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d-~~v~vwd~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGD-DKIFAWDW----KTGKNLSTFDYN-----SLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESS-SEEEEEET----TTCCEEEEEECH-----HHHGGGCCTTSBC----------CBCCCE
T ss_pred             CceEEEEEC-CCCEEEEEeCC-CeEEEEEC----CCCcEeeeecch-----hhhhhhhhhcccccccccccccccceEEE
Confidence            467899999 99999987651 11111100    111111111100     000000      00000000 00011357


Q ss_pred             eEEEEccCCCEEEEEeCCCCcEEEEEe--cCCCCceEeeEEee
Q psy11412        183 TDILISLDDRYLYTSNWMHGDIRQYDI--RDTAHPVLVGQIFL  223 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv--~d~~~~~~v~~i~~  223 (290)
                      ..|+++|||++||++++.++.|.+||+  ........+..+..
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~  353 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF  353 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence            789999999999999988999999999  33233345555544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.09  E-value=3e-09  Score=110.26  Aligned_cols=176  Identities=11%  Similarity=0.095  Sum_probs=109.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|||||++|+++.. +|+|++|+...   .+....  ..+                              ....
T Consensus        18 ~~V~~lafspdg~~lAsgs~-Dg~I~lw~~~~---~~~~~~--~~~------------------------------~~~V   61 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATV-TGEVHIYGQQQ---VEVVIK--LED------------------------------RSAI   61 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TSEEEEECSTT---CEEEEE--CSS------------------------------CCCE
T ss_pred             CCcEEEEECCCCCEEEEEeC-CCEEEEEeCCC---cEEEEE--cCC------------------------------CCCE
Confidence            45789999999999998875 79999999753   222211  110                              1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+| |++|+.++.                ++.+.+|++..   .+.+..+          .....+..++|+|||+
T Consensus        62 ~~l~fsp-g~~L~S~s~----------------D~~v~lWd~~~---~~~~~~~----------~~~~~V~~v~~sp~g~  111 (902)
T 2oaj_A           62 KEMRFVK-GIYLVVINA----------------KDTVYVLSLYS---QKVLTTV----------FVPGKITSIDTDASLD  111 (902)
T ss_dssp             EEEEEET-TTEEEEEET----------------TCEEEEEETTT---CSEEEEE----------ECSSCEEEEECCTTCS
T ss_pred             EEEEEcC-CCEEEEEEC----------------cCeEEEEECCC---CcEEEEE----------cCCCCEEEEEECCCCC
Confidence            8899999 888887654                22444454422   1122211          1123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCce----------------------Ee-------eEEeeCceecCCCceEEecCCCCCC
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPV----------------------LV-------GQIFLGGKIQSDSGVTVIDDPELDK  243 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~----------------------~v-------~~i~~Gg~~~~~~~v~~~~~~~~~~  243 (290)
                      +|+++. .+++|.+||+... ...                      .+       ..+.+|   ..+++| +||......
T Consensus       112 ~l~sgs-~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g---~~dg~v-lWd~~~~~~  185 (902)
T 2oaj_A          112 WMLIGL-QNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS---YEYVTL-TYSLVENEI  185 (902)
T ss_dssp             EEEEEE-TTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE---CSSCEE-EEETTTTEE
T ss_pred             EEEEEc-CCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE---eCCCcE-EEECCCCce
Confidence            999998 6899999998532 110                      00       111122   357778 998765320


Q ss_pred             CCCcceeecc-----cc-----------cCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        244 QPDPVIIKGR-----RF-----------TGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       244 ~~~~~~~~~~-----~~-----------~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                        . ..+.+.     ..           .+....++|+|||++|++++.  .+.-||-
T Consensus       186 --~-~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          186 --K-QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             --E-EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             --E-EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence              0 001110     00           124789999999999999865  5566653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.09  E-value=4.9e-09  Score=97.55  Aligned_cols=90  Identities=10%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             ceeEEEEc-cCCCEEEEEeCCCCcEEEEEecCCCCceEe----------------eEEe-------------eCcee---
Q psy11412        181 MVTDILIS-LDDRYLYTSNWMHGDIRQYDIRDTAHPVLV----------------GQIF-------------LGGKI---  227 (290)
Q Consensus       181 ~~~~i~~S-pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v----------------~~i~-------------~Gg~~---  227 (290)
                      ....+.++ |||+.|+... .+++|.+||+........+                ....             .++.+   
T Consensus       256 ~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SCSEEEEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             cceeeeeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            45567776 8999999887 6889999998531111100                0000             00101   


Q ss_pred             -cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        228 -QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       228 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                       ..|++|++||.....  +.... .+.  ....+.++|||||++|+++..
T Consensus       335 gs~Dg~V~lwd~~~~~--~~~~~-~~~--~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKD--SNSIP-IQL--GMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ETTTTEEEEEETTCTT--CCEEE-EEC--SSCEEEEEECTTSSEEEEEES
T ss_pred             ECCCCEEEEEECCCCc--EEEEe-cCC--CCcEEEEEEcCCCCEEEEEeC
Confidence             357889999865421  11111 111  234799999999999999965

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.09  E-value=2.1e-09  Score=100.99  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++-|+..+...............+.++++|||++|++++ .+|.|.+||++.    +.+..+. ++              
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~~wd~~~----~~~~~~~-~h--------------  249 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-NVGNVILLNMDG----KELWNLR-MH--------------  249 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-SSSBEEEEESSS----CBCCCSB-CC--------------
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-CCCcEeeeccCc----ceeEEEe-cc--------------
Confidence            444555443322221122334567899999999998776 489999999853    1111111 10              


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++|+|+++.++++...              + +.+.++++...   .....+..    
T Consensus       250 ----------------~~~v~~v~~~p~~~~~~~s~s~--------------d-~~v~iwd~~~~---~~~~~~~~----  291 (435)
T 4e54_B          250 ----------------KKKVTHVALNPCCDWFLATASV--------------D-QTVKIWDLRQV---RGKASFLY----  291 (435)
T ss_dssp             ----------------SSCEEEEEECTTCSSEEEEEET--------------T-SBCCEEETTTC---CSSSCCSB----
T ss_pred             ----------------cceEEeeeecCCCceEEEEecC--------------c-ceeeEEecccc---cccceEEE----
Confidence                            1457889999999866554431              1 23333333211   00100000    


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                        .......+..++|||||++|+++. .+++|.+||+.+
T Consensus       292 --~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~  327 (435)
T 4e54_B          292 --SLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ  327 (435)
T ss_dssp             --CCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS
T ss_pred             --eeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC
Confidence              001124577899999999999888 689999999964

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.08  E-value=3.3e-09  Score=96.85  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..++++|+| +|+++. .+|.|.+||+..   .+.+..+....                   .+      ......
T Consensus       186 ~~~i~~~~~~~~~-~l~~~~-~dg~i~i~d~~~---~~~~~~~~~~~-------------------~h------~~~~~~  235 (397)
T 1sq9_A          186 SQFATSVDISERG-LIATGF-NNGTVQISELST---LRPLYNFESQH-------------------SM------INNSNS  235 (397)
T ss_dssp             CCCCCEEEECTTS-EEEEEC-TTSEEEEEETTT---TEEEEEEECCC----------------------------CCCCC
T ss_pred             CCCceEEEECCCc-eEEEEe-CCCcEEEEECCC---CceeEEEeccc-------------------cc------cccCCc
Confidence            4467899999999 776655 589999999965   23333222100                   00      000146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc-----ccCccccCCCCceeEEE
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS-----SLGSWKYPARSMVTDIL  186 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~-----~~~~~~~~~~~~~~~i~  186 (290)
                      +..++|+|+|++|++++....             .+.+.+++...   .+.+..+...     .... ..........++
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~-------------~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~  298 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNS-------------FGCITLYETEF---GERIGSLSVPTHSSQASLG-EFAHSSWVMSLS  298 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETT-------------EEEEEEEETTT---CCEEEEECBC--------C-CBSBSSCEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCC-------------CceEEEEECCC---CcccceeccCccccccccc-ccccCCcEEEEE
Confidence            788999999999998765100             01222233211   1111111100     0000 000124577899


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF  222 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~  222 (290)
                      |+|||++|+++. .++.|.+||+..   .+.+..+.
T Consensus       299 ~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~  330 (397)
T 1sq9_A          299 FNDSGETLCSAG-WDGKLRFWDVKT---KERITTLN  330 (397)
T ss_dssp             ECSSSSEEEEEE-TTSEEEEEETTT---TEEEEEEE
T ss_pred             ECCCCCEEEEEe-CCCeEEEEEcCC---CceeEEEe
Confidence            999999999888 789999999954   45555554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.08  E-value=2.5e-08  Score=88.82  Aligned_cols=191  Identities=13%  Similarity=0.122  Sum_probs=109.0

Q ss_pred             CceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      +.+..++|+|+  |++|+++.. +++|++||+... ....+..+. ++                              ..
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~-D~~v~iWd~~~~-~~~~~~~~~-~h------------------------------~~  100 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSY-DGKVMIWKEENG-RWSQIAVHA-VH------------------------------SA  100 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEET-TTEEEEEEBSSS-CBCCCEEEC-CC------------------------------SS
T ss_pred             CCeEEEEecCCCcCCEEEEEcC-CCEEEEEEcCCC-ceEEEEEee-cC------------------------------CC
Confidence            35778999874  899987775 899999999753 111221111 10                              14


Q ss_pred             CceEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        111 SSQMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       111 gPr~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      ..+.++|+|+  |++|++++.               ++ .+.+++...   .....  . ....+    .......++|+
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~---------------d~-~v~~wd~~~---~~~~~--~-~~~~~----h~~~v~~~~~~  154 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASS---------------DG-KVSVVEFKE---NGTTS--P-IIIDA----HAIGVNSASWA  154 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEET---------------TS-EEEEEEBCS---SSCBC--C-EEEEC----CSSCEEEEEEC
T ss_pred             ceeEEEeCcCCCCcEEEEEEC---------------CC-cEEEEEecC---CCcee--e-eeeec----ccCccceEeec
Confidence            6788999998  888888765               22 333343321   10000  0 00000    12356778999


Q ss_pred             cC-------------CCEEEEEeCCCCcEEEEEecCCCCce-Ee----------eEE---eeC--ce-e---cCCCceEE
Q psy11412        189 LD-------------DRYLYTSNWMHGDIRQYDIRDTAHPV-LV----------GQI---FLG--GK-I---QSDSGVTV  235 (290)
Q Consensus       189 pD-------------Gr~Lyvs~r~~~~V~v~Dv~d~~~~~-~v----------~~i---~~G--g~-~---~~~~~v~~  235 (290)
                      |+             +++|+++. .+++|.+||+....... .+          ..+   +.+  +. +   +.|++|.+
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             CCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            97             57888777 68999999996432110 11          111   111  11 1   56888999


Q ss_pred             ecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        236 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      |+............+......+....++|+|||++|++++.  ...-|+.
T Consensus       234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            98643211101111111112345788999999999998865  4555653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.08  E-value=2.8e-09  Score=98.53  Aligned_cols=188  Identities=13%  Similarity=0.138  Sum_probs=107.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|++++. +++|++||+...   +.+..+...                               .....
T Consensus        68 ~V~~~~~sp~~~~l~s~s~-D~~v~iWd~~~~---~~~~~~~~h-------------------------------~~~v~  112 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQ-DGRLIVWNALTS---QKTHAIKLH-------------------------------CPWVM  112 (380)
T ss_dssp             CEEEEEECTTSSCEEEEET-TSEEEEEETTTT---EEEEEEECC-------------------------------CTTCC
T ss_pred             EEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---ccceEEecC-------------------------------CCCEE
Confidence            5789999999999998875 899999998652   333322221                               13466


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDGr  192 (290)
                      .++|+|+|++|++.+.               ++ .+.++++......  ....+...    .+.+ ......+.|+|++.
T Consensus       113 ~~~~s~~g~~las~~~---------------d~-~v~iw~~~~~~~~--~~~~~~~~----~~~gh~~~v~~~~~~~~~~  170 (380)
T 3iz6_a          113 ECAFAPNGQSVACGGL---------------DS-ACSIFNLSSQADR--DGNMPVSR----VLTGHKGYASSCQYVPDQE  170 (380)
T ss_dssp             CCEECTTSSEEEECCS---------------SS-CCEEEECCCCSSC--CCSSTTCC----BCCCCSSCCCCCBCCSSSS
T ss_pred             EEEECCCCCEEEEeeC---------------CC-cEEEEECCCCccc--cCCcccee----eccCCCcceEEEEEecCCC
Confidence            7999999999987544               11 2222332110000  00000000    0111 13456688899754


Q ss_pred             -EEEEEeCCCCcEEEEEecCCCCceE------------eeEEee---Cce-e---cCCCceEEecCCCCCCCCCcceeec
Q psy11412        193 -YLYTSNWMHGDIRQYDIRDTAHPVL------------VGQIFL---GGK-I---QSDSGVTVIDDPELDKQPDPVIIKG  252 (290)
Q Consensus       193 -~Lyvs~r~~~~V~v~Dv~d~~~~~~------------v~~i~~---Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~  252 (290)
                       .|+++. .+++|.+||+........            +..+..   .+. +   ..|++|.+||..... .+ ...+.|
T Consensus       171 ~~l~s~s-~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~-~~~~~~  247 (380)
T 3iz6_a          171 TRLITGS-GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RA-VRTYHG  247 (380)
T ss_dssp             SCEEEEC-TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CC-CEEECC
T ss_pred             CEEEEEC-CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cc-eEEECC
Confidence             566665 789999999854211110            111110   111 1   568889999865311 11 112222


Q ss_pred             ccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      ..  +....++|+|||++|++++.  ...-||-
T Consensus       248 h~--~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          248 HE--GDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             CS--SCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             cC--CCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence            22  35789999999999999875  5556653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4e-09  Score=96.20  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=81.9

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      .+.|+...+.....  ..-...+..++++|++++|++++. ++.|.+||+....   .+..+...               
T Consensus       230 ~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~---~~~~~~~~---------------  288 (425)
T 1r5m_A          230 FVYQITEKTPTGKL--IGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGGNGN---SQNCFYGH---------------  288 (425)
T ss_dssp             EEEETTCSSCSEEE--CCCSSCEEEEEEETTTTEEEEEET-TSCEEEECSSSBS---CSEEECCC---------------
T ss_pred             EEEEcCCCceeeee--ccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc---cceEecCC---------------
Confidence            45555554433222  012346789999999999998875 7899999987532   12111110               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++|+|+| ++++.+.                ++.+.+++...   .+.+....     
T Consensus       289 ----------------~~~i~~~~~~~~~-~l~~~~~----------------d~~i~i~d~~~---~~~~~~~~-----  327 (425)
T 1r5m_A          289 ----------------SQSIVSASWVGDD-KVISCSM----------------DGSVRLWSLKQ---NTLLALSI-----  327 (425)
T ss_dssp             ----------------SSCEEEEEEETTT-EEEEEET----------------TSEEEEEETTT---TEEEEEEE-----
T ss_pred             ----------------CccEEEEEECCCC-EEEEEeC----------------CCcEEEEECCC---CcEeEecc-----
Confidence                            1467889999999 6666544                12333333321   11111100     


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                          .....+..++|+|||++|+++. .++.|.+||+..
T Consensus       328 ----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~  361 (425)
T 1r5m_A          328 ----VDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKK  361 (425)
T ss_dssp             ----CTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHH
T ss_pred             ----cCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Confidence                0123567899999999999988 688999999953

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.08  E-value=7.3e-09  Score=93.34  Aligned_cols=62  Identities=11%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      +++..|.+++++++|+ ||+++...+.|..||...  .  ....+..                                +
T Consensus        29 p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~--~~~~~~~--------------------------------~   71 (306)
T 2p4o_A           29 PVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG--N--QQIHATV--------------------------------E   71 (306)
T ss_dssp             CTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC--C--EEEEEEC--------------------------------S
T ss_pred             CCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCC--c--eEEEEeC--------------------------------C
Confidence            4567899999999998 899998889998887532  1  2211111                                1


Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      ..|.++++++||+ |||++.
T Consensus        72 ~~p~gia~~~dG~-l~vad~   90 (306)
T 2p4o_A           72 GKVSGLAFTSNGD-LVATGW   90 (306)
T ss_dssp             SEEEEEEECTTSC-EEEEEE
T ss_pred             CCceeEEEcCCCc-EEEEec
Confidence            4688899999998 787763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.08  E-value=3.6e-09  Score=97.04  Aligned_cols=153  Identities=12%  Similarity=0.147  Sum_probs=97.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|++++|++++. +++|++||+...   +.+..+..+                               .....
T Consensus       156 ~v~~~~~~~~~~~l~t~s~-D~~v~lwd~~~~---~~~~~~~~h-------------------------------~~~v~  200 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASG-DGTCALWDVESG---QLLQSFHGH-------------------------------GADVL  200 (354)
T ss_dssp             CEEEEEECSSSSEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred             cEEEEEEeCCCCEEEEEeC-CCcEEEEeCCCC---eEEEEEcCC-------------------------------CCCeE
Confidence            5678999999999998875 899999999653   333322111                               13456


Q ss_pred             EEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        114 MFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       114 ~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      .++|+|  +|++|+..+.               ++ .+.+|+...   .+.+...     .+    .......++|+|||
T Consensus       201 ~~~~~~~~~g~~l~sgs~---------------Dg-~v~~wd~~~---~~~~~~~-----~~----h~~~v~~v~~~p~~  252 (354)
T 2pbi_B          201 CLDLAPSETGNTFVSGGC---------------DK-KAMVWDMRS---GQCVQAF-----ET----HESDVNSVRYYPSG  252 (354)
T ss_dssp             EEEECCCSSCCEEEEEET---------------TS-CEEEEETTT---CCEEEEE-----CC----CSSCEEEEEECTTS
T ss_pred             EEEEEeCCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEe-----cC----CCCCeEEEEEeCCC
Confidence            678877  5788888765               22 333344322   1111110     01    12457789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      +.|+++. .+++|.+||+..   .+.+..+.....                             ......++|+|||++|
T Consensus       253 ~~l~s~s-~D~~v~lwd~~~---~~~~~~~~~~~~-----------------------------~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          253 DAFASGS-DDATCRLYDLRA---DREVAIYSKESI-----------------------------IFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SEEEEEE-TTSCEEEEETTT---TEEEEEECCTTC-----------------------------CSCEEEEEECTTSSEE
T ss_pred             CEEEEEe-CCCeEEEEECCC---CcEEEEEcCCCc-----------------------------ccceeEEEEeCCCCEE
Confidence            9999888 689999999853   222222211110                             0135789999999999


Q ss_pred             EEEcC--CCCCCC
Q psy11412        272 YVSSS--LFSPWD  282 (290)
Q Consensus       272 ~Van~--~~~~~~  282 (290)
                      +++..  .+.-||
T Consensus       300 ~~g~~d~~i~vwd  312 (354)
T 2pbi_B          300 FAGYNDYTINVWD  312 (354)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEEECCCcEEEEE
Confidence            99865  455555

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.08  E-value=2.5e-09  Score=101.09  Aligned_cols=142  Identities=14%  Similarity=0.162  Sum_probs=82.7

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC-eEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g-~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      -.++|...+++....   .....|+ ++++|+|++||+++...+ .|.+|+......+..+.....              
T Consensus       154 I~~id~~~g~~~~~~---~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~--------------  215 (409)
T 3hrp_A          154 VRLISVDDNKVTTVH---PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS--------------  215 (409)
T ss_dssp             EEEEETTTTEEEEEE---ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT--------------
T ss_pred             EEEEECCCCEEEEee---ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc--------------
Confidence            345566555554433   2244677 999999999999998554 888888754322222211100              


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                      ..+..|++++|+|++.+||++.. .+               .+..++..... ...+.....  
T Consensus       216 ----------------~~~~~p~~iav~p~~g~lyv~d~-~~---------------~I~~~d~~~~~-~~~~~~~~~--  260 (409)
T 3hrp_A          216 ----------------TFSGKIGAVALDETEEWLYFVDS-NK---------------NFGRFNVKTQE-VTLIKQLEL--  260 (409)
T ss_dssp             ----------------TSCSCCCBCEECTTSSEEEEECT-TC---------------EEEEEETTTCC-EEEEEECCC--
T ss_pred             ----------------hhcCCcEEEEEeCCCCeEEEEEC-CC---------------cEEEEECCCCC-EEEEecccc--
Confidence                            01267999999998888998543 11               11111111000 000000000  


Q ss_pred             cCccccCCCCcee-EEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        171 LGSWKYPARSMVT-DILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       171 ~~~~~~~~~~~~~-~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                       .+   .....|. +|+|+|++.+||+++..++.|..|+..
T Consensus       261 -~g---~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          261 -SG---SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             -CS---CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             -cC---CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence             00   0112245 899999989999999999999999763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.07  E-value=4.3e-09  Score=98.73  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=99.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.++++++.+.+||+++...+.|..++... ...+.+  +..+                               -..
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~--~~~~-------------------------------~~~  160 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEV--VSTG-------------------------------LES  160 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEE--ECSS-------------------------------CSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEE--EeCC-------------------------------CCC
Confidence            347999999999999999999899999998753 221111  1011                               147


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |.++++++.++.||+++...+.+.+...     ++...           ..+.       .    ..-..|.+|+++|++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~-----dg~~~-----------~~l~-------~----~~l~~P~giavdp~~  213 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANL-----DGAHR-----------KVLL-------W----QSLEKPRAIALHPME  213 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBT-----TSCSC-----------EEEE-------C----SSCSCEEEEEEETTT
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeC-----CCCce-----------EEee-------c----CCCCCCcEEEEEcCC
Confidence            8899999999999998763322221110     11100           0000       0    011468899999999


Q ss_pred             CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ++||+++++. +.|..++..- ...+.+.  ..+.                               .+|++++|+|++++
T Consensus       214 g~ly~td~~~~~~I~r~~~dG-~~~~~~~--~~~~-------------------------------~~PnGlavd~~~~~  259 (386)
T 3v65_B          214 GTIYWTDWGNTPRIEASSMDG-SGRRIIA--DTHL-------------------------------FWPNGLTIDYAGRR  259 (386)
T ss_dssp             TEEEEEECSSSCEEEEEETTS-CSCEEEE--CSSC-------------------------------SCEEEEEEEGGGTE
T ss_pred             CeEEEeccCCCCEEEEEeCCC-CCcEEEE--ECCC-------------------------------CCeeeEEEeCCCCE
Confidence            9999999988 8898888742 1111111  1111                               26999999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       260 lY~aD~  265 (386)
T 3v65_B          260 MYWVDA  265 (386)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999976

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.07  E-value=7.2e-09  Score=94.70  Aligned_cols=175  Identities=10%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      ++.++...+.....-...-...+..++|+| ++++|++++. ++.|++||+..    ..+..+....             
T Consensus        99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~----~~~~~~~~~~-------------  160 (383)
T 3ei3_B           99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-RGATTLRDFSG----SVIQVFAKTD-------------  160 (383)
T ss_dssp             EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-TTEEEEEETTS----CEEEEEECCC-------------
T ss_pred             EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-CCEEEEEECCC----CceEEEeccC-------------
Confidence            455665444333220011345788999999 6788887765 89999999963    1122111110             


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                     ........++|+|++++|++++.               + +.+..++..    .+.+..+.    
T Consensus       161 ---------------~~~~~v~~~~~~~~~~~l~~~~~---------------d-~~i~i~d~~----~~~~~~~~----  201 (383)
T 3ei3_B          161 ---------------SWDYWYCCVDVSVSRQMLATGDS---------------T-GRLLLLGLD----GHEIFKEK----  201 (383)
T ss_dssp             ---------------CSSCCEEEEEEETTTTEEEEEET---------------T-SEEEEEETT----SCEEEEEE----
T ss_pred             ---------------CCCCCeEEEEECCCCCEEEEECC---------------C-CCEEEEECC----CCEEEEec----
Confidence                           00145788999999999998765               2 234334431    11111100    


Q ss_pred             CccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCC-ceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412        172 GSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~-~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                       +    .......++|+|||+ +|+++. .++.|.+||+..... ...+....-.                         
T Consensus       202 -~----h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-------------------------  250 (383)
T 3ei3_B          202 -L----HKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEMPHE-------------------------  250 (383)
T ss_dssp             -C----SSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEEECS-------------------------
T ss_pred             -c----CCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEecCC-------------------------
Confidence             0    124577899999999 777776 689999999964221 2233322111                         


Q ss_pred             eecccccCCcceEEEcc-CCCEEEEEcC--CCCCCC
Q psy11412        250 IKGRRFTGSSQMFQLSL-DGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sP-DG~~L~Van~--~~~~~~  282 (290)
                             +....++|+| ||++|++++.  .+.-|+
T Consensus       251 -------~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          251 -------KPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             -------SCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             -------CceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence                   2578899999 9999999875  444454

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.07  E-value=6.7e-10  Score=101.92  Aligned_cols=119  Identities=8%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             CCceEEEEEcCCCC-EEEEEeCCCC---eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         32 PAMVTDILISLDDR-YLYTSNWMHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        32 ~~~p~~va~SpDGr-~Lyva~~~~g---~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      ...+..++++|+|. +|+++. .++   .|++||+.....+  +..+..++                             
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~--~~~~~~~~-----------------------------  261 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATAT-GSDNDPSILIWDLRNANTP--LQTLNQGH-----------------------------  261 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC--SBCCCSCC-----------------------------
T ss_pred             CCceEEEEECCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC--cEEeecCc-----------------------------
Confidence            44688999999985 565554 466   9999999763221  11111010                             


Q ss_pred             cCCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        108 FTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       108 ~g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                       ...+..++|+| ++++|++.+.               ++ .+.+++...   .+.+..+.     +    .......++
T Consensus       262 -~~~v~~~~~s~~~~~~l~s~~~---------------dg-~v~~wd~~~---~~~~~~~~-----~----~~~~v~~~~  312 (416)
T 2pm9_A          262 -QKGILSLDWCHQDEHLLLSSGR---------------DN-TVLLWNPES---AEQLSQFP-----A----RGNWCFKTK  312 (416)
T ss_dssp             -SSCEEEEEECSSCSSCEEEEES---------------SS-EEEEECSSS---CCEEEEEE-----C----SSSCCCCEE
T ss_pred             -cCceeEEEeCCCCCCeEEEEeC---------------CC-CEEEeeCCC---Cccceeec-----C----CCCceEEEE
Confidence             14678899999 9999988765               22 333344322   11222111     0    123456799


Q ss_pred             EccCC-CEEEEEeCCCCcEEEEEecCC
Q psy11412        187 ISLDD-RYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       187 ~SpDG-r~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      |+||| ++|+++. .++.|.+||+...
T Consensus       313 ~s~~~~~~l~s~~-~d~~i~iw~~~~~  338 (416)
T 2pm9_A          313 FAPEAPDLFACAS-FDNKIEVQTLQNL  338 (416)
T ss_dssp             ECTTCTTEEEECC-SSSEEEEEESCCC
T ss_pred             ECCCCCCEEEEEe-cCCcEEEEEccCC
Confidence            99999 6766665 6899999999653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.06  E-value=8.3e-09  Score=96.55  Aligned_cols=153  Identities=14%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+|+|++|++++. +++|++||+...   ..+..+. ++                              ....
T Consensus       193 ~~V~~v~~~p~~~~l~s~s~-D~~i~~wd~~~~---~~~~~~~-~h------------------------------~~~v  237 (410)
T 1vyh_C          193 HNVSSVSIMPNGDHIVSASR-DKTIKMWEVQTG---YCVKTFT-GH------------------------------REWV  237 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TSEEEEEETTTC---CEEEEEE-CC------------------------------SSCE
T ss_pred             CCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC---cEEEEEe-CC------------------------------CccE
Confidence            36789999999999988775 899999999753   2332221 11                              1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC--
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD--  190 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD--  190 (290)
                      +.+.|+|||+++++++.               ++ .+.+|+...   ......+     .+    .......++|+|+  
T Consensus       238 ~~~~~~~~g~~l~s~s~---------------D~-~v~vwd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~  289 (410)
T 1vyh_C          238 RMVRPNQDGTLIASCSN---------------DQ-TVRVWVVAT---KECKAEL-----RE----HRHVVECISWAPESS  289 (410)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---CCEEEEE-----CC----CSSCEEEEEECCSCG
T ss_pred             EEEEECCCCCEEEEEcC---------------CC-eEEEEECCC---CceeeEe-----cC----CCceEEEEEEcCccc
Confidence            88999999999988765               22 333333321   1111100     00    1234566788886  


Q ss_pred             ------------------CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeec
Q psy11412        191 ------------------DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKG  252 (290)
Q Consensus       191 ------------------Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (290)
                                        |++|+++. .+++|.+||+..   ...+..+. |.                           
T Consensus       290 ~~~~~~~~~~~~~~~~~~g~~l~sgs-~D~~i~iwd~~~---~~~~~~~~-~h---------------------------  337 (410)
T 1vyh_C          290 YSSISEATGSETKKSGKPGPFLLSGS-RDKTIKMWDVST---GMCLMTLV-GH---------------------------  337 (410)
T ss_dssp             GGGGGGCCSCC-------CCEEEEEE-TTSEEEEEETTT---TEEEEEEE-CC---------------------------
T ss_pred             ccchhhhccccccccCCCCCEEEEEe-CCCeEEEEECCC---CceEEEEE-CC---------------------------
Confidence                              77888888 688999999853   33333332 22                           


Q ss_pred             ccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                         .+..+.++|+|+|++|+++..  .+.-||-
T Consensus       338 ---~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          338 ---DNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             ---SSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             ---CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence               125788999999999998865  4566654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.06  E-value=2e-09  Score=93.47  Aligned_cols=145  Identities=10%  Similarity=0.121  Sum_probs=89.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.+++++|+|+ ||+++...+.|.+|+...   ...... ...                              ....|
T Consensus       108 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~---~~~~~~-~~~------------------------------~~~~p  152 (270)
T 1rwi_B          108 NYPEGLAVDTQGA-VYVADRGNNRVVKLAAGS---KTQTVL-PFT------------------------------GLNDP  152 (270)
T ss_dssp             SSEEEEEECTTCC-EEEEEGGGTEEEEECTTC---CSCEEC-CCC------------------------------SCCSC
T ss_pred             CCCcceEECCCCC-EEEEECCCCEEEEEECCC---ceeEee-ccc------------------------------cCCCc
Confidence            4799999999997 888988788999996422   111100 000                              01468


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++|+++|+|+ +|+++...+               .+..++...   ..... ..        ......+.+|++++|| 
T Consensus       153 ~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~~~---~~~~~-~~--------~~~~~~p~~i~~d~~g-  203 (270)
T 1rwi_B          153 DGVAVDNSGN-VYVTDTDNN---------------RVVKLEAES---NNQVV-LP--------FTDITAPWGIAVDEAG-  203 (270)
T ss_dssp             CCEEECTTCC-EEEEEGGGT---------------EEEEECTTT---CCEEE-CC--------CSSCCSEEEEEECTTC-
T ss_pred             eeEEEeCCCC-EEEEECCCC---------------EEEEEecCC---CceEe-ec--------ccCCCCceEEEECCCC-
Confidence            8999999998 888765211               222122110   00000 00        0011457889999999 


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      .||+++..++.|.+||....   .. ..+...+                              ...|..++++|||+ ||
T Consensus       204 ~l~v~~~~~~~v~~~~~~~~---~~-~~~~~~~------------------------------~~~p~~i~~~~~g~-l~  248 (270)
T 1rwi_B          204 TVYVTEHNTNQVVKLLAGST---TS-TVLPFTG------------------------------LNTPLAVAVDSDRT-VY  248 (270)
T ss_dssp             CEEEEETTTSCEEEECTTCS---CC-EECCCCS------------------------------CSCEEEEEECTTCC-EE
T ss_pred             CEEEEECCCCcEEEEcCCCC---cc-eeeccCC------------------------------CCCceeEEECCCCC-EE
Confidence            78999988899999986421   11 1111111                              02699999999997 88


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      +++.
T Consensus       249 v~~~  252 (270)
T 1rwi_B          249 VADR  252 (270)
T ss_dssp             EEEG
T ss_pred             EEEC
Confidence            8865

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.06  E-value=8e-09  Score=93.85  Aligned_cols=153  Identities=13%  Similarity=0.168  Sum_probs=96.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC-ceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~-~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..++|+|||++|++++. ++.|++|++..... ......+ .++                              ....
T Consensus        99 ~v~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~~~-~~h------------------------------~~~v  146 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGL-DNICSIYNLKTREGNVRVSREL-AGH------------------------------TGYL  146 (340)
T ss_dssp             CEEEEEECTTSSEEEEEET-TCEEEEEETTTCSBSCEEEEEE-ECC------------------------------SSCE
T ss_pred             cEEEEEECCCCCEEEEEeC-CCeEEEEECccCCCcceeEEEe-cCC------------------------------CccE
Confidence            5778999999999998875 79999999965321 1222211 111                              1346


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..+.|+++++ +++++.               ++ .+.++++..   .+.+..+     .+    .......++|+|||+
T Consensus       147 ~~~~~~~~~~-l~s~s~---------------d~-~i~~wd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~  197 (340)
T 1got_B          147 SCCRFLDDNQ-IVTSSG---------------DT-TCALWDIET---GQQTTTF-----TG----HTGDVMSLSLAPDTR  197 (340)
T ss_dssp             EEEEEEETTE-EEEEET---------------TS-CEEEEETTT---TEEEEEE-----CC----CSSCEEEEEECTTSS
T ss_pred             EEEEECCCCc-EEEEEC---------------CC-cEEEEECCC---CcEEEEE-----cC----CCCceEEEEECCCCC
Confidence            6789999987 444433               12 333344322   1111110     01    123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|+++. .+++|.+||+..   ...+..+. +.                              .+....++|+|+|++|+
T Consensus       198 ~l~sg~-~d~~v~~wd~~~---~~~~~~~~-~h------------------------------~~~v~~v~~~p~~~~l~  242 (340)
T 1got_B          198 LFVSGA-CDASAKLWDVRE---GMCRQTFT-GH------------------------------ESDINAICFFPNGNAFA  242 (340)
T ss_dssp             EEEEEE-TTSCEEEEETTT---CSEEEEEC-CC------------------------------SSCEEEEEECTTSSEEE
T ss_pred             EEEEEe-CCCcEEEEECCC---CeeEEEEc-CC------------------------------cCCEEEEEEcCCCCEEE
Confidence            998887 689999999854   22222221 11                              01478899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      +++.  ...-||
T Consensus       243 s~s~d~~v~iwd  254 (340)
T 1got_B          243 TGSDDATCRLFD  254 (340)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEcCCCcEEEEE
Confidence            9865  555565

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.05  E-value=9e-09  Score=95.38  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=98.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+.+..++++|||++|++++. ++.|++||+...   +.+..+...                               ...
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~---~~~~~~~~~-------------------------------~~~  261 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGN-DNVVQIWDARSS---IPKFTKTNH-------------------------------NAA  261 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSCEEEEETTCS---SEEEEECCC-------------------------------SSC
T ss_pred             CCCeeEEEEcCCCCEEEEEeC-CCeEEEccCCCC---CccEEecCC-------------------------------cce
Confidence            446889999999999998875 789999999752   222211111                               146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +..++|+|+++.++++....             ..+.+..++...   .+.+..          +........++++|||
T Consensus       262 v~~~~~~p~~~~ll~~~~gs-------------~d~~i~i~d~~~---~~~~~~----------~~~~~~v~~~~~s~~~  315 (401)
T 4aez_A          262 VKAVAWCPWQSNLLATGGGT-------------MDKQIHFWNAAT---GARVNT----------VDAGSQVTSLIWSPHS  315 (401)
T ss_dssp             CCEEEECTTSTTEEEEECCT-------------TTCEEEEEETTT---CCEEEE----------EECSSCEEEEEECSSS
T ss_pred             EEEEEECCCCCCEEEEecCC-------------CCCEEEEEECCC---CCEEEE----------EeCCCcEEEEEECCCC
Confidence            78899999998777764300             112333333321   111111          1122457789999999


Q ss_pred             CEEEEEe-CCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~-r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ++|+++. ..++.|.+||+... ....+..+. +.                              .+....++|+|||++
T Consensus       316 ~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~~-~h------------------------------~~~v~~~~~s~dg~~  363 (401)
T 4aez_A          316 KEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIP-AH------------------------------DTRVLYSALSPDGRI  363 (401)
T ss_dssp             SEEEEEECTTTCEEEEEEEETT-EEEEEEEEE-CC------------------------------SSCCCEEEECTTSSE
T ss_pred             CeEEEEeecCCCcEEEEecCCc-cceeEEEec-CC------------------------------CCCEEEEEECCCCCE
Confidence            9999864 35799999999642 111111111 11                              125788999999999


Q ss_pred             EEEEcC--CCCCCC
Q psy11412        271 IYVSSS--LFSPWD  282 (290)
Q Consensus       271 L~Van~--~~~~~~  282 (290)
                      |++++.  .+.-|+
T Consensus       364 l~s~~~dg~i~iw~  377 (401)
T 4aez_A          364 LSTAASDENLKFWR  377 (401)
T ss_dssp             EEEECTTSEEEEEE
T ss_pred             EEEEeCCCcEEEEE
Confidence            999865  344454

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.2e-09  Score=113.15  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ..+..|+||||| +|.++. .+++|.+||+..   +..+....+-. +.                      .|.  .+.+
T Consensus       576 ~~V~svafSpdG-~lAsgs-~D~tv~lwd~~~---~~~~~~~~~~~-~~----------------------~gh--~~~V  625 (902)
T 2oaj_A          576 GKTSAINNSNIG-FVGIAY-AAGSLMLIDRRG---PAIIYMENIRE-IS----------------------GAQ--SACV  625 (902)
T ss_dssp             CSEEEEEECBTS-EEEEEE-TTSEEEEEETTT---TEEEEEEEGGG-TC----------------------SSC--CCCE
T ss_pred             CcEEEEEecCCc-EEEEEe-CCCcEEEEECCC---CeEEEEeehhH-hc----------------------ccc--ccce
Confidence            467889999999 988888 689999999853   33433211100 00                      000  1258


Q ss_pred             ceEEEc-----cCC---CEEEEEcC--CCCCCC
Q psy11412        260 QMFQLS-----LDG---KRIYVSSS--LFSPWD  282 (290)
Q Consensus       260 ~~~a~s-----PDG---~~L~Van~--~~~~~~  282 (290)
                      ..++||     |||   ++|+++..  ....|+
T Consensus       626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             EEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            999999     986   88988855  555665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.6e-08  Score=92.71  Aligned_cols=186  Identities=8%  Similarity=0.062  Sum_probs=105.4

Q ss_pred             EEEEecCCCc---cCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceE
Q psy11412         12 DKVIDIPAKQ---VQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        12 ~~~~~~~~~~---~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~   87 (290)
                      -++.++...+   .....   .....+..++|+|||++|+++.. +|.|++|++...... +.+..+. ++         
T Consensus        47 v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~-~h---------  112 (416)
T 2pm9_A           47 LELWSLLAADSEKPIASL---QVDSKFNDLDWSHNNKIIAGALD-NGSLELYSTNEANNAINSMARFS-NH---------  112 (416)
T ss_dssp             CEEEESSSGGGCSCSCCC---CCSSCEEEEEECSSSSCEEEEES-SSCEEEECCSSTTSCCCEEEECC-CS---------
T ss_pred             EEEEEccCCCCCcEEEEE---ecCCceEEEEECCCCCeEEEEcc-CCeEEEeecccccccccchhhcc-CC---------
Confidence            3566666543   22222   23557889999999999988875 789999999752211 1222111 10         


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccC-CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc---cc
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD-GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN---EM  163 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPd-G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~---~i  163 (290)
                                           ......++|+|+ +++|++.+.               ++ .+.+++........   ..
T Consensus       113 ---------------------~~~v~~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A          113 ---------------------SSSVKTVKFNAKQDNVLASGGN---------------NG-EIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             ---------------------SSCCCEEEECSSSTTBEEEECS---------------SS-CEEBCBTTTTSSCTTTCCC
T ss_pred             ---------------------ccceEEEEEcCCCCCEEEEEcC---------------CC-eEEEEECCCCccccccccc
Confidence                                 146788999999 788887654               12 23333332210000   00


Q ss_pred             cccCccccCccccCCCCceeEEEEccC-CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412        164 RSMPLSSLGSWKYPARSMVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       164 ~~~p~~~~~~~~~~~~~~~~~i~~SpD-Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      ...  ...    .........++|+|| +++|+++. .++.|.+||+..   .+.+..+......               
T Consensus       156 ~~~--~~~----~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~~~---------------  210 (416)
T 2pm9_A          156 LTP--GQS----MSSVDEVISLAWNQSLAHVFASAG-SSNFASIWDLKA---KKEVIHLSYTSPN---------------  210 (416)
T ss_dssp             BCC--CCS----CCSSCCCCEEEECSSCTTEEEEES-SSSCEEEEETTT---TEEEEEECCCCCS---------------
T ss_pred             ccc--ccc----cCCCCCeeEEEeCCCCCcEEEEEc-CCCCEEEEECCC---CCcceEEeccccc---------------
Confidence            000  000    011235678999999 66766666 688999999854   3444443322100               


Q ss_pred             CCCCcceeecccccCCcceEEEccCC-CEEEEEcC-----CCCCCCc
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDG-KRIYVSSS-----LFSPWDK  283 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG-~~L~Van~-----~~~~~~~  283 (290)
                              .+.  ......++|+|+| ++|++++.     .+.-||-
T Consensus       211 --------~~~--~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          211 --------SGI--KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             --------SCC--CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             --------ccc--CCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence                    000  1257899999998 46666654     4555553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.05  E-value=1.3e-08  Score=89.61  Aligned_cols=122  Identities=15%  Similarity=0.126  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +.+..++|+|||++|++++. +|+|++||+...... +....+. ++                              ...
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~------------------------------~~~   59 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWR-AH------------------------------DSS   59 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEE-CC------------------------------SSC
T ss_pred             cceeEEEEcCCCCEEEEeeC-CCeEEEEECCCCCCcceecceec-cC------------------------------CCc
Confidence            35789999999999998875 899999999753322 2222221 11                              146


Q ss_pred             ceEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec------ccccccCccccCccccCCCCcee
Q psy11412        112 SQMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR------NEMRSMPLSSLGSWKYPARSMVT  183 (290)
Q Consensus       112 Pr~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~------~~i~~~p~~~~~~~~~~~~~~~~  183 (290)
                      ...++|+|  |+++|++++.               ++ .+.+++.......      +.+..     ..    .......
T Consensus        60 v~~~~~~~~~d~~~l~s~~~---------------dg-~v~vwd~~~~~~~~~~~~~~~~~~-----~~----~~~~~v~  114 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASASY---------------DK-TVKLWEEDPDQEECSGRRWNKLCT-----LN----DSKGSLY  114 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEET---------------TS-CEEEEEECTTSCTTSSCSEEEEEE-----EC----CCSSCEE
T ss_pred             EEEEEEcCCCCCCEEEEEcC---------------CC-eEEEEecCCCcccccccCcceeee-----ec----ccCCcee
Confidence            78899999  6999998765               12 3333443220000      00110     00    0124578


Q ss_pred             EEEEccC--CCEEEEEeCCCCcEEEEEecCC
Q psy11412        184 DILISLD--DRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       184 ~i~~SpD--Gr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      .++++|+  |++|+++. .++.|.+||+...
T Consensus       115 ~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~  144 (351)
T 3f3f_A          115 SVKFAPAHLGLKLACLG-NDGILRLYDALEP  144 (351)
T ss_dssp             EEEECCGGGCSEEEEEE-TTCEEEEEECSST
T ss_pred             EEEEcCCCCCcEEEEec-CCCcEEEecCCCh
Confidence            8999999  99999888 6899999998643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.05  E-value=7.8e-09  Score=95.67  Aligned_cols=149  Identities=11%  Similarity=0.095  Sum_probs=98.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.++++++.+..||+++...+.|..++.... ..+.+  +..+                               -..|
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~--~~~~-------------------------------~~~p  118 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEV--VSTG-------------------------------LESP  118 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEE--ECSS-------------------------------CSCC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCC-CceEE--EeCC-------------------------------CCCc
Confidence            468999999999999999998999999987532 22221  1011                               1478


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .++++++.++.||+++...+.+.+...     +|...           ..+.           ...-..|.+|+++|+++
T Consensus       119 ~glavd~~~g~ly~~d~~~~~I~~~~~-----dG~~~-----------~~l~-----------~~~l~~P~~iavdp~~g  171 (349)
T 3v64_C          119 GGLAVDWVHDKLYWTDSGTSRIEVANL-----DGAHR-----------KVLL-----------WQSLEKPRAIALHPMEG  171 (349)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE-----------CTTCSCEEEEEEETTTT
T ss_pred             cEEEEecCCCeEEEEcCCCCeEEEEcC-----CCCce-----------EEEE-----------eCCCCCcceEEEecCcC
Confidence            999999999999998763322221110     11100           0000           00124688999999999


Q ss_pred             EEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        193 YLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       193 ~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      +||+++++. +.|..++.+- ...+.+.  ..+.                               ..|++++|+|++++|
T Consensus       172 ~ly~td~~~~~~I~r~~~dG-~~~~~~~--~~~~-------------------------------~~PnGla~d~~~~~l  217 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDG-SGRRIIA--DTHL-------------------------------FWPNGLTIDYAGRRM  217 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTS-CSCEESC--CSSC-------------------------------SCEEEEEEETTTTEE
T ss_pred             eEEEeccCCCCEEEEEeCCC-CCcEEEE--ECCC-------------------------------CCcceEEEeCCCCEE
Confidence            999999988 8899888742 1111111  0111                               269999999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      |++..
T Consensus       218 Y~aD~  222 (349)
T 3v64_C          218 YWVDA  222 (349)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99976

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.04  E-value=9.3e-09  Score=91.99  Aligned_cols=128  Identities=9%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ++..|.+++++|||+ |+++.  .+.|.+||..+ +..+.+.....+                             ....
T Consensus        52 ~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~-g~~~~~~~~~~~-----------------------------~~~~   98 (297)
T 3g4e_A           52 MDAPVSSVALRQSGG-YVATI--GTKFCALNWKE-QSAVVLATVDND-----------------------------KKNN   98 (297)
T ss_dssp             CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTT-TEEEEEEECCTT-----------------------------CSSE
T ss_pred             CCCceEEEEECCCCC-EEEEE--CCeEEEEECCC-CcEEEEEecCCC-----------------------------CCCC
Confidence            466899999999999 66665  46899999754 222222111000                             0114


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .|+.++++|||+ +|+++...... .....   ...+.+..++.     ...+..+         ......+.+|+||||
T Consensus        99 ~~~di~~d~dG~-l~~~~~~~~~~-~~~~~---~~~~~l~~~d~-----~g~~~~~---------~~~~~~pngi~~spd  159 (297)
T 3g4e_A           99 RFNDGKVDPAGR-YFAGTMAEETA-PAVLE---RHQGALYSLFP-----DHHVKKY---------FDQVDISNGLDWSLD  159 (297)
T ss_dssp             EEEEEEECTTSC-EEEEEEECCSB-TTBCC---TTCEEEEEECT-----TSCEEEE---------EEEESBEEEEEECTT
T ss_pred             CCCCEEECCCCC-EEEecCCcccc-ccccc---CCCcEEEEEEC-----CCCEEEE---------eeccccccceEEcCC
Confidence            688999999999 66654210000 00000   00111111111     0000000         001135678999999


Q ss_pred             CCEEEEEeCCCCcEEEEEec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      |++||+++..++.|.+||+.
T Consensus       160 g~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEecCCCCcEEEEecc
Confidence            99999999888999999984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.04  E-value=6.5e-09  Score=104.11  Aligned_cols=147  Identities=10%  Similarity=0.090  Sum_probs=97.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|||||++|+++.. +|.|.+||+.+   .+.+..+...                               ....
T Consensus        14 ~~v~~i~~sp~~~~la~~~~-~g~v~iwd~~~---~~~~~~~~~~-------------------------------~~~v   58 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLY-SGRVEIWNYET---QVEVRSIQVT-------------------------------ETPV   58 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------SSCE
T ss_pred             CceEEEEECCCCCEEEEEeC-CCEEEEEECCC---CceEEEEecC-------------------------------CCcE
Confidence            35789999999999998875 78999999865   3333333211                               1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.++|+|||++|++++.               ++ .+.+++..+   .+.+..+.     +    .......++|||||+
T Consensus        59 ~~~~~s~~~~~l~~~~~---------------dg-~i~vw~~~~---~~~~~~~~-----~----~~~~v~~~~~s~~~~  110 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSD---------------DF-RIRVFNYNT---GEKVVDFE-----A----HPDYIRSIAVHPTKP  110 (814)
T ss_dssp             EEEEEEGGGTEEEEEET---------------TS-EEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSS
T ss_pred             EEEEEeCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEe-----c----CCCCEEEEEEeCCCC
Confidence            88999999999998765               12 333333321   11111100     0    124577899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRI  271 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L  271 (290)
                      +|+++. .++.|.+||+...  ......+ .+.                              .+....++|+| ||+.|
T Consensus       111 ~l~~~~-~dg~i~vw~~~~~--~~~~~~~-~~~------------------------------~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A          111 YVLSGS-DDLTVKLWNWENN--WALEQTF-EGH------------------------------EHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             EEEEEE-TTSEEEEEEGGGT--SEEEEEE-ECC------------------------------SSCEEEEEEETTEEEEE
T ss_pred             EEEEEc-CCCEEEEEECCCC--ceEEEEE-cCC------------------------------CCcEEEEEEEcCCCCEE
Confidence            999888 6889999999532  1222222 121                              01467899999 88888


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      ++++.
T Consensus       157 ~~~~~  161 (814)
T 3mkq_A          157 ASGCL  161 (814)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            88764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.04  E-value=1.5e-08  Score=90.58  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=74.8

Q ss_pred             ceEEEE----EcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDIL----ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va----~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ....++    ++|++++|+++.. +|.|.+||+...   +.......                                .
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~---~~~~~~~~--------------------------------~  209 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYD-NGDIKLFDLRNM---ALRWETNI--------------------------------K  209 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEET-TSEEEEEETTTT---EEEEEEEC--------------------------------S
T ss_pred             ceEEEEEEeccCCCCCEEEEEcc-CCeEEEEECccC---ceeeecCC--------------------------------C
Confidence            455666    7899999998875 789999999652   22211111                                1


Q ss_pred             CCceEEEEcc---CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        110 GSSQMFQLSL---DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       110 ~gPr~vafsP---dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                      .....++|+|   +++++++++.               ++ .+..++...   ...+.........    ........++
T Consensus       210 ~~v~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~~~~~~----~~~~~v~~~~  266 (357)
T 3i2n_A          210 NGVCSLEFDRKDISMNKLVATSL---------------EG-KFHVFDMRT---QHPTKGFASVSEK----AHKSTVWQVR  266 (357)
T ss_dssp             SCEEEEEESCSSSSCCEEEEEES---------------TT-EEEEEEEEE---EETTTEEEEEEEE----CCSSCEEEEE
T ss_pred             CceEEEEcCCCCCCCCEEEEECC---------------CC-eEEEEeCcC---CCcccceeeeccC----CCcCCEEEEE
Confidence            4678899999   9999998765               22 344444433   1111111100000    1224678899


Q ss_pred             EccCCC-EEEEEeCCCCcEEEEEecCC
Q psy11412        187 ISLDDR-YLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       187 ~SpDGr-~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ++|||+ +|+++. .++.|.+||+...
T Consensus       267 ~~~~~~~~l~~~~-~dg~i~iwd~~~~  292 (357)
T 3i2n_A          267 HLPQNRELFLTAG-GAGGLHLWKYEYP  292 (357)
T ss_dssp             EETTEEEEEEEEE-TTSEEEEEEEECC
T ss_pred             ECCCCCcEEEEEe-CCCcEEEeecCCC
Confidence            999999 566665 7899999999653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.03  E-value=1.7e-08  Score=89.93  Aligned_cols=118  Identities=10%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|||||++|++++. +++|++||+... ..+.+..+. ++                              .....
T Consensus        11 ~V~~~~~s~~g~~las~s~-D~~v~iw~~~~~-~~~~~~~l~-gH------------------------------~~~V~   57 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSS-DKTIKIFEVEGE-THKLIDTLT-GH------------------------------EGPVW   57 (297)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEEBCSS-CBCCCEEEC-CC------------------------------SSCEE
T ss_pred             ceEEEEECCCCCEEEEEeC-CCEEEEEecCCC-CcEEEEEEc-cc------------------------------cCCeE
Confidence            5789999999999998875 899999999642 222232221 11                              14567


Q ss_pred             EEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC-
Q psy11412        114 MFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD-  190 (290)
Q Consensus       114 ~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD-  190 (290)
                      .++|+|+  |++|+.++.               + +.+.+|++.... ...+..     ..+    ....+..++|+|+ 
T Consensus        58 ~v~~s~~~~g~~l~s~s~---------------D-~~v~iWd~~~~~-~~~~~~-----~~~----h~~~v~~v~~~p~~  111 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSY---------------D-GKVMIWKEENGR-WSQIAV-----HAV----HSASVNSVQWAPHE  111 (297)
T ss_dssp             EEEECCGGGCSEEEEEET---------------T-TEEEEEEBSSSC-BCCCEE-----ECC----CSSCEEEEEECCGG
T ss_pred             EEEecCCCcCCEEEEEcC---------------C-CEEEEEEcCCCc-eEEEEE-----eec----CCCceeEEEeCcCC
Confidence            8999864  888887664               2 244445542200 000110     000    1235778999998 


Q ss_pred             -CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 -DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 -Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                       |++|+++. .+++|.+||+..
T Consensus       112 ~g~~l~s~s-~d~~v~~wd~~~  132 (297)
T 2pm7_B          112 YGPMLLVAS-SDGKVSVVEFKE  132 (297)
T ss_dssp             GCSEEEEEE-TTSEEEEEEBCS
T ss_pred             CCcEEEEEE-CCCcEEEEEecC
Confidence             89998888 689999999964

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.03  E-value=1.1e-07  Score=87.97  Aligned_cols=101  Identities=12%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCc---------------eEeeEE---eeC-cee---cCCCceEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP---------------VLVGQI---FLG-GKI---QSDSGVTVID  237 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~---------------~~v~~i---~~G-g~~---~~~~~v~~~~  237 (290)
                      ..+..++|+|||++|+++  .++.|.+||+......               ..+..+   +.| ..+   ..|++|.+||
T Consensus       178 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            456789999999998876  5899999999621110               001111   112 111   5678899998


Q ss_pred             CCCCCCCC-Ccceeecccc----------cCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412        238 DPELDKQP-DPVIIKGRRF----------TGSSQMFQLSLDGKRIYVSSS-LFSPWD  282 (290)
Q Consensus       238 ~~~~~~~~-~~~~~~~~~~----------~~~P~~~a~sPDG~~L~Van~-~~~~~~  282 (290)
                      ........ ....+.+..-          .+....++|+|||++|++++. ...-||
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd  312 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWD  312 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEe
Confidence            76532100 0112222210          014689999999999998865 333444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.9e-08  Score=90.39  Aligned_cols=158  Identities=11%  Similarity=0.111  Sum_probs=96.5

Q ss_pred             CCceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         32 PAMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        32 ~~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ...+..++++|+  |++|+++.. ++.|.+||+......... .+ .++                              .
T Consensus       101 ~~~v~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~-~~-~~~------------------------------~  147 (379)
T 3jrp_A          101 SASVNSVQWAPHEYGPLLLVASS-DGKVSVVEFKENGTTSPI-II-DAH------------------------------A  147 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEET-TSEEEEEECCTTSCCCEE-EE-ECC------------------------------T
T ss_pred             CcceEEEEeCCCCCCCEEEEecC-CCcEEEEecCCCCceeeE-Ee-cCC------------------------------C
Confidence            346889999999  999988875 899999999764222211 11 110                              1


Q ss_pred             CCceEEEEcc-------------CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcccc
Q psy11412        110 GSSQMFQLSL-------------DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY  176 (290)
Q Consensus       110 ~gPr~vafsP-------------dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~  176 (290)
                      .....++|+|             +++++++++.               ++ .+.+++...   ........ ....+   
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~-~~~~~---  204 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA---------------DN-LVKIWKYNS---DAQTYVLE-STLEG---  204 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEET---------------TS-CEEEEEEET---TTTEEEEE-EEECC---
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeC---------------CC-eEEEEEecC---CCcceeeE-EEEec---
Confidence            4577899999             7998888765               22 333344322   11000000 00000   


Q ss_pred             CCCCceeEEEEccC---CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412        177 PARSMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       177 ~~~~~~~~i~~SpD---Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                       .......++|+||   |++|+++. .++.|.+||+.......... +....                            
T Consensus       205 -h~~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~----------------------------  253 (379)
T 3jrp_A          205 -HSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKT-LLKEE----------------------------  253 (379)
T ss_dssp             -CSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEE-ESSSS----------------------------
T ss_pred             -ccCcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCCccceee-eeccc----------------------------
Confidence             1245778999999   88888887 68999999996432211111 11100                            


Q ss_pred             cccCCcceEEEccCCCEEEEEcC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      ...+....++|+|||++|++++.
T Consensus       254 ~~~~~v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          254 KFPDVLWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             CCSSCEEEEEECSSSCCEEEEES
T ss_pred             cCCCcEEEEEEcCCCCEEEEecC
Confidence            00124688999999999998865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.5e-08  Score=89.62  Aligned_cols=119  Identities=9%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+|||++|++++. +|.|.+|++... ..+.+..+..+                               ....
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~-~~~~~~~~~~h-------------------------------~~~v   58 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGE-THKLIDTLTGH-------------------------------EGPV   58 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TSCEEEEEEETT-EEEEEEEECCC-------------------------------SSCE
T ss_pred             ccEEEEEEcCCCCEEEEEEC-CCcEEEEecCCC-cceeeeEecCC-------------------------------CCcE
Confidence            35789999999999998875 789999999642 23333222111                               1457


Q ss_pred             eEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+|+  +++|++++.               ++ .+.+|++..... ..+....         ........++|+|+
T Consensus        59 ~~~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~~~~-~~~~~~~---------~~~~~v~~~~~~~~  112 (379)
T 3jrp_A           59 WRVDWAHPKFGTILASCSY---------------DG-KVLIWKEENGRW-SQIAVHA---------VHSASVNSVQWAPH  112 (379)
T ss_dssp             EEEEECCGGGCSEEEEEET---------------TS-CEEEEEEETTEE-EEEEEEC---------CCSSCEEEEEECCG
T ss_pred             EEEEeCCCCCCCEEEEecc---------------CC-EEEEEEcCCCce-eEeeeec---------CCCcceEEEEeCCC
Confidence            88999988  999998765               22 344454432100 0111100         01245788999999


Q ss_pred             --CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 --DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 --Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                        |++|+++. .++.|.+||+..
T Consensus       113 ~~~~~l~~~~-~d~~i~v~d~~~  134 (379)
T 3jrp_A          113 EYGPLLLVAS-SDGKVSVVEFKE  134 (379)
T ss_dssp             GGCSEEEEEE-TTSEEEEEECCT
T ss_pred             CCCCEEEEec-CCCcEEEEecCC
Confidence              99999988 689999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.02  E-value=7.7e-09  Score=96.23  Aligned_cols=169  Identities=12%  Similarity=0.138  Sum_probs=98.6

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCC---CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRD---TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d---~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      +.+..++|+| ||++|++++. +|+|++||+..   ....+....  .++                              
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~--~~h------------------------------  110 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSD-QGVIKIWNLKEIIVGEVYSSSLT--YDC------------------------------  110 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEET-TSEEEEEEHHHHHTTCCCSCSEE--EEC------------------------------
T ss_pred             CceEEEEECCCCCCEEEEecC-CceEEEeECcccccCcccceeee--ccC------------------------------
Confidence            4688999999 9999988875 89999999864   211111111  110                              


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcccc-C--CCCceeEE
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY-P--ARSMVTDI  185 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~-~--~~~~~~~i  185 (290)
                      ...+..++|+|++++|++++.               + +.+.++++......+.+.......+....+ +  .......+
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~---------------d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  174 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSK---------------D-GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM  174 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEET---------------T-SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeC---------------C-CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEE
Confidence            146788999999999998765               1 233333332100000000000000000000 0  11233344


Q ss_pred             E--EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        186 L--ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       186 ~--~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      .  +++||++|+++. .++.|.+||+..   .+.+..+..-.                    +         .+....++
T Consensus       175 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~--------------------h---------~~~v~~~~  221 (437)
T 3gre_A          175 RAFVNEEKSLLVALT-NLSRVIIFDIRT---LERLQIIENSP--------------------R---------HGAVSSIC  221 (437)
T ss_dssp             EEEECSSCEEEEEEE-TTSEEEEEETTT---CCEEEEEECCG--------------------G---------GCCEEEEE
T ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCCC---CeeeEEEccCC--------------------C---------CCceEEEE
Confidence            4  779999999888 689999999954   33344332210                    0         12578899


Q ss_pred             EccCCCEEEEEcC--CCCCCCc
Q psy11412        264 LSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       264 ~sPDG~~L~Van~--~~~~~~~  283 (290)
                      |+|+|++|++++.  .+.-||-
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEET
T ss_pred             ECCCCCEEEEEcCCCeEEEEEc
Confidence            9999999999865  4555653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.02  E-value=2.3e-08  Score=92.66  Aligned_cols=191  Identities=12%  Similarity=0.086  Sum_probs=109.4

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc-c-----------
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK-I-----------   80 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~-~-----------   80 (290)
                      .+.++..++..... ...-...+..++++|||++|+++.. +|.|.+||+.+..   .+..+..... +           
T Consensus       116 ~lw~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~l~  190 (401)
T 4aez_A          116 YVWNADSGSVSALA-ETDESTYVASVKWSHDGSFLSVGLG-NGLVDIYDVESQT---KLRTMAGHQARVGCLSWNRHVLS  190 (401)
T ss_dssp             EEEETTTCCEEEEE-ECCTTCCEEEEEECTTSSEEEEEET-TSCEEEEETTTCC---EEEEECCCSSCEEEEEEETTEEE
T ss_pred             EEeeCCCCcEeEee-ecCCCCCEEEEEECCCCCEEEEECC-CCeEEEEECcCCe---EEEEecCCCCceEEEEECCCEEE
Confidence            44555554443332 1112446889999999999998875 7899999997532   2222211100 0           


Q ss_pred             --cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee
Q psy11412         81 --QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI  158 (290)
Q Consensus        81 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~  158 (290)
                        +..+.+.+.+.......  .....+.  ......++|+|+|++|++++.               ++ .+.+++...  
T Consensus       191 ~~~~dg~i~i~d~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~s~~~---------------d~-~v~iwd~~~--  248 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIANHQ--IGTLQGH--SSEVCGLAWRSDGLQLASGGN---------------DN-VVQIWDARS--  248 (401)
T ss_dssp             EEETTSEEEEEETTSSSCE--EEEEECC--SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEETTC--
T ss_pred             EEcCCCCEEEEecccCcce--eeEEcCC--CCCeeEEEEcCCCCEEEEEeC---------------CC-eEEEccCCC--
Confidence              01222333222110000  0001111  246788999999999998765               22 333344322  


Q ss_pred             ecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeC--CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEe
Q psy11412        159 QRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI  236 (290)
Q Consensus       159 ~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~  236 (290)
                       ...+....         ........++++|+|+.|+++.-  .++.|.+||+..   .+.+..+..++           
T Consensus       249 -~~~~~~~~---------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~~~-----------  304 (401)
T 4aez_A          249 -SIPKFTKT---------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAGS-----------  304 (401)
T ss_dssp             -SSEEEEEC---------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---CCEEEEEECSS-----------
T ss_pred             -CCccEEec---------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---CCEEEEEeCCC-----------
Confidence             11111100         01234678999999988888763  489999999864   34444444333           


Q ss_pred             cCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        237 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                                           ....++|+|+|+.|+++.
T Consensus       305 ---------------------~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          305 ---------------------QVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             ---------------------CEEEEEECSSSSEEEEEE
T ss_pred             ---------------------cEEEEEECCCCCeEEEEe
Confidence                                 578899999999999975

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.02  E-value=4.5e-09  Score=91.27  Aligned_cols=111  Identities=11%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             ceEEEEEcCCCCEEEE-EeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYT-SNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyv-a~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .|+++++++||+ ||+ ++..++.|.+|+.... .....   ...                              ....|
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~-~~~~~---~~~------------------------------~~~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGST-GTTVL---PFN------------------------------GLYQP   69 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC------EEC---CCC------------------------------SCCSC
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCc-ccceE---eeC------------------------------CcCCc
Confidence            899999999998 888 8777889999985321 11110   000                              01478


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++|+++++|+ ||+++. .+.               +..++...    .......        ......+.+|+++|||+
T Consensus        70 ~~i~~~~~g~-l~v~~~-~~~---------------i~~~d~~~----~~~~~~~--------~~~~~~p~~i~~~~~g~  120 (270)
T 1rwi_B           70 QGLAVDGAGT-VYVTDF-NNR---------------VVTLAAGS----NNQTVLP--------FDGLNYPEGLAVDTQGA  120 (270)
T ss_dssp             CCEEECTTCC-EEEEET-TTE---------------EEEECTTC----SCCEECC--------CCSCSSEEEEEECTTCC
T ss_pred             ceeEECCCCC-EEEEcC-CCE---------------EEEEeCCC----ceEeeee--------cCCcCCCcceEECCCCC
Confidence            8999999998 888764 221               11111100    0000000        01114578999999998


Q ss_pred             EEEEEeCCCCcEEEEEe
Q psy11412        193 YLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv  209 (290)
                       ||+++..++.|.+|+.
T Consensus       121 -l~v~~~~~~~i~~~~~  136 (270)
T 1rwi_B          121 -VYVADRGNNRVVKLAA  136 (270)
T ss_dssp             -EEEEEGGGTEEEEECT
T ss_pred             -EEEEECCCCEEEEEEC
Confidence             8999877888998853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.01  E-value=1.5e-08  Score=100.88  Aligned_cols=154  Identities=18%  Similarity=0.321  Sum_probs=97.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|+|||++|++++. +++|++||+...   ..+..+ .++                              .....
T Consensus       432 ~v~~v~~s~~g~~l~sgs~-Dg~v~vwd~~~~---~~~~~~-~~h------------------------------~~~v~  476 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSW-DGELRLWDLAAG---VSTRRF-VGH------------------------------TKDVL  476 (694)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEE-ECC------------------------------SSCEE
T ss_pred             cEEEEEECCCCCEEEEEeC-CCcEEEEECCCC---cceeEE-eCC------------------------------CCCEE
Confidence            5778999999999988875 899999999652   333222 121                              14578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC--
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD--  191 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG--  191 (290)
                      .++|+|+|++|+.++.               ++ .+.+|+...   ..... +... ..    ........++|+|++  
T Consensus       477 ~~~~s~~~~~l~s~s~---------------D~-~i~iwd~~~---~~~~~-~~~~-~~----~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          477 SVAFSLDNRQIVSASR---------------DR-TIKLWNTLG---ECKYT-ISEG-GE----GHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEEECTTSSCEEEEET---------------TS-CEEEECTTS---CEEEE-ECSS-TT----SCSSCEEEEEECSCSSS
T ss_pred             EEEEeCCCCEEEEEeC---------------CC-EEEEEECCC---Cccee-eccC-CC----CCCCcEEEEEEeCCCCc
Confidence            8999999999988765               22 333343211   00000 0000 00    012357789999998  


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ..|+++. .+++|.+||+..   .+.+..+ .+.                              .+....++|+|||++|
T Consensus       532 ~~l~s~s-~d~~v~vwd~~~---~~~~~~~-~~h------------------------------~~~v~~v~~spdg~~l  576 (694)
T 3dm0_A          532 PTIVSAS-WDKTVKVWNLSN---CKLRSTL-AGH------------------------------TGYVSTVAVSPDGSLC  576 (694)
T ss_dssp             CEEEEEE-TTSCEEEEETTT---CCEEEEE-CCC------------------------------SSCEEEEEECTTSSEE
T ss_pred             ceEEEEe-CCCeEEEEECCC---CcEEEEE-cCC------------------------------CCCEEEEEEeCCCCEE
Confidence            4666666 689999999964   2232222 111                              1247889999999999


Q ss_pred             EEEcC--CCCCCC
Q psy11412        272 YVSSS--LFSPWD  282 (290)
Q Consensus       272 ~Van~--~~~~~~  282 (290)
                      ++++.  .+.-||
T Consensus       577 ~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          577 ASGGKDGVVLLWD  589 (694)
T ss_dssp             EEEETTSBCEEEE
T ss_pred             EEEeCCCeEEEEE
Confidence            99865  555665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.00  E-value=6.7e-08  Score=85.82  Aligned_cols=184  Identities=15%  Similarity=0.109  Sum_probs=105.3

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCceeee-EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~-~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+..|+|+|+ +++|+++.. +++|++||+.......... ....++                              ...
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~h------------------------------~~~   88 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGH------------------------------SHF   88 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECCC------------------------------SSC
T ss_pred             CEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeCC------------------------------CCC
Confidence            5789999998 578877764 8999999997532221111 011110                              146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +..++|+|||++|++++.               ++ .+..++...   ......         ..........+.+++++
T Consensus        89 V~~~~~s~dg~~l~s~~~---------------d~-~i~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~  140 (340)
T 4aow_A           89 VSDVVISSDGQFALSGSW---------------DG-TLRLWDLTT---GTTTRR---------FVGHTKDVLSVAFSSDN  140 (340)
T ss_dssp             EEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---TEEEEE---------EECCSSCEEEEEECTTS
T ss_pred             EEEEEECCCCCEEEEEcc---------------cc-cceEEeecc---cceeee---------ecCCCCceeEEEEeecC
Confidence            788999999999998765               12 222122111   000000         00011345568899999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCc--------eEeeEEee---C-ce----ecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHP--------VLVGQIFL---G-GK----IQSDSGVTVIDDPELDKQPDPVIIKGRRF  255 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~--------~~v~~i~~---G-g~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (290)
                      ++|+++. .++.+.+||+......        ..+..+..   + ..    -..+++|.+++......   ...+.+.  
T Consensus       141 ~~l~s~s-~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~h--  214 (340)
T 4aow_A          141 RQIVSGS-RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---KTNHIGH--  214 (340)
T ss_dssp             SCEEEEE-TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---EEEECCC--
T ss_pred             ccceeec-CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---eeEecCC--
Confidence            9998887 6889999997432110        01111110   0 00    14577788888654210   0111121  


Q ss_pred             cCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        256 TGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       256 ~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      .+....++|+|||++|++++.  .+.-||
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            134688999999999999865  344444

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.00  E-value=1.1e-08  Score=92.00  Aligned_cols=185  Identities=12%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+..++|+|||++|+++.. +++|++||+... ....+..+. ++                              ....
T Consensus        14 ~~V~~v~~s~~g~~lasgs~-D~~v~lwd~~~~-~~~~~~~l~-gH------------------------------~~~V   60 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSS-DRSVKIFDVRNG-GQILIADLR-GH------------------------------EGPV   60 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEET-TTEEEEEEEETT-EEEEEEEEE-CC------------------------------SSCE
T ss_pred             CeEEEeeEcCCCCEEEEEeC-CCeEEEEEecCC-CcEEEEEEc-CC------------------------------CccE
Confidence            35789999999999998875 899999999652 112222221 21                              1457


Q ss_pred             eEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+|  +|++|+.++.               ++ .+.+|+..... ...+..     ..+    ....+..++|+||
T Consensus        61 ~~v~~~~~~~~~~l~s~s~---------------D~-~v~iWd~~~~~-~~~~~~-----~~~----h~~~V~~v~~~p~  114 (316)
T 3bg1_A           61 WQVAWAHPMYGNILASCSY---------------DR-KVIIWREENGT-WEKSHE-----HAG----HDSSVNSVCWAPH  114 (316)
T ss_dssp             EEEEECCGGGSSCEEEEET---------------TS-CEEEECCSSSC-CCEEEE-----ECC----CSSCCCEEEECCT
T ss_pred             EEEEeCCCCCCCEEEEEEC---------------CC-EEEEEECCCCc-ceEEEE-----ccC----CCCceEEEEECCC
Confidence            8899986  4888887764               22 33334432100 000110     000    1234678999998


Q ss_pred             --CCEEEEEeCCCCcEEEEEecCCCCceE-------------e-----------------------eEEeeCceecCCCc
Q psy11412        191 --DRYLYTSNWMHGDIRQYDIRDTAHPVL-------------V-----------------------GQIFLGGKIQSDSG  232 (290)
Q Consensus       191 --Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~-------------v-----------------------~~i~~Gg~~~~~~~  232 (290)
                        |++|+++. .+++|.+||+........             +                       ..+-+|   ..|++
T Consensus       115 ~~g~~lasgs-~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~D~~  190 (316)
T 3bg1_A          115 DYGLILACGS-SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG---GCDNL  190 (316)
T ss_dssp             TTCSCEEEEC-SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC---BTTSB
T ss_pred             CCCcEEEEEc-CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe---cCCCe
Confidence              88888777 689999999864321100             0                       011222   36788


Q ss_pred             eEEecCCCCCCCCCcceeecccccCCcceEEEccCC----CEEEEEcC--CCCCCC
Q psy11412        233 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG----KRIYVSSS--LFSPWD  282 (290)
Q Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG----~~L~Van~--~~~~~~  282 (290)
                      |++|+............+.+..  +..+.++|+|++    ++|+.++.  .+.-|+
T Consensus       191 v~lWd~~~~~~~~~~~~l~~h~--~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          191 IKLWKEEEDGQWKEEQKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             CCEEEECTTSCEEEEECCBCCS--SCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             EEEEEeCCCCccceeeecccCC--CceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence            9999864211000001122221  347899999997    78888755  455564

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.00  E-value=2.3e-08  Score=89.40  Aligned_cols=118  Identities=12%  Similarity=0.041  Sum_probs=77.9

Q ss_pred             CceEEEEEcCC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         33 AMVTDILISLD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        33 ~~p~~va~SpD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ..+..++|+|+    |++|++++. +|.|.+||+.+.   +.+..+...                               
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~---~~~~~~~~~-------------------------------  114 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGS-RGIIRIINPITM---QCIKHYVGH-------------------------------  114 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEET-TCEEEEECTTTC---CEEEEEESC-------------------------------
T ss_pred             CcEEEEEeccCCCCCCCEEEEecC-CCEEEEEEchhc---eEeeeecCC-------------------------------
Confidence            46889999999    668887775 899999998652   333322211                               


Q ss_pred             CCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        109 TGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       109 g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      ......++|+| +++.|++++.               ++ .+.+++...   .+.+..+..  ..    .....+..+++
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~--~~----~~~~~v~~~~~  169 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSK---------------DH-ALRLWNIQT---DTLVAIFGG--VE----GHRDEVLSADY  169 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEET---------------TS-CEEEEETTT---TEEEEEECS--TT----SCSSCEEEEEE
T ss_pred             CCcEEEEEECCCCCCEEEEEeC---------------CC-eEEEEEeec---CeEEEEecc--cc----cccCceeEEEE
Confidence            14678899999 9999988765               12 333344322   111111100  00    12246788999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|||++|+++. .++.|.+||+..
T Consensus       170 ~~~~~~l~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          170 DLLGEKIMSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEESCS
T ss_pred             CCCCCEEEEec-CCCCEEEEECCC
Confidence            99999999888 688999999853

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=2.6e-09  Score=103.88  Aligned_cols=130  Identities=11%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .|..|+|+| ++..||++....+.|+++|..+. ....+  +..+ .                           ..-..|
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l--~~~~-~---------------------------~~~~~p  188 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSP--LNIN-T---------------------------IPTNRI  188 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEE--ECCT-T---------------------------SSCSBE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEE--EccC-c---------------------------cccCCC
Confidence            699999999 68999999887778999987542 12221  1111 0                           001469


Q ss_pred             eEEEE-------ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE
Q psy11412        113 QMFQL-------SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI  185 (290)
Q Consensus       113 r~vaf-------sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i  185 (290)
                      ++|+|       +++|++||+++......+.         ...+..++.   .........+..    -.++....|.++
T Consensus       189 ~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~---------~~~V~~i~r---~~~G~~~~~~~~----~~v~~~~~p~gi  252 (496)
T 3kya_A          189 RSIAFNKKIEGYADEAEYMIVAIDYDGKGDE---------SPSVYIIKR---NADGTFDDRSDI----QLIAAYKQCNGA  252 (496)
T ss_dssp             EEEEECCCBTTTBCTTCEEEEEECCCTTGGG---------EEEEEEEEC---CTTSCCSTTSCE----EEEEEESCCCCE
T ss_pred             cEEEEeecccccCCCCCEEEEEeCCCCCccc---------CceEEEEec---CCCCceeecccc----eeeccCCCceEE
Confidence            99999       9999999998763210000         000111110   000000000000    001111356779


Q ss_pred             EEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        186 LISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +++|++++||++++.++.|..||+.
T Consensus       253 avdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          253 TIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEcCCCCeEEEEECCCCEEEEEecc
Confidence            9999999999999999999999985

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.00  E-value=2e-08  Score=94.69  Aligned_cols=154  Identities=11%  Similarity=0.062  Sum_probs=97.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.++++++.+..||+++...+.|..+++...........+...                              .-..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------------------------------~~~~  160 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------------------------DIQA  160 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------------------------------SCSC
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------------------------------CCCC
Confidence            4579999999999999999998999999987531100000001000                              0157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |.+|++++.++.||+++.....+.+...     ++...           ..+.  .         .....|.+|+++|.+
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~-----~g~~~-----------~~l~--~---------~~~~~P~~iavdp~~  213 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF--R---------ENGSKPRAIVVDPVH  213 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECT-----TTCSE-----------EEEE--E---------CSSCCEEEEEEETTT
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeC-----CCCce-----------EEEE--e---------CCCCCcceEEEeccc
Confidence            9999999999999998763222221110     11100           0000  0         012458899999999


Q ss_pred             CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ++||+++++. +.|..++++- ...+.+.  ..+.                               .+|++++|+|++++
T Consensus       214 g~ly~td~~~~~~I~~~~~dG-~~~~~~~--~~~l-------------------------------~~P~glavd~~~~~  259 (400)
T 3p5b_L          214 GFMYWTDWGTPAKIKKGGLNG-VDIYSLV--TENI-------------------------------QWPNGITLDLLSGR  259 (400)
T ss_dssp             TEEEEEECSSSCCEEEEETTS-CSCEEEE--CSSC-------------------------------SCEEEEEEETTTTE
T ss_pred             CeEEEEeCCCCCEEEEEeCCC-CccEEEE--ECCC-------------------------------CceEEEEEEeCCCE
Confidence            9999999874 7888887742 1111111  1111                               27999999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       260 lY~aD~  265 (400)
T 3p5b_L          260 LYWVDS  265 (400)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.99  E-value=1e-08  Score=96.88  Aligned_cols=153  Identities=10%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|++|+++++|+ ||+++...+.|++||... +  .+. .+...                               +..|+
T Consensus       132 ~P~~la~d~~g~-lyv~d~~~~~I~~id~~~-g--~~~-~~~~~-------------------------------~~~~~  175 (409)
T 3hrp_A          132 YMWGIAAVGNNT-VLAYQRDDPRVRLISVDD-N--KVT-TVHPG-------------------------------FKGGK  175 (409)
T ss_dssp             CEEEEEECSTTE-EEEEETTTTEEEEEETTT-T--EEE-EEEET-------------------------------CCBCB
T ss_pred             CceEEEEeCCCC-EEEEecCCCcEEEEECCC-C--EEE-Eeecc-------------------------------CCCCc
Confidence            799999999998 999998889999999854 1  221 11111                               14567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDGr  192 (290)
                       ++|+|+|++||+++...+              ..+..++...   ......+  +..    .+ ....+.+++++|++.
T Consensus       176 -ia~~~~g~~l~~~d~~~~--------------~~I~~~d~~~---~~~~~~~--g~~----~~~~~~~p~~iav~p~~g  231 (409)
T 3hrp_A          176 -PAVTKDKQRVYSIGWEGT--------------HTVYVYMKAS---GWAPTRI--GQL----GSTFSGKIGAVALDETEE  231 (409)
T ss_dssp             -CEECTTSSEEEEEBSSTT--------------CEEEEEEGGG---TTCEEEE--EEC----CTTSCSCCCBCEECTTSS
T ss_pred             -eeEecCCCcEEEEecCCC--------------ceEEEEEcCC---CceeEEe--eec----cchhcCCcEEEEEeCCCC
Confidence             999999999999876221              0221122110   0000000  000    01 124567899999878


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc-eEEEccCCCEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ-MFQLSLDGKRI  271 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~a~sPDG~~L  271 (290)
                      .||++. .++.|..||.... ....++....-+.                            .+..|+ +++|+|++.+|
T Consensus       232 ~lyv~d-~~~~I~~~d~~~~-~~~~~~~~~~~g~----------------------------~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          232 WLYFVD-SNKNFGRFNVKTQ-EVTLIKQLELSGS----------------------------LGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             EEEEEC-TTCEEEEEETTTC-CEEEEEECCCCSC----------------------------CCCSSCCEEEEETTTTEE
T ss_pred             eEEEEE-CCCcEEEEECCCC-CEEEEecccccCC----------------------------CCCCccccEEEeCCCCEE
Confidence            899977 4788999987532 2222221111010                            011467 99999999999


Q ss_pred             EEEcC
Q psy11412        272 YVSSS  276 (290)
Q Consensus       272 ~Van~  276 (290)
                      |+++.
T Consensus       282 yv~d~  286 (409)
T 3hrp_A          282 YMSDQ  286 (409)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.99  E-value=1.4e-08  Score=89.23  Aligned_cols=147  Identities=10%  Similarity=0.076  Sum_probs=87.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ..|+++++++.+..||+++.. ++.|.+|+. +   .+.+..+..+                              ....
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~---g~~~~~~~~~------------------------------~~~~  122 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y---GQFVRKFGAT------------------------------ILQH  122 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECT-T---SCEEEEECTT------------------------------TCSC
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C---CcEEEEecCc------------------------------cCCC
Confidence            379999996445568888864 789999983 3   2222222111                              0147


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |++++++|+|+ +|+++...+.               +..++..    .+.+..+..   .    .....|.+|+++|||
T Consensus       123 ~~~i~~~~~g~-l~v~~~~~~~---------------i~~~~~~----g~~~~~~~~---~----~~~~~p~~i~~~~~g  175 (286)
T 1q7f_A          123 PRGVTVDNKGR-IIVVECKVMR---------------VIIFDQN----GNVLHKFGC---S----KHLEFPNGVVVNDKQ  175 (286)
T ss_dssp             EEEEEECTTSC-EEEEETTTTE---------------EEEECTT----SCEEEEEEC---T----TTCSSEEEEEECSSS
T ss_pred             ceEEEEeCCCC-EEEEECCCCE---------------EEEEcCC----CCEEEEeCC---C----CccCCcEEEEECCCC
Confidence            89999999997 8887652221               2112110    000110000   0    011357899999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      + ||+++..++.|.+||..    ...+..+...+.                             -..|..++++|||+ |
T Consensus       176 ~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~g~-----------------------------~~~p~~i~~d~~G~-l  220 (286)
T 1q7f_A          176 E-IFISDNRAHCVKVFNYE----GQYLRQIGGEGI-----------------------------TNYPIGVGINSNGE-I  220 (286)
T ss_dssp             E-EEEEEGGGTEEEEEETT----CCEEEEESCTTT-----------------------------SCSEEEEEECTTCC-E
T ss_pred             C-EEEEECCCCEEEEEcCC----CCEEEEEccCCc-----------------------------cCCCcEEEECCCCC-E
Confidence            7 89998788999999863    223333322110                             02699999999996 5


Q ss_pred             EEEc
Q psy11412        272 YVSS  275 (290)
Q Consensus       272 ~Van  275 (290)
                      ||++
T Consensus       221 ~v~~  224 (286)
T 1q7f_A          221 LIAD  224 (286)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.98  E-value=3.4e-08  Score=88.19  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=103.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCC---CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         33 AMVTDILISLDDRYLYTSNWM---HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~---~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ..+..++|+|||.++++++..   ++.|.+||+... ......  ..++                              .
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-~~~~~~--~~~~------------------------------~   65 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-DLKLLR--EIEK------------------------------A   65 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-SEEEEE--EEEE------------------------------S
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-ccccee--eecc------------------------------c
Confidence            367899999999888766644   899999999753 222221  1111                              1


Q ss_pred             CCceEEEEccC---CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc-cccccCccccCccccCCCCceeEE
Q psy11412        110 GSSQMFQLSLD---GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN-EMRSMPLSSLGSWKYPARSMVTDI  185 (290)
Q Consensus       110 ~gPr~vafsPd---G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~~~i  185 (290)
                      .....++|+|+   |++|++.+.               ++ .+.+++...   .+ .+..+.     +    .......+
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~---------------dg-~i~iwd~~~---~~~~~~~~~-----~----~~~~v~~~  117 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDF---------------GG-NLHIWNLEA---PEMPVYSVK-----G----HKEIINAI  117 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEET---------------TS-CEEEECTTS---CSSCSEEEC-----C----CSSCEEEE
T ss_pred             CcEEEEEEcCCCCCCceEEEecC---------------CC-eEEEEeCCC---CCccEEEEE-----e----cccceEEE
Confidence            46788999999   698888765               12 233333322   11 111100     0    11234455


Q ss_pred             ------EEccCCCEEEEEeCCCCcEEEEEecCCCC-ceEe-----------eEE-------eeCcee---cCCCceEEec
Q psy11412        186 ------LISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLV-----------GQI-------FLGGKI---QSDSGVTVID  237 (290)
Q Consensus       186 ------~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~-~~~v-----------~~i-------~~Gg~~---~~~~~v~~~~  237 (290)
                            +|+|||++|+++. .++.|.+||+..... ...+           ..+       +.+..+   ..++.|.+++
T Consensus       118 ~~~~~~~~s~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (357)
T 3i2n_A          118 DGIGGLGIGEGAPEIVTGS-RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFD  196 (357)
T ss_dssp             EEESGGGCC-CCCEEEEEE-TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEE
T ss_pred             eeccccccCCCccEEEEEe-CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEE
Confidence                  5689999999888 688999999965331 1111           111       111111   4567788888


Q ss_pred             CCCCCCCCCcceeecccccCCcceEEEcc---CCCEEEEEcC
Q psy11412        238 DPELDKQPDPVIIKGRRFTGSSQMFQLSL---DGKRIYVSSS  276 (290)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~P~~~a~sP---DG~~L~Van~  276 (290)
                      ......    .  .-....+....++|+|   +|++|++++.
T Consensus       197 ~~~~~~----~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          197 LRNMAL----R--WETNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             TTTTEE----E--EEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             CccCce----e--eecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            654211    1  1111234679999999   9999999865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.98  E-value=1.9e-08  Score=91.49  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.++++++.++.||+++...+.|.+++.+. ...+.+.   ..                              ....|
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~---~~------------------------------~~~~P  122 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF---RE------------------------------NGSKP  122 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE---EC------------------------------TTCCE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE---EC------------------------------CCCCc
Confidence            37899999999999999999899999999742 2222211   10                              01579


Q ss_pred             eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ++++++|++++||+++... ..+.++.     .+|...           ..+..           ..-..|.+|+++|++
T Consensus       123 ~~iavdp~~g~ly~~d~~~~~~I~~~~-----~dG~~~-----------~~~~~-----------~~~~~P~gla~d~~~  175 (316)
T 1ijq_A          123 RAIVVDPVHGFMYWTDWGTPAKIKKGG-----LNGVDI-----------YSLVT-----------ENIQWPNGITLDLLS  175 (316)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEE-----TTSCCE-----------EEEEC-----------SSCSCEEEEEEETTT
T ss_pred             ceEEeCCCCCEEEEEccCCCCeEEEEc-----CCCCCe-----------EEEEE-----------CCCCCceEEEEeccC
Confidence            9999999999999987521 1111100     011100           00100           011467899999999


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++||+++...+.|.++|..
T Consensus       176 ~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          176 GRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             TEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEecC
Confidence            9999999989999999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.98  E-value=4.7e-08  Score=87.64  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|.+++|+|||++||+++...+.+-++...   .++..+..+.      .....          ..+....+.+|++++
T Consensus       182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~---~~g~~~~~~~------~~~~~----------~~~~~~~~~~i~~d~  242 (333)
T 2dg1_A          182 SVANGIALSTDEKVLWVTETTANRLHRIALE---DDGVTIQPFG------ATIPY----------YFTGHEGPDSCCIDS  242 (333)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC---TTSSSEEEEE------EEEEE----------ECCSSSEEEEEEEBT
T ss_pred             CcccceEECCCCCEEEEEeCCCCeEEEEEec---CCCcCccccc------ceEEE----------ecCCCCCCCceEECC
Confidence            3688999999999999986522222111110   0111110000      00000          011113577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      ||+ ||+++..++.|.+||..    .+.+..+..+...                       .|.  -..|..++|+|||+
T Consensus       243 ~G~-l~v~~~~~~~v~~~d~~----g~~~~~~~~~~~~-----------------------~g~--~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          243 DDN-LYVAMYGQGRVLVFNKR----GYPIGQILIPGRD-----------------------EGH--MLRSTHPQFIPGTN  292 (333)
T ss_dssp             TCC-EEEEEETTTEEEEECTT----SCEEEEEECTTGG-----------------------GTC--SCBCCEEEECTTSC
T ss_pred             CCC-EEEEEcCCCEEEEECCC----CCEEEEEEcCCCc-----------------------ccc--ccCcceEEECCCCC
Confidence            997 68887677899999762    2344444433200                       000  01488999999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +||+++.
T Consensus       293 ~L~v~~~  299 (333)
T 2dg1_A          293 QLIICSN  299 (333)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9998865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.97  E-value=9.5e-08  Score=89.09  Aligned_cols=209  Identities=9%  Similarity=0.154  Sum_probs=112.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc----ccC----------CCceEEecCCCCcCCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK----IQS----------DSGVTVIDDPELDKQPD   99 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~----~~~----------~~~~~v~~~~~~~~~~~   99 (290)
                      .+.+|+|+|||++|+++.. +|+|.+||+...   +.+..+..+..    +..          .+.+.+.+......  .
T Consensus       149 ~V~sv~fspdg~~lasgs~-Dg~v~iWd~~~~---~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~--~  222 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH--H  222 (420)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC--E
T ss_pred             cEEEEEECCCCCEEEEEEC-CCeEEEEEcCCC---cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce--e
Confidence            5889999999999998875 899999999753   33322211100    000          11111111111000  0


Q ss_pred             cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412        100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR  179 (290)
Q Consensus       100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  179 (290)
                      .....+.  ......+.++|+|++++....               ++ .+.+++....   .... ......    ....
T Consensus       223 ~~~~~~h--~~~~~~~~~~~~g~~l~s~~~---------------D~-~v~i~~~~~~---~~~~-~~~~~~----~~~~  276 (420)
T 4gga_A          223 VATLSGH--SQEVCGLRWAPDGRHLASGGN---------------DN-LVNVWPSAPG---EGGW-VPLQTF----TQHQ  276 (420)
T ss_dssp             EEEEECC--SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEESSCC---SSCS-CCSEEE----CCCS
T ss_pred             eEEeccc--ccceeeeeecCCCCeeeeeec---------------cc-cceEEeeccc---cccc-eeeeee----cccC
Confidence            0001111  145678999999999988654               12 2222332210   0000 000000    0012


Q ss_pred             CceeEEEEccCCCEEEEE--eCCCCcEEEEEecCCCCceEeeEEeeCcee-----------------cCCCceEEecCCC
Q psy11412        180 SMVTDILISLDDRYLYTS--NWMHGDIRQYDIRDTAHPVLVGQIFLGGKI-----------------QSDSGVTVIDDPE  240 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs--~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~-----------------~~~~~v~~~~~~~  240 (290)
                      ..+..++++|++..++++  .-.++.|.+||+..   ...+..+..+..+                 ..++.|.+|+...
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence            456789999987766543  22468999999854   2333333222111                 2577899998654


Q ss_pred             CCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        241 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      ..  + ...+.|..  +....++|+|||++|+.+..  ++.-|+
T Consensus       354 ~~--~-v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          354 MA--K-VAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             CC--E-EEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             Cc--E-EEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            21  1 11233322  35789999999999998865  566675

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.96  E-value=1e-07  Score=85.41  Aligned_cols=190  Identities=15%  Similarity=0.160  Sum_probs=100.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|+++++++||+ ||+++.+.+.|.+|+.+  +..+.+.....+                             .....
T Consensus        85 ~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~-----------------------------~~~~~  132 (305)
T 3dr2_A           85 TAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQAHLLVGRYAG-----------------------------KRLNS  132 (305)
T ss_dssp             CSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEECEETT-----------------------------EECSC
T ss_pred             CCccceeeECCCCC-EEEEECCCCEEEEECCC--CCEEEEEeccCC-----------------------------CccCC
Confidence            34789999999998 77888777889999863  333322111000                             00146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcc---eeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWD---KEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d---~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      |+.++++|||+ +|+++...+...   ...... ......+..++..+    ..+..          +.....+.+++||
T Consensus       133 ~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~-~~~~~~v~~~d~~~----g~~~~----------~~~~~~p~gl~~s  196 (305)
T 3dr2_A          133 PNDLIVARDGA-IWFTDPPFGLRKPSQGCPADP-ELAHHSVYRLPPDG----SPLQR----------MADLDHPNGLAFS  196 (305)
T ss_dssp             CCCEEECTTSC-EEEECCSGGGSCGGGSCCCCC-SSSCEEEEEECSSS----CCCEE----------EEEESSEEEEEEC
T ss_pred             CCCEEECCCCC-EEEeCcCCCcccccccccccc-ccCCCeEEEEcCCC----CcEEE----------EecCCCCcceEEc
Confidence            88899999998 666542100000   000000 00011122122100    00110          0011346789999


Q ss_pred             cCCCEEEEEeCCC-----CcEEEEEecCCC--CceEeeEE----eeCceecC--------CCceEEecCCCCCCCCCcce
Q psy11412        189 LDDRYLYTSNWMH-----GDIRQYDIRDTA--HPVLVGQI----FLGGKIQS--------DSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       189 pDGr~Lyvs~r~~-----~~V~v~Dv~d~~--~~~~v~~i----~~Gg~~~~--------~~~v~~~~~~~~~~~~~~~~  249 (290)
                      |||+.||+++...     +.|.+||+....  ..+.....    +.|-.+.+        .+.|.+++..+.       .
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~-------~  269 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQ-------L  269 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSC-------E
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCC-------E
Confidence            9999999998653     789999986421  00111100    01111122        233555654331       1


Q ss_pred             eecccccCCcceEEEccCCCEEEEEcC
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      +.-+.....|..++|+|||++||+++.
T Consensus       270 ~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          270 LGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            111222336899999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.96  E-value=4.9e-08  Score=90.40  Aligned_cols=129  Identities=12%  Similarity=0.100  Sum_probs=73.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++++|||++|+++  .+++|.+||+...  ...+..+....               ...       .+.  .....
T Consensus       179 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~--~~~~~~~~~~~---------------~~~-------~~~--~~~v~  230 (447)
T 3dw8_B          179 HINSISINSDYETYLSA--DDLRINLWHLEIT--DRSFNIVDIKP---------------ANM-------EEL--TEVIT  230 (447)
T ss_dssp             CCCEEEECTTSSEEEEE--CSSEEEEEETTEE--EEEEEEEECCC---------------SSG-------GGC--CCCEE
T ss_pred             ceEEEEEcCCCCEEEEe--CCCeEEEEECCCC--Cceeeeeeccc---------------ccc-------ccc--CcceE
Confidence            56789999999999876  4899999998632  12222111100               000       000  14678


Q ss_pred             EEEEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc----ccccCccccC--ccccC-CCCceeEE
Q psy11412        114 MFQLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE----MRSMPLSSLG--SWKYP-ARSMVTDI  185 (290)
Q Consensus       114 ~vafsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~----i~~~p~~~~~--~~~~~-~~~~~~~i  185 (290)
                      .++|+|+| ++|++++.               ++ .+.+++...   ...    +..+......  .-.+. .......+
T Consensus       231 ~~~~~p~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  291 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSS---------------KG-TIRLCDMRA---SALCDRHSKLFEEPEDPSNRSFFSEIISSISDV  291 (447)
T ss_dssp             EEEECSSCTTEEEEEET---------------TS-CEEEEETTT---CSSSCTTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred             EEEECCCCCcEEEEEeC---------------CC-eEEEEECcC---CccccceeeEeccCCCccccccccccCceEEEE
Confidence            89999999 88887665               12 233333221   110    0100000000  00000 00157789


Q ss_pred             EEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        186 LISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|+|||++|+++..  +.|.+||+..
T Consensus       292 ~~s~~g~~l~~~~~--~~v~iwd~~~  315 (447)
T 3dw8_B          292 KFSHSGRYMMTRDY--LSVKVWDLNM  315 (447)
T ss_dssp             EECTTSSEEEEEES--SEEEEEETTC
T ss_pred             EECCCCCEEEEeeC--CeEEEEeCCC
Confidence            99999999998874  8999999964

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.96  E-value=4.1e-09  Score=104.56  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             eEEEEcc--CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        183 TDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       183 ~~i~~Sp--DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      ..++|||  ||++||++++ ++.+.+|++...  ...+..+..+.                               ....
T Consensus       313 ~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~--~~~~~~l~~~~-------------------------------~~v~  358 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTT--GRLIRQVTKGE-------------------------------WEVT  358 (706)
T ss_dssp             SCCEECTTCSSEEEEEECT-TSSCEEEEEETT--SCEEEECCCSS-------------------------------SCEE
T ss_pred             CCceeecCCCCEEEEEEcc-CCccEEEEEECC--CCEEEecCCCC-------------------------------eEEE
Confidence            4589999  9999998884 567888887521  12222221111                               0233


Q ss_pred             e-EEEccCCCEEEEEcCC
Q psy11412        261 M-FQLSLDGKRIYVSSSL  277 (290)
Q Consensus       261 ~-~a~sPDG~~L~Van~~  277 (290)
                      . ++|||||++||+++..
T Consensus       359 ~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          359 NFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEEECTTSSEEEEEESS
T ss_pred             eeeEEcCCCCEEEEEecC
Confidence            3 7999999999888653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.96  E-value=2.6e-08  Score=88.77  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=108.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|+|||++|++++. +|.|.+|++............. ++                              ...+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~-~~------------------------------~~~v   59 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSW-DGSLTVYKFDIQAKNVDLLQSL-RY------------------------------KHPL   59 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEET-TSEEEEEEEETTTTEEEEEEEE-EC------------------------------SSCE
T ss_pred             CcEEEEEEcCCCCEEEEEcC-CCeEEEEEeCCCCccccceeee-ec------------------------------CCce
Confidence            36789999999999998875 7999999997643111221111 11                              1467


Q ss_pred             eEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeeccee-eeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEI-MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+|+|+ +|++++.               ++ .+.+++. ..   .. ...+.     +  .........++++| 
T Consensus        60 ~~~~~~~~~~~~l~~~~~---------------dg-~i~~wd~~~~---~~-~~~~~-----~--~~~~~~v~~l~~~~-  111 (342)
T 1yfq_A           60 LCCNFIDNTDLQIYVGTV---------------QG-EILKVDLIGS---PS-FQALT-----N--NEANLGICRICKYG-  111 (342)
T ss_dssp             EEEEEEESSSEEEEEEET---------------TS-CEEEECSSSS---SS-EEECB-----S--CCCCSCEEEEEEET-
T ss_pred             EEEEECCCCCcEEEEEcC---------------CC-eEEEEEeccC---Cc-eEecc-----c--cCCCCceEEEEeCC-
Confidence            8899999999 8988765               22 3333433 22   11 11100     0  00124567899999 


Q ss_pred             CCEEEEEeCCCCcEEEEEecC---------CCCc------eEeeEEeeC-cee---cCCCceEEecCCC-CCCCCCccee
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRD---------TAHP------VLVGQIFLG-GKI---QSDSGVTVIDDPE-LDKQPDPVII  250 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d---------~~~~------~~v~~i~~G-g~~---~~~~~v~~~~~~~-~~~~~~~~~~  250 (290)
                      ++.|+++. .++.|.+||+..         ....      ..+..+... ..+   ..++.|.+++... .. .+.... 
T Consensus       112 ~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~-  188 (342)
T 1yfq_A          112 DDKLIAAS-WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED-DNGTIE-  188 (342)
T ss_dssp             TTEEEEEE-TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT-CCCEEE-
T ss_pred             CCEEEEEc-CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc-ccceee-
Confidence            99999888 689999999853         1100      011111110 001   4577899998765 21 111111 


Q ss_pred             ecccccCCcceEEEcc-CCCEEEEEcC
Q psy11412        251 KGRRFTGSSQMFQLSL-DGKRIYVSSS  276 (290)
Q Consensus       251 ~~~~~~~~P~~~a~sP-DG~~L~Van~  276 (290)
                       .......++.++|+| ||++|++++.
T Consensus       189 -~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          189 -ESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             -ECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             -ecCCCCceeEEEECCCCCCEEEEEec
Confidence             111123579999999 9999999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.96  E-value=1.7e-08  Score=90.24  Aligned_cols=158  Identities=10%  Similarity=0.121  Sum_probs=96.6

Q ss_pred             ceEEEEEcCC---C-CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLD---D-RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpD---G-r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+.+++|+|+   + ..++++. ++|.|.+||+........+......                             ...
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~-----------------------------~~~   69 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATV-GSNRVTLYECHSQGEIRLLQSYVDA-----------------------------DAD   69 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEE-ETTEEEEEEECGGGCEEEEEEEECS-----------------------------CTT
T ss_pred             ceEEEEEecccCCCCceEEEEC-CCCEEEEEEcCCCcEEEeeeecccc-----------------------------CCC
Confidence            5789999985   4 4454444 4679999999753332232211100                             011


Q ss_pred             CCceEEEEccC----CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE
Q psy11412        110 GSSQMFQLSLD----GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI  185 (290)
Q Consensus       110 ~gPr~vafsPd----G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i  185 (290)
                      .....++|+|+    |++|++++.               ++ .+.+++...   .+.+..+.     +    .......+
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~v~d~~~---~~~~~~~~-----~----~~~~i~~~  121 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGS---------------RG-IIRIINPIT---MQCIKHYV-----G----HGNAINEL  121 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEET---------------TC-EEEEECTTT---CCEEEEEE-----S----CCSCEEEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecC---------------CC-EEEEEEchh---ceEeeeec-----C----CCCcEEEE
Confidence            46788999999    667887665               22 333343322   11111100     0    12457789


Q ss_pred             EEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee-CceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        186 LISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       186 ~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~-Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      +|+| |+++|+++. .++.|.+||+..   .+.+..+.. .+                    +         .+.+..++
T Consensus       122 ~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~~--------------------~---------~~~v~~~~  168 (366)
T 3k26_A          122 KFHPRDPNLLLSVS-KDHALRLWNIQT---DTLVAIFGGVEG--------------------H---------RDEVLSAD  168 (366)
T ss_dssp             EECSSCTTEEEEEE-TTSCEEEEETTT---TEEEEEECSTTS--------------------C---------SSCEEEEE
T ss_pred             EECCCCCCEEEEEe-CCCeEEEEEeec---CeEEEEeccccc--------------------c---------cCceeEEE
Confidence            9999 999999888 689999999954   233333211 00                    0         12578999


Q ss_pred             EccCCCEEEEEcC--CCCCCC
Q psy11412        264 LSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       264 ~sPDG~~L~Van~--~~~~~~  282 (290)
                      |+|+|++|+++..  .+.-|+
T Consensus       169 ~~~~~~~l~~~~~dg~i~i~d  189 (366)
T 3k26_A          169 YDLLGEKIMSCGMDHSLKLWR  189 (366)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCEEEEecCCCCEEEEE
Confidence            9999999999865  455554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.96  E-value=2.6e-08  Score=95.86  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             Cc-eEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCC-----CceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         33 AM-VTDILISL--DDRYLYTSNWMHGDIRQYDIRDTA-----HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        33 ~~-p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~-----~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      .. +..++|+|  ||++|++++. +|+|++||+....     ..+.+..+...                           
T Consensus        64 ~~~v~~~~~sp~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~---------------------------  115 (615)
T 1pgu_A           64 SSVVTTVKFSPIKGSQYLCSGDE-SGKVIVWGWTFDKESNSVEVNVKSEFQVL---------------------------  115 (615)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEET-TSEEEEEEEEEEGGGTEEEEEEEEEEECC---------------------------
T ss_pred             CceEEEEEECcCCCCCEEEEecC-CCEEEEEeCCCCcccccccccccchhhcc---------------------------
Confidence            35 89999999  9999998875 8999999995320     11222221111                           


Q ss_pred             ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                          ......++|+|||++|+++.....            ....+..++.     .+.+..+.     +    .......
T Consensus       116 ----~~~v~~~~~s~~~~~l~~~~~~~~------------~~~~v~~~d~-----~~~~~~~~-----~----~~~~v~~  165 (615)
T 1pgu_A          116 ----AGPISDISWDFEGRRLCVVGEGRD------------NFGVFISWDS-----GNSLGEVS-----G----HSQRINA  165 (615)
T ss_dssp             ----SSCEEEEEECTTSSEEEEEECCSS------------CSEEEEETTT-----CCEEEECC-----S----CSSCEEE
T ss_pred             ----cccEEEEEEeCCCCEEEEeccCCC------------CccEEEEEEC-----CCcceeee-----c----CCccEEE
Confidence                146788999999999998765110            0012222331     11111100     1    1245778


Q ss_pred             EEEccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        185 ILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       185 i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      ++|+|||+ .|+++. .++.|.+||+..   .+.+..+..-..                            .+.....++
T Consensus       166 ~~~~~~~~~~l~~~~-~d~~v~vwd~~~---~~~~~~~~~~~~----------------------------~~~~v~~~~  213 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVG-DDGSVVFYQGPP---FKFSASDRTHHK----------------------------QGSFVRDVE  213 (615)
T ss_dssp             EEECSSSSCEEEEEE-TTTEEEEEETTT---BEEEEEECSSSC----------------------------TTCCEEEEE
T ss_pred             EEECCCCCcEEEEEe-CCCcEEEEeCCC---cceeeeecccCC----------------------------CCceEEEEE
Confidence            99999998 566665 789999999753   344443321110                            001467899


Q ss_pred             EccC-CCEEEEEcC--CCCCCC
Q psy11412        264 LSLD-GKRIYVSSS--LFSPWD  282 (290)
Q Consensus       264 ~sPD-G~~L~Van~--~~~~~~  282 (290)
                      |+|| |++|++++.  .+.-|+
T Consensus       214 ~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          214 FSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEeCCCeEEEEE
Confidence            9999 999998865  445554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.96  E-value=2e-09  Score=107.28  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC--CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTA--HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~--~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+++|||||++|+++..  ++|.+||+....  ....+.    .                              ....+
T Consensus       111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~----~------------------------------~~~~~  154 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT----H------------------------------GEGFA  154 (741)
T ss_dssp             SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC----C------------------------------SSSCE
T ss_pred             cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc----c------------------------------CCccc
Confidence            568899999999998875  899999997531  121110    0                              01457


Q ss_pred             eEEEEccCCCEEEEEcC
Q psy11412        113 QMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       113 r~vafsPdG~~lYv~ne  129 (290)
                      .+++|||||++|+.+..
T Consensus       155 ~~~~~SPDG~~la~~~~  171 (741)
T 2ecf_A          155 TDAKLSPKGGFVSFIRG  171 (741)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             ccccCCCCCCEEEEEeC
Confidence            88999999998887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.96  E-value=3.2e-08  Score=87.04  Aligned_cols=65  Identities=8%  Similarity=0.104  Sum_probs=46.1

Q ss_pred             CceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCc------eeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         33 AMVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHP------VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        33 ~~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~------~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      ..+..++|+|  |+++|+++.. +|+|++||+......      +.+..+...                           
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~---------------------------  109 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASY-DKTVKLWEEDPDQEECSGRRWNKLCTLNDS---------------------------  109 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEET-TSCEEEEEECTTSCTTSSCSEEEEEEECCC---------------------------
T ss_pred             CcEEEEEEcCCCCCCEEEEEcC-CCeEEEEecCCCcccccccCcceeeeeccc---------------------------
Confidence            4678999999  6999998875 899999999753211      112111100                           


Q ss_pred             ccccCCCceEEEEccC--CCEEEEEcC
Q psy11412        105 GRRFTGSSQMFQLSLD--GKRIYVSSS  129 (290)
Q Consensus       105 ~~~~g~gPr~vafsPd--G~~lYv~ne  129 (290)
                          ......++|+|+  ++++++++.
T Consensus       110 ----~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A          110 ----KGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             ----SSCEEEEEECCGGGCSEEEEEET
T ss_pred             ----CCceeEEEEcCCCCCcEEEEecC
Confidence                146788999999  999998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.95  E-value=4.1e-08  Score=98.11  Aligned_cols=165  Identities=9%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             EEEecCCCccCCCCCCCCCCC--ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPA--MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~--~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      ..|++........+   ++++  .|.+|++++++.+||+++...+.|..++++. ...+.+  +..+             
T Consensus        18 ~~i~l~~~~~~~~~---~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~~~~v--~~~g-------------   78 (628)
T 4a0p_A           18 RRISLETNNNNVAI---PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG-SALEHV--VEFG-------------   78 (628)
T ss_dssp             EEEESSCTTCEEEC---CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE--ECSS-------------
T ss_pred             EEEECCCCCcceEE---EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC-CCcEEE--EeCC-------------
Confidence            56677654433322   3433  7999999999999999999999999988753 222221  1111             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        -..|.+||+++.++.||+++...+.+.+...     +|...           ..+.   .  
T Consensus        79 ------------------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~-----dG~~~-----------~~l~---~--  119 (628)
T 4a0p_A           79 ------------------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-----DGQHR-----------QVLV---W--  119 (628)
T ss_dssp             ------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEET-----TSTTC-----------EEEE---C--
T ss_pred             ------------------CCCcceEEEEeCCCEEEEEECCCCEEEEEec-----CCCcE-----------EEEE---e--
Confidence                              1469999999999999998763222222110     11100           0000   0  


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                            ..-..|.+|+++|...+||.++++ .+.|..++++ ....+.+.   .+.                        
T Consensus       120 ------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~~~~l~---~~~------------------------  165 (628)
T 4a0p_A          120 ------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLV---PNV------------------------  165 (628)
T ss_dssp             ------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE---CSC------------------------
T ss_pred             ------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCceEEEE---CCC------------------------
Confidence                  012468899999988899999987 5788888763 22222221   111                        


Q ss_pred             eecccccCCcceEEEccCCCEEEEEcC
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                             .+|++++|++++++||+++.
T Consensus       166 -------~~P~GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          166 -------GRANGLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             -------SSEEEEEEETTTTEEEEEET
T ss_pred             -------CCcceEEEccccCEEEEEEC
Confidence                   27999999999999999976

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.93  E-value=2.3e-08  Score=88.46  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ..+.+|++++||+ ||+++..++.|.+||...   .+.+..+....                               ..|
T Consensus       226 ~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~---g~~~~~~~~~~-------------------------------~~~  270 (314)
T 1pjx_A          226 GGADGMDFDEDNN-LLVANWGSSHIEVFGPDG---GQPKMRIRCPF-------------------------------EKP  270 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEEEETTTEEEEECTTC---BSCSEEEECSS-------------------------------SCE
T ss_pred             CCCCceEECCCCC-EEEEEcCCCEEEEEcCCC---CcEeEEEeCCC-------------------------------CCc
Confidence            3578899999996 678876788999997632   22333333222                               268


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ..++|+|||++||+++.
T Consensus       271 ~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          271 SNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             eeEEECCCCCEEEEEeC
Confidence            99999999999999865

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.93  E-value=1.1e-08  Score=93.61  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=27.0

Q ss_pred             CceeEEEEccCCCEEEEEeC---CCCcEEEEEec
Q psy11412        180 SMVTDILISLDDRYLYTSNW---MHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r---~~~~V~v~Dv~  210 (290)
                      ..+.+|+++|++.++|+++.   .++.|.+||+.
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            35688999999889999998   78899999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.93  E-value=6.8e-09  Score=102.45  Aligned_cols=143  Identities=9%  Similarity=-0.033  Sum_probs=77.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC---Cc-CCCCcceeecc
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE---LD-KQPDPVIIKGR  106 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~---~~-~~~~~~~~~~~  106 (290)
                      +...+.+|++||||++++++. .+++|+  |...   ++.+   . |+... --++.+.++..   .. ...........
T Consensus        14 ~~~~v~sv~~SpDG~~iASas-~D~TV~--d~~~---~~~l---~-gh~~~-v~~V~FsPdg~~~~~~~~~~~~~~~~~~   82 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTF-PDISIG--QPKY---AKDI---N-CNSKN-LFHVKEFPLEFENKLDFELAQQNGLLNS   82 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECS-SSEEEE--EECC---CSCC---S-SBGGG-TEEEEEECCCCCCTTTTSCCCSSCSSTT
T ss_pred             hhccEEEEEECCCCCEEEEEc-CCceee--cccc---ccee---c-CCCcc-EEEEEECCCCCcceEEEEeCCCceEeec
Confidence            344678999999999998775 478887  5322   2222   1 11100 00111112210   00 00000000000


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                      .....+..++|||||++|.+++.               ++ .+.+|+...     .+....    ....+ .......++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~---------------dg-~V~iwd~~~-----~l~~l~----~~~~~-~~~sv~sva  136 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSN---------------NG-NVSVFKDNK-----MLTNLD----SKGNL-SSRTYHCFE  136 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEET---------------TS-CEEEEETTE-----EEEECC----CSSCS-TTTCEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeC---------------CC-cEEEEeCCc-----eeeecc----CCCcc-ccccEEEEE
Confidence            11256889999999999998765               23 333344211     111100    00000 012467899


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |||||++|++++ .+++|.+||+..
T Consensus       137 fSPDG~~LAsgs-~DGtVkIWd~~~  160 (588)
T 2j04_A          137 WNPIESSIVVGN-EDGELQFFSIRK  160 (588)
T ss_dssp             ECSSSSCEEEEE-TTSEEEEEECCC
T ss_pred             EcCCCCEEEEEc-CCCEEEEEECCC
Confidence            999999999999 689999999964

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.93  E-value=2.2e-08  Score=105.47  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=99.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|||||++|++++. +|+|.+||+.+.   +.+..+..+                               ...+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~-d~~i~vw~~~~~---~~~~~~~~h-------------------------------~~~v  660 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGA-DKTLQVFKAETG---EKLLDIKAH-------------------------------EDEV  660 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSCEEEEETTTC---CEEEEECCC-------------------------------SSCE
T ss_pred             ccEEEEEECCCCCEEEEEeC-CCeEEEEECCCC---CEEEEeccC-------------------------------CCCE
Confidence            46789999999999988874 889999999653   233222111                               1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC--
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD--  190 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD--  190 (290)
                      ..++|||||++|++++.               + +.+.+|+..+   .+.+..+.     +    .......++|+|+  
T Consensus       661 ~~~~~s~~~~~l~s~~~---------------d-~~v~vwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          661 LCCAFSSDDSYIATCSA---------------D-KKVKIWDSAT---GKLVHTYD-----E----HSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             EEEEECTTSSEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSS
T ss_pred             EEEEEecCCCEEEEEeC---------------C-CeEEEEECCC---CceEEEEc-----C----CCCcEEEEEEecCCC
Confidence            88999999999998765               2 2344444322   11222111     0    1245678999995  


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      +.+|+++. .++.|.+||+..   ...+..+. +.                              .+....++|+|||++
T Consensus       713 ~~~l~sg~-~d~~v~vwd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          713 HLLLATGS-NDFFLKLWDLNQ---KECRNTMF-GH------------------------------TNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             CCEEEEEE-TTSCEEEEETTS---SSEEEEEC-CC------------------------------SSCEEEEEECSSTTE
T ss_pred             ceEEEEEe-CCCeEEEEECCC---cchhheec-CC------------------------------CCCEEEEEEecCCCE
Confidence            45666666 688999999854   22333221 11                              125788999999999


Q ss_pred             EEEEcC--CCCCCC
Q psy11412        271 IYVSSS--LFSPWD  282 (290)
Q Consensus       271 L~Van~--~~~~~~  282 (290)
                      |+++..  .+.-|+
T Consensus       758 l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          758 LASCSADGTLRLWD  771 (1249)
T ss_dssp             EEEEESSSEEEEEE
T ss_pred             EEEEECCCeEEEEe
Confidence            999865  455565

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.93  E-value=4.6e-08  Score=100.24  Aligned_cols=154  Identities=11%  Similarity=0.066  Sum_probs=97.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.+|++++.+.+||+++...+.|..+++...........+ +..                             .-..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~~-----------------------------~l~~  472 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISR-----------------------------DIQA  472 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS-----------------------------SCSC
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-Eec-----------------------------CCCC
Confidence            3478999999999999999998999999988531100000000 110                             0157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |.+||+++.++.||+++...+.|.+...     +|...           ..+.   .        .....|.+|+|+|.+
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~l-----dG~~~-----------~~l~---~--------~~l~~P~gIaVDp~~  525 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF---R--------ENGSKPRAIVVDPVH  525 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEET-----TSSSE-----------EEEE---E--------CTTCCEEEEEEETTT
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeC-----CCCeE-----------EEEE---e--------CCCCCcceEEEecCC
Confidence            9999999999999999763322221110     11100           0000   0        011358899999999


Q ss_pred             CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      .+||+++++. +.|.++++. ....+.+.  ..+.                               .+|++|+|+|++++
T Consensus       526 g~LYwtD~g~~~~I~~~~~d-G~~~~~lv--~~~l-------------------------------~~P~GLavD~~~~~  571 (791)
T 3m0c_C          526 GFMYWTDWGTPAKIKKGGLN-GVDIYSLV--TENI-------------------------------QWPNGITLDLLSGR  571 (791)
T ss_dssp             TEEEEEECSSSCEEEEEETT-SCCEEEEE--CSSC-------------------------------SCEEEEEEETTTTE
T ss_pred             CCEEEecCCCCCeEEEEecC-CCceEEEE--eCCC-------------------------------CCceEEEEecCCCe
Confidence            9999999987 788888774 21111111  1111                               27999999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||++..
T Consensus       572 LYwaD~  577 (791)
T 3m0c_C          572 LYWVDS  577 (791)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999975

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.93  E-value=5e-08  Score=86.43  Aligned_cols=191  Identities=10%  Similarity=0.063  Sum_probs=100.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.+++++|||+ ||+++.+.+.|.+||..+. ..+.+.....+                             .....
T Consensus        68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~-----------------------------~~~~~  116 (296)
T 3e5z_A           68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGG-EWESIADSFEG-----------------------------KKLNS  116 (296)
T ss_dssp             CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTC-CEEEEECEETT-----------------------------EECCC
T ss_pred             CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCC-cEEEEeeccCC-----------------------------CCCCC
Confidence            34689999999998 5677776789999997542 22222110000                             01146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCccee--ecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKE--IYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      |+.++++|+|+ +|+++...+..+..  .........+.+..++.     ...+..+         ......+.++++||
T Consensus       117 ~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~---------~~~~~~~~gi~~s~  181 (296)
T 3e5z_A          117 PNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----DGTLSAP---------IRDRVKPNGLAFLP  181 (296)
T ss_dssp             CCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----TSCEEEE---------ECCCSSEEEEEECT
T ss_pred             CCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECC-----CCCEEEe---------ecCCCCCccEEECC
Confidence            88899999998 56653200000000  00000000111211111     0111100         00123578899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCc-eEeeEE------eeCceecC--------CCceEEecCCCCCCCCCcceeeccc
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQI------FLGGKIQS--------DSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~~i------~~Gg~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                      ||+.| +++..++.|.+||+...+.. .....+      +.+-.+.+        ++.|.+++..+       ..+.-..
T Consensus       182 dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g-------~~~~~~~  253 (296)
T 3e5z_A          182 SGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDG-------DELGRVL  253 (296)
T ss_dssp             TSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTS-------CEEEEEE
T ss_pred             CCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCC-------CEEEEEE
Confidence            99999 88878899999999633332 111111      01111222        34455555432       1122222


Q ss_pred             ccCCcceEEE-ccCCCEEEEEcC
Q psy11412        255 FTGSSQMFQL-SLDGKRIYVSSS  276 (290)
Q Consensus       255 ~~~~P~~~a~-sPDG~~L~Van~  276 (290)
                      ....|..++| +|||++||+++.
T Consensus       254 ~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          254 TPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CSSCCCEEEEESTTSCEEEEEET
T ss_pred             CCCCceeEEEECCCCCEEEEEcC
Confidence            2224999999 699999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.92  E-value=2.9e-08  Score=90.45  Aligned_cols=180  Identities=9%  Similarity=0.063  Sum_probs=95.8

Q ss_pred             CceEEEEEc----CCCCE-EEEEeCCCCeEEEEEcCC------CCCceeee--EEeecccccCCCceEEecCCCCcCCCC
Q psy11412         33 AMVTDILIS----LDDRY-LYTSNWMHGDIRQYDIRD------TAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPD   99 (290)
Q Consensus        33 ~~p~~va~S----pDGr~-Lyva~~~~g~V~v~dv~d------~~~~~~~~--~i~~g~~~~~~~~~~v~~~~~~~~~~~   99 (290)
                      ..+..++++    |++++ |++++. +|.|.+||+..      ........  .+...  ..               .. 
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~-  182 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATDV-KGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VE---------------SP-  182 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEET-TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--EC---------------CS-
T ss_pred             CcEEEEEEeeccCCCCceEEEEEeC-CCcEEEEeCCccccccccceeeccCcceeeee--ec---------------cc-
Confidence            568899999    99999 887765 79999999975      22222000  11000  00               00 


Q ss_pred             cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412        100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR  179 (290)
Q Consensus       100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  179 (290)
                            ......+..++|+|+| ++++...                ++.+.+++...   .+.+..+...  .+. ....
T Consensus       183 ------~~~~~~i~~~~~~~~~-~l~~~~~----------------dg~i~i~d~~~---~~~~~~~~~~--~~h-~~~~  233 (397)
T 1sq9_A          183 ------MTPSQFATSVDISERG-LIATGFN----------------NGTVQISELST---LRPLYNFESQ--HSM-INNS  233 (397)
T ss_dssp             ------SSSCCCCCEEEECTTS-EEEEECT----------------TSEEEEEETTT---TEEEEEEECC--C----CCC
T ss_pred             ------cCCCCCceEEEECCCc-eEEEEeC----------------CCcEEEEECCC---CceeEEEecc--ccc-cccC
Confidence                  0012467889999999 7776654                12333333321   1111111100  000 0002


Q ss_pred             CceeEEEEccCCCEEEEEeCCC---CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMH---GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~---~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                      .....++|+|||++|+++. .+   +.|.+||+..   .+.+..+.....                  |....+......
T Consensus       234 ~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~---~~~~~~~~~~~~------------------~~~~~~~~~~~~  291 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEF---GERIGSLSVPTH------------------SSQASLGEFAHS  291 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTT---CCEEEEECBC--------------------------CCBSBS
T ss_pred             CccceEEECCCCCEEEEEe-cCCCCceEEEEECCC---CcccceeccCcc------------------cccccccccccC
Confidence            3567899999999999887 56   8999999864   233333322000                  000000000001


Q ss_pred             CCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      +....++|+|||++|++++.  .+.-|+
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            25789999999999999864  344444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.91  E-value=4.7e-08  Score=89.52  Aligned_cols=149  Identities=11%  Similarity=0.116  Sum_probs=96.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.++++++.+..||.++...+.|..++.......+.+  +..+                               -..|.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~-------------------------------l~~p~   82 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSG-------------------------------LLSPD   82 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE--EEEC-------------------------------CSCCC
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE--EcCC-------------------------------CCCcc
Confidence            57789999999999999999999999987542111111  1111                               14789


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      ++++++.++.||+++...+.+.++..     +|...           ..+.       .    .....|.+|+++|++++
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~-----dG~~~-----------~~l~-------~----~~~~~P~giavdp~~g~  135 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNL-----DGSLR-----------KVLF-------W----QELDQPRAIALDPSSGF  135 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE-------C----SSCSSEEEEEEEGGGTE
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEEC-----CCCcE-----------EEEE-------e----CCCCCccEEEEeCCCCE
Confidence            99999999999998763222211100     11000           0000       0    01246889999999999


Q ss_pred             EEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      ||+++++ .+.|..++.+ ....+.+.  ..+.                               ..|++++|+|++++||
T Consensus       136 ly~td~~~~~~I~r~~~d-G~~~~~~~--~~~l-------------------------------~~Pnglavd~~~~~lY  181 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMD-GSSRFIII--NSEI-------------------------------YWPNGLTLDYEEQKLY  181 (318)
T ss_dssp             EEEEECSSSCEEEEEETT-SCSCEEEE--CSSC-------------------------------SCEEEEEEETTTTEEE
T ss_pred             EEEEecCCCCEEEEEEcC-CCCeEEEE--ECCC-------------------------------CCccEEEEeccCCEEE
Confidence            9999986 5788888763 11111111  1111                               2799999999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      +++.
T Consensus       182 ~aD~  185 (318)
T 3sov_A          182 WADA  185 (318)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.91  E-value=2.7e-08  Score=92.69  Aligned_cols=58  Identities=9%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc-eEEEccCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ-MFQLSLDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~a~sPDG  268 (290)
                      +|.++.++. .+++|.+||+..   .+.+.++. |..                              +.+. .++|||||
T Consensus       294 sg~~lASgS-~DgTIkIWDl~t---Gk~l~tL~-gH~------------------------------~~vvs~vafSPDG  338 (356)
T 2w18_A          294 KDHCAAAIL-TSGTIAIWDLLL---GQCTALLP-PVS------------------------------DQHWSFVKWSGTD  338 (356)
T ss_dssp             ETTEEEEEE-TTSCEEEEETTT---CSEEEEEC-CC--------------------------------CCCCEEEECSSS
T ss_pred             CCCEEEEEc-CCCcEEEEECCC---CcEEEEec-CCC------------------------------CCeEEEEEECCCC
Confidence            366766665 689999999964   34444432 221                              1234 48999999


Q ss_pred             CEEEEEcC--CCCCCC
Q psy11412        269 KRIYVSSS--LFSPWD  282 (290)
Q Consensus       269 ~~L~Van~--~~~~~~  282 (290)
                      ++|+.++.  ++.-||
T Consensus       339 ~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             SEEEEECTTSCEEEEE
T ss_pred             CEEEEEECCCcEEEec
Confidence            99999864  444444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.91  E-value=5.3e-08  Score=86.75  Aligned_cols=157  Identities=11%  Similarity=0.041  Sum_probs=92.4

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      .....+..++++|++  |+++. .++.|.+||+.. .......  ....                              .
T Consensus       148 ~~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~------------------------------~  192 (342)
T 1yfq_A          148 KVKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTI--EESG------------------------------L  192 (342)
T ss_dssp             SSCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEE--EECS------------------------------C
T ss_pred             eeCCceEEEEecCCc--EEEEe-CCCeEEEEECCcccccccee--eecC------------------------------C
Confidence            356688999999998  66665 478999999975 3221111  1111                              0


Q ss_pred             CCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-e--cccccccCccc--cCccccCCCCce
Q psy11412        109 TGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-Q--RNEMRSMPLSS--LGSWKYPARSMV  182 (290)
Q Consensus       109 g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-~--~~~i~~~p~~~--~~~~~~~~~~~~  182 (290)
                      ...++.++|+| +|+++++.+..               + .+.+++..... .  ......+....  ..+  .......
T Consensus       193 ~~~i~~i~~~~~~~~~l~~~~~d---------------g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i  254 (342)
T 1yfq_A          193 KYQIRDVALLPKEQEGYACSSID---------------G-RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD--TNLAYPV  254 (342)
T ss_dssp             SSCEEEEEECSGGGCEEEEEETT---------------S-EEEEEECCTTCCSTTCTTCEEEECCCCCTTC--CSSCCCE
T ss_pred             CCceeEEEECCCCCCEEEEEecC---------------C-cEEEEEEcCCCcccccccceeeecccccccc--cccceeE
Confidence            14678899999 99999987651               1 22222211100 0  00000000000  000  0001257


Q ss_pred             eEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC-ceecCCCceEEecCCCCCCCCCcceeecccccCCcce
Q psy11412        183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-GKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  261 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G-g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~  261 (290)
                      ..++|+|||++|+++. .++.|.+||+.+   .+.+..+..- .                               +....
T Consensus       255 ~~~~~s~~~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~~~h~-------------------------------~~v~~  299 (342)
T 1yfq_A          255 NSIEFSPRHKFLYTAG-SDGIISCWNLQT---RKKIKNFAKFNE-------------------------------DSVVK  299 (342)
T ss_dssp             EEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCCCSS-------------------------------SEEEE
T ss_pred             EEEEEcCCCCEEEEec-CCceEEEEcCcc---HhHhhhhhcccC-------------------------------CCceE
Confidence            7899999999999888 689999999854   3444433221 1                               13466


Q ss_pred             EEEccCCCEEEEEcC
Q psy11412        262 FQLSLDGKRIYVSSS  276 (290)
Q Consensus       262 ~a~sPDG~~L~Van~  276 (290)
                      ++  |||++|+++..
T Consensus       300 ~~--~~~~~l~s~s~  312 (342)
T 1yfq_A          300 IA--CSDNILCLATS  312 (342)
T ss_dssp             EE--ECSSEEEEEEE
T ss_pred             ec--CCCCeEEEEec
Confidence            67  99999999865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.90  E-value=1.6e-09  Score=109.49  Aligned_cols=170  Identities=10%  Similarity=0.099  Sum_probs=102.9

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      .++++...++....   +....|.+|++++++.+||+++...+.|..+++...........+...               
T Consensus       389 ~~id~~~~~~~~~~---~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------------  450 (699)
T 1n7d_A          389 RKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------  450 (699)
T ss_dssp             CEECTTSCCEECCS---CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------------
T ss_pred             EEEeCCCCcceeee---ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------------
Confidence            45566555544433   345578999999999999999998899999987531100000000000               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                     ....|.+|++++.++.||+++...+.+.+               ++...   .. +..+    +.
T Consensus       451 ---------------~~~~P~glavD~~~g~LY~tD~~~~~I~v---------------~d~dg---~~-~~~l----~~  492 (699)
T 1n7d_A          451 ---------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSV---------------ADTKG---VK-RKTL----FR  492 (699)
T ss_dssp             ---------------CC--CCCEECCCSSSBCEECCTTTSCEEE---------------EBSSS---CC-EEEE----CC
T ss_pred             ---------------CCCCcceEEEEeeCCcEEEEeccCCeEEE---------------EecCC---Cc-eEEE----Ee
Confidence                           01468889999999999998763322221               11100   00 0000    00


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          .....|.+|+++|++++||+++++. +.|.++++.. ...+.+.   ..+                          
T Consensus       493 ----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~---~~~--------------------------  538 (699)
T 1n7d_A          493 ----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV---TEN--------------------------  538 (699)
T ss_dssp             ----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES---CSS--------------------------
T ss_pred             ----CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE---eCC--------------------------
Confidence                0113467899999999999999876 7888876632 1111111   001                          


Q ss_pred             cccccCCcceEEEccCCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                          -..|++|+|+|++++||+++.
T Consensus       539 ----l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          539 ----IQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             ----CSSCCCEEECTTTCCEEEEET
T ss_pred             ----CCCccEEEEeccCCEEEEEec
Confidence                027999999999999999976

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.2e-07  Score=95.96  Aligned_cols=191  Identities=13%  Similarity=0.127  Sum_probs=113.0

Q ss_pred             CceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      +.+.+++|+|+  |++|++++. +|+|.+||+... ....+......                               ..
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~-Dg~I~vwd~~~~-~~~~~~~~~~h-------------------------------~~  100 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSY-DGKVLIWKEENG-RWSQIAVHAVH-------------------------------SA  100 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEET-TSCEEEEEEETT-EEEEEEEECCC-------------------------------SS
T ss_pred             CceEEEEecCCCCCCEEEEEeC-CCeEEEEECCCC-cccccccccCC-------------------------------CC
Confidence            35789999998  999988875 899999999752 21222211110                               14


Q ss_pred             CceEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        111 SSQMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       111 gPr~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      ....++|+|+  |+.+++++.               + +.+.++++...   .....   ....    ........++++
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs~---------------d-g~I~vwdl~~~---~~~~~---~~~~----~~~~~v~~l~~~  154 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVASS---------------D-GKVSVVEFKEN---GTTSP---IIID----AHAIGVNSASWA  154 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEET---------------T-SEEEEEECCSS---SCCCC---EEEE----CCSSCEEEEEEC
T ss_pred             CeEEEEECCCCCCCEEEEEeC---------------C-CcEEEEEeecC---CCcce---eEee----cCCCceEEEEec
Confidence            6788999999  999998765               2 23433443221   00000   0000    112456789999


Q ss_pred             c-------------CCCEEEEEeCCCCcEEEEEecCCCCc-eEeeE----------E---ee---Ccee---cCCCceEE
Q psy11412        189 L-------------DDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQ----------I---FL---GGKI---QSDSGVTV  235 (290)
Q Consensus       189 p-------------DGr~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~~----------i---~~---Gg~~---~~~~~v~~  235 (290)
                      |             ||++|+++. .++.|.+||+...... ..+..          +   +.   |..+   ..|+.|.+
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             CcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence            9             699999888 6899999999643211 11111          1   11   1111   45778889


Q ss_pred             ecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        236 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      |+...................+....++|+|||++|++++.  .+.-|+-
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            88655321111111111112345788999999999999865  4555653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.89  E-value=1.7e-08  Score=106.24  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.++..++.....   .-...+..++++|+++.+ +++ .+|+|.+||+.+..   ....+...               
T Consensus      1028 ~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~l~-~~~-~dg~v~vwd~~~~~---~~~~~~~~--------------- 1084 (1249)
T 3sfz_A         1028 QVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLL-SWS-FDGTVKVWNVITGR---IERDFTCH--------------- 1084 (1249)
T ss_dssp             EEEETTTTEEECCB---CCSSCEEEEEECSSSEEE-EEE-SSSEEEEEETTTTC---CCEEEECC---------------
T ss_pred             EEEECCCCceEEEe---cCCCcEEEEEEcCCCcEE-EEE-CCCcEEEEECCCCc---eeEEEccc---------------
Confidence            45555554444322   334578899999988654 444 47899999997632   22222111               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++|+|||+++++++.               ++ .+..++...   ...+..     ..
T Consensus      1085 ----------------~~~v~~~~~s~d~~~l~s~s~---------------d~-~v~iwd~~~---~~~~~~-----l~ 1124 (1249)
T 3sfz_A         1085 ----------------QGTVLSCAISSDATKFSSTSA---------------DK-TAKIWSFDL---LSPLHE-----LK 1124 (1249)
T ss_dssp             ----------------SSCCCCEEECSSSSSCEEECC---------------SS-CCCEECSSS---SSCSBC-----CC
T ss_pred             ----------------CCcEEEEEECCCCCEEEEEcC---------------CC-cEEEEECCC---cceeee-----ec
Confidence                            135677999999999998765               22 233333322   111111     00


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +    .......++|||||++|+++. .++.|.+||+.+
T Consensus      1125 ~----h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A         1125 G----HNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSD 1158 (1249)
T ss_dssp             C----CSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSS
T ss_pred             c----CCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCC
Confidence            1    123567899999999999988 688999999964

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.89  E-value=5.9e-08  Score=87.93  Aligned_cols=141  Identities=7%  Similarity=0.052  Sum_probs=83.1

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.|+..++..... .......+..++|+|||++|++++ .+|.|++||+.......  ..+..++              
T Consensus       152 ~~wd~~~~~~~~~~-~~~~~~~i~~~~~~pdg~~lasg~-~dg~i~iwd~~~~~~~~--~~~~~~h--------------  213 (343)
T 3lrv_A          152 GFQSYEDDSQYIVH-SAKSDVEYSSGVLHKDSLLLALYS-PDGILDVYNLSSPDQAS--SRFPVDE--------------  213 (343)
T ss_dssp             EEEESSSSCEEEEE-CCCSSCCCCEEEECTTSCEEEEEC-TTSCEEEEESSCTTSCC--EECCCCT--------------
T ss_pred             EEEECCCCcEEEEE-ecCCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCCCCc--cEEeccC--------------
Confidence            45566655442211 112233577899999999998776 48999999997643220  1111110              


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++|+|+|++|+++++                + .+.+|++..   ...+..+......
T Consensus       214 ----------------~~~v~~l~fs~~g~~l~s~~~----------------~-~v~iwd~~~---~~~~~~~~~~~~~  257 (343)
T 3lrv_A          214 ----------------EAKIKEVKFADNGYWMVVECD----------------Q-TVVCFDLRK---DVGTLAYPTYTIP  257 (343)
T ss_dssp             ----------------TSCEEEEEECTTSSEEEEEES----------------S-BEEEEETTS---STTCBSSCCCBC-
T ss_pred             ----------------CCCEEEEEEeCCCCEEEEEeC----------------C-eEEEEEcCC---CCcceeecccccc
Confidence                            146788999999999998764                1 233333322   1111111100000


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                        ..+.  ....++|+|||++|+++..+++.|.+|++..
T Consensus       258 --~~~~--~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          258 --EFKT--GTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             --------CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             --cccc--cceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence              0000  1135999999999999874489999999954

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.89  E-value=1.3e-08  Score=101.44  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++|+|||++|++++. +++|++||+...    ....+...+    .              .+         ....
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~-D~~i~iwd~~~~----~~~~~~~~~----~--------------~h---------~~~v  520 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASR-DRTIKLWNTLGE----CKYTISEGG----E--------------GH---------RDWV  520 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEET-TSCEEEECTTSC----EEEEECSST----T--------------SC---------SSCE
T ss_pred             CCEEEEEEeCCCCEEEEEeC-CCEEEEEECCCC----cceeeccCC----C--------------CC---------CCcE
Confidence            35789999999999988775 899999997431    111111100    0              00         1357


Q ss_pred             eEEEEccCC--CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSLDG--KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsPdG--~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+|++  ..++..+.               ++ .+.+++...   .+....     ..+    .......++||||
T Consensus       521 ~~~~~~~~~~~~~l~s~s~---------------d~-~v~vwd~~~---~~~~~~-----~~~----h~~~v~~v~~spd  572 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASW---------------DK-TVKVWNLSN---CKLRST-----LAG----HTGYVSTVAVSPD  572 (694)
T ss_dssp             EEEEECSCSSSCEEEEEET---------------TS-CEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECTT
T ss_pred             EEEEEeCCCCcceEEEEeC---------------CC-eEEEEECCC---CcEEEE-----EcC----CCCCEEEEEEeCC
Confidence            789999998  45655443               22 333344322   111111     001    1245778999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      |++|+++. .+++|.+||+..   .+.+..+...                                .....++|+|||.+
T Consensus       573 g~~l~sg~-~Dg~i~iwd~~~---~~~~~~~~~~--------------------------------~~v~~~~~sp~~~~  616 (694)
T 3dm0_A          573 GSLCASGG-KDGVVLLWDLAE---GKKLYSLEAN--------------------------------SVIHALCFSPNRYW  616 (694)
T ss_dssp             SSEEEEEE-TTSBCEEEETTT---TEEEECCBCS--------------------------------SCEEEEEECSSSSE
T ss_pred             CCEEEEEe-CCCeEEEEECCC---CceEEEecCC--------------------------------CcEEEEEEcCCCcE
Confidence            99999888 689999999954   2333322111                                14678999999999


Q ss_pred             EEEEcC-CCCCCC
Q psy11412        271 IYVSSS-LFSPWD  282 (290)
Q Consensus       271 L~Van~-~~~~~~  282 (290)
                      |+++.. .+.-||
T Consensus       617 l~~~~~~~i~iwd  629 (694)
T 3dm0_A          617 LCAATEHGIKIWD  629 (694)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEcCCCEEEEE
Confidence            988855 344444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.89  E-value=1.7e-07  Score=85.00  Aligned_cols=199  Identities=13%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             CCceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         32 PAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        32 ~~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .+.+..++|+| ||++|++++. +|.|.+||+................ .. .        ..  ..       +  -..
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~-~~-~--------~~--~~-------~--~~~  100 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGS-DGVIVLYDLENSSRQSYYTCKAVCS-IG-R--------DH--PD-------V--HRY  100 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEET-TSCEEEEECCCCSSSSCEEECEEEE-EC-T--------TC--TT-------C--CSS
T ss_pred             CCcEEEEEEecCCCCEEEEEcC-CCeEEEEECCCCcccceEecccccc-cc-c--------cc--cc-------c--CCC
Confidence            34678999999 9999998875 8899999997643222211100000 00 0        00  00       0  125


Q ss_pred             CceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        111 SSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       111 gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      .+..++|+| +++.|++++.                ++.+.+++...   .+.+..          +........+.++|
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~----------------d~~i~iwd~~~---~~~~~~----------~~~~~~~~~~~~~~  151 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSF----------------DKTLKVWDTNT---LQTADV----------FNFEETVYSHHMSP  151 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEET----------------TSEEEEEETTT---TEEEEE----------EECSSCEEEEEECS
T ss_pred             cEEEEEEccCCCcEEEEEeC----------------CCeEEEeeCCC---Ccccee----------ccCCCceeeeEeec
Confidence            678899999 7777777654                12333343322   111111          00123456678888


Q ss_pred             ---CCCEEEEEeCCCCcEEEEEecCCCCceE-------eeEE---eeCce-e---cCCCceEEecCCCCCCCC-------
Q psy11412        190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVL-------VGQI---FLGGK-I---QSDSGVTVIDDPELDKQP-------  245 (290)
Q Consensus       190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~-------v~~i---~~Gg~-~---~~~~~v~~~~~~~~~~~~-------  245 (290)
                         ++++|+++. .++.|.+||+........       +..+   +.+.. +   ..++.|.+|+........       
T Consensus       152 ~~~~~~~~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~  230 (408)
T 4a11_B          152 VSTKHCLVAVGT-RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN  230 (408)
T ss_dssp             SCSSCCEEEEEE-SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred             CCCCCcEEEEEc-CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence               555888887 688999999964321111       1111   11221 1   567789999875422000       


Q ss_pred             ----CcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        246 ----DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       246 ----~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                          ......-....+....++|+|||++|+++..  .+.-|+
T Consensus       231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence                0000000011235789999999999999865  444554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.88  E-value=5.2e-08  Score=90.09  Aligned_cols=117  Identities=12%  Similarity=0.058  Sum_probs=78.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++++++.++.||+++...+.|.+++.+. ...+.+.   ..                              ....|+
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~---~~------------------------------~l~~P~  162 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL---WQ------------------------------SLEKPR  162 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CT------------------------------TCSCEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCC-CceEEEE---eC------------------------------CCCCcc
Confidence            6899999999999999999899999999753 2222210   11                              015799


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +|+++|++.+||+++...              ...+..++...   . ....+    +.    ..-..|.+|+|+|++++
T Consensus       163 ~iavdp~~g~ly~td~~~--------------~~~I~r~~~dG---~-~~~~~----~~----~~~~~PnGla~d~~~~~  216 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGN--------------TPRIEASSMDG---S-GRRII----AD----THLFWPNGLTIDYAGRR  216 (349)
T ss_dssp             EEEEETTTTEEEEEECSS--------------SCEEEEEETTS---C-SCEES----CC----SSCSCEEEEEEETTTTE
T ss_pred             eEEEecCcCeEEEeccCC--------------CCEEEEEeCCC---C-CcEEE----EE----CCCCCcceEEEeCCCCE
Confidence            999999999999987522              01121111100   0 00000    00    01146889999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      ||+++...+.|..+|++
T Consensus       217 lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          217 MYWVDAKHHVIERANLD  233 (349)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            99999999999999974

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.88  E-value=7.8e-08  Score=87.39  Aligned_cols=112  Identities=14%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|.+++|+|||++||+++...+.+-++....  .++-.+.  .      .+......         .....+.++++++
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~--~~Gl~~~--~------~~~~~~~~---------~~~~~p~gi~~d~  239 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA--RTGLPTG--K------AEVFIDST---------GIKGGMDGSVCDA  239 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCT--TTCCBSS--C------CEEEEECT---------TSSSEEEEEEECT
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEccc--ccCCccc--C------ceEEEECC---------CCCCCCCeeEECC
Confidence            36788999999999999875322222211100  0010000  0      00010000         0123567899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc-cCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS-LDG  268 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s-PDG  268 (290)
                      ||+ ||+++++.+.|.+||. +   .+.+..+....                               ..|..++|+ ||+
T Consensus       240 ~G~-lwva~~~~~~v~~~d~-~---g~~~~~i~~~~-------------------------------~~~~~~af~g~d~  283 (326)
T 2ghs_A          240 EGH-IWNARWGEGAVDRYDT-D---GNHIARYEVPG-------------------------------KQTTCPAFIGPDA  283 (326)
T ss_dssp             TSC-EEEEEETTTEEEEECT-T---CCEEEEEECSC-------------------------------SBEEEEEEESTTS
T ss_pred             CCC-EEEEEeCCCEEEEECC-C---CCEEEEEECCC-------------------------------CCcEEEEEecCCC
Confidence            996 7888877788999975 2   24445554433                               158999998 999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      ++||+++.
T Consensus       284 ~~L~vt~~  291 (326)
T 2ghs_A          284 SRLLVTSA  291 (326)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEec
Confidence            99999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.87  E-value=5.6e-09  Score=103.63  Aligned_cols=127  Identities=11%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..+++||||+++|+ + .+|+|.+||+.... ...+  + .++.                          . ....+
T Consensus        17 ~~~~~~~~spdg~~~~~-~-~dg~i~~~d~~~g~-~~~~--~-~~~~--------------------------~-~~~~v   63 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-E-QKGTVRLWNVETNT-STVL--I-EGKK--------------------------I-ESLRA   63 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-C-SSSCEEEBCGGGCC-CEEE--E-CTTT--------------------------T-TTTTC
T ss_pred             ccccccEEcCCCcEEEE-e-CCCCEEEEECCCCc-EEEE--e-cccc--------------------------c-ccccc
Confidence            35778899999998875 3 57899999997632 2211  1 1100                          0 00147


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|||||++|+.+......+..       .....+.++++..   .+. ..+...  .+    ....+..++|||||+
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~-------~~~~~i~~~d~~~---~~~-~~l~~~--~~----~~~~~~~~~~SPdG~  126 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQH-------SYTGYYVLSKIPH---GDP-QSLDPP--EV----SNAKLQYAGWGPKGQ  126 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSS-------CCCSEEEEEESSS---CCC-EECCCT--TC----CSCCCSBCCBCSSTT
T ss_pred             ceEEECCCCCEEEEEecCccceee-------cceeeEEEEECCC---Cce-EeccCC--cc----ccccccccEECCCCC
Confidence            789999999998887552211100       0012233333322   111 111100  00    012255689999999


Q ss_pred             EEEEEeCCCCcEEEEEecC
Q psy11412        193 YLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|+.+..  ++|.+||+..
T Consensus       127 ~la~~~~--~~i~~~~~~~  143 (723)
T 1xfd_A          127 QLIFIFE--NNIYYCAHVG  143 (723)
T ss_dssp             CEEEEET--TEEEEESSSS
T ss_pred             EEEEEEC--CeEEEEECCC
Confidence            8877663  6899999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.87  E-value=5.5e-08  Score=93.51  Aligned_cols=119  Identities=12%  Similarity=-0.004  Sum_probs=75.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      .+.+..++|||||++|+++.  ++.|.+|++.+...+ +....+ .++                              ..
T Consensus        18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~-~~h------------------------------~~   64 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQF-TGH------------------------------GS   64 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEE-CTT------------------------------TT
T ss_pred             cCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEE-ecC------------------------------CC
Confidence            44678899999999999887  679999999753111 222221 111                              13


Q ss_pred             C-ceEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-----ecccccccCccccCccccCCCCce
Q psy11412        111 S-SQMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-----QRNEMRSMPLSSLGSWKYPARSMV  182 (290)
Q Consensus       111 g-Pr~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~p~~~~~~~~~~~~~~~  182 (290)
                      . +..++|+|  ||++|++++.               + +.+.+|+.....     ....+..+.     .    .....
T Consensus        65 ~~v~~~~~sp~~~~~~l~s~~~---------------d-g~v~vw~~~~~~~~~~~~~~~~~~~~-----~----~~~~v  119 (615)
T 1pgu_A           65 SVVTTVKFSPIKGSQYLCSGDE---------------S-GKVIVWGWTFDKESNSVEVNVKSEFQ-----V----LAGPI  119 (615)
T ss_dssp             SCEEEEEECSSTTCCEEEEEET---------------T-SEEEEEEEEEEGGGTEEEEEEEEEEE-----C----CSSCE
T ss_pred             ceEEEEEECcCCCCCEEEEecC---------------C-CEEEEEeCCCCcccccccccccchhh-----c----ccccE
Confidence            5 78899999  9999998765               2 244445553210     001111100     0    12457


Q ss_pred             eEEEEccCCCEEEEEeCCC---CcEEEEE
Q psy11412        183 TDILISLDDRYLYTSNWMH---GDIRQYD  208 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~---~~V~v~D  208 (290)
                      ..++|||||++|+++....   +.|.+||
T Consensus       120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d  148 (615)
T 1pgu_A          120 SDISWDFEGRRLCVVGEGRDNFGVFISWD  148 (615)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred             EEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence            8899999999999887432   5788886

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.86  E-value=9.6e-08  Score=90.06  Aligned_cols=117  Identities=9%  Similarity=0.012  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.++++++.++.||+++...+.|.+++++. ...+.+.   ..                              ....|
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~---~~------------------------------~~~~P  204 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF---RE------------------------------NGSKP  204 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEE---EC------------------------------SSCCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEE---eC------------------------------CCCCc
Confidence            37999999999999999999999999998753 2222211   11                              01579


Q ss_pred             eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ++|+++|.+.+||+++... ..+.+..     -+|...           ..+.  .         ..-..|.+|+|++++
T Consensus       205 ~~iavdp~~g~ly~td~~~~~~I~~~~-----~dG~~~-----------~~~~--~---------~~l~~P~glavd~~~  257 (400)
T 3p5b_L          205 RAIVVDPVHGFMYWTDWGTPAKIKKGG-----LNGVDI-----------YSLV--T---------ENIQWPNGITLDLLS  257 (400)
T ss_dssp             EEEEEETTTTEEEEEECSSSCCEEEEE-----TTSCSC-----------EEEE--C---------SSCSCEEEEEEETTT
T ss_pred             ceEEEecccCeEEEEeCCCCCEEEEEe-----CCCCcc-----------EEEE--E---------CCCCceEEEEEEeCC
Confidence            9999999999999986411 1111100     011100           0000  0         011468899999999


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++||+++...+.|..+|+.
T Consensus       258 ~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          258 GRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             TEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCEEEEEeCC
Confidence            9999999989999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.86  E-value=7.9e-08  Score=85.36  Aligned_cols=140  Identities=9%  Similarity=0.093  Sum_probs=81.1

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.|+...+.....  ..-.+.+..++|+|||++|++++. +++|++||+..   .+.+..+..+               
T Consensus       198 ~i~d~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~-Dg~i~iwd~~~---~~~~~~~~~~---------------  256 (340)
T 4aow_A          198 KVWNLANCKLKTNH--IGHTGYLNTVTVSPDGSLCASGGK-DGQAMLWDLNE---GKHLYTLDGG---------------  256 (340)
T ss_dssp             EEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TCEEEEEETTT---TEEEEEEECS---------------
T ss_pred             EEEECCCCceeeEe--cCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEecc---CceeeeecCC---------------
Confidence            34455544433322  012346789999999999998875 89999999865   3333322211               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                       .....+.|+|++..+.....  +               .+.+++...   ...+.........
T Consensus       257 -----------------~~v~~~~~~~~~~~~~~~~d--~---------------~i~iwd~~~---~~~~~~~~~~~~~  299 (340)
T 4aow_A          257 -----------------DIINALCFSPNRYWLCAATG--P---------------SIKIWDLEG---KIIVDELKQEVIS  299 (340)
T ss_dssp             -----------------SCEEEEEECSSSSEEEEEET--T---------------EEEEEETTT---TEEEEEECCC---
T ss_pred             -----------------ceEEeeecCCCCceeeccCC--C---------------EEEEEECCC---CeEEEecccccee
Confidence                             35677999999987765432  1               222222111   0000000000000


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ............++|||||++|+++. .++.|.+||+..
T Consensus       300 ~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~v~iW~~~t  337 (340)
T 4aow_A          300 TSSKAEPPQCTSLAWSADGQTLFAGY-TDNLVRVWQVTI  337 (340)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEC
T ss_pred             eeccCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCC
Confidence            00001124577899999999999888 689999999964

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.86  E-value=1.4e-07  Score=85.59  Aligned_cols=210  Identities=11%  Similarity=0.046  Sum_probs=114.6

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI   89 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~   89 (290)
                      ++.|+...+.....   .....+..+.++|.   +.+++++.. ++.|.+||+....   .+..+...            
T Consensus       125 ~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~~~~---~~~~~~~~------------  185 (408)
T 4a11_B          125 KVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTR-GPKVQLCDLKSGS---CSHILQGH------------  185 (408)
T ss_dssp             EEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEES-SSSEEEEESSSSC---CCEEECCC------------
T ss_pred             EEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcC-CCeEEEEeCCCcc---eeeeecCC------------
Confidence            45555555444433   34556778888885   448887764 7899999997532   22211111            


Q ss_pred             cCCCCcCCCCcceeeccccCCCceEEEEccCCCE-EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC-
Q psy11412         90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR-IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP-  167 (290)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~-lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p-  167 (290)
                                         ......++|+|++++ |++++. .+               .+..++.....  ..+..+. 
T Consensus       186 -------------------~~~v~~~~~~~~~~~ll~~~~~-dg---------------~i~i~d~~~~~--~~~~~~~~  228 (408)
T 4a11_B          186 -------------------RQEILAVSWSPRYDYILATASA-DS---------------RVKLWDVRRAS--GCLITLDQ  228 (408)
T ss_dssp             -------------------CSCEEEEEECSSCTTEEEEEET-TS---------------CEEEEETTCSS--CCSEECCT
T ss_pred             -------------------CCcEEEEEECCCCCcEEEEEcC-CC---------------cEEEEECCCCC--cccccccc
Confidence                               145788999999996 555443 11               22222221100  0000000 


Q ss_pred             -----ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEee-------------EE--eeCce-
Q psy11412        168 -----LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG-------------QI--FLGGK-  226 (290)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~-------------~i--~~Gg~-  226 (290)
                           .................++|+|||++|+++. .++.|.+||+..........             ..  ..+.. 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                 0000000001124678899999999999888 68899999996422111000             00  00000 


Q ss_pred             --ecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCcc
Q psy11412        227 --IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDKE  284 (290)
Q Consensus       227 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~~  284 (290)
                        ...++.|.+++......   ...+.+.  .+....++|+|||++|++++.  .+.-|+-.
T Consensus       308 ~~~~~~~~i~v~d~~~~~~---~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQ---ITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EEEEETTEEEEEETTTCCE---EEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             EEEecCCEEEEEECcCCcc---eeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence              14567788888654210   0111211  135688999999999999965  55556543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.85  E-value=3.4e-08  Score=94.29  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             ceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .|.+|+++|+  +..||+++.. +.|+.++..+.   .+.. + .+                              ....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g---~v~~-~-~~------------------------------~~~~  183 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ---YVDI-K-TT------------------------------NIGQ  183 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTT---EEEE-E-CC------------------------------CCSC
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCC---EEEE-e-ec------------------------------CCCC
Confidence            6999999995  7889999876 89999987542   2211 1 00                              0157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |.+|+|+++|+ ||+++......           ...+  +....   .....   .    .-.++....|.+|+++|++
T Consensus       184 P~giavd~dG~-lyVad~~~~~~-----------~~gv--~~~~~---~~~~~---~----~~~~~~~~~P~giavd~~~  239 (433)
T 4hw6_A          184 CADVNFTLNGD-MVVVDDQSSDT-----------NTGI--YLFTR---ASGFT---E----RLSLCNARGAKTCAVHPQN  239 (433)
T ss_dssp             EEEEEECTTCC-EEEEECCSCTT-----------SEEE--EEECG---GGTTC---C----EEEEEECSSBCCCEECTTT
T ss_pred             ccEEEECCCCC-EEEEcCCCCcc-----------cceE--EEEEC---CCCee---c----cccccccCCCCEEEEeCCC
Confidence            99999999999 99987521100           0001  00000   00000   0    0001112456789999966


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEE-eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      ..||+++..++.|..||..+   ...+..+ ..+.                              ...+..++|+|||++
T Consensus       240 G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~~------------------------------~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          240 GKIYYTRYHHAMISSYDPAT---GTLTEEEVMMDT------------------------------KGSNFHIVWHPTGDW  286 (433)
T ss_dssp             CCEEECBTTCSEEEEECTTT---CCEEEEEEECSC------------------------------CSSCEEEEECTTSSE
T ss_pred             CeEEEEECCCCEEEEEECCC---CeEEEEEeccCC------------------------------CCCcccEEEeCCCCE
Confidence            67899998889999887642   2221111 1121                              014567999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       287 LYvad~  292 (433)
T 4hw6_A          287 AYIIYN  292 (433)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999976

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.84  E-value=9.2e-08  Score=95.73  Aligned_cols=166  Identities=6%  Similarity=-0.006  Sum_probs=103.2

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      .+.|+..++.....  ..-.+.+..++|+|||++|++++. +|.|.+||+.+.   +.+..+...               
T Consensus        38 ~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~---~~~~~~~~~---------------   96 (814)
T 3mkq_A           38 EIWNYETQVEVRSI--QVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG---EKVVDFEAH---------------   96 (814)
T ss_dssp             EEEETTTTEEEEEE--ECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTC---CEEEEEECC---------------
T ss_pred             EEEECCCCceEEEE--ecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC---cEEEEEecC---------------
Confidence            34555554433332  012346789999999999998875 899999999753   233222111               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ...++.++|+|+|++|++++.               + +.+.+++...   ......    ...
T Consensus        97 ----------------~~~v~~~~~s~~~~~l~~~~~---------------d-g~i~vw~~~~---~~~~~~----~~~  137 (814)
T 3mkq_A           97 ----------------PDYIRSIAVHPTKPYVLSGSD---------------D-LTVKLWNWEN---NWALEQ----TFE  137 (814)
T ss_dssp             ----------------SSCEEEEEECSSSSEEEEEET---------------T-SEEEEEEGGG---TSEEEE----EEE
T ss_pred             ----------------CCCEEEEEEeCCCCEEEEEcC---------------C-CEEEEEECCC---CceEEE----EEc
Confidence                            146788999999999998765               2 2343344321   100000    000


Q ss_pred             ccccCCCCceeEEEEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412        173 SWKYPARSMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (290)
                          ........++|+| ||+.|+++. .+++|.+||+.....   ...+..+.                          
T Consensus       138 ----~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~---~~~~~~~~--------------------------  183 (814)
T 3mkq_A          138 ----GHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTP---NFTLTTGQ--------------------------  183 (814)
T ss_dssp             ----CCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEETTCSSC---SEEEECCC--------------------------
T ss_pred             ----CCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcc---eeEEecCC--------------------------
Confidence                0123567899999 898888888 689999999854221   12221111                          


Q ss_pred             cccccCCcceEEEcc--CCCEEEEEcC
Q psy11412        252 GRRFTGSSQMFQLSL--DGKRIYVSSS  276 (290)
Q Consensus       252 ~~~~~~~P~~~a~sP--DG~~L~Van~  276 (290)
                          ......++|+|  ||++|+++..
T Consensus       184 ----~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          184 ----ERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             ----TTCCCEEEECCSTTCCEEEEECT
T ss_pred             ----CCCEEEEEEEECCCCCEEEEEeC
Confidence                01467899998  9999998865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.84  E-value=8.9e-08  Score=94.92  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC----CeEEEEEcCC
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH----GDIRQYDIRD   64 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~----g~V~v~dv~d   64 (290)
                      .-.++|+..++.....-...-...+.++++||||++|+++....    ..|.+||+.+
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence            35567777655432220011234678999999999999875422    3899999865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.83  E-value=1.1e-07  Score=94.76  Aligned_cols=151  Identities=10%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      -..|.++++++.+.+||+++...+.|..++.+.....+.   +...+                              -..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~---v~~~~------------------------------~~~   85 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN---VVVSG------------------------------LLS   85 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE---EECSS------------------------------CSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE---EEeCC------------------------------CCC
Confidence            347999999999999999999999999888753211111   11110                              047


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |.+||+++.++.||+++...+.+.+...     +|...           +.+.   .        ..-..|.+|+++|.+
T Consensus        86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~-----dG~~~-----------~~l~---~--------~~l~~P~~Iavdp~~  138 (619)
T 3s94_A           86 PDGLACDWLGEKLYWTDSETNRIEVSNL-----DGSLR-----------KVLF---W--------QELDQPRAIALDPSS  138 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE---C--------SSCSCCCCEEEETTT
T ss_pred             cCeEEEEecCCEEEEEeCCCCEEEEEEC-----CCCCE-----------EEEE---e--------CCCCCCceEEEecCC
Confidence            9999999999999999863332222111     11100           0010   0        011357789999999


Q ss_pred             CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      .+||.+++++ ..|...+.+ ....+.+..  ...                               .+|.++++++++++
T Consensus       139 g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~--~~~-------------------------------~~P~Glald~~~~~  184 (619)
T 3s94_A          139 GFMYWTDWGEVPKIERAGMD-GSSRFIIIN--SEI-------------------------------YWPNGLTLDYEEQK  184 (619)
T ss_dssp             TEEEEEECSSSCEEEEEETT-SCSCEEEEC--SSC-------------------------------SSEEEEEEETTTTE
T ss_pred             CeEEEeccCCCCEEEEEECC-CCceEEEEe--CCC-------------------------------CCCcEEEEEccCCE
Confidence            9999999874 567766653 212222210  011                               27999999999999


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       185 LY~aD~  190 (619)
T 3s94_A          185 LYWADA  190 (619)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999976

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.82  E-value=5.5e-08  Score=96.44  Aligned_cols=54  Identities=13%  Similarity=-0.052  Sum_probs=32.7

Q ss_pred             EEEEEecCCCccCCCCC-CCCC---CCceEEEEEcCCCCEEEEE-eC--CCCeEEEEEcCC
Q psy11412         11 ADKVIDIPAKQVQGYPG-GDKV---PAMVTDILISLDDRYLYTS-NW--MHGDIRQYDIRD   64 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~-~~~v---~~~p~~va~SpDGr~Lyva-~~--~~g~V~v~dv~d   64 (290)
                      .-.+.|+..++....+. ....   ......+++||||++|++. +.  ....|.+||+..
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence            45677777665322220 0000   2356789999999999665 32  235788999865

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.82  E-value=1e-07  Score=84.38  Aligned_cols=36  Identities=6%  Similarity=0.128  Sum_probs=25.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      .|.+|++++||+ ||+++  ++.|.+||..    .+.+..+..
T Consensus       219 ~p~~i~~d~~G~-l~v~~--~~~v~~~~~~----g~~~~~~~~  254 (296)
T 3e5z_A          219 KTDGLRVDAGGL-IWASA--GDGVHVLTPD----GDELGRVLT  254 (296)
T ss_dssp             CCCSEEEBTTSC-EEEEE--TTEEEEECTT----SCEEEEEEC
T ss_pred             CCCeEEECCCCC-EEEEc--CCeEEEECCC----CCEEEEEEC
Confidence            456799999997 68887  6789999763    344455543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.82  E-value=4.7e-08  Score=91.61  Aligned_cols=117  Identities=12%  Similarity=0.064  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++++++.++.||+++...+.|.+++.+. ...+.+.   ..+                              -..|+
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~---~~~------------------------------l~~P~  205 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL---WQS------------------------------LEKPR  205 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEE---CSS------------------------------CSCEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEee---cCC------------------------------CCCCc
Confidence            6889999999999999999889999888742 2212211   110                              15799


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +|+++|++.+||+++...              ...+..++... .....+.  .         ..-..|.+|+|+|++++
T Consensus       206 giavdp~~g~ly~td~~~--------------~~~I~r~~~dG-~~~~~~~--~---------~~~~~PnGlavd~~~~~  259 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGN--------------TPRIEASSMDG-SGRRIIA--D---------THLFWPNGLTIDYAGRR  259 (386)
T ss_dssp             EEEEETTTTEEEEEECSS--------------SCEEEEEETTS-CSCEEEE--C---------SSCSCEEEEEEEGGGTE
T ss_pred             EEEEEcCCCeEEEeccCC--------------CCEEEEEeCCC-CCcEEEE--E---------CCCCCeeeEEEeCCCCE
Confidence            999999999999987521              01111111100 0000000  0         01135789999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      ||+++...+.|..+|++
T Consensus       260 lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          260 MYWVDAKHHVIERANLD  276 (386)
T ss_dssp             EEEEETTTTEEEEECTT
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            99999989999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.81  E-value=6.5e-08  Score=89.63  Aligned_cols=63  Identities=11%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.+++++|||+ |||+.. .|.|.+++  + +..+.+..+.+.                            .....+|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~-~g~I~~i~--~-g~~~~~~~~~v~----------------------------~~g~~~p~   78 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAER-PGRIRLFR--E-GRLSTYAELSVY----------------------------HRGESGLL   78 (352)
T ss_dssp             CEEEEEECTTSC-EEEEET-TTEEEEEE--T-TEEEEEEECCCC----------------------------CSTTCSEE
T ss_pred             CceEEEEcCCCe-EEEEeC-CCeEEEEE--C-CCccEeecceEe----------------------------ecCCCCce
Confidence            799999999998 888887 48999988  3 222222211100                            00126899


Q ss_pred             EEEEccC---CCEEEEEcC
Q psy11412        114 MFQLSLD---GKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPd---G~~lYv~ne  129 (290)
                      +|+|+||   +++|||++.
T Consensus        79 gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           79 GLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEECTTTTTSCEEEEEEE
T ss_pred             eEEECCCCCCCCEEEEEEe
Confidence            9999999   899999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.81  E-value=4.9e-08  Score=87.82  Aligned_cols=71  Identities=11%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             CceeEEEEccCC----CEEEEEeCCCCcEEEEEecCCCCceE-eeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412        180 SMVTDILISLDD----RYLYTSNWMHGDIRQYDIRDTAHPVL-VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  254 (290)
Q Consensus       180 ~~~~~i~~SpDG----r~Lyvs~r~~~~V~v~Dv~d~~~~~~-v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (290)
                      .....++|+||+    ++|+++. .+++|.+||+.+...... ...+. +.                             
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~-~~-----------------------------  261 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLH-KF-----------------------------  261 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEE-EC-----------------------------
T ss_pred             CceEEEEecCCCCCCCceEEEEc-CCCeEEEEEccCccccchhhhhhh-cC-----------------------------
Confidence            457889999997    7787777 689999999965221110 01110 00                             


Q ss_pred             ccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        255 FTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       255 ~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                       .+....++|+|||++|++++.  ...-|+
T Consensus       262 -~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          262 -NDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             -SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             -CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence             125788999999999998865  455555

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.80  E-value=1.1e-07  Score=89.13  Aligned_cols=167  Identities=9%  Similarity=0.044  Sum_probs=90.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-------CceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~-------~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      .+.+..++++|++..++++...+|.|.+|++....       ....+..+..                            
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------------------------  179 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG----------------------------  179 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC----------------------------
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC----------------------------
Confidence            44677899999854444444568999999996420       0111111111                            


Q ss_pred             ccccCCCceEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCcee
Q psy11412        105 GRRFTGSSQMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVT  183 (290)
Q Consensus       105 ~~~~g~gPr~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~  183 (290)
                       .  +..+.+++|+|+++ +|++++.                ++.+.++++........... +.....    .....+.
T Consensus       180 -h--~~~v~~l~~~~~~~~~l~s~~~----------------dg~i~vwd~~~~~~~~~~~~-~~~~~~----~h~~~v~  235 (430)
T 2xyi_A          180 -H--QKEGYGLSWNPNLNGYLLSASD----------------DHTICLWDINATPKEHRVID-AKNIFT----GHTAVVE  235 (430)
T ss_dssp             -C--SSCCCCEEECTTSTTEEEEECT----------------TSCEEEEETTSCCBGGGEEE-CSEEEC----CCSSCEE
T ss_pred             -C--CCCeEEEEeCCCCCCeEEEEeC----------------CCeEEEEeCCCCCCCCceec-cceeec----CCCCCEe
Confidence             0  14578899999999 7776543                12233333321000000000 000000    1124578


Q ss_pred             EEEEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412        184 DILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  262 (290)
Q Consensus       184 ~i~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  262 (290)
                      .++++| ++..|+++. .++.|.+||+......+.+..+....                               +.++.+
T Consensus       236 ~v~~~p~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------------------~~v~~i  283 (430)
T 2xyi_A          236 DVAWHLLHESLFGSVA-DDQKLMIWDTRNNNTSKPSHTVDAHT-------------------------------AEVNCL  283 (430)
T ss_dssp             EEEECSSCTTEEEEEE-TTSEEEEEETTCSCSSSCSEEEECCS-------------------------------SCEEEE
T ss_pred             eeEEeCCCCCEEEEEe-CCCeEEEEECCCCCCCcceeEeecCC-------------------------------CCeEEE
Confidence            899999 555555555 78999999996532222222222111                               258899


Q ss_pred             EEccCCCEEE-EEcC--CCCCCC
Q psy11412        263 QLSLDGKRIY-VSSS--LFSPWD  282 (290)
Q Consensus       263 a~sPDG~~L~-Van~--~~~~~~  282 (290)
                      +|+|+|+.++ +++.  .+.-||
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd  306 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWD  306 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEe
Confidence            9999998655 4432  444554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.80  E-value=9.9e-09  Score=93.63  Aligned_cols=50  Identities=6%  Similarity=-0.076  Sum_probs=31.5

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCC-----CCeEEEEEcC
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWM-----HGDIRQYDIR   63 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~-----~g~V~v~dv~   63 (290)
                      .-.++|+..++.....   .-.....++++|| ||++|+.+...     ...|.++|..
T Consensus       169 ~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          169 RLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             EEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             eEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            4456676665543322   2234578899999 99988766543     2367777764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.80  E-value=1.6e-07  Score=81.92  Aligned_cols=145  Identities=11%  Similarity=0.148  Sum_probs=89.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.+++++++|+ ||+++...+.|.+|+. + +....   +....                             ....
T Consensus       145 ~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~-g~~~~---~~~~~-----------------------------~~~~  189 (300)
T 2qc5_A          145 GSYPAFITLGSDNA-LWFTENQNNSIGRITN-T-GKLEE---YPLPT-----------------------------NAAA  189 (300)
T ss_dssp             TCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CCEEE---EECSS-----------------------------TTCC
T ss_pred             CCCceeEEECCCCC-EEEEecCCCeEEEECC-C-CcEEE---eeCCC-----------------------------CCCC
Confidence            34799999999998 8889887889999986 3 22211   11110                             0257


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD  190 (290)
                      |.+++++++|+ ||+++...+               .+..++. +    ......        .++ ....+.+|+++++
T Consensus       190 ~~~i~~d~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          190 PVGITSGNDGA-LWFVEIMGN---------------KIGRITT-T----GEISEY--------DIPTPNARPHAITAGKN  240 (300)
T ss_dssp             EEEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECST
T ss_pred             cceEEECCCCC-EEEEccCCC---------------EEEEEcC-C----CcEEEE--------ECCCCCCCceEEEECCC
Confidence            89999999995 777765221               1221221 0    000000        011 1245788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      |+ ||+++..++.|..||..  +  .. ..+.....                             ...|..++++++|+ 
T Consensus       241 g~-l~v~~~~~~~i~~~~~~--g--~~-~~~~~~~~-----------------------------~~~~~~i~~~~~g~-  284 (300)
T 2qc5_A          241 SE-IWFTEWGANQIGRITND--N--TI-QEYQLQTE-----------------------------NAEPHGITFGKDGS-  284 (300)
T ss_dssp             TC-EEEEETTTTEEEEECTT--S--CE-EEEECCST-----------------------------TCCCCCEEECTTSC-
T ss_pred             CC-EEEeccCCCeEEEECCC--C--cE-EEEECCcc-----------------------------CCccceeEeCCCCC-
Confidence            98 89999888999999762  1  11 12222110                             12689999999998 


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      ||+++.
T Consensus       285 l~v~~~  290 (300)
T 2qc5_A          285 VWFALK  290 (300)
T ss_dssp             EEEECS
T ss_pred             EEEEcc
Confidence            777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.80  E-value=1.3e-07  Score=96.89  Aligned_cols=117  Identities=10%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.+||+++.++.||+++...++|.+++++. ...+.+   ...+                              ...|
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l---~~~~------------------------------l~~P  516 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL---FREN------------------------------GSKP  516 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEE---EECT------------------------------TCCE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEE---EeCC------------------------------CCCc
Confidence            37899999999999999999999999999853 222222   1110                              1579


Q ss_pred             eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ++|+++|.+.+||+++... ..|.+...     +|...           ..+.  .         ..-..|.+|+|++++
T Consensus       517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~-----dG~~~-----------~~lv--~---------~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          517 RAIVVDPVHGFMYWTDWGTPAKIKKGGL-----NGVDI-----------YSLV--T---------ENIQWPNGITLDLLS  569 (791)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEET-----TSCCE-----------EEEE--C---------SSCSCEEEEEEETTT
T ss_pred             ceEEEecCCCCEEEecCCCCCeEEEEec-----CCCce-----------EEEE--e---------CCCCCceEEEEecCC
Confidence            9999999999999987421 11111100     11100           0000  0         011468899999999


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++||++++..+.|.++++.
T Consensus       570 ~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          570 GRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             TEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEeCCCCcEEEEecC
Confidence            9999999999999999984

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.80  E-value=7.8e-08  Score=91.38  Aligned_cols=123  Identities=16%  Similarity=0.129  Sum_probs=77.8

Q ss_pred             CCCceEEEEEcCCCCEEEE---EeCCCCeEEEEEcCCCC----Cc-eeeeEEeecccccCCCceEEecCCCCcCCCCcce
Q psy11412         31 VPAMVTDILISLDDRYLYT---SNWMHGDIRQYDIRDTA----HP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI  102 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyv---a~~~~g~V~v~dv~d~~----~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~  102 (290)
                      +++.+.+++|+|||++|++   ++..+++|++||+....    .. +.+..+..-                         
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------  145 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-------------------------  145 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-------------------------
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-------------------------
Confidence            4456899999999999997   56668999999986420    00 111111110                         


Q ss_pred             eeccccCCCceEEEEccC-CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCc
Q psy11412        103 IKGRRFTGSSQMFQLSLD-GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSM  181 (290)
Q Consensus       103 ~~~~~~g~gPr~vafsPd-G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~  181 (290)
                       .++  +..+..++|+|+ ++.|++++.               ++ .+.+||+..   ...+..         .......
T Consensus       146 -~~h--~~~V~~v~~~p~~~~~las~s~---------------Dg-~v~iwD~~~---~~~~~~---------~~~~~~~  194 (434)
T 2oit_A          146 -KDA--GGMVIDMKWNPTVPSMVAVCLA---------------DG-SIAVLQVTE---TVKVCA---------TLPSTVA  194 (434)
T ss_dssp             -CSG--GGSEEEEEECSSCTTEEEEEET---------------TS-CEEEEEESS---SEEEEE---------EECGGGC
T ss_pred             -CCC--CCceEEEEECCCCCCEEEEEEC---------------CC-eEEEEEcCC---Ccceee---------ccCCCCc
Confidence             000  146889999998 677776544               22 344455432   111110         0011235


Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +..+++||||++|++++ .+++|.+||+.
T Consensus       195 v~~v~wspdg~~lasgs-~dg~v~iwd~~  222 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGK-QNGTVVQYLPT  222 (434)
T ss_dssp             EEEEEECTTSSCEEEEE-TTSCEEEECTT
T ss_pred             eeEEEEcCCCCEEEEEc-CCCcEEEEccC
Confidence            67899999999999998 78999999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.79  E-value=6e-08  Score=95.44  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             ceeEEEEccCCCEEEEEeCCC-------CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412        181 MVTDILISLDDRYLYTSNWMH-------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~-------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                      ....+++||||++|+.+.+..       .+|.+||+...+.......+..+.                            
T Consensus       189 ~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----------------------------  240 (662)
T 3azo_A          189 FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----------------------------  240 (662)
T ss_dssp             EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----------------------------
T ss_pred             cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----------------------------
Confidence            455689999999998655332       479999996222111222222221                            


Q ss_pred             cccCCcceEEEccCCCEEEEEcC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                        ...+..++|||||+.+|+++.
T Consensus       241 --~~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          241 --EEAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             --TBCEEEEEECTTSCEEEEECT
T ss_pred             --CceEcceEECCCCeEEEEECC
Confidence              015788999999997777664

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.78  E-value=6.1e-08  Score=94.71  Aligned_cols=148  Identities=11%  Similarity=0.027  Sum_probs=89.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+|++ +|+++. .+|+|++||+.+...+...  + .++                              ....
T Consensus       267 ~~v~sv~~s~~~-~lasgs-~DgtV~lWD~~~~~~~~~~--~-~~H------------------------------~~~V  311 (524)
T 2j04_B          267 SLITTFDFLSPT-TVVCGF-KNGFVAEFDLTDPEVPSFY--D-QVH------------------------------DSYI  311 (524)
T ss_dssp             TCEEEEEESSSS-EEEEEE-TTSEEEEEETTBCSSCSEE--E-ECS------------------------------SSCE
T ss_pred             CCEEEEEecCCC-eEEEEe-CCCEEEEEECCCCCCceEE--e-ecc------------------------------cccE
Confidence            467899999875 677666 4899999999753222111  1 111                              1356


Q ss_pred             eEE--EEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        113 QMF--QLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       113 r~v--afsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..+  +|+|+| ++|+.++.                ++.+.+||+.+   .+.+....     + ... ......++|||
T Consensus       312 ~sv~~~~s~~g~~~laS~S~----------------D~tvklWD~~~---~~~~~~~~-----~-~~~-~~~v~~v~fsp  365 (524)
T 2j04_B          312 LSVSTAYSDFEDTVVSTVAV----------------DGYFYIFNPKD---IATTKTTV-----S-RFR-GSNLVPVVYCP  365 (524)
T ss_dssp             EEEEEECCTTSCCEEEEEET----------------TSEEEEECGGG---HHHHCEEE-----E-ECS-CCSCCCEEEET
T ss_pred             EEEEEEcCCCCCeEEEEecc----------------CCeEEEEECCC---CCcccccc-----c-ccc-cCcccceEeCC
Confidence            777  678998 77776554                23444455432   11111100     0 000 01245699999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      ||+.|.++. .+++|.+||+.....   +..+. |.                              .+....++|||||+
T Consensus       366 ~~~~l~s~~-~d~tv~lwd~~~~~~---~~~l~-gH------------------------------~~~V~sva~Sp~g~  410 (524)
T 2j04_B          366 QIYSYIYSD-GASSLRAVPSRAAFA---VHPLV-SR------------------------------ETTITAIGVSRLHP  410 (524)
T ss_dssp             TTTEEEEEC-SSSEEEEEETTCTTC---CEEEE-EC------------------------------SSCEEEEECCSSCC
T ss_pred             CcCeEEEeC-CCCcEEEEECccccc---ceeee-cC------------------------------CCceEEEEeCCCCC
Confidence            999977776 788999999864221   11111 22                              12578899999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +|++++.
T Consensus       411 ~l~Sgs~  417 (524)
T 2j04_B          411 MVLAGSA  417 (524)
T ss_dssp             BCEEEET
T ss_pred             eEEEEEC
Confidence            9988865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.78  E-value=2.2e-07  Score=84.98  Aligned_cols=117  Identities=8%  Similarity=-0.011  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++++++.++.||+++...+.|.+++.+. ...+.+.   ..                              ....|+
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~---~~------------------------------~~~~P~  125 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF---WQ------------------------------ELDQPR  125 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CS------------------------------SCSSEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEE---eC------------------------------CCCCcc
Confidence            6889999999999999999899999999753 2222221   01                              015799


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +++++|.+.+||+++...              ...+..++..- .....+.  .         ..-..|.+|+|+|+++.
T Consensus       126 giavdp~~g~ly~td~~~--------------~~~I~r~~~dG-~~~~~~~--~---------~~l~~Pnglavd~~~~~  179 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGE--------------VPKIERAGMDG-SSRFIII--N---------SEIYWPNGLTLDYEEQK  179 (318)
T ss_dssp             EEEEEGGGTEEEEEECSS--------------SCEEEEEETTS-CSCEEEE--C---------SSCSCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEecCC--------------CCEEEEEEcCC-CCeEEEE--E---------CCCCCccEEEEeccCCE
Confidence            999999999999986310              11111111100 0000000  0         01135789999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      ||+++...+.|..+|++
T Consensus       180 lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          180 LYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCEEEEEcCC
Confidence            99999999999999984

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.76  E-value=9.1e-07  Score=78.86  Aligned_cols=123  Identities=11%  Similarity=0.061  Sum_probs=73.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+.+++++||+.+||+.....+.|..+|..    .+++..+..++                              ...+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~----g~v~~~i~l~g------------------------------~~D~   72 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN----GDLIRTIPLDF------------------------------VKDL   72 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT----CCEEEEEECSS------------------------------CSSE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC----CCEEEEEecCC------------------------------CCCh
Confidence            4689999999999999865568888888874    34555555542                              1468


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .+|++.++|+ +|+++|..+.+..+....   ++ .+..++...         ++..     ..+......+|+++|++.
T Consensus        73 EGIa~~~~g~-~~vs~E~~~~l~~~~v~~---~~-~i~~~~~~~---------~~~~-----~~~~N~g~EGLA~d~~~~  133 (255)
T 3qqz_A           73 ETIEYIGDNQ-FVISDERDYAIYVISLTP---NS-EVKILKKIK---------IPLQ-----ESPTNCGFEGLAYSRQDH  133 (255)
T ss_dssp             EEEEECSTTE-EEEEETTTTEEEEEEECT---TC-CEEEEEEEE---------CCCS-----SCCCSSCCEEEEEETTTT
T ss_pred             HHeEEeCCCE-EEEEECCCCcEEEEEcCC---CC-eeeeeeeec---------cccc-----cccccCCcceEEEeCCCC
Confidence            8999998885 667777433222211110   11 111111111         0100     011223467899999999


Q ss_pred             EEEEEeCCCC-cEEEEE
Q psy11412        193 YLYTSNWMHG-DIRQYD  208 (290)
Q Consensus       193 ~Lyvs~r~~~-~V~v~D  208 (290)
                      +||+++..+. .|..|+
T Consensus       134 ~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          134 TFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             EEEEEEESSSEEEEEEE
T ss_pred             EEEEEECcCCceEEEEc
Confidence            9999885543 444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.76  E-value=4.6e-08  Score=90.92  Aligned_cols=141  Identities=15%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+.+..++|+|++++|+++.. +|+|++||+......+.+...... .      +..+.     ..+       ......
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~-~------i~~~~-----~~~-------~~~~~~  170 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSK-DGQIIVLKVNHYQQESEVKFLNCE-C------IRKIN-----LKN-------FGKNEY  170 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSEEEEEEEEEEEETTEEEEEEEE-E------EEEEE-----GGG-------GSSCCC
T ss_pred             CCCEEEEEEeCCCCEEEEEeC-CCEEEEEEeccccCCceeeccccc-e------eEEEE-----ccC-------cccccC
Confidence            446889999999999998875 899999999521111111111100 0      00000     000       000133


Q ss_pred             ceEEE--EccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        112 SQMFQ--LSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       112 Pr~va--fsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ...+.  +++++++|++++.               + +.+.+++...   .+.+..+.     +  .+.......++|+|
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~---------------d-~~i~iwd~~~---~~~~~~~~-----~--~~h~~~v~~~~~s~  224 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTN---------------L-SRVIIFDIRT---LERLQIIE-----N--SPRHGAVSSICIDE  224 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C--CGGGCCEEEEEECT
T ss_pred             ceEEEEEEcCCCCEEEEEeC---------------C-CeEEEEeCCC---CeeeEEEc-----c--CCCCCceEEEEECC
Confidence            44455  7789999988765               2 2343344322   11121111     0  00123577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF  222 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~  222 (290)
                      ||++|+++. .++.|.+||+..   .+.+..+.
T Consensus       225 ~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~  253 (437)
T 3gre_A          225 ECCVLILGT-TRGIIDIWDIRF---NVLIRSWS  253 (437)
T ss_dssp             TSCEEEEEE-TTSCEEEEETTT---TEEEEEEB
T ss_pred             CCCEEEEEc-CCCeEEEEEcCC---ccEEEEEe
Confidence            999999988 689999999963   44555443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.76  E-value=5.9e-07  Score=80.38  Aligned_cols=30  Identities=10%  Similarity=0.225  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .|.+++++|||+ ||+++..++.|.+||...
T Consensus        46 ~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A           46 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTT
T ss_pred             cccCcEECCCCC-EEEEECCCCEEEEEeCCC
Confidence            678999999998 677766678999998754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.75  E-value=4.7e-07  Score=80.98  Aligned_cols=59  Identities=8%  Similarity=-0.031  Sum_probs=43.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+.+++|||++||+++..++.|..|+. + +..+..   ...                               ...|.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~-g~~~~~---~~~-------------------------------~~~~~   89 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-D-GTVDVL---LDA-------------------------------TAFTN   89 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-T-SCEEEE---EES-------------------------------CSCEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-C-CCEEEE---eCC-------------------------------CCccc
Confidence            67889999999999999988899999986 3 222211   111                               14689


Q ss_pred             EEEEccCCCEEEEEcC
Q psy11412        114 MFQLSLDGKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPdG~~lYv~ne  129 (290)
                      +++++++|+ ||+++.
T Consensus        90 gl~~d~dG~-l~v~~~  104 (305)
T 3dr2_A           90 GNAVDAQQR-LVHCEH  104 (305)
T ss_dssp             EEEECTTSC-EEEEET
T ss_pred             eeeECCCCC-EEEEEC
Confidence            999999998 666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.74  E-value=1.1e-07  Score=85.13  Aligned_cols=120  Identities=21%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      +..++.|+ |+ +||+++...|  +|+++|+.+   .+++.++.++                                ..
T Consensus        44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---gkv~~~~~l~--------------------------------~~   86 (262)
T 3nol_A           44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---GKTLQQIELG--------------------------------KR   86 (262)
T ss_dssp             EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---CCEEEEEECC--------------------------------TT
T ss_pred             ccceEEEE-CC-EEEEECCCCCCceEEEEECCC---CcEEEEEecC--------------------------------Cc
Confidence            44789998 55 8999975444  899999864   4555555443                                23


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +.+..++++|++||+++..               .+.+.++|..+   .+.+.+++..          .  .+..+++||
T Consensus        87 ~FgeGit~~g~~ly~ltw~---------------~~~v~v~D~~t---~~~~~ti~~~----------~--eG~glt~dg  136 (262)
T 3nol_A           87 YFGEGISDWKDKIVGLTWK---------------NGLGFVWNIRN---LRQVRSFNYD----------G--EGWGLTHND  136 (262)
T ss_dssp             CCEEEEEEETTEEEEEESS---------------SSEEEEEETTT---CCEEEEEECS----------S--CCCCEEECS
T ss_pred             cceeEEEEeCCEEEEEEee---------------CCEEEEEECcc---CcEEEEEECC----------C--CceEEecCC
Confidence            4444455678899998752               22333333332   2333333321          1  224577899


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                      +.||+|+ ++++|+++|.   .+.+.+++|.++
T Consensus       137 ~~L~~Sd-Gs~~i~~iDp---~T~~v~~~I~V~  165 (262)
T 3nol_A          137 QYLIMSD-GTPVLRFLDP---ESLTPVRTITVT  165 (262)
T ss_dssp             SCEEECC-SSSEEEEECT---TTCSEEEEEECE
T ss_pred             CEEEEEC-CCCeEEEEcC---CCCeEEEEEEec
Confidence            9999999 6889998864   457788888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.74  E-value=2e-07  Score=84.17  Aligned_cols=132  Identities=11%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|+++++++++..||+++.. +.|.++|... +..+.+.....+                             ..-..|
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~-g~~~~~~~~~~~-----------------------------~~~~~p  128 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEG-GHATQLATSVDG-----------------------------VPFKWL  128 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTC-EECEEEESEETT-----------------------------EECSCE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCC-CEEEEecccCCC-----------------------------Cccccc
Confidence            469999999855679999875 4577777532 112222110000                             001468


Q ss_pred             eEEEEcc-CCCEEEEEcCCCCCcceee----cccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        113 QMFQLSL-DGKRIYVSSSLFSPWDKEI----YPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       113 r~vafsP-dG~~lYv~nel~~~~d~~~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      ..++++| +|+ +|+++.... .....    ... ....+.+..++...    ..+....         .....|.+|++
T Consensus       129 ~~i~~d~~~G~-l~v~d~~~~-~~~~~~~~~~~~-~~~~g~v~~~d~~~----~~~~~~~---------~~~~~p~gia~  192 (322)
T 2fp8_A          129 YAVTVDQRTGI-VYFTDVSTL-YDDRGVQQIMDT-SDKTGRLIKYDPST----KETTLLL---------KELHVPGGAEV  192 (322)
T ss_dssp             EEEEECTTTCC-EEEEESCSS-CCTTCHHHHHHH-TCCCEEEEEEETTT----TEEEEEE---------EEESCCCEEEE
T ss_pred             ceEEEecCCCE-EEEECCccc-ccccccceehcc-cCCCceEEEEeCCC----CEEEEec---------cCCccCcceEE
Confidence            9999999 885 888764210 00000    000 00011222222100    0000000         00134677999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|||++||+++...+.|.+|++..
T Consensus       193 ~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          193 SADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCC
Confidence            999999999998889999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.74  E-value=6.1e-07  Score=82.13  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCc-EEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  258 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~-V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
                      .....++|||||++|+++. .+++ |.+||+..   .+.+..+..|..                             .+.
T Consensus       196 ~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~---~~~~~~~~~g~h-----------------------------~~~  242 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCS-QDGTIIRVFKTED---GVLVREFRRGLD-----------------------------RAD  242 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTCSEEEEEETTT---CCEEEEEECTTC-----------------------------CSC
T ss_pred             CceEEEEECCCCCEEEEEe-CCCCEEEEEECCC---CcEEEEEEcCCC-----------------------------CCc
Confidence            4678899999999999888 6888 99999864   344555443310                             125


Q ss_pred             cceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        259 SQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      ...++|+|||++|+++..  ...-|+
T Consensus       243 v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEEE
Confidence            788999999999999865  444554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.7e-07  Score=94.86  Aligned_cols=119  Identities=10%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      +.+..++|+|||++|++++. +|+|.+||+... ....+..+. ++                              ....
T Consensus        10 ~~V~~l~~s~dg~~latg~~-dg~I~vwd~~~~-~~~~~~~l~-~h------------------------------~~~V   56 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGE-THKLIDTLT-GH------------------------------EGPV   56 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEET-TTEEEEEEEETT-EEEEEEEEC-CC------------------------------SSCE
T ss_pred             ceeEEEEECCCCCeEEEEEC-CCcEEEEecCCC-CCccceecc-CC------------------------------cCce
Confidence            36789999999999998875 899999998642 223332221 10                              1467


Q ss_pred             eEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        113 QMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       113 r~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ..++|+|+  |++|++++.               ++ .+.++++.... ...+..     ..    ........++++|+
T Consensus        57 ~~l~~s~~~~~~~l~s~s~---------------Dg-~I~vwd~~~~~-~~~~~~-----~~----~h~~~V~~v~~sp~  110 (753)
T 3jro_A           57 WRVDWAHPKFGTILASCSY---------------DG-KVLIWKEENGR-WSQIAV-----HA----VHSASVNSVQWAPH  110 (753)
T ss_dssp             EEEEECCTTSCSEEEEEET---------------TS-CEEEEEEETTE-EEEEEE-----EC----CCSSCEEEEEECCG
T ss_pred             EEEEecCCCCCCEEEEEeC---------------CC-eEEEEECCCCc-cccccc-----cc----CCCCCeEEEEECCC
Confidence            88999998  999998765               22 34445543210 001111     00    01245788999999


Q ss_pred             --CCEEEEEeCCCCcEEEEEecC
Q psy11412        191 --DRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       191 --Gr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                        |+.|+++. .++.|.+||+..
T Consensus       111 ~~~~~l~sgs-~dg~I~vwdl~~  132 (753)
T 3jro_A          111 EYGPLLLVAS-SDGKVSVVEFKE  132 (753)
T ss_dssp             GGCSEEEEEE-TTSEEEEEECCS
T ss_pred             CCCCEEEEEe-CCCcEEEEEeec
Confidence              99999888 689999999964

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.74  E-value=2.2e-08  Score=99.63  Aligned_cols=122  Identities=14%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ..+++++|||++++.+  .+++|.+||+... ....+-   .++..                           .......
T Consensus        18 ~~~~~~s~dg~~~~~~--~d~~i~~~~~~~g-~~~~~~---~~~~~---------------------------~~~~~~~   64 (719)
T 1z68_A           18 TFFPNWISGQEYLHQS--ADNNIVLYNIETG-QSYTIL---SNRTM---------------------------KSVNASN   64 (719)
T ss_dssp             CCCCEESSSSEEEEEC--TTSCEEEEESSSC-CEEEEE---CHHHH---------------------------HTTTCSE
T ss_pred             CCccEECCCCeEEEEc--CCCCEEEEEcCCC-cEEEEE---ccccc---------------------------cccceee
Confidence            4478999999776644  4789999998653 222221   11000                           0013678


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++|||||++|+.++.....|..       ...+.+.++++..   .+.+..   .     .+  ......++|||||++|
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~-------s~~~~i~~~d~~~---g~~~~~---~-----~l--~~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRY-------SYTATYYIYDLSN---GEFVRG---N-----EL--PRPIQYLCWSPVGSKL  124 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSS-------CEEEEEEEEETTT---TEECCS---S-----CC--CSSBCCEEECSSTTCE
T ss_pred             EEECCCCCeEEEEecCceeEEe-------ecceEEEEEECCC---Cccccc---e-----ec--CcccccceECCCCCEE
Confidence            9999999999876541111100       0011222233211   111000   0     01  1234568999999998


Q ss_pred             EEEeCCCCcEEEEEecC
Q psy11412        195 YTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d  211 (290)
                      +.+.  +++|.+||+..
T Consensus       125 a~~~--~~~i~~~~~~~  139 (719)
T 1z68_A          125 AYVY--QNNIYLKQRPG  139 (719)
T ss_dssp             EEEE--TTEEEEESSTT
T ss_pred             EEEE--CCeEEEEeCCC
Confidence            8765  57899999853

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.73  E-value=2.6e-07  Score=80.66  Aligned_cols=112  Identities=12%  Similarity=0.100  Sum_probs=70.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|++++++++|+ ||+++...+.|..|+..  +....   +....                             ....|
T Consensus       104 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~---~~~~~-----------------------------~~~~~  148 (300)
T 2qc5_A          104 SGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIYE---YDLPN-----------------------------KGSYP  148 (300)
T ss_dssp             CCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEEE---EECSS-----------------------------TTCCE
T ss_pred             CCCccceECCCCC-EEEEccCCCeEEEECCC--CCEEE---ccCCC-----------------------------CCCCc
Confidence            5799999999987 67787777889888763  22211   11110                             12579


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDG  191 (290)
                      .+++++++|+ ||+++...+               .+..++. +    ......        ..+. ...+.+|++++||
T Consensus       149 ~~i~~d~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~d~~g  199 (300)
T 2qc5_A          149 AFITLGSDNA-LWFTENQNN---------------SIGRITN-T----GKLEEY--------PLPTNAAAPVGITSGNDG  199 (300)
T ss_dssp             EEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECTTS
T ss_pred             eeEEECCCCC-EEEEecCCC---------------eEEEECC-C----CcEEEe--------eCCCCCCCcceEEECCCC
Confidence            9999999999 888765222               1211211 0    000000        0111 2457889999999


Q ss_pred             CEEEEEeCCCCcEEEEEe
Q psy11412        192 RYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv  209 (290)
                      + ||+++...+.|.+||.
T Consensus       200 ~-l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          200 A-LWFVEIMGNKIGRITT  216 (300)
T ss_dssp             S-EEEEETTTTEEEEECT
T ss_pred             C-EEEEccCCCEEEEEcC
Confidence            5 7888877788999876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.73  E-value=2.7e-07  Score=80.53  Aligned_cols=144  Identities=11%  Similarity=0.108  Sum_probs=86.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.+++++++|+ ||+++..++.|.+||. + +.....   ...                             ..+..
T Consensus        98 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~~~---~~~-----------------------------~~~~~  142 (299)
T 2z2n_A           98 DSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIREY---ELP-----------------------------NKGSY  142 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEEEE---ECS-----------------------------STTCC
T ss_pred             CCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEEEe---cCC-----------------------------CCCCC
Confidence            34799999999986 6677766789999986 3 222111   110                             01257


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD  190 (290)
                      |.+++++++|+ +|+++...+               .+..++. +    ..+...        ..+ ....+.+|++++|
T Consensus       143 ~~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          143 PSFITLGSDNA-LWFTENQNN---------------AIGRITE-S----GDITEF--------KIPTPASGPVGITKGND  193 (299)
T ss_dssp             EEEEEECTTSC-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECTT
T ss_pred             CceEEEcCCCC-EEEEeCCCC---------------EEEEEcC-C----CcEEEe--------eCCCCCCcceeEEECCC
Confidence            89999999995 676654211               2222221 1    001000        001 1235788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      |+ ||+++...+.|.+||. + +.  . ..+.....                             ...|+.++++++|+ 
T Consensus       194 g~-l~v~~~~~~~i~~~~~-~-g~--~-~~~~~~~~-----------------------------~~~~~~i~~~~~g~-  237 (299)
T 2z2n_A          194 DA-LWFVEIIGNKIGRITT-S-GE--I-TEFKIPTP-----------------------------NARPHAITAGAGID-  237 (299)
T ss_dssp             SS-EEEEETTTTEEEEECT-T-CC--E-EEEECSST-----------------------------TCCEEEEEECSTTC-
T ss_pred             CC-EEEEccCCceEEEECC-C-Cc--E-EEEECCCC-----------------------------CCCceeEEECCCCC-
Confidence            98 7888877889999976 2 12  1 11211110                             12689999999998 


Q ss_pred             EEEEc
Q psy11412        271 IYVSS  275 (290)
Q Consensus       271 L~Van  275 (290)
                      ||+++
T Consensus       238 l~v~~  242 (299)
T 2z2n_A          238 LWFTE  242 (299)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77774

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.73  E-value=1e-07  Score=99.58  Aligned_cols=143  Identities=16%  Similarity=0.113  Sum_probs=86.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEE-EEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIR-QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~-v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+.+++|+ ||++|+.+.. .+.|. +|++.. +....+   . ++                              ...+
T Consensus       339 ~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~-~~~~~l---~-~~------------------------------~~~~  381 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRT-GKAEKF---E-EN------------------------------LGNV  381 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEET-TEEEEEEEETTT-CCEEEC---C-CC------------------------------CCSE
T ss_pred             eEEeeeEc-CCCeEEEEEC-CCceEEEEECCC-CCceEe---c-CC------------------------------ccce
Confidence            57789999 9999988876 66788 888754 222111   1 10                              1457


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|||||++|++++.               ++ .+.++++..   .+......     +    .......++|||||+
T Consensus       382 ~~~~~SpDG~~la~~~~---------------~~-~v~~~d~~t---g~~~~~~~-----~----~~~~v~~~~~SpDG~  433 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVAND---------------RF-EIMTVDLET---GKPTVIER-----S----REAMITDFTISDNSR  433 (1045)
T ss_dssp             EEEEECTTSSEEEEEET---------------TS-EEEEEETTT---CCEEEEEE-----C----SSSCCCCEEECTTSC
T ss_pred             eeeEECCCCCEEEEECC---------------CC-eEEEEECCC---CceEEecc-----C----CCCCccceEECCCCC
Confidence            88999999999998765               11 222233211   11111000     0    112345699999999


Q ss_pred             EEEEEeCC---------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        193 YLYTSNWM---------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       193 ~Lyvs~r~---------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      +|+.+...         ++.|.+||+..   .+ +..+. +.                              ...+..++
T Consensus       434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~---g~-~~~l~-~~------------------------------~~~~~~~~  478 (1045)
T 1k32_A          434 FIAYGFPLKHGETDGYVMQAIHVYDMEG---RK-IFAAT-TE------------------------------NSHDYAPA  478 (1045)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTT---TE-EEECS-CS------------------------------SSBEEEEE
T ss_pred             eEEEEecCccccccCCCCCeEEEEECCC---Cc-EEEee-CC------------------------------CcccCCce
Confidence            98765432         25899999853   22 22111 11                              01467799


Q ss_pred             EccCCCEEEEEcC
Q psy11412        264 LSLDGKRIYVSSS  276 (290)
Q Consensus       264 ~sPDG~~L~Van~  276 (290)
                      |||||++||.++.
T Consensus       479 ~spdG~~l~~~s~  491 (1045)
T 1k32_A          479 FDADSKNLYYLSY  491 (1045)
T ss_dssp             ECTTSCEEEEEES
T ss_pred             EcCCCCEEEEEec
Confidence            9999999988765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.1e-06  Score=76.67  Aligned_cols=111  Identities=11%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..+++ ||+++|++++. +|.|++||+.+   ......+..+                               .....
T Consensus        20 ~v~~~~~-~~~~~l~s~~~-dg~v~vw~~~~---~~~~~~~~~~-------------------------------~~~v~   63 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSR-DGTVRLWSKDD---QWLGTVVYTG-------------------------------QGFLN   63 (313)
T ss_dssp             CEEEEEE-EETTEEEEEET-TSEEEEEEESS---SEEEEEEEEC-------------------------------SSCEE
T ss_pred             CcEEEEe-cCCCEEEEEEc-CCcEEEEECCC---CEEEEEeecC-------------------------------CccEE
Confidence            5788999 99999988875 89999999954   2332222221                               14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|++++|++++.               ++ .+..+++.+....+.+...     .+    .......+.+  ++++
T Consensus        64 ~~~~~~~~~~l~~~~~---------------dg-~i~~~~~~~~~~~~~~~~~-----~~----~~~~i~~~~~--~~~~  116 (313)
T 3odt_A           64 SVCYDSEKELLLFGGK---------------DT-MINGVPLFATSGEDPLYTL-----IG----HQGNVCSLSF--QDGV  116 (313)
T ss_dssp             EEEEETTTTEEEEEET---------------TS-CEEEEETTCCTTSCC-CEE-----CC----CSSCEEEEEE--ETTE
T ss_pred             EEEECCCCCEEEEecC---------------CC-eEEEEEeeecCCCCcccch-----hh----cccCEEEEEe--cCCE
Confidence            8999999999998765               12 2222333221101111110     00    1134556666  7889


Q ss_pred             EEEEeCCCCcEEEEE
Q psy11412        194 LYTSNWMHGDIRQYD  208 (290)
Q Consensus       194 Lyvs~r~~~~V~v~D  208 (290)
                      |+++. .++.|.+||
T Consensus       117 l~~~~-~d~~i~~~d  130 (313)
T 3odt_A          117 VISGS-WDKTAKVWK  130 (313)
T ss_dssp             EEEEE-TTSEEEEEE
T ss_pred             EEEEe-CCCCEEEEc
Confidence            88888 689999998

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.71  E-value=5.3e-07  Score=85.99  Aligned_cols=139  Identities=9%  Similarity=0.011  Sum_probs=77.8

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV   88 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v   88 (290)
                      +-.+|+...+++....   .....|++++++++|+ ||+++....  .-.++.+...........+              
T Consensus       163 ~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--------------  224 (433)
T 4hw6_A          163 AFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL--------------  224 (433)
T ss_dssp             CEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--------------
T ss_pred             CEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--------------
Confidence            3445666666655443   2344799999999999 999987431  1112222111100000000              


Q ss_pred             ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412         89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL  168 (290)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~  168 (290)
                                        .....|++++++|+...||+++...+.               +..++..+   ......+..
T Consensus       225 ------------------~~~~~P~giavd~~~G~lyv~d~~~~~---------------V~~~d~~~---g~~~~~~~~  268 (433)
T 4hw6_A          225 ------------------CNARGAKTCAVHPQNGKIYYTRYHHAM---------------ISSYDPAT---GTLTEEEVM  268 (433)
T ss_dssp             ------------------EECSSBCCCEECTTTCCEEECBTTCSE---------------EEEECTTT---CCEEEEEEE
T ss_pred             ------------------cccCCCCEEEEeCCCCeEEEEECCCCE---------------EEEEECCC---CeEEEEEec
Confidence                              012579999999976679987652221               11111100   000000000


Q ss_pred             cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                             ......+..|+|+|||++||+++..++.|..++..
T Consensus       269 -------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          269 -------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             -------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             -------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence                   00112345799999999999999999999999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.71  E-value=1.2e-06  Score=81.64  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             CceEEEEEcC--CCC-EEEEEeCC--CCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         33 AMVTDILISL--DDR-YLYTSNWM--HGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        33 ~~p~~va~Sp--DGr-~Lyva~~~--~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      -.|+++.+.+  ||+ +|||+|..  ..+|.+|+++..+.. ..+.++. +                             
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-g-----------------------------  161 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-H-----------------------------  161 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-C-----------------------------
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-c-----------------------------
Confidence            3899999977  465 89999876  678999998653221 2222211 1                             


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeeccc--ccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD--LVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~--~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                      ..-..|..+++.++|+ +|++|-..-+-..+...+  .....+.+..++.      ..+..     +    ...-..|.+
T Consensus       162 ~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------~~~~~-----~----~~~l~~pNG  225 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------NDVRV-----V----AEGFDFANG  225 (355)
T ss_dssp             TTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT------TCCEE-----E----EEEESSEEE
T ss_pred             CCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC------CeEEE-----e----ecCCcccCc
Confidence            0125799999999996 777764210000000000  0001112221111      00100     0    000135788


Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |+|||||++||+++...+.|.+||+..
T Consensus       226 ia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          226 INISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            999999999999998889999999964

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.71  E-value=5.3e-08  Score=94.69  Aligned_cols=113  Identities=8%  Similarity=-0.043  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ....++||||+.++.+....+.+.+||+... ..+.+.   .+                                .. ..
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~l~---~~--------------------------------~~-~~  154 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRELA---RL--------------------------------PG-FG  154 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEEEE---EE--------------------------------SS-CE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEEee---cC--------------------------------CC-ce
Confidence            4467899999765444334566679998642 222221   11                                12 67


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++|||||++|+.++....            ....+..+++..   .+ ...+     .    ........++|||||++|
T Consensus       155 ~~~spDG~~la~~~~~~~------------~~~~i~~~d~~~---g~-~~~l-----~----~~~~~~~~~~~SpDG~~l  209 (582)
T 3o4h_A          155 FVSDIRGDLIAGLGFFGG------------GRVSLFTSNLSS---GG-LRVF-----D----SGEGSFSSASISPGMKVT  209 (582)
T ss_dssp             EEEEEETTEEEEEEEEET------------TEEEEEEEETTT---CC-CEEE-----C----CSSCEEEEEEECTTSCEE
T ss_pred             EEECCCCCEEEEEEEcCC------------CCeEEEEEcCCC---CC-ceEe-----e----cCCCccccceECCCCCEE
Confidence            899999999997654100            001122222111   11 1110     0    012345789999999999


Q ss_pred             EEEeCCCC--cEEEEEec
Q psy11412        195 YTSNWMHG--DIRQYDIR  210 (290)
Q Consensus       195 yvs~r~~~--~V~v~Dv~  210 (290)
                      |.++ .++  .|.+||+.
T Consensus       210 ~~~~-~~~~~~i~~~d~~  226 (582)
T 3o4h_A          210 AGLE-TAREARLVTVDPR  226 (582)
T ss_dssp             EEEE-CSSCEEEEEECTT
T ss_pred             EEcc-CCCeeEEEEEcCC
Confidence            9766 455  79999884

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.71  E-value=9.7e-08  Score=85.62  Aligned_cols=120  Identities=16%  Similarity=0.074  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      +..++.|+  |++||+++...|.|+++|+.+   .+++.++ ++                                ..+.
T Consensus        56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~T---gkv~~~~-l~--------------------------------~~~F   97 (268)
T 3nok_A           56 FTQGLVFH--QGHFFESTGHQGTLRQLSLES---AQPVWME-RL--------------------------------GNIF   97 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEECCSSC---SSCSEEE-EC--------------------------------TTCC
T ss_pred             ccceEEEE--CCEEEEEcCCCCEEEEEECCC---CcEEeEE-CC--------------------------------CCcc
Confidence            45688886  689999998889999999865   4444444 43                                1233


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +..++++|++||+++..               .+.+.++|..+   .+.+.+++.. .           .+..+++||++
T Consensus        98 geGit~~g~~Ly~ltw~---------------~~~v~V~D~~T---l~~~~ti~~~-~-----------eGwGLt~Dg~~  147 (268)
T 3nok_A           98 AEGLASDGERLYQLTWT---------------EGLLFTWSGMP---PQRERTTRYS-G-----------EGWGLCYWNGK  147 (268)
T ss_dssp             EEEEEECSSCEEEEESS---------------SCEEEEEETTT---TEEEEEEECS-S-----------CCCCEEEETTE
T ss_pred             eeEEEEeCCEEEEEEcc---------------CCEEEEEECCc---CcEEEEEeCC-C-----------ceeEEecCCCE
Confidence            33345678899998752               22333333332   2333333321 1           12446689999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      ||+|+ ++++|+++|.   .+.+.+++|.++.
T Consensus       148 L~vSd-Gs~~l~~iDp---~T~~v~~~I~V~~  175 (268)
T 3nok_A          148 LVRSD-GGTMLTFHEP---DGFALVGAVQVKL  175 (268)
T ss_dssp             EEEEC-SSSEEEEECT---TTCCEEEEEECEE
T ss_pred             EEEEC-CCCEEEEEcC---CCCeEEEEEEeCC
Confidence            99999 7999999864   4577888888754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.70  E-value=6.1e-07  Score=78.40  Aligned_cols=149  Identities=15%  Similarity=0.109  Sum_probs=89.6

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ..+..++++| ++.+|+++.. +|.|.+||..     +....+...                              ....
T Consensus       143 ~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~-----~~~~~~~~~------------------------------~~~~  186 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFLTASA-DKTIKLWQND-----KVIKTFSGI------------------------------HNDV  186 (313)
T ss_dssp             SCEEEEEEEETTTTEEEEEET-TSCEEEEETT-----EEEEEECSS------------------------------CSSC
T ss_pred             CceeEEEEccCCCCEEEEEEC-CCCEEEEecC-----ceEEEEecc------------------------------Cccc
Confidence            3567888888 9999988875 7899999932     222211110                              0146


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|+|+++ +++.+.                ++.+..++...   .+.+..+.         ........++|+|||
T Consensus       187 i~~~~~~~~~~-~~~~~~----------------dg~i~i~d~~~---~~~~~~~~---------~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSN----------------DGLIKLVDMHT---GDVLRTYE---------GHESFVYCIKLLPNG  237 (313)
T ss_dssp             EEEEEEEETTE-EEEEET----------------TSEEEEEETTT---CCEEEEEE---------CCSSCEEEEEECTTS
T ss_pred             EEEEEEcCCCe-EEEccC----------------CCeEEEEECCc---hhhhhhhh---------cCCceEEEEEEecCC
Confidence            78899999999 555543                12333333321   11111110         012457789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      + |+++. .++.|.+||+.+   .+.+..+....                               +....++|+|||+++
T Consensus       238 ~-l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~~  281 (313)
T 3odt_A          238 D-IVSCG-EDRTVRIWSKEN---GSLKQVITLPA-------------------------------ISIWSVDCMSNGDII  281 (313)
T ss_dssp             C-EEEEE-TTSEEEEECTTT---CCEEEEEECSS-------------------------------SCEEEEEECTTSCEE
T ss_pred             C-EEEEe-cCCEEEEEECCC---CceeEEEeccC-------------------------------ceEEEEEEccCCCEE
Confidence            5 55665 689999999854   33444332211                               146889999999955


Q ss_pred             EEEcC-CCCCCC
Q psy11412        272 YVSSS-LFSPWD  282 (290)
Q Consensus       272 ~Van~-~~~~~~  282 (290)
                      ..+.. .+.-|+
T Consensus       282 ~~~~dg~i~iw~  293 (313)
T 3odt_A          282 VGSSDNLVRIFS  293 (313)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEeCCCcEEEEe
Confidence            54433 444454

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.69  E-value=7.6e-08  Score=93.58  Aligned_cols=30  Identities=13%  Similarity=0.157  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      .+++++|||||++|+.+...+|++.+|+++
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~   52 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD   52 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEc
Confidence            377899999999998876558899999984

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.67  E-value=4.1e-07  Score=84.41  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=43.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.+++++|||+ |||+... |.|.+++ .+ +. +.+..+.+-                            .....+|.
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~-g~I~~~d-~~-G~-~~~~~~~v~----------------------------~~g~~g~~   76 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERP-GRLVLIS-PS-GK-KLVASFDVA----------------------------NVGEAGLL   76 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETT-TEEEEEC-SS-CE-EEEEECCCC----------------------------CSTTCSEE
T ss_pred             CCeEEEEcCCCe-EEEEeCC-CEEEEEe-CC-Cc-eEeecccee----------------------------ecCCCcee
Confidence            699999999997 8888874 8998886 22 22 332221100                            00025799


Q ss_pred             EEEEccC---CCEEEEEcC
Q psy11412        114 MFQLSLD---GKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPd---G~~lYv~ne  129 (290)
                      +|+|+||   +++|||+..
T Consensus        77 gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEE
T ss_pred             eEEeCCCCCcCCEEEEEEe
Confidence            9999999   889999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=1.1e-06  Score=85.37  Aligned_cols=154  Identities=10%  Similarity=0.031  Sum_probs=87.1

Q ss_pred             eEEEEEecCCCccCCCCCCC-CCCCceEEEEE-------cCCCCEEEEEeCCCCe------EEEEEcCCCCCcee-e--e
Q psy11412         10 KADKVIDIPAKQVQGYPGGD-KVPAMVTDILI-------SLDDRYLYTSNWMHGD------IRQYDIRDTAHPVL-V--G   72 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~v~~~p~~va~-------SpDGr~Lyva~~~~g~------V~v~dv~d~~~~~~-~--~   72 (290)
                      ..-++||...+++..-.... ..-..|++|+|       +++|++||++++.++.      |.+++....+.... .  .
T Consensus       162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~  241 (496)
T 3kya_A          162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ  241 (496)
T ss_dssp             EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred             CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence            34567888877765432110 11236999999       9999999999987633      55554322111100 0  0


Q ss_pred             EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecc
Q psy11412         73 QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD  152 (290)
Q Consensus        73 ~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~  152 (290)
                      .+.                                .+.+|.+++++|++++||+++...+               .+.++
T Consensus       242 ~v~--------------------------------~~~~p~giavdp~~g~LYvtd~~~g---------------~V~r~  274 (496)
T 3kya_A          242 LIA--------------------------------AYKQCNGATIHPINGELYFNSYEKG---------------QVFRL  274 (496)
T ss_dssp             EEE--------------------------------EESCCCCEEECTTTCCEEEEETTTT---------------EEEEE
T ss_pred             eec--------------------------------cCCCceEEEEcCCCCeEEEEECCCC---------------EEEEE
Confidence            110                                1257899999999999999876322               22222


Q ss_pred             eeee----eeeccc---ccccCcccc-CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        153 EIME----FIQRNE---MRSMPLSSL-GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       153 ~~~~----~~~~~~---i~~~p~~~~-~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +...    ......   ......+.. .....+....+++|+|+|||++||+++..++.|..+|..
T Consensus       275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            2210    000000   000000000 000112234678999999999999999999999998874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.65  E-value=2.8e-07  Score=87.48  Aligned_cols=173  Identities=16%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ....+++++++.+|++++. + .|.+|+..+....   .  ..+..   ...+  ..     ..+.    ........+.
T Consensus        38 ~~n~lavs~~~~~l~~~~~-d-gv~v~~~~~~~~~---~--~~~~~---~~~~--~~-----~~~~----~~~~~~~~v~   96 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGA-S-GLQIFPTKNLLIQ---N--KPGDD---PNKI--VD-----KVQG----LLVPMKFPIH   96 (434)
T ss_dssp             CCBCEEEETTTTEEEEEET-T-EEEEEEHHHHCCC---C--CTTCC---TTCE--EE-----CCCC----EEECCSSCEE
T ss_pred             CccEEEEecCCCEEEEECC-C-EEEEEEchHhhhh---c--ccccC---cccc--cc-----cCcc----ccccCCCccc
Confidence            4567999999999998875 3 4999886431000   0  00000   0000  00     0000    0001124688


Q ss_pred             EEEEccCCCEEEE---EcCCCCCcceeecccccCCCceeecceeeeee-----ecccccccCccccCccccCCCCceeEE
Q psy11412        114 MFQLSLDGKRIYV---SSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-----QRNEMRSMPLSSLGSWKYPARSMVTDI  185 (290)
Q Consensus       114 ~vafsPdG~~lYv---~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~p~~~~~~~~~~~~~~~~~i  185 (290)
                      .++|+|||++|++   ++..               ++.+.+|++....     ..+.+..+..  ..+    ....+..+
T Consensus        97 ~l~~spdg~~lav~~~sgs~---------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~----h~~~V~~v  155 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEY---------------GSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKD----AGGMVIDM  155 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTT---------------EEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCS----GGGSEEEE
T ss_pred             EEEEcCCCCEEEEEEeccCC---------------CceEEEEEccccccCCcCCcceeeeeec--cCC----CCCceEEE
Confidence            9999999999997   3331               2233334432210     0000000000  000    12457889


Q ss_pred             EEccC-CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        186 LISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       186 ~~SpD-Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      +|+|+ ++.|+++. .+++|.+||+...   ..+... .+.                              ...+..++|
T Consensus       156 ~~~p~~~~~las~s-~Dg~v~iwD~~~~---~~~~~~-~~~------------------------------~~~v~~v~w  200 (434)
T 2oit_A          156 KWNPTVPSMVAVCL-ADGSIAVLQVTET---VKVCAT-LPS------------------------------TVAVTSVCW  200 (434)
T ss_dssp             EECSSCTTEEEEEE-TTSCEEEEEESSS---EEEEEE-ECG------------------------------GGCEEEEEE
T ss_pred             EECCCCCCEEEEEE-CCCeEEEEEcCCC---cceeec-cCC------------------------------CCceeEEEE
Confidence            99998 77777666 6899999999642   221111 111                              125789999


Q ss_pred             ccCCCEEEEEcC--CCCCCCc
Q psy11412        265 SLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       265 sPDG~~L~Van~--~~~~~~~  283 (290)
                      +|||++|++++.  ...-||.
T Consensus       201 spdg~~lasgs~dg~v~iwd~  221 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLP  221 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECT
T ss_pred             cCCCCEEEEEcCCCcEEEEcc
Confidence            999999999976  4555654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.65  E-value=1.3e-06  Score=76.00  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|.+++++++|+ ||+++...+.|.+||. + +....   +....                             ....
T Consensus       140 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~-g~~~~---~~~~~-----------------------------~~~~  184 (299)
T 2z2n_A          140 GSYPSFITLGSDNA-LWFTENQNNAIGRITE-S-GDITE---FKIPT-----------------------------PASG  184 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEEE---EECSS-----------------------------TTCC
T ss_pred             CCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-C-CcEEE---eeCCC-----------------------------CCCc
Confidence            34799999999995 6778777789999987 3 22221   11110                             0257


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD  190 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD  190 (290)
                      |.+++++++|+ ||+++...+               .+..++. +    ..+...        ..+ ....+.+|++++|
T Consensus       185 ~~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          185 PVGITKGNDDA-LWFVEIIGN---------------KIGRITT-S----GEITEF--------KIPTPNARPHAITAGAG  235 (299)
T ss_dssp             EEEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECST
T ss_pred             ceeEEECCCCC-EEEEccCCc---------------eEEEECC-C----CcEEEE--------ECCCCCCCceeEEECCC
Confidence            89999999998 787764222               2222221 1    000000        011 1246788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEe
Q psy11412        191 DRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv  209 (290)
                      |+ ||+++..++.|.+||.
T Consensus       236 g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          236 ID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TC-EEEEETTTTEEEEEET
T ss_pred             CC-EEEeccCCceEEEECC
Confidence            98 8999878889999987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.63  E-value=4.2e-08  Score=99.16  Aligned_cols=117  Identities=9%  Similarity=0.048  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.+|++++.++.||+++...+.|.+++... ...+.+  +..+                               ...|+
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l--~~~~-------------------------------~~~P~  499 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL--FREQ-------------------------------GSKPR  499 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSS-CCEEEE--CCCS-------------------------------SCCCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCC-CceEEE--EeCC-------------------------------CCCcc
Confidence            6889999999999999999889999998743 211111  0000                               15799


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +|+++|++++||+++...              ...+.+++... .....+..           ..-..|.+|+|+|++++
T Consensus       500 giavDp~~g~ly~td~~~--------------~~~I~~~~~dG-~~~~~l~~-----------~~l~~PnGlavd~~~~~  553 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGT--------------PAKIKKGGLNG-VDIYSLVT-----------ENIQWPNGITLDLLSGR  553 (699)
T ss_dssp             CEECCSSSSCCEECCCSS--------------SCCEEBCCSSS-CCCCEESC-----------SSCSSCCCEEECTTTCC
T ss_pred             eEEEccCCCcEEEcccCC--------------CCeEEEEeCCC-CCeeEEEe-----------CCCCCccEEEEeccCCE
Confidence            999999999999976421              01111111100 00000000           01135678999999999


Q ss_pred             EEEEeCCCCcEEEEEec
Q psy11412        194 LYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~  210 (290)
                      ||+++...+.|.++|+.
T Consensus       554 LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          554 LYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             EEEEETTTTEEEEECSS
T ss_pred             EEEEecCCCeEEEEccC
Confidence            99999988999999884

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.63  E-value=1e-06  Score=77.32  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .....++++++|++|+++.. +++|++||+...............                              .....
T Consensus       151 ~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~------------------------------~~~~v  199 (318)
T 4ggc_A          151 QEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGEGGWVPLQTFTQ------------------------------HQGAV  199 (318)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSCEEEEESSCBTTBSCCSEEECC------------------------------CCSCE
T ss_pred             CceEEEEEcCCCCEEEEEec-CcceeEEECCCCcccccceeeecc------------------------------cCCce
Confidence            35778999999999988775 899999999753211111000000                              01456


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++++|++..+.......             ..+.+.+++...   ......          .........+.++|+++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-------------~~~~i~lwd~~~---~~~~~~----------~~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGT-------------SDRHIRIWNVCS---GACLSA----------VDAHSQVCSILWSPHYK  253 (318)
T ss_dssp             EEEEECTTSTTEEEEEECT-------------TTCEEEEEETTT---CCEEEE----------EECSSCEEEEEEETTTT
T ss_pred             EEEEecCCCCcEEEEEecC-------------CCCEEEEEeccc---cccccc----------ccceeeeeeeeeccccc
Confidence            7789999887665432210             111222222111   010100          00123456789999999


Q ss_pred             EEEEEe-CCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        193 YLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       193 ~Lyvs~-r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      .++++. -.++.|.+||+..   .+.+.++. |.                              .+....++|+|||++|
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~---~~~~~~l~-gH------------------------------~~~V~~l~~spdg~~l  299 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPT---MAKVAELK-GH------------------------------TSRVLSLTMSPDGATV  299 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTT---CCEEEEEC-CC------------------------------SSCEEEEEECTTSSCE
T ss_pred             ceEEEEEcCCCEEEEEECCC---CcEEEEEc-CC------------------------------CCCEEEEEEcCCCCEE
Confidence            998754 3578999999854   34444432 22                              1247889999999999


Q ss_pred             EEEcC--CCCCCC
Q psy11412        272 YVSSS--LFSPWD  282 (290)
Q Consensus       272 ~Van~--~~~~~~  282 (290)
                      +.+..  +..-|+
T Consensus       300 ~S~s~D~~v~iWd  312 (318)
T 4ggc_A          300 ASAAADETLRLWR  312 (318)
T ss_dssp             EEEETTTEEEEEC
T ss_pred             EEEecCCeEEEEE
Confidence            98865  555665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.63  E-value=4.6e-07  Score=83.93  Aligned_cols=66  Identities=17%  Similarity=0.142  Sum_probs=43.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCce-eeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~-~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .|.+|++.|||++|||+.. .|.|.+++- + +... .+..+.         .+           .       .....++
T Consensus        19 ~P~~i~~~pdG~~l~V~e~-~G~i~~~~~-~-g~~~~~~~~~~---------~v-----------~-------~~g~~g~   68 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR-GGELRHWQA-G-KGLSAPLSGVP---------DV-----------W-------AHGQGGL   68 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET-TTEEEEEET-T-TEECCCCBSCC---------CC-----------C-------CSTTCSE
T ss_pred             CcEEEEEcCCCCEEEEEeC-CceEEEEeC-C-CceeeEecCCc---------cc-----------c-------cCCCCCc
Confidence            7999999999997888886 589998873 2 1111 111000         00           0       0012588


Q ss_pred             eEEEEccC---CCEEEEEcC
Q psy11412        113 QMFQLSLD---GKRIYVSSS  129 (290)
Q Consensus       113 r~vafsPd---G~~lYv~ne  129 (290)
                      .+|+|+||   +++||++..
T Consensus        69 ~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           69 LDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             EEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEECCCCCCCCEEEEEEe
Confidence            99999998   889999854

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.62  E-value=1.1e-06  Score=81.64  Aligned_cols=172  Identities=14%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             CceEEEEE--cCC-CC-EEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412         33 AMVTDILI--SLD-DR-YLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK  104 (290)
Q Consensus        33 ~~p~~va~--SpD-Gr-~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~  104 (290)
                      ..|+++++  +|+ |+ ++||++. +|.+..|++.+.+..    +++.++.+                            
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f~l----------------------------  178 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAFKM----------------------------  178 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEEEC----------------------------
T ss_pred             CCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEecC----------------------------
Confidence            57889999  885 54 7888876 589999999654332    33444433                            


Q ss_pred             ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                          ++.|.++++++...+||++.|..+.|-...-++   .+..           .+.+..++.+     .+  ...+.+
T Consensus       179 ----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~---~~~~-----------~~~v~~~~~g-----~l--~aDvEG  233 (355)
T 3amr_A          179 ----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD---GGSN-----------GTVIDRADGR-----HL--TRDIEG  233 (355)
T ss_dssp             ----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTT---SCSC-----------CEEEEEBSSS-----SB--CSCEEE
T ss_pred             ----CCCcceEEEcCCCCeEEEecccceEEEEeCCcC---CCCC-----------ceEEEEecCC-----cc--ccCcce
Confidence                368999999999999999988433222110010   0000           0111111100     00  124677


Q ss_pred             EEE--ccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc-CCcc
Q psy11412        185 ILI--SLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT-GSSQ  260 (290)
Q Consensus       185 i~~--SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~P~  260 (290)
                      |++  .+||+ +|++|+.++++..|||...  ..+.++.+.+|...  + -+.+++.++.       .+....+| ..|+
T Consensus       234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~~--~~~~vg~f~Ig~~~--~-idgv~eTDG~-------~v~~~~lG~~fP~  301 (355)
T 3amr_A          234 LTIYYAADGKGYLMASSQGNSSYAIYDRQG--KNKYVADFRITDGP--E-TDGTSDTDGI-------DVLGFGLGPEYPF  301 (355)
T ss_dssp             EEEEECGGGCEEEEEEEGGGTEEEEEESST--TCCEEEEEEECCCS--S-SCCCCSCCCE-------EEECSCCSTTCTT
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEECCC--CCcEEEEEEecCCC--C-ceeeeccCcc-------eEEccccCCCCCC
Confidence            888  78888 8999999999999999852  35688888887531  0 1222232221       12233344 3799


Q ss_pred             eEEEccCCCE
Q psy11412        261 MFQLSLDGKR  270 (290)
Q Consensus       261 ~~a~sPDG~~  270 (290)
                      ++.+..||+.
T Consensus       302 Gl~V~qDg~n  311 (355)
T 3amr_A          302 GIFVAQDGEN  311 (355)
T ss_dssp             CEEEEEESSC
T ss_pred             cEEEEecCCc
Confidence            9999999964

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.61  E-value=7.6e-06  Score=71.66  Aligned_cols=192  Identities=9%  Similarity=0.043  Sum_probs=106.3

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++-|+..++.....-...-...+..++++|+|++|+++.. +|+|++|++.+   .+.+.... +               
T Consensus        48 ~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~-Dg~v~iw~~~~---~~~~~~~~-~---------------  107 (318)
T 4ggc_A           48 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-SAEVQLWDVQQ---QKRLRNMT-S---------------  107 (318)
T ss_dssp             EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-TSEEEEEETTT---TEEEEEEE-C---------------
T ss_pred             EEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC-CCcEEEeecCC---ceeEEEec-C---------------
Confidence            4456665554433200011235789999999999998775 89999999965   33333221 1               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                       .......++++++.++..+..               + .+..++...  ....+..     ..
T Consensus       108 -----------------h~~~~~~~~~~~~~l~s~~~~---------------~-~~~~~~~~~--~~~~~~~-----~~  147 (318)
T 4ggc_A          108 -----------------HSARVGSLSWNSYILSSGSRS---------------G-HIHHHDVRV--AEHHVAT-----LS  147 (318)
T ss_dssp             -----------------CSSCEEEEEEETTEEEEEETT---------------S-EEEEEETTS--SSCEEEE-----EE
T ss_pred             -----------------ccceEEEeecCCCEEEEEecC---------------C-ceEeeecCC--CceeEEE-----Ec
Confidence                             123446778888888876541               1 111111100  0000000     00


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCce-E----------eeEE---eeCce------ecCCCc
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-L----------VGQI---FLGGK------IQSDSG  232 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~-~----------v~~i---~~Gg~------~~~~~~  232 (290)
                          ........+.++++|++|+++. .++.|.+||+....... .          +..+   +.+..      -..+++
T Consensus       148 ----~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
T 4ggc_A          148 ----GHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  222 (318)
T ss_dssp             ----CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred             ----CccCceEEEEEcCCCCEEEEEe-cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence                0123466789999999999888 68999999996422110 0          0000   00110      034566


Q ss_pred             eEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        233 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                      |.+++.....      .............+.|+|+++.++++.
T Consensus       223 i~lwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          223 IRIWNVCSGA------CLSAVDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             EEEEETTTCC------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEeccccc------ccccccceeeeeeeeecccccceEEEE
Confidence            7787754321      011111123578899999999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.59  E-value=1.3e-06  Score=79.98  Aligned_cols=128  Identities=15%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCe-EEEEEcCCCCCceeeeEEeec-ccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLG-GKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~-V~v~dv~d~~~~~~~~~i~~g-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      +.+..++|+|||++|++++. +++ |++||+.+   .+.+..+..| +                              ..
T Consensus       196 ~~v~~~~~s~~g~~l~s~s~-d~~~v~iwd~~~---~~~~~~~~~g~h------------------------------~~  241 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCSQ-DGTIIRVFKTED---GVLVREFRRGLD------------------------------RA  241 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TCSEEEEEETTT---CCEEEEEECTTC------------------------------CS
T ss_pred             CceEEEEECCCCCEEEEEeC-CCCEEEEEECCC---CcEEEEEEcCCC------------------------------CC
Confidence            46789999999999998875 788 99999975   3334333322 1                              14


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec--ccccc--cCccccCccc-----cCCC--
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR--NEMRS--MPLSSLGSWK-----YPAR--  179 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~--~~i~~--~p~~~~~~~~-----~~~~--  179 (290)
                      ....++|||||++|++++.. +               .+.+|++......  ..+..  .+......|.     ++..  
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d-~---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDK-W---------------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETT-C---------------EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             cEEEEEECCCCCEEEEEECC-C---------------EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence            67889999999999987652 1               2222222110000  00000  0000000110     1111  


Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      .....+++++||++|++.. .++.+.+|++..
T Consensus       306 ~~~~~~a~~~d~~~l~~~~-~dg~~~~~~~~~  336 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWP-HTRMIETFKVVF  336 (355)
T ss_dssp             CCCCEEEESSSSEEEEEET-TTTEEEEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEe-CCCeEEEEEEEc
Confidence            1125589999999999888 689999999853

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.58  E-value=5.9e-07  Score=81.74  Aligned_cols=54  Identities=15%  Similarity=0.185  Sum_probs=35.1

Q ss_pred             CCceeEEEEEecCCCccCCCCCCCCCCCce-EEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412          6 DGTYKADKVIDIPAKQVQGYPGGDKVPAMV-TDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p-~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      +|+++ -.++|+..++....+   ...... .++++||||++|+.+.. ++.|.+||+..
T Consensus        57 ~g~~~-l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~  111 (388)
T 3pe7_A           57 DGPWN-YYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLAT  111 (388)
T ss_dssp             TSSCE-EEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTT
T ss_pred             CCCce-EEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCC
Confidence            45443 356777766544332   122222 25689999999998875 57999999975

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.58  E-value=1.3e-06  Score=87.04  Aligned_cols=117  Identities=7%  Similarity=-0.012  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.++|+++.++.||+++...+.|.+++.+. ...+.+.   .+                              ....|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~---~~------------------------------~l~~P  129 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF---WQ------------------------------ELDQP  129 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CS------------------------------SCSCC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEE---eC------------------------------CCCCC
Confidence            37999999999999999999999999999853 2222221   01                              01579


Q ss_pred             eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +.|+++|.+.+||+++-.. ..+.+..     -+|...           ..+..           .....|.+|++++++
T Consensus       130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~-----~dG~~~-----------~~l~~-----------~~~~~P~Glald~~~  182 (619)
T 3s94_A          130 RAIALDPSSGFMYWTDWGEVPKIERAG-----MDGSSR-----------FIIIN-----------SEIYWPNGLTLDYEE  182 (619)
T ss_dssp             CCEEEETTTTEEEEEECSSSCEEEEEE-----TTSCSC-----------EEEEC-----------SSCSSEEEEEEETTT
T ss_pred             ceEEEecCCCeEEEeccCCCCEEEEEE-----CCCCce-----------EEEEe-----------CCCCCCcEEEEEccC
Confidence            9999999999999986311 1111100     011100           00100           012468899999999


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++||+++...+.|..+|+.
T Consensus       183 ~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          183 QKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             TEEEEEETTTCCEEEESSS
T ss_pred             CEEEEEeCCCCeEEEecCC
Confidence            9999999989999999884

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.57  E-value=6.5e-07  Score=87.98  Aligned_cols=31  Identities=3%  Similarity=-0.077  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCC---------CCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWM---------HGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~---------~g~V~v~dv~d   64 (290)
                      .+.+++|||||++|+.+...         ..+|.+||+..
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            56789999999999877642         14788888854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.57  E-value=4e-07  Score=90.49  Aligned_cols=50  Identities=10%  Similarity=-0.009  Sum_probs=36.0

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ..-.+.|+..++.....   .+......+++||||++|+.+.  +++|.+|++..
T Consensus        90 ~~i~~~d~~~g~~~~~~---~l~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~  139 (719)
T 1z68_A           90 ATYYIYDLSNGEFVRGN---ELPRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPG  139 (719)
T ss_dssp             EEEEEEETTTTEECCSS---CCCSSBCCEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred             eEEEEEECCCCccccce---ecCcccccceECCCCCEEEEEE--CCeEEEEeCCC
Confidence            45567777776652211   3445677899999999998775  57999999865

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.56  E-value=3.8e-06  Score=78.48  Aligned_cols=174  Identities=18%  Similarity=0.218  Sum_probs=100.8

Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412         39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  118 (290)
Q Consensus        39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs  118 (290)
                      ++++++++|+++.. +|+|++||+.+   .+.+..+. ++                              ...+..++|+
T Consensus       127 ~~~~~~~~l~sgs~-dg~i~vwd~~~---~~~~~~~~-~h------------------------------~~~V~~l~~~  171 (464)
T 3v7d_B          127 CLQFEDNYVITGAD-DKMIRVYDSIN---KKFLLQLS-GH------------------------------DGGVWALKYA  171 (464)
T ss_dssp             EEEEETTEEEEEET-TSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEEEEEEC
T ss_pred             EEEECCCEEEEEcC-CCcEEEEECCC---CcEEEEEe-CC------------------------------CcCEEEEEEc
Confidence            34557888887764 89999999865   33333322 11                              1467889999


Q ss_pred             cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc--cCCCEEEE
Q psy11412        119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS--LDDRYLYT  196 (290)
Q Consensus       119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S--pDGr~Lyv  196 (290)
                      |++ .|++++.               ++ .+.+++..+   .+.+..+.     +    .......++++  +|+++|++
T Consensus       172 ~~~-~l~s~s~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          172 HGG-ILVSGST---------------DR-TVRVWDIKK---GCCTHVFE-----G----HNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             STT-EEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEEEESSSCEEEEE
T ss_pred             CCC-EEEEEeC---------------CC-CEEEEECCC---CcEEEEEC-----C----CCCccEEEEEecCCCCCEEEE
Confidence            999 6665544               22 333344322   11111100     0    12345667777  68899988


Q ss_pred             EeCCCCcEEEEEecCCCCceE--------------------ee----------EEee-Ccee---cCCCceEEecCCCCC
Q psy11412        197 SNWMHGDIRQYDIRDTAHPVL--------------------VG----------QIFL-GGKI---QSDSGVTVIDDPELD  242 (290)
Q Consensus       197 s~r~~~~V~v~Dv~d~~~~~~--------------------v~----------~i~~-Gg~~---~~~~~v~~~~~~~~~  242 (290)
                      +. .+++|.+||+........                    +.          .+.. +..+   ..+++|.++|.....
T Consensus       223 ~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          223 GS-RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK  301 (464)
T ss_dssp             EE-TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             Ec-CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            88 689999999964321100                    10          1111 1111   467889999865421


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      .   ...+.+.  .+....++|+|+|++|++++.  .+.-|+
T Consensus       302 ~---~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd  338 (464)
T 3v7d_B          302 C---LYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWD  338 (464)
T ss_dssp             E---EEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             E---EEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            0   0011111  135789999999999999865  444554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.4e-06  Score=85.07  Aligned_cols=126  Identities=13%  Similarity=0.012  Sum_probs=71.4

Q ss_pred             CceEEEEEcCC------CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         33 AMVTDILISLD------DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        33 ~~p~~va~SpD------Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      +.+..++|+|+      +++|++++. +|+|++||+......... .....      .+..              .+.+.
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~-DgtvrlWd~~~~~~~~~~-~~~~~------~p~~--------------~l~~h  265 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQ-EGTINFLEIIDNATDVHV-FKMCE------KPSL--------------TLSLA  265 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEET-TSCEEEEECCCCSSSSSE-EECCC------SCSE--------------EECCT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEec-CCeEEEEEcCCCcccccc-ceeec------CceE--------------EEEcC
Confidence            45789999997      578887765 899999999653211000 00000      0000              00000


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE-
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI-  185 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i-  185 (290)
                        ......++|+|++ .|++.+.               + +.+.++++.+.  ......     ..+    ....+..| 
T Consensus       266 --~~~v~sv~~s~~~-~lasgs~---------------D-gtV~lWD~~~~--~~~~~~-----~~~----H~~~V~sv~  315 (524)
T 2j04_B          266 --DSLITTFDFLSPT-TVVCGFK---------------N-GFVAEFDLTDP--EVPSFY-----DQV----HDSYILSVS  315 (524)
T ss_dssp             --TTCEEEEEESSSS-EEEEEET---------------T-SEEEEEETTBC--SSCSEE-----EEC----SSSCEEEEE
T ss_pred             --CCCEEEEEecCCC-eEEEEeC---------------C-CEEEEEECCCC--CCceEE-----eec----ccccEEEEE
Confidence              1457789999975 6776554               2 34555554321  000000     000    12356677 


Q ss_pred             -EEccCC-CEEEEEeCCCCcEEEEEecC
Q psy11412        186 -LISLDD-RYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       186 -~~SpDG-r~Lyvs~r~~~~V~v~Dv~d  211 (290)
                       +++||| ++|+++. .+++|.+||+.+
T Consensus       316 ~~~s~~g~~~laS~S-~D~tvklWD~~~  342 (524)
T 2j04_B          316 TAYSDFEDTVVSTVA-VDGYFYIFNPKD  342 (524)
T ss_dssp             EECCTTSCCEEEEEE-TTSEEEEECGGG
T ss_pred             EEcCCCCCeEEEEec-cCCeEEEEECCC
Confidence             679999 7777776 789999999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.56  E-value=2.2e-06  Score=85.51  Aligned_cols=115  Identities=12%  Similarity=0.091  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++|+++.++.||+++...+.|.+.+++. ...+.+.   ..                              ....|+
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~---~~------------------------------~l~~P~  126 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLV---WK------------------------------DLDSPR  126 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEE---CS------------------------------SCCCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEE---eC------------------------------CCCCcc
Confidence            6999999999999999999999999999853 2222221   01                              015799


Q ss_pred             EEEEccCCCEEEEEcCC-CCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSL-FSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel-~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .|+++|...+||+++-. ...+....     -+|...           ..+.            .....|.+|+|+++++
T Consensus       127 ~iavdp~~G~lY~tD~g~~~~I~r~~-----~dG~~~-----------~~l~------------~~~~~P~GlalD~~~~  178 (628)
T 4a0p_A          127 ALALDPAEGFMYWTEWGGKPKIDRAA-----MDGSER-----------TTLV------------PNVGRANGLTIDYAKR  178 (628)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEE-----TTSCSC-----------EEEE------------CSCSSEEEEEEETTTT
T ss_pred             cEEEccCCCeEEEeCCCCCCEEEEEe-----CCCCce-----------EEEE------------CCCCCcceEEEccccC
Confidence            99999998899998631 11111000     011100           0010            0124688999999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +||+++...+.|..+|+.
T Consensus       179 ~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          179 RLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEcCC
Confidence            999999999999999984

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.54  E-value=1.7e-06  Score=80.50  Aligned_cols=185  Identities=16%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCC-------EEEEEeCC--CCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDR-------YLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr-------~Lyva~~~--~g~V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      --|.|+ ++++...+   +. +.++.|.+-|+-+       .+|+++..  .++|++|+++.. ..+ +..+  +...  
T Consensus        52 L~Vydl-~G~~l~~~---~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~-l~~i--~~~~--  120 (355)
T 3amr_A           52 LVVYSL-DGKMLHSY---NT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGT-LQSM--TDPD--  120 (355)
T ss_dssp             EEEEET-TSCEEEEE---CC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCC-EEEC--SCTT--
T ss_pred             EEEEcC-CCcEEEEc---cC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCc-eeec--cccc--
Confidence            456777 44444443   22 5688888877432       57888988  899999998532 112 2211  1000  


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccC-CCceEEEE--ccC-CC-EEEEEcCCCCCcceeecccccCCCceeecceeeee
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFT-GSSQMFQL--SLD-GK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEF  157 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g-~gPr~vaf--sPd-G~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~  157 (290)
                                      .+.   .  .+ ..|.++++  +|+ |+ ++||+++               ++ .+..+++.+.
T Consensus       121 ----------------~pv---~--t~~~~pyGlcly~~~~~g~~yafV~~k---------------~G-~~~q~~l~~~  163 (355)
T 3amr_A          121 ----------------HPI---A--TAINEVYGFTLYHSQKTGKYYAMVTGK---------------EG-EFEQYELKAD  163 (355)
T ss_dssp             ----------------SCE---E--CCCSSCCCEEEEECTTTCCEEEEEECS---------------SS-EEEEEEEEEC
T ss_pred             ----------------cCc---C--CCCCCeeEEEEEecCCCCcEEEEEECC---------------CC-eEEEEEEEeC
Confidence                            000   0  01 47888999  885 44 6887766               22 3333333321


Q ss_pred             ----eecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC--CceEeeEEeeCceecCCC
Q psy11412        158 ----IQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA--HPVLVGQIFLGGKIQSDS  231 (290)
Q Consensus       158 ----~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~--~~~~v~~i~~Gg~~~~~~  231 (290)
                          ...+.++++          +.++.+.+|++.+...+||++.+. ..|+.||.....  ..+.+..+..++      
T Consensus       164 ~~g~~~~~lVR~f----------~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~------  226 (355)
T 3amr_A          164 KNGYISGKKVRAF----------KMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRH------  226 (355)
T ss_dssp             TTSCEEEEEEEEE----------ECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSS------
T ss_pred             CCCcccceEEEEe----------cCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCc------
Confidence                112223321          223567899999999999999965 447777653211  244555443222      


Q ss_pred             ceEEecCCCCCCCCCcceeecccccCCcceEEE--ccCCC-EEEEEcC---CCCCCCcc
Q psy11412        232 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL--SLDGK-RIYVSSS---LFSPWDKE  284 (290)
Q Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~--sPDG~-~L~Van~---~~~~~~~~  284 (290)
                                             +...+.+|++  .++|+ +|+|+|+   .|..++++
T Consensus       227 -----------------------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          227 -----------------------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             -----------------------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             -----------------------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence                                   1125899999  77888 8999986   55555553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.53  E-value=4.4e-07  Score=94.80  Aligned_cols=143  Identities=12%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             ceEEEEEc-CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILIS-LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~S-pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+.+++|| |||++|+++.  .+.|.+|++... ....+    ..+                             .+..+
T Consensus       297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~-~~~~~----~~~-----------------------------~~~~~  340 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGT-YVLKV----PEP-----------------------------LRIRY  340 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE--TTEEEEECTTSS-BEEEC----SCC-----------------------------SCEEE
T ss_pred             ccceeeecCCCCCEEEEEE--cCEEEEEcCCCC-ceEEc----cCC-----------------------------CcceE
Confidence            46789999 9999998876  579999998542 11111    000                             01157


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++++|+ ||++++.++..                ..+  +++.+..... ...+.         .....+..++|||||+
T Consensus       341 ~~~~~s-dg~~l~~~s~~----------------~~l--~~~~d~~~~~-~~~l~---------~~~~~~~~~~~SpDG~  391 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTRE----------------GDF--LGIYDYRTGK-AEKFE---------ENLGNVFAMGVDRNGK  391 (1045)
T ss_dssp             EEECSS-SEEEEEEEETT----------------EEE--EEEEETTTCC-EEECC---------CCCCSEEEEEECTTSS
T ss_pred             EeeeEc-CCCeEEEEECC----------------Cce--EEEEECCCCC-ceEec---------CCccceeeeEECCCCC
Confidence            789999 99999887651                011  1111110000 11000         0123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +|++++ .++.|.+||+.. +..+.+  . .+..                              +....++|||||++|+
T Consensus       392 ~la~~~-~~~~v~~~d~~t-g~~~~~--~-~~~~------------------------------~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          392 FAVVAN-DRFEIMTVDLET-GKPTVI--E-RSRE------------------------------AMITDFTISDNSRFIA  436 (1045)
T ss_dssp             EEEEEE-TTSEEEEEETTT-CCEEEE--E-ECSS------------------------------SCCCCEEECTTSCEEE
T ss_pred             EEEEEC-CCCeEEEEECCC-CceEEe--c-cCCC------------------------------CCccceEECCCCCeEE
Confidence            999887 567999999853 222211  1 1220                              1357899999999998


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      .+..
T Consensus       437 ~~~~  440 (1045)
T 1k32_A          437 YGFP  440 (1045)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.53  E-value=4.3e-07  Score=91.41  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      ..+++++|||++||.+   +++|.+||+.... ...+   ..++...                         ........
T Consensus        19 ~~~~~w~~dg~~~~~~---~~~i~~~~~~~~~-~~~~---~~~~~~~-------------------------~~~~~~~~   66 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ---ENNILVFNAEYGN-SSVF---LENSTFD-------------------------EFGHSIND   66 (740)
T ss_dssp             CCCEEECSSSEEEEEE---TTEEEEEETTTCC-EEEE---ECTTTTT-------------------------TCCSCCCE
T ss_pred             ccccEECCCCcEEEEc---CCcEEEEECCCCc-eEEE---Eechhhh-------------------------hhcccccc
Confidence            3478999999988875   6899999997632 2211   1111000                         00012234


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++|||||++|+........+...       ..+.+.++++..   .+ ...     +.    ..+.....++|||||+.|
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~-------~~~~~~~~d~~~---~~-~~~-----l~----~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHS-------YTASYDIYDLNK---RQ-LIT-----EE----RIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSC-------EEEEEEEEETTT---TE-ECC-----SS----CCCTTEEEEEECSSTTCE
T ss_pred             eEECCCCCEEEEEECCeeeEEEc-------cceEEEEEECCC---Cc-EEE-----cc----cCCCcceeeEECCCCCEE
Confidence            89999999988865421111000       001111122211   11 110     00    012345678999999988


Q ss_pred             EEEeCCCCcEEEEEecC
Q psy11412        195 YTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d  211 (290)
                      +...  ++.|.+||+..
T Consensus       127 a~~~--~~~i~~~~~~~  141 (740)
T 4a5s_A          127 AYVW--NNDIYVKIEPN  141 (740)
T ss_dssp             EEEE--TTEEEEESSTT
T ss_pred             EEEE--CCeEEEEECCC
Confidence            7654  46899998853

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.52  E-value=1.1e-06  Score=77.51  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=75.9

Q ss_pred             CceEEEEEc----CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         33 AMVTDILIS----LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        33 ~~p~~va~S----pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ..|.+++++    |||++||+++..++.|.+|+....+.......+..-                    +      .  .
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------------------~------~--~  223 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--------------------P------G--T  223 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--------------------C------C--C
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--------------------C------C--C
Confidence            368899999    999999999988899999998521211111111000                    0      0  0


Q ss_pred             C-CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        109 T-GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       109 g-~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                      . ..|.+++++++|+ +|+++...+               .+..++..+   .+.+..+        ..+ ...+.+++|
T Consensus       224 ~~~~p~~i~~d~~G~-l~v~~~~~~---------------~i~~~d~~~---g~~~~~~--------~~~-~~~~~~i~~  275 (314)
T 1pjx_A          224 HEGGADGMDFDEDNN-LLVANWGSS---------------HIEVFGPDG---GQPKMRI--------RCP-FEKPSNLHF  275 (314)
T ss_dssp             SSCEEEEEEEBTTCC-EEEEEETTT---------------EEEEECTTC---BSCSEEE--------ECS-SSCEEEEEE
T ss_pred             CCCCCCceEECCCCC-EEEEEcCCC---------------EEEEEcCCC---CcEeEEE--------eCC-CCCceeEEE
Confidence            1 3589999999996 676653111               222222110   0011100        011 145788999


Q ss_pred             ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        188 SLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       188 SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +|||++||+++..++.|..|++..
T Consensus       276 ~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          276 KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999999999997788999998853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.52  E-value=2.3e-06  Score=80.04  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      .++++++++|++++. +|.|++||+..   .+.+..+...                               ......++|
T Consensus       274 ~~~~~~~~~l~~~~~-d~~i~vwd~~~---~~~~~~~~~~-------------------------------~~~v~~~~~  318 (464)
T 3v7d_B          274 RTVSGHGNIVVSGSY-DNTLIVWDVAQ---MKCLYILSGH-------------------------------TDRIYSTIY  318 (464)
T ss_dssp             EEEEEETTEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCEEEEEE
T ss_pred             EEEcCCCCEEEEEeC-CCeEEEEECCC---CcEEEEecCC-------------------------------CCCEEEEEE
Confidence            356899999998875 88999999965   3333322111                               146788999


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      +|+|+++++.+.               ++ .+.+++...   .+.+..+.     +    .......++++  +++|+++
T Consensus       319 ~~~~~~l~sg~~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          319 DHERKRCISASM---------------DT-TIRIWDLEN---GELMYTLQ-----G----HTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             ETTTTEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEEC--SSEEEEE
T ss_pred             cCCCCEEEEEeC---------------CC-cEEEEECCC---CcEEEEEe-----C----CCCcEEEEEEc--CCEEEEE
Confidence            999999998765               22 333333321   11121110     1    12345667776  6888888


Q ss_pred             eCCCCcEEEEEecC
Q psy11412        198 NWMHGDIRQYDIRD  211 (290)
Q Consensus       198 ~r~~~~V~v~Dv~d  211 (290)
                      . .++.|.+||+.+
T Consensus       369 s-~dg~v~vwd~~~  381 (464)
T 3v7d_B          369 A-ADGSIRGWDAND  381 (464)
T ss_dssp             E-TTSEEEEEETTT
T ss_pred             e-CCCcEEEEECCC
Confidence            8 689999999965

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.51  E-value=1.5e-06  Score=76.97  Aligned_cols=122  Identities=15%  Similarity=0.078  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         33 AMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~--~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ++..++.|+.  .+||.++..  ..+|+++|+.+   .+++.++.++                                .
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~t---gkv~~~~~l~--------------------------------~   63 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLET---GRILQRAEVP--------------------------------P   63 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTT---CCEEEEEECC--------------------------------T
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCC---CCEEEEEeCC--------------------------------C
Confidence            3667899975  689999654  35899999865   4555555443                                2


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+.+..+.++|++||+++-.               .+.+.++|..+   .+.+.+++..          .  .+..+++|
T Consensus        64 ~~fgeGi~~~~~~ly~ltw~---------------~~~v~v~D~~t---l~~~~ti~~~----------~--~Gwglt~d  113 (243)
T 3mbr_X           64 PYFGAGIVAWRDRLIQLTWR---------------NHEGFVYDLAT---LTPRARFRYP----------G--EGWALTSD  113 (243)
T ss_dssp             TCCEEEEEEETTEEEEEESS---------------SSEEEEEETTT---TEEEEEEECS----------S--CCCEEEEC
T ss_pred             CcceeEEEEeCCEEEEEEee---------------CCEEEEEECCc---CcEEEEEeCC----------C--CceEEeeC
Confidence            34444455668999998642               12232333322   2233332221          1  12456789


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |+.||+|+ ++++|+++|.   .+.+.+++|.++.
T Consensus       114 g~~L~vSd-gs~~l~~iDp---~t~~~~~~I~V~~  144 (243)
T 3mbr_X          114 DSHLYMSD-GTAVIRKLDP---DTLQQVGSIKVTA  144 (243)
T ss_dssp             SSCEEEEC-SSSEEEEECT---TTCCEEEEEECEE
T ss_pred             CCEEEEEC-CCCeEEEEeC---CCCeEEEEEEEcc
Confidence            99999999 7999999864   4577888888763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.51  E-value=2e-06  Score=86.48  Aligned_cols=47  Identities=15%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .+.|+..++.....   ..++....+++||||++|+.+.  ++.|.+|++..
T Consensus        95 ~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~  141 (740)
T 4a5s_A           95 DIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPN  141 (740)
T ss_dssp             EEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred             EEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEE--CCeEEEEECCC
Confidence            47888877755432   2345678999999999987663  57999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.48  E-value=2.2e-06  Score=79.81  Aligned_cols=118  Identities=9%  Similarity=0.040  Sum_probs=77.5

Q ss_pred             CCceEEEEEcCCCCEEEEE--eCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         32 PAMVTDILISLDDRYLYTS--NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva--~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .+.+..++++|++..++++  +..+++|++||+..   .+.+..+..+                                
T Consensus       276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~--------------------------------  320 (420)
T 4gga_A          276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAH--------------------------------  320 (420)
T ss_dssp             SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECS--------------------------------
T ss_pred             CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccc--------------------------------
Confidence            4467889999987766544  33478999999865   3343333222                                


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..+..+.|+|+++.++++...              ..+.+.+++..+   .+.+..     +.+    ....+..|+|||
T Consensus       321 ~~v~~~~~~~~~~~lv~~sg~--------------~d~~I~iwd~~~---~~~v~~-----l~g----H~~~V~~l~~sp  374 (420)
T 4gga_A          321 SQVCSILWSPHYKELISGHGF--------------AQNQLVIWKYPT---MAKVAE-----LKG----HTSRVLSLTMSP  374 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEECT--------------TTCCEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECT
T ss_pred             cceeeeeecCCCCeEEEEEec--------------CCCEEEEEECCC---CcEEEE-----EcC----CCCCEEEEEEcC
Confidence            467789999999999987541              112333343322   112221     111    124578899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ||++|+++. .|++|.+||+.+
T Consensus       375 dg~~l~S~s-~D~tvriWdv~~  395 (420)
T 4gga_A          375 DGATVASAA-ADETLRLWRCFE  395 (420)
T ss_dssp             TSSCEEEEE-TTTEEEEECCSC
T ss_pred             CCCEEEEEe-cCCeEEEEECCC
Confidence            999999888 789999999965

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.48  E-value=4.8e-06  Score=83.23  Aligned_cols=61  Identities=15%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCC----eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHG----DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g----~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ...++++||||++|+.+...+|    +|++||+...   +.+... ..+                               
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~-~~~-------------------------------  170 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV-LER-------------------------------  170 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE-EEE-------------------------------
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCccc-ccC-------------------------------
Confidence            3568999999999976643233    8999999652   222111 110                               


Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      .....++|||||++||.+..
T Consensus       171 ~~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          171 VKFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             ECSCCEEECTTSSEEEEEEC
T ss_pred             cccceEEEEeCCCEEEEEEE
Confidence            12345899999999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.47  E-value=1.3e-06  Score=79.29  Aligned_cols=50  Identities=10%  Similarity=-0.040  Sum_probs=30.6

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCCC-----CeEEEEEcC
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWMH-----GDIRQYDIR   63 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~~-----g~V~v~dv~   63 (290)
                      .-.++|+..++.....   .-.....++++|| ||++|+....+.     ..|.+|++.
T Consensus       169 ~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          169 RLIKVDIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             EEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             eEEEEECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence            4456777665543322   2234577899999 888666554332     368888874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=1.8e-06  Score=77.70  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      .|.+++++++|+.+|+... ++.|..|+..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~-~~~i~~~~~~   48 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQ-DGRVIKYEGP   48 (322)
T ss_dssp             CCCCEECCTTCSSEEEECT-TSEEEEECCT
T ss_pred             CceEEEEcCCCCEEEEEcC-CCeEEEECCC
Confidence            6899999999998988764 6889888764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.43  E-value=9.8e-06  Score=73.38  Aligned_cols=31  Identities=3%  Similarity=0.043  Sum_probs=27.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .+.+.+++||++.||+++..++.|..||...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~   80 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS   80 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC
Confidence            5788999999999999988889999999754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=98.41  E-value=9.8e-06  Score=79.32  Aligned_cols=207  Identities=11%  Similarity=0.092  Sum_probs=120.7

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--------------eEEEEEcCCCCCceeeeEEeecc
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--------------DIRQYDIRDTAHPVLVGQIFLGG   78 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--------------~V~v~dv~d~~~~~~~~~i~~g~   78 (290)
                      ..||....+|.-..   .|++....+..+++|++.+.++|.+.              -+.++++.....  .   +.- |
T Consensus       220 ~~iD~~tm~v~~Qv---~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~--~---vk~-G  290 (638)
T 3sbq_A          220 NAIDAETMEMAFQV---IVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA--A---VKA-G  290 (638)
T ss_dssp             EEEETTTCSEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH--H---HHT-T
T ss_pred             EEEcCCccEEEEEE---EcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH--H---Hhc-C
Confidence            34666666664443   56777778889999999999998642              255555421000  0   000 1


Q ss_pred             cccCCC--ceEEecCCCCcC-CCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccC--CCceeecce
Q psy11412         79 KIQSDS--GVTVIDDPELDK-QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVK--TDAAFGSDE  153 (290)
Q Consensus        79 ~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~--~g~~~~~~~  153 (290)
                      ....-+  .+-|++-..... .+.-.  .-.+....|+++-++|||+++|+++.|+.+++++.+.....  +++.   ++
T Consensus       291 ~~~~~~g~gv~ViD~~~~~~~~~~~~--~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~---~~  365 (638)
T 3sbq_A          291 DFITLGDSKTPVLDGRKKDGKDSKFT--RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL---AD  365 (638)
T ss_dssp             CCBCCTTCCCCEEECSCBTTBCCSSE--EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC---SC
T ss_pred             CeEEECCCCeeEEccccccccCCceE--EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc---cC
Confidence            111111  344554321100 00001  11123468999999999999999999887777654321000  0100   00


Q ss_pred             eeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC------CC-ceEeeEEeeCce
Q psy11412        154 IMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT------AH-PVLVGQIFLGGK  226 (290)
Q Consensus       154 ~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~------~~-~~~v~~i~~Gg~  226 (290)
                      .     +..+.        . ....+-+|.+.+|+++| .+|+|.+.+++|..|++...      .. ...++.+++.= 
T Consensus       366 ~-----~~~~~--------a-e~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y-  429 (638)
T 3sbq_A          366 P-----RDVIV--------G-EPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY-  429 (638)
T ss_dssp             G-----GGGEE--------E-CCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-
T ss_pred             c-----ccceE--------e-eccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc-
Confidence            0     00010        0 01123478999999999 99999999999999999531      01 23566666643 


Q ss_pred             ecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE------ccCCCEEEEEcCCCCC
Q psy11412        227 IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL------SLDGKRIYVSSSLFSP  280 (290)
Q Consensus       227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~------sPDG~~L~Van~~~~~  280 (290)
                                                     +|-+..-      .||||+|.+.|.+.+-
T Consensus       430 -------------------------------qpGH~~~~~get~~~dGk~lv~lnK~skd  458 (638)
T 3sbq_A          430 -------------------------------QPGHLHASLCETNEADGKWLVALSKFSKD  458 (638)
T ss_dssp             -------------------------------CEEEEEETTTTSTTCCSCEEEEEESCCTT
T ss_pred             -------------------------------CCcccccCCCccCCCCccEEEEecccccc
Confidence                                           3444544      7999999999986554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.40  E-value=7.2e-06  Score=76.31  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=79.5

Q ss_pred             ceEEEEEcCC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      ....+++|||    +++++.++   ..+.+|++.+   .+++.....|+                              .
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g---~~~~v~~l~~---g~lv~ss~~g~------------------------------d  156 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSG---NIKAVLGLTK---RRLVSSSGTLS------------------------------D  156 (356)
T ss_dssp             EEEEECC------CCEEEEEEE---EEEEEEEETT---TEEEEEESSST------------------------------T
T ss_pred             ceEEEEECCCccccccEEEeCC---CeEEEEecCC---CcEEEecccCC------------------------------C
Confidence            5678999999    99998754   4688999853   34443211111                              1


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ...+-++|+|||+.+.....                                                .+...+.++|||
T Consensus       157 ~~V~~~~~s~dG~~~~s~~~------------------------------------------------~~~~v~~l~fs~  188 (356)
T 2w18_A          157 QQVEVMTFAEDGGGKENQFL------------------------------------------------MPPEETILTFAE  188 (356)
T ss_dssp             CEEEEEEECTTSCEEEEEEE------------------------------------------------CCCSSCEEEEEE
T ss_pred             CcEEEEEECCCCceeeeecc------------------------------------------------CCCceeeEEeec
Confidence            46788999999997764211                                                001123478888


Q ss_pred             ---CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                         ||..|..+. .+++|.+||+..   .+.+.++..+...                            ......++|||
T Consensus       189 ~~g~~~~LaSgS-~D~TIkIWDl~T---Gk~l~tL~g~~~~----------------------------v~~v~~vafSp  236 (356)
T 2w18_A          189 VQGMQEALLGTT-IMNNIVIWNLKT---GQLLKKMHIDDSY----------------------------QASVCHKAYSE  236 (356)
T ss_dssp             EETSTTEEEEEE-TTSEEEEEETTT---CCEEEEEECCC-------------------------------CCCEEEEEEE
T ss_pred             cCCCCceEEEec-CCCcEEEEECCC---CcEEEEEcCCCcc----------------------------eeeeEEEEECC
Confidence               778888777 799999999953   4455555432210                            01356679999


Q ss_pred             CCCEEEEEc
Q psy11412        267 DGKRIYVSS  275 (290)
Q Consensus       267 DG~~L~Van  275 (290)
                      ||+++++.+
T Consensus       237 dG~~lvs~s  245 (356)
T 2w18_A          237 MGLLFIVLS  245 (356)
T ss_dssp             TTEEEEEEC
T ss_pred             CCCEEEEec
Confidence            999998765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.38  E-value=4.1e-05  Score=71.32  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=17.8

Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      .|++++|||||++|||++.
T Consensus       222 ~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          222 FANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEG
T ss_pred             ccCcceECCCCCEEEEEeC
Confidence            6999999999999999976

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.37  E-value=3.4e-06  Score=78.19  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             EEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEE
Q psy11412         37 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  116 (290)
Q Consensus        37 ~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~va  116 (290)
                      ...+++++++|+++. .+++|++||+...   ........+. +                .       ++  ......++
T Consensus        94 ~~~~~~~~~~las~~-~d~~v~lw~~~~~---~~~~~~~~~~-~----------------~-------gH--~~~v~~v~  143 (393)
T 4gq1_A           94 VNSSPVYSLFLACVC-QDNTVRLIITKNE---TIITQHVLGG-K----------------S-------GH--HNFVNDID  143 (393)
T ss_dssp             ---CCEEEEEEEEEE-TTSCEEEEEEETT---EEEEEEEECT-T----------------T-------SC--SSCEEEEE
T ss_pred             eeecCCCCCEEEEEe-CCCcEEEEECCCC---ccceeeeecc-c----------------C-------CC--CCceEEEE
Confidence            345677777887666 4899999998652   1111111110 0                0       01  14678899


Q ss_pred             Ecc--------CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        117 LSL--------DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       117 fsP--------dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      |+|        ||++|+.++.                ++.+.+||+..   .+.+...         ......+..++|+
T Consensus       144 ~~p~~~~~~~~d~~~las~s~----------------D~tv~~Wd~~~---~~~~~~~---------~~~~~~v~~v~~~  195 (393)
T 4gq1_A          144 IADVYSADNRLAEQVIASVGD----------------DCTLIIWRLTD---EGPILAG---------YPLSSPGISVQFR  195 (393)
T ss_dssp             EEEEECTTCSEEEEEEEEEET----------------TSEEEEEEEET---TEEEEEE---------EECSSCEEEEEEE
T ss_pred             EccccccccCCCCCEEEEEEC----------------CCeEEEEECCC---Cceeeee---------cCCCCCcEEEEEC
Confidence            998        8998887664                23555566533   1111110         1122456789999


Q ss_pred             cCCC-EEEEEeCCCCcEEEEEecC
Q psy11412        189 LDDR-YLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       189 pDGr-~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      |++. +|+++. .+++|.+||+..
T Consensus       196 p~~~~~l~~~~-~d~~v~~wd~~t  218 (393)
T 4gq1_A          196 PSNPNQLIVGE-RNGNIRIFDWTL  218 (393)
T ss_dssp             TTEEEEEEEEE-TTSEEEEEETTC
T ss_pred             CCCCceEEecC-CCCEEEEEECCC
Confidence            9986 455555 789999999964

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=98.34  E-value=9.2e-06  Score=79.51  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             EEEEecCCC-----ccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412         12 DKVIDIPAK-----QVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV   86 (290)
Q Consensus        12 ~~~~~~~~~-----~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~   86 (290)
                      .+|||....     ....+   ++++.+||++.++|||+++++++-.+.+|.|+|++.-  .....    ++.+.     
T Consensus       300 v~ViD~~~~~~~~~~~~~~---iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~--~~~~~----~k~~~-----  365 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRY---VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKL--PDLFA----GKLAD-----  365 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEE---EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH--HHHHT----TCCSC-----
T ss_pred             eeEEccccccccCCceEEE---EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehh--hhhhh----ccccC-----
Confidence            468888762     23333   3789999999999999999999999999999999631  00000    00000     


Q ss_pred             EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCC
Q psy11412         87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP  133 (290)
Q Consensus        87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~  133 (290)
                                 +..........|-||.|.+|+++| .+|++--+.++
T Consensus       366 -----------~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          366 -----------PRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             -----------GGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             -----------cccceEeeccCCCcccEEEECCCC-ceEeeeeecce
Confidence                       000000111236799999999999 89987655444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.33  E-value=1.5e-05  Score=76.42  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.+++|.|||+ |||+....+.|.+++..+ +....+..+  ....                       .......++.
T Consensus        28 ~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~-g~~~~~~~~--~~~~-----------------------~~~~g~~Gll   80 (454)
T 1cru_A           28 KPHALLWGPDNQ-IWLTERATGKILRVNPES-GSVKTVFQV--PEIV-----------------------NDADGQNGLL   80 (454)
T ss_dssp             SEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEEC--TTCC-----------------------CCTTSSCSEE
T ss_pred             CceEEEEcCCCc-EEEEEcCCCEEEEEECCC-CcEeEEecC--Cccc-----------------------cccCCCCcee
Confidence            799999999998 667776556788776433 222222111  0000                       0000126788


Q ss_pred             EEEEccC---CCEEEEEcC
Q psy11412        114 MFQLSLD---GKRIYVSSS  129 (290)
Q Consensus       114 ~vafsPd---G~~lYv~ne  129 (290)
                      +|+|+||   +++||++..
T Consensus        81 gia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           81 GFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             EEEECTTTTTSCEEEEEEE
T ss_pred             EEEECCCcCcCCEEEEEEe
Confidence            9999998   899999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.31  E-value=6.1e-06  Score=73.86  Aligned_cols=19  Identities=32%  Similarity=0.445  Sum_probs=14.9

Q ss_pred             CceEEEEccCCCEEEEEcC
Q psy11412        111 SSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~ne  129 (290)
                      ....++|||||++|+.+..
T Consensus        60 ~~~~~~~SpDg~~la~~~~   78 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRA   78 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEe
Confidence            3466899999998887654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.29  E-value=1.1e-05  Score=72.27  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=39.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC--C--eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMH--G--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~--g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ..+..+++||||++|+.+....  +  .|.+|++.. +....+.   ..                               
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~---~~-------------------------------  103 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKIL---EA-------------------------------  103 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEE---EE-------------------------------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEEE---cC-------------------------------
Confidence            3567899999999988765422  3  377777653 2222211   11                               


Q ss_pred             CCCceEEEEccCCCEEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSS  128 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~n  128 (290)
                      .. ...++|||||++|+++.
T Consensus       104 ~~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A          104 KN-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             SE-EEEEEECTTSSEEEEEE
T ss_pred             CC-ccceeECCCCCEEEEEE
Confidence            12 67799999999988875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.22  E-value=7.2e-06  Score=75.75  Aligned_cols=75  Identities=8%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++|+|+|||+ |||+... +               .+.+++  +- ....+..++.  .    ......+.+|+|+|
T Consensus        31 ~~P~~ia~~pdG~-l~V~e~~-g---------------~I~~i~--~g-~~~~~~~~~v--~----~~g~~~p~gia~~p   84 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAERP-G---------------RIRLFR--EG-RLSTYAELSV--Y----HRGESGLLGLALHP   84 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEETT-T---------------EEEEEE--TT-EEEEEEECCC--C----CSTTCSEEEEEECT
T ss_pred             CCceEEEEcCCCe-EEEEeCC-C---------------eEEEEE--CC-CccEeecceE--e----ecCCCCceeEEECC
Confidence            5899999999998 8877541 1               222222  10 0011111110  0    01124688999999


Q ss_pred             C---CCEEEEEeCCC-----CcEEEEEec
Q psy11412        190 D---DRYLYTSNWMH-----GDIRQYDIR  210 (290)
Q Consensus       190 D---Gr~Lyvs~r~~-----~~V~v~Dv~  210 (290)
                      |   +++||+++...     +.|..|+..
T Consensus        85 df~~~g~lYv~~~~~~~~~~~~v~r~~~~  113 (352)
T 2ism_A           85 RFPQEPYVYAYRTVAEGGLRNQVVRLRHL  113 (352)
T ss_dssp             TTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence            9   89999998643     678888875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.22  E-value=4.8e-05  Score=70.81  Aligned_cols=64  Identities=16%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      ....+++  ++++|+++. .++.|.+||+.+   .+.+..+.....                          ....+.+.
T Consensus       364 ~v~~~~~--~~~~l~s~~-~dg~v~iwd~~~---~~~~~~~~~~~~--------------------------~~~~~~v~  411 (445)
T 2ovr_B          364 AVTCLQF--NKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLES--------------------------GGSGGVVW  411 (445)
T ss_dssp             CEEEEEE--CSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECTT--------------------------GGGTCEEE
T ss_pred             CEEEEEE--CCCEEEEEe-CCCeEEEEECCC---Cceeeeeecccc--------------------------CCCCceEE
Confidence            4555666  578988888 789999999864   344444421110                          00012578


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .++|+|+|..|++++.
T Consensus       412 ~~~~s~~~~~la~~~~  427 (445)
T 2ovr_B          412 RIRASNTKLVCAVGSR  427 (445)
T ss_dssp             EEEECSSEEEEEEECS
T ss_pred             EEEecCCEEEEEEccc
Confidence            9999999999999876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.18  E-value=1.9e-06  Score=78.08  Aligned_cols=48  Identities=15%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             EEEecCCCccCCCCCCCCCCCceE-EEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVT-DILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~-~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .++++..++.....   .-..... .+.+||||++|+.+.. .+.|.+||+..
T Consensus        63 ~~~d~~~~~~~~l~---~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~  111 (396)
T 3c5m_A           63 YLLNLETQQAVQLT---EGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLET  111 (396)
T ss_dssp             EEEETTTTEEEECC---CSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTT
T ss_pred             EEEECCCCcEEEee---cCCCCccccceECCCCCEEEEEEc-CCcEEEEECCC
Confidence            55666655543322   1111222 2678999999977664 46899999865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.11  E-value=5.1e-05  Score=70.42  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.+|+|.|||+ |||+....|+|.+++-.+ +....+..+.         .+               +   .....++.
T Consensus        33 ~P~~ia~~pdG~-llVter~~G~I~~v~~~~-g~~~~v~~~~---------~v---------------~---~~g~~Gll   83 (347)
T 3das_A           33 SPWGLAPLPGGD-LLVSSRDEATITRVDAKT-GRKTELGEVP---------GV---------------S---PSGEGGLL   83 (347)
T ss_dssp             SEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEECT---------TC---------------C---CBTTBSEE
T ss_pred             CceEEEEcCCCc-EEEEEecCCEEEEEECCC-CcEeeecccC---------ce---------------e---ecCCCCce
Confidence            799999999998 667776678998886433 2222221110         00               0   00126899


Q ss_pred             EEEEccC---CCEEEEE
Q psy11412        114 MFQLSLD---GKRIYVS  127 (290)
Q Consensus       114 ~vafsPd---G~~lYv~  127 (290)
                      +|+|+||   .++||+.
T Consensus        84 Gia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           84 GIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEECTTHHHHCEEEEE
T ss_pred             eeEeccccccCCEEEEE
Confidence            9999997   7889986

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.00  E-value=2e-05  Score=72.82  Aligned_cols=79  Identities=8%  Similarity=0.013  Sum_probs=44.2

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++|+|.|||++|||+.. .+               .+.+++. +-.....+..++...     ......+.+|+|+|
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~-~G---------------~i~~~~~-~g~~~~~~~~~~~v~-----~~g~~g~~gia~~p   75 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLR-GG---------------ELRHWQA-GKGLSAPLSGVPDVW-----AHGQGGLLDVVLAP   75 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEET-TT---------------EEEEEET-TTEECCCCBSCCCCC-----CSTTCSEEEEEECT
T ss_pred             CCcEEEEEcCCCCEEEEEeC-Cc---------------eEEEEeC-CCceeeEecCCcccc-----cCCCCCceeEEECC
Confidence            58999999999997887754 11               2221211 000000111111100     01123578899999


Q ss_pred             C---CCEEEEEeCC-------CCcEEEEEec
Q psy11412        190 D---DRYLYTSNWM-------HGDIRQYDIR  210 (290)
Q Consensus       190 D---Gr~Lyvs~r~-------~~~V~v~Dv~  210 (290)
                      |   +++||++...       .+.|..|+++
T Consensus        76 df~~~g~lYv~~~~~~~~g~~~~~v~r~~~~  106 (353)
T 2g8s_A           76 DFAQSRRIWLSYSEVGDDGKAGTAVGYGRLS  106 (353)
T ss_dssp             THHHHCEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEeCCCCCCCceeEEEEEEEC
Confidence            8   8899998643       3467777774

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.00  E-value=0.00023  Score=65.81  Aligned_cols=30  Identities=7%  Similarity=0.020  Sum_probs=23.5

Q ss_pred             CceeEEEE-------ccCCCEEEEEeCCCCcEEEEEec
Q psy11412        180 SMVTDILI-------SLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~-------SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..|.+++|       ..+| .||+++...+.|..+++.
T Consensus       259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEEC
T ss_pred             cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEEC
Confidence            46788999       4677 668888788899998885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.95  E-value=0.00019  Score=72.18  Aligned_cols=31  Identities=10%  Similarity=0.073  Sum_probs=23.4

Q ss_pred             ceeEEEEccCCCEEEEEe-CC---CCcEEEEEecC
Q psy11412        181 MVTDILISLDDRYLYTSN-WM---HGDIRQYDIRD  211 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~-r~---~~~V~v~Dv~d  211 (290)
                      ...++.+||||++|+.+. +.   .+.|.+||+..
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            356789999999887654 32   45899999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.93  E-value=0.00032  Score=62.20  Aligned_cols=181  Identities=12%  Similarity=0.085  Sum_probs=98.3

Q ss_pred             eEEEEEecCCCccCCCCCCCCCC--CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVP--AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~--~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      ..-.++|.+++++.-..   +..  ..+++++++|||+.|+ + . ++.|..||. +   .+.+-++..+.         
T Consensus        15 ~~v~~~d~~tG~~~w~~---~~~~~~~~~~~~~~pdG~ilv-s-~-~~~V~~~d~-~---G~~~W~~~~~~---------   75 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEY---PLEKGWECNSVAATKAGEILF-S-Y-SKGAKMITR-D---GRELWNIAAPA---------   75 (276)
T ss_dssp             SEEEEEETTTTEEEEEE---ECCTTCCCCEEEECTTSCEEE-E-C-BSEEEEECT-T---SCEEEEEECCT---------
T ss_pred             CEEEEEECCCCeEEEEe---CCCccCCCcCeEECCCCCEEE-e-C-CCCEEEECC-C---CCEEEEEcCCC---------
Confidence            34457787777766544   333  2689999999999887 3 2 568988886 3   34443332220         


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                                           +.....+.+.|||+++++.+....  .+..+.   .+|..+-.+...            
T Consensus        76 ---------------------~~~~~~~~~~~dG~~lv~~~~~~~--~v~~vd---~~Gk~l~~~~~~------------  117 (276)
T 3no2_A           76 ---------------------GCEMQTARILPDGNALVAWCGHPS--TILEVN---MKGEVLSKTEFE------------  117 (276)
T ss_dssp             ---------------------TCEEEEEEECTTSCEEEEEESTTE--EEEEEC---TTSCEEEEEEEC------------
T ss_pred             ---------------------CccccccEECCCCCEEEEecCCCC--EEEEEe---CCCCEEEEEecc------------
Confidence                                 123456789999999887543111  111111   123222111110            


Q ss_pred             ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCce-----ecCCCceEEecCCCCC
Q psy11412        168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK-----IQSDSGVTVIDDPELD  242 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~-----~~~~~~v~~~~~~~~~  242 (290)
                      . ...+    ....+..+++++||++|++.. .++.|..||..    .+.+-++..++.     ...++.+.+.+..   
T Consensus       118 ~-~~~~----~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~----G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~---  184 (276)
T 3no2_A          118 T-GIER----PHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN----GQLLNSVKLSGTPFSSAFLDNGDCLVACGD---  184 (276)
T ss_dssp             C-SCSS----GGGSCSCCEECTTSCEEEEET-TTTEEEEECTT----SCEEEEEECSSCCCEEEECTTSCEEEECBT---
T ss_pred             C-CCCc----ccccccCceECCCCCEEEEec-CCCEEEEECCC----CCEEEEEECCCCccceeEcCCCCEEEEeCC---
Confidence            0 0000    001344578899999876554 78899999763    334444433321     1233333333321   


Q ss_pred             CCCCcceeecccccCCcceEEEccC-CCEEEEEc
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLD-GKRIYVSS  275 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPD-G~~L~Van  275 (290)
                                     .-+-++|+|+ |+.++-..
T Consensus       185 ---------------~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          185 ---------------AHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             ---------------TSEEEEECTTTCCEEEEEE
T ss_pred             ---------------CCeEEEEeCcCCcEEEEec
Confidence                           2256788888 88887764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.84  E-value=0.0002  Score=63.66  Aligned_cols=114  Identities=11%  Similarity=0.085  Sum_probs=70.2

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..+.+++++|++++||+++.-               ...+..++..    ...++.++.        .+...+.+|++.+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~---------------~~~I~~ld~~----g~v~~~i~l--------~g~~D~EGIa~~~   79 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINK---------------PAAIVEMTTN----GDLIRTIPL--------DFVKDLETIEYIG   79 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEET---------------TEEEEEEETT----CCEEEEEEC--------SSCSSEEEEEECS
T ss_pred             cCcceeEEeCCCCEEEEEECC---------------CCeEEEEeCC----CCEEEEEec--------CCCCChHHeEEeC
Confidence            468889999999999986541               1222222221    122222221        1124577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      +|+ +|++++.++.+.++++.+......+..+..+..                ..|         ...+..+++++|+++
T Consensus        80 ~g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~----------------~~~---------~N~g~EGLA~d~~~~  133 (255)
T 3qqz_A           80 DNQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQ----------------ESP---------TNCGFEGLAYSRQDH  133 (255)
T ss_dssp             TTE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCS----------------SCC---------CSSCCEEEEEETTTT
T ss_pred             CCE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccc----------------ccc---------ccCCcceEEEeCCCC
Confidence            997 467777889999999965433233444432110                000         012579999999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +||++++
T Consensus       134 ~L~va~E  140 (255)
T 3qqz_A          134 TFWFFKE  140 (255)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.83  E-value=0.0003  Score=70.05  Aligned_cols=31  Identities=10%  Similarity=0.084  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC----CeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMH----GDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~----g~V~v~dv~d   64 (290)
                      ...++++||||++|+.+...+    .+|++||+..
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            366899999999987653322    4799999965

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.80  E-value=0.00081  Score=67.12  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=22.7

Q ss_pred             eeEEEEccCCCEEEEEeC-C--CCcEEEEEecCC
Q psy11412        182 VTDILISLDDRYLYTSNW-M--HGDIRQYDIRDT  212 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r-~--~~~V~v~Dv~d~  212 (290)
                      ..++.+||||++|+++.. +  .+.|.++|+.++
T Consensus       236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            456889999999976542 2  258999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.80  E-value=0.00085  Score=62.26  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ....+.+  +|++|+++. .++.|.+||+..
T Consensus       298 ~v~~~~~--~~~~l~~g~-~dg~i~iwd~~~  325 (435)
T 1p22_A          298 GIACLQY--RDRLVVSGS-SDNTIRLWDIEC  325 (435)
T ss_dssp             CEEEEEE--ETTEEEEEE-TTSCEEEEETTT
T ss_pred             cEEEEEe--CCCEEEEEe-CCCeEEEEECCC
Confidence            3445555  688988888 789999999954

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.78  E-value=0.003  Score=59.17  Aligned_cols=178  Identities=8%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             ceEEEEEc---CC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCC-ceEEecCCCCcCCCCcceeec
Q psy11412         34 MVTDILIS---LD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS-GVTVIDDPELDKQPDPVIIKG  105 (290)
Q Consensus        34 ~p~~va~S---pD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~-~~~v~~~~~~~~~~~~~~~~~  105 (290)
                      +...++++   |+    +.++|+++.+.+.|-|||+.+...-+++     +....+.. ....++-..            
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-----~~~~~pd~~~~~~i~G~~------------  215 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT-----HPTFKAERPTKFDYGGKE------------  215 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-----CGGGSCCSCEEEEETTEE------------
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-----cCCCccccCcceEECCEE------------
Confidence            56788888   33    7899999999999999999764322222     11111110 000000000            


Q ss_pred             cccCCCceEEEEccC----CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcc-ccCCCC
Q psy11412        106 RRFTGSSQMFQLSLD----GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSW-KYPARS  180 (290)
Q Consensus       106 ~~~g~gPr~vafsPd----G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~-~~~~~~  180 (290)
                      .....|.-+|++||+    +++||...-.+               ..+-.+.+..+... .+    ...+..+ ..+...
T Consensus       216 ~~~~~Gi~gIaLsp~~~~~~~~LYf~plss---------------~~ly~V~T~~L~~~-~~----~~~v~~~G~kg~~s  275 (381)
T 3q6k_A          216 YEFKAGIFGITLGDRDSEGNRPAYYLAGSA---------------IKVYSVNTKELKQK-GG----KLNPELLGNRGKYN  275 (381)
T ss_dssp             EEECCCEEEEEECCCCTTSCCEEEEEESSC---------------SEEEEEEHHHHSST-TC----CCCCEEEEECCTTC
T ss_pred             eEeccCceEEEecCCcCCCCeEEEEEECCC---------------CcEEEEEHHHhhCc-ch----hhceEEeeecCCCC
Confidence            001258899999999    99999864311               11111111000000 00    0001000 010013


Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ...++++++....||.+.-.++.|..|+... +-.+..+..+..             |. +       .        .+|
T Consensus       276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-------------d~-~-------l--------~~p  326 (381)
T 3q6k_A          276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-------------SS-R-------F--------VFG  326 (381)
T ss_dssp             CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-------------CT-T-------C--------CSE
T ss_pred             CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-------------CC-C-------c--------ccc
Confidence            4456778643447899988899999998753 211111121111             11 0       0        279


Q ss_pred             ceEEEccCCCEEEEEcCC
Q psy11412        260 QMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~~  277 (290)
                      ..|.+.+||..-+.+|++
T Consensus       327 d~~~i~~~g~Lwv~sn~l  344 (381)
T 3q6k_A          327 TDISVDSKGGLWFMSNGF  344 (381)
T ss_dssp             EEEEECTTSCEEEEECSC
T ss_pred             CeEEECCCCeEEEEECcc
Confidence            999999999866667773

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.78  E-value=0.0012  Score=61.32  Aligned_cols=164  Identities=16%  Similarity=0.181  Sum_probs=88.4

Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412         39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  118 (290)
Q Consensus        39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs  118 (290)
                      ++++||++|+++.. +|+|++||+.+.   +.+..+. ++                              ......++| 
T Consensus       138 ~~~~d~~~l~~g~~-dg~i~iwd~~~~---~~~~~~~-~h------------------------------~~~v~~l~~-  181 (435)
T 1p22_A          138 CLQYDDQKIVSGLR-DNTIKIWDKNTL---ECKRILT-GH------------------------------TGSVLCLQY-  181 (435)
T ss_dssp             EEECCSSEEEEEES-SSCEEEEESSSC---CEEEEEC-CC------------------------------SSCEEEEEC-
T ss_pred             EEEECCCEEEEEeC-CCeEEEEeCCCC---eEEEEEc-CC------------------------------CCcEEEEEE-
Confidence            45669999988875 899999998652   2322221 11                              134555555 


Q ss_pred             cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEe
Q psy11412        119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSN  198 (290)
Q Consensus       119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~  198 (290)
                       ++++|++++.               ++ .+.+++...   .+.+..+.     +    .......++++  +..|+++.
T Consensus       182 -~~~~l~sg~~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~l~~~--~~~l~s~s  230 (435)
T 1p22_A          182 -DERVIITGSS---------------DS-TVRVWDVNT---GEMLNTLI-----H----HCEAVLHLRFN--NGMMVTCS  230 (435)
T ss_dssp             -CSSEEEEEET---------------TS-CEEEEESSS---CCEEEEEC-----C----CCSCEEEEECC--TTEEEEEE
T ss_pred             -CCCEEEEEcC---------------CC-eEEEEECCC---CcEEEEEc-----C----CCCcEEEEEEc--CCEEEEee
Confidence             8898888765               22 333344322   11121111     0    12345667775  45777777


Q ss_pred             CCCCcEEEEEecCCCCceE----------eeEEee-Ccee---cCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        199 WMHGDIRQYDIRDTAHPVL----------VGQIFL-GGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       199 r~~~~V~v~Dv~d~~~~~~----------v~~i~~-Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                       .++.|.+||+........          +..+.. +..+   ..+++|.++|.....  + ...+.+..  +...  .+
T Consensus       231 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~-~~~~~~~~--~~v~--~~  302 (435)
T 1p22_A          231 -KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--F-VRTLNGHK--RGIA--CL  302 (435)
T ss_dssp             -TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC--E-EEEEECCS--SCEE--EE
T ss_pred             -CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc--E-EEEEcCCC--CcEE--EE
Confidence             689999999965332211          111111 1111   467889999865421  0 00111111  2334  44


Q ss_pred             ccCCCEEEEEcCC
Q psy11412        265 SLDGKRIYVSSSL  277 (290)
Q Consensus       265 sPDG~~L~Van~~  277 (290)
                      ..+|++|++++.-
T Consensus       303 ~~~~~~l~~g~~d  315 (435)
T 1p22_A          303 QYRDRLVVSGSSD  315 (435)
T ss_dssp             EEETTEEEEEETT
T ss_pred             EeCCCEEEEEeCC
Confidence            5599998888753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.75  E-value=0.00031  Score=70.05  Aligned_cols=54  Identities=4%  Similarity=0.036  Sum_probs=35.5

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCC-ceEEEEEcCCCCEEEEEeCCCC---------------eEEEEEcCC
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPA-MVTDILISLDDRYLYTSNWMHG---------------DIRQYDIRD   64 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~p~~va~SpDGr~Lyva~~~~g---------------~V~v~dv~d   64 (290)
                      .+|..-.+.|+..++.....    +.. ...++++||||++||.+.....               .|.+|++..
T Consensus       148 ~~~~~i~v~d~~tg~~~~~~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t  217 (710)
T 2xdw_A          148 SDWVTIKFMKVDGAKELPDV----LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT  217 (710)
T ss_dssp             CSCEEEEEEETTTTEEEEEE----EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS
T ss_pred             CceEEEEEEECCCCCCCccc----ccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC
Confidence            35667788888877654321    111 2356899999999988865322               288888754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.71  E-value=0.0018  Score=57.29  Aligned_cols=168  Identities=9%  Similarity=0.006  Sum_probs=90.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .++.+.++|||++|++.....+.|..++.    ..+.+.++......                 ..+        -..++
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~----~Gk~l~~~~~~~~~-----------------~~~--------~~~~~  128 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM----KGEVLSKTEFETGI-----------------ERP--------HAQFR  128 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT----TSCEEEEEEECCSC-----------------SSG--------GGSCS
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC----CCCEEEEEeccCCC-----------------Ccc--------ccccc
Confidence            56788999999999876543566666653    23444444332100                 000        02567


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .+++.++|+++++...                .+.+..++..    .+.          .|.+..+..+..+.+.++|+.
T Consensus       129 ~v~~~~~G~~lv~~~~----------------~~~v~~~d~~----G~~----------~w~~~~~~~~~~~~~~~~g~~  178 (276)
T 3no2_A          129 QINKNKKGNYLVPLFA----------------TSEVREIAPN----GQL----------LNSVKLSGTPFSSAFLDNGDC  178 (276)
T ss_dssp             CCEECTTSCEEEEETT----------------TTEEEEECTT----SCE----------EEEEECSSCCCEEEECTTSCE
T ss_pred             CceECCCCCEEEEecC----------------CCEEEEECCC----CCE----------EEEEECCCCccceeEcCCCCE
Confidence            7899999998876543                1122111110    000          122222234566888999998


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEe------------eCceecCCCceEEecCCCCCCCCCcceeecccc----cC
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIF------------LGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF----TG  257 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~------------~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~  257 (290)
                      |++.. .++.|..||..+   .+.+-++.            .+..+..++.+.|.+-.            |.-.    .+
T Consensus       179 ~v~~~-~~~~v~~~d~~t---G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~------------g~~~~~~~~~  242 (276)
T 3no2_A          179 LVACG-DAHCFVQLNLES---NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ------------GHDREAGKGK  242 (276)
T ss_dssp             EEECB-TTSEEEEECTTT---CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC------------TTCTTGGGSC
T ss_pred             EEEeC-CCCeEEEEeCcC---CcEEEEecCCCCCCccccccccceEcCCCCEEEEecc------------CccccccccC
Confidence            77665 566788886532   33333332            12222445555554411            1000    02


Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      .++.+.|+|+|+.++--+.
T Consensus       243 ~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          243 HPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             CCSEEEECTTSBEEEEECC
T ss_pred             CceEEEECCCCCEEEEecC
Confidence            5688999999998887544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.64  E-value=0.003  Score=58.48  Aligned_cols=93  Identities=16%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC-------CceEeeEEeeCce-e---cCCCceEEecCCCCCCCCCcce
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------HPVLVGQIFLGGK-I---QSDSGVTVIDDPELDKQPDPVI  249 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~-------~~~~v~~i~~Gg~-~---~~~~~v~~~~~~~~~~~~~~~~  249 (290)
                      ....+.+  ||++|+++. .++.|.+||+....       +...+..+...+. +   ..+++|.++|......   ...
T Consensus       241 ~v~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~  314 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGA-YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC---IHT  314 (445)
T ss_dssp             CEEEEEE--CSSCEEEEE-TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE---EEE
T ss_pred             cEEEEEE--CCCEEEEEc-CCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE---EEE
Confidence            3455555  899998888 68999999985421       0011111111111 1   5678899998654210   001


Q ss_pred             eecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        250 IKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       250 ~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      +.+.    ...-..++++|++|++++.  .+.-||-
T Consensus       315 ~~~~----~~~v~~~~~~~~~l~~~~~dg~i~vwd~  346 (445)
T 2ovr_B          315 LTGH----QSLTSGMELKDNILVSGNADSTVKIWDI  346 (445)
T ss_dssp             ECCC----CSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EcCC----cccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence            1111    2345577889999999877  3444543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.60  E-value=0.00069  Score=67.39  Aligned_cols=29  Identities=14%  Similarity=0.046  Sum_probs=20.7

Q ss_pred             eEEEEccCCCEEEEEeCCC------------CcEEEEEecC
Q psy11412        183 TDILISLDDRYLYTSNWMH------------GDIRQYDIRD  211 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~------------~~V~v~Dv~d  211 (290)
                      ..+++||||+.||.+....            ..|.+|++..
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t  211 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT  211 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence            4689999999887765322            2388888853

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.55  E-value=0.0013  Score=63.08  Aligned_cols=28  Identities=18%  Similarity=0.100  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCCeEEEEEc
Q psy11412         34 MVTDILISLDDR-YLYTSNWMHGDIRQYDI   62 (290)
Q Consensus        34 ~p~~va~SpDGr-~Lyva~~~~g~V~v~dv   62 (290)
                      .|.+|+|.|||+ +|||+.. .|.|++++-
T Consensus        15 ~P~~~a~~pdG~~rl~V~er-~G~i~~~~~   43 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEK-EGYVKILTP   43 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEET-TTEEEEECT
T ss_pred             CceEEEECCCCCeEEEEEeC-CceEEEEeC
Confidence            799999999996 7888876 689998864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.51  E-value=0.00079  Score=62.38  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=22.3

Q ss_pred             CceeEEEEccC---CCEEEEEe--CCCCcEEEEEec
Q psy11412        180 SMVTDILISLD---DRYLYTSN--WMHGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpD---Gr~Lyvs~--r~~~~V~v~Dv~  210 (290)
                      ..+.+|+|+||   .++||++-  ...+.|.-|...
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~  115 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD  115 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence            46789999997   67889852  235677777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.49  E-value=0.0017  Score=59.81  Aligned_cols=30  Identities=10%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      .+.+|+++|||+.|++..- .+.+..||+..
T Consensus       186 G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          186 GYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             SCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             CcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            4678999999999999985 89999999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.43  E-value=0.0021  Score=64.98  Aligned_cols=30  Identities=13%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             eeEEEEccCCCEEEEEeC--CCCcEEEEEecC
Q psy11412        182 VTDILISLDDRYLYTSNW--MHGDIRQYDIRD  211 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d  211 (290)
                      ..++.+||||++|+.+..  ....|.++|+.+
T Consensus       273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            456889999999886543  245688888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.39  E-value=0.00088  Score=64.07  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CceeEEEEccC---CCEEEEEeCC------------CCcEEEEEec
Q psy11412        180 SMVTDILISLD---DRYLYTSNWM------------HGDIRQYDIR  210 (290)
Q Consensus       180 ~~~~~i~~SpD---Gr~Lyvs~r~------------~~~V~v~Dv~  210 (290)
                      ..+.+|+|+||   +++||++...            .+.|..|+.+
T Consensus        77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~  122 (454)
T 1cru_A           77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYN  122 (454)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEE
T ss_pred             CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEEC
Confidence            45678999998   8899998732            2457777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.28  E-value=0.0034  Score=57.75  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      +|.++++++.+.++|+++...++|..|+..
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~   43 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK   43 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCC
Confidence            789999999999999999889999999875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.97  E-value=0.0053  Score=58.92  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=16.9

Q ss_pred             CCceEEEEccCCC-EEEEEcC
Q psy11412        110 GSSQMFQLSLDGK-RIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~-~lYv~ne  129 (290)
                      ..|++|+|.|||+ +|||+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er   34 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEK   34 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEET
T ss_pred             CCceEEEECCCCCeEEEEEeC
Confidence            5899999999996 7888754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.92  E-value=0.012  Score=58.70  Aligned_cols=53  Identities=9%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             CceeEEEEEecCCCccCCCCCCCCCCCc-eEEEEEcCCCCEEEEEeCCC------------CeEEEEEcCC
Q psy11412          7 GTYKADKVIDIPAKQVQGYPGGDKVPAM-VTDILISLDDRYLYTSNWMH------------GDIRQYDIRD   64 (290)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~va~SpDGr~Lyva~~~~------------g~V~v~dv~d   64 (290)
                      .+|..-.+.|+..++....    .+... ..++++| ||+.||.+....            ..|.+|++..
T Consensus       152 ~~~~~i~v~dl~tg~~~~~----~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt  217 (693)
T 3iuj_A          152 SDWREIHLMDVESKQPLET----PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGT  217 (693)
T ss_dssp             CCEEEEEEEETTTCSEEEE----EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTS
T ss_pred             CceEEEEEEECCCCCCCcc----ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCC
Confidence            4578888999988764321    12222 2467899 999998876532            2377777643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.88  E-value=0.016  Score=54.33  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=27.0

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA   66 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~   66 (290)
                      +++. +++++|  ||++|+++  .++.|++||+....
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~--~~~~l~v~dv~sl~  117 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS--TRNALYSLDLEELS  117 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE--ESSEEEEEESSSTT
T ss_pred             eCCC-eeEEEE--CCCEEEEE--cCCcEEEEEchhhh
Confidence            4677 999999  99999999  35899999997643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.79  E-value=0.0041  Score=58.35  Aligned_cols=29  Identities=7%  Similarity=0.008  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ....++++++.+.+++++.  +.+.+|++.+
T Consensus        39 ~~nlLais~~~gll~a~~~--~~l~v~~~~~   67 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG--SKAVVGELQL   67 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET--TEEEEEEHHH
T ss_pred             cccEEEEcCCCCEEEEeCC--CEEEEEEhhH
Confidence            3567999999999998875  4788899764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.64  E-value=0.028  Score=56.23  Aligned_cols=31  Identities=10%  Similarity=0.100  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCC----CCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWM----HGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~----~g~V~v~dv~d   64 (290)
                      ...++.+||||++|+.+...    ...|.+||+..
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            46789999999998877532    34899999865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.50  E-value=0.018  Score=57.62  Aligned_cols=38  Identities=8%  Similarity=0.099  Sum_probs=28.2

Q ss_pred             EEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        184 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      +..++.+|..||++. .++.+.+||..+   .+.+-++.++.
T Consensus       481 ~g~~~~~g~~v~~g~-~dg~l~a~D~~t---G~~lw~~~~~~  518 (677)
T 1kb0_A          481 GGTLTTAGNVVFQGT-ADGRLVAYHAAT---GEKLWEAPTGT  518 (677)
T ss_dssp             CCEEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred             CcceEeCCCEEEEEC-CCCcEEEEECCC---CceeeeeeCCC
Confidence            345788899999986 789999999853   45666666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.40  E-value=0.015  Score=52.46  Aligned_cols=26  Identities=31%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .+++++|+.||-++.+..+|.+.++.
T Consensus       150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~  175 (302)
T 3s25_A          150 FTCNTSDRYFYYNNPKNGQLYRYDTA  175 (302)
T ss_dssp             CCSEEETTEEEEECTTTCCEEEEETT
T ss_pred             eEeeEECCEEEEEeCCCceEEEEECC
Confidence            34689999999887677889988874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.65  E-value=0.15  Score=49.75  Aligned_cols=35  Identities=9%  Similarity=0.174  Sum_probs=23.9

Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      +...|..||+++ .++.|.+||..+   .+.+-++.++.
T Consensus       471 ~~t~gg~v~~g~-~dg~l~a~D~~t---G~~lw~~~~~~  505 (571)
T 2ad6_A          471 LYTKGGLVWYAT-LDGYLKALDNKD---GKELWNFKMPS  505 (571)
T ss_dssp             EEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred             EEECCCEEEEEc-CCCeEEEEECCC---CCEEEEEeCCC
Confidence            344567788876 678999998743   45666666654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.61  E-value=0.12  Score=46.32  Aligned_cols=25  Identities=0%  Similarity=-0.111  Sum_probs=18.5

Q ss_pred             EEccCCCEEEEE-eCCCCcEEEEEec
Q psy11412        186 LISLDDRYLYTS-NWMHGDIRQYDIR  210 (290)
Q Consensus       186 ~~SpDGr~Lyvs-~r~~~~V~v~Dv~  210 (290)
                      .|+|+|++||-+ .+..+.|...+++
T Consensus       229 ~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          229 HYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             EEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             eEEECCCEEEEEECCCCcEEEEEECC
Confidence            489999999976 4445677777763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.17  E-value=0.23  Score=49.42  Aligned_cols=35  Identities=9%  Similarity=0.074  Sum_probs=22.7

Q ss_pred             EEEccCC---CEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        185 ILISLDD---RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       185 i~~SpDG---r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      +.+..||   +.||+.+ .++.|.++|..+   .+++..++.
T Consensus       318 ~~~~~dG~~~~~l~~~~-~~G~l~~lD~~t---G~~l~~~~~  355 (677)
T 1kb0_A          318 ADIKIAGKPRKVILHAP-KNGFFFVLDRTN---GKFISAKNF  355 (677)
T ss_dssp             EEEEETTEEEEEEEECC-TTSEEEEEETTT---CCEEEEEES
T ss_pred             EecccCCcEeeEEEEEC-CCCEEEEEECCC---CCEeccccc
Confidence            3444589   5677777 588999998753   445554443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.17  E-value=0.081  Score=53.31  Aligned_cols=16  Identities=13%  Similarity=0.237  Sum_probs=12.7

Q ss_pred             ceEEEccCCCEEEEEc
Q psy11412        260 QMFQLSLDGKRIYVSS  275 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van  275 (290)
                      ..+.+||||++|+...
T Consensus       274 ~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          274 AFMYKAADTNTLCIGS  289 (751)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            3578999999988764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=94.52  E-value=0.083  Score=51.96  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=17.8

Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      .|.+++||||+++|||+.+
T Consensus       532 EpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          532 EVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             cccCCEECCCCCEEEEEEe
Confidence            5899999999999999987

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=93.65  E-value=0.21  Score=49.10  Aligned_cols=21  Identities=19%  Similarity=0.200  Sum_probs=18.0

Q ss_pred             CCCceEEEEccCCCEEEEEcC
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~ne  129 (290)
                      +..|.+++||||+++|||+-.
T Consensus       530 ~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          530 GCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             TCEEEEEEECTTSSEEEEEEE
T ss_pred             CccccCCEECCCCCEEEEEEe
Confidence            367899999999999999754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=92.50  E-value=1.8  Score=43.06  Aligned_cols=35  Identities=9%  Similarity=0.107  Sum_probs=25.6

Q ss_pred             EEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        186 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                      .++..|..||+++ .++.|.+||..+   .+.+-+..++
T Consensus       481 ~~~tagglvf~gt-~dg~l~a~D~~t---G~~lw~~~~~  515 (689)
T 1yiq_A          481 TLSTAGNLVFEGS-ADGRVIAYAADT---GEKLWEQPAA  515 (689)
T ss_dssp             EEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECS
T ss_pred             cceECCCEEEEEC-CCCcEEEEECCC---CccceeeeCC
Confidence            5677888889887 789999999853   4555555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.08  E-value=5.3  Score=38.66  Aligned_cols=17  Identities=6%  Similarity=0.198  Sum_probs=14.9

Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ..++++|++++||+.+.
T Consensus       389 ~~~a~dp~~g~~yv~~~  405 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLN  405 (571)
T ss_dssp             CBCEEETTTTEEEEEEE
T ss_pred             CCceECCCCCEEEEEch
Confidence            67999999999999853

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=90.20  E-value=0.89  Score=44.81  Aligned_cols=19  Identities=21%  Similarity=0.249  Sum_probs=16.5

Q ss_pred             CCCceEEEEccCCCEEEEE
Q psy11412        109 TGSSQMFQLSLDGKRIYVS  127 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~  127 (290)
                      ++...+++|+|||++|||.
T Consensus       530 gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          530 GCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             TCEEEEEEECTTSSEEEEE
T ss_pred             CccCcCeeECCCCCEEEEE
Confidence            4677889999999999985

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.73  E-value=0.86  Score=44.93  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=16.3

Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      -.-+++|+|||++|||+-+
T Consensus       532 E~TG~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          532 EVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             cCcCeeECCCCCEEEEEEE
Confidence            4567999999999999866

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.57  E-value=4.3  Score=35.17  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=17.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYD   61 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~d   61 (290)
                      ....++|+|||+ ||+.  .+|.+.-.+
T Consensus        42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~   66 (236)
T 1tl2_A           42 NFKFLFLSPGGE-LYGV--LNDKIYKGT   66 (236)
T ss_dssp             TCSEEEECTTSC-EEEE--ETTEEEEES
T ss_pred             cceeEEECCCcc-EEEE--eCCeEEEEC
Confidence            345899999888 7877  357755444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=88.80  E-value=2.2  Score=42.13  Aligned_cols=37  Identities=11%  Similarity=0.124  Sum_probs=26.1

Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      ..++..|..||+++ .++.|.+||..+   .+.+.++.++.
T Consensus       463 ~~~~t~gg~vf~g~-~dg~l~a~d~~t---G~~l~~~~~~~  499 (668)
T 1kv9_A          463 GTLSTAGNLVFQGT-AAGQMHAYSADK---GEALWQFEAQS  499 (668)
T ss_dssp             CEEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred             ceeEeCCCEEEEEC-Ccccchhhhhhc---ChhheEecCCC
Confidence            34566788899887 689999998753   45566665543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=86.71  E-value=22  Score=33.69  Aligned_cols=171  Identities=12%  Similarity=0.117  Sum_probs=90.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..........+|+.|+++.  ++.||.-++.+...=+.+   .+..      +                    . .-..+
T Consensus        21 ~s~R~~~~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L---~~~~------~--------------------i-~f~~i   68 (452)
T 3pbp_A           21 QSPRYIFSSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSL---NFSR------H--------------------L-VLDDT   68 (452)
T ss_dssp             -CCEEEEEETTTTEEEEEE--TTEEEEEETTTCSSCEEE---ECTT------T--------------------C-CCCTT
T ss_pred             CCCcEEEEEcCCCEEEEEE--CCEEEEEECCCCCcceEE---ecCc------c--------------------c-ccCce
Confidence            3555666778899998886  478998888753211121   1110      0                    0 01357


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccc-cCCCc-ee-ecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDL-VKTDA-AF-GSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~-~~~g~-~~-~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      +++.+||+|++|++.++  .++.+...|+. ....+ .+ ..++...+         ..+....  . .......+.++|
T Consensus        69 ~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty---------~l~~~~~--~-~~s~I~qVlWHP  134 (452)
T 3pbp_A           69 FHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHY---------SIDEEEV--G-PKSSIKKVLFHP  134 (452)
T ss_dssp             CEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEE---------EGGGCC-----CCCCEEEEEECT
T ss_pred             eEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccccccceeEE---------EcCCccc--C-CCCceeEEEecc
Confidence            88999999999999977  44555444421 00000 00 01111110         0000000  0 012455677777


Q ss_pred             C---CCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc
Q psy11412        190 D---DRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  265 (290)
Q Consensus       190 D---Gr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s  265 (290)
                      -   |..|.+=. .++.|++||+.. ...|..+.. .. +.+.-       +...                ..+.+++|+
T Consensus       135 l~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k-~~-~~fg~-------d~~~----------------~ev~S~~Fg  188 (452)
T 3pbp_A          135 KSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNK-PN-NSFGL-------DARV----------------NDITDLEFS  188 (452)
T ss_dssp             TBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESC-CC-SEEES-------CSSC----------------CCEEEEEEC
T ss_pred             ccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhc-cc-cccCC-------Cccc----------------ceEEEEEEc
Confidence            3   55677666 688999999964 122221110 00 00000       0000                147889999


Q ss_pred             cCCCEEEEEc
Q psy11412        266 LDGKRIYVSS  275 (290)
Q Consensus       266 PDG~~L~Van  275 (290)
                      .+|=+||++.
T Consensus       189 ~~~lTLYvl~  198 (452)
T 3pbp_A          189 KDGLTLYCLN  198 (452)
T ss_dssp             TTSSCEEEEE
T ss_pred             CCCcEEEEEe
Confidence            9999999976

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=86.08  E-value=0.27  Score=44.85  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             CCCEEEEEeCCCCeEEEEEcCC
Q psy11412         43 DDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        43 DGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ++.+||+++. +|.|.+||..+
T Consensus         8 ~~~~v~~gs~-dg~v~a~d~~t   28 (369)
T 2hz6_A            8 PETLLFVSTL-DGSLHAVSKRT   28 (369)
T ss_dssp             CTTEEEEEET-TSEEEEEETTT
T ss_pred             eCCEEEEEcC-CCEEEEEECCC
Confidence            6889999885 78999999865

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=86.06  E-value=5.1  Score=34.32  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIR   63 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~   63 (290)
                      ...++++++|+ ||++.. ++.|..||..
T Consensus       139 ~~~~~~~~~g~-l~vgt~-~~~l~~~d~~  165 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSN-DNYLYAINPD  165 (330)
T ss_dssp             CSCCEECTTSC-EEEECT-TSEEEEECTT
T ss_pred             eeeeEEcCCCE-EEEEcC-CCEEEEECCC
Confidence            34446788888 555664 4678888764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.76  E-value=2.8  Score=38.90  Aligned_cols=77  Identities=12%  Similarity=0.247  Sum_probs=47.7

Q ss_pred             CceeEEEEc---cC----CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCC-ceEEecCCCCCCCCCcceee
Q psy11412        180 SMVTDILIS---LD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS-GVTVIDDPELDKQPDPVIIK  251 (290)
Q Consensus       180 ~~~~~i~~S---pD----Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~-~v~~~~~~~~~~~~~~~~~~  251 (290)
                      ....+|++.   |+    +.++|+++-+...|.|+|+.+....++. .    ..+..+. ....+              .
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-~----~~~~pd~~~~~~i--------------~  212 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT-H----PTFKAERPTKFDY--------------G  212 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-C----GGGSCCSCEEEEE--------------T
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-c----CCCccccCcceEE--------------C
Confidence            466788888   33    6899999988899999999653222222 1    1111111 11111              1


Q ss_pred             ccc--ccCCcceEEEccC----CCEEEEEc
Q psy11412        252 GRR--FTGSSQMFQLSLD----GKRIYVSS  275 (290)
Q Consensus       252 ~~~--~~~~P~~~a~sPD----G~~L~Van  275 (290)
                      |..  +..+..+|+|||+    +++||-.-
T Consensus       213 G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          213 GKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             TEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             CEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence            222  1347899999999    89999763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.98  E-value=2.4  Score=36.78  Aligned_cols=18  Identities=11%  Similarity=0.087  Sum_probs=14.1

Q ss_pred             cceEEEccCCCEEEEEcC
Q psy11412        259 SQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van~  276 (290)
                      -..+.|+|+|..-+|++.
T Consensus       137 ~~~lff~p~G~Lyav~dg  154 (236)
T 1tl2_A          137 FKFLFFHPNGYLYAVHGQ  154 (236)
T ss_dssp             EEEEEECTTSCEEEEETT
T ss_pred             eEEEEECCCceEEEEeCC
Confidence            477999999997777743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=82.77  E-value=24  Score=34.69  Aligned_cols=17  Identities=6%  Similarity=0.141  Sum_probs=14.3

Q ss_pred             cceEEEccCCCEEEEEc
Q psy11412        259 SQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       259 P~~~a~sPDG~~L~Van  275 (290)
                      ...++++|+.+++||..
T Consensus       383 w~~~a~dp~~g~~yv~~  399 (668)
T 1kv9_A          383 WHSMSFNPGTGLVYIPY  399 (668)
T ss_dssp             SSCCEEETTTTEEEEEE
T ss_pred             CCcceECCCCCEEEEec
Confidence            45699999999999963

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=82.45  E-value=18  Score=35.09  Aligned_cols=33  Identities=12%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      ..|..+|+++ .++.+..||..+   .+++-+..++.
T Consensus       495 tagglvf~g~-~dg~l~A~D~~t---G~~lW~~~~~~  527 (582)
T 1flg_A          495 TAGNLVFTGT-GDGYFKAFDAKS---GKELWKFQTGS  527 (582)
T ss_dssp             ETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred             eCCCEEEEEC-CCCcEEEEECCC---CCEEEEecCCC
Confidence            3566788877 688999998743   45555555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=81.95  E-value=5.6  Score=35.23  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=19.8

Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      +..||+.. .++.|.+||..+   .+.+.+...
T Consensus       318 ~~~l~v~~-~~g~l~~~d~~t---G~~~~~~~~  346 (376)
T 3q7m_A          318 NGNLVVGD-SEGYLHWINVED---GRFVAQQKV  346 (376)
T ss_dssp             TTEEEEEC-TTSEEEEEETTT---CCEEEEEEC
T ss_pred             CCEEEEEe-CCCeEEEEECCC---CcEEEEEec
Confidence            56889888 577899998753   345555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.63
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.55
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.5
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.49
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.39
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.34
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.26
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.25
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.23
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.21
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.19
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	99.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	99.15
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.1
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.06
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.86
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.85
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.85
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.8
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.67
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.67
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.66
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.62
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.62
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.61
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.49
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.45
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.41
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.38
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.37
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.35
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.34
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.14
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.83
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.71
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.68
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.62
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.46
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.2
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.53
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.86

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.89  E-value=3.3e-22  Score=184.70  Aligned_cols=177  Identities=10%  Similarity=0.125  Sum_probs=116.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ..+||+++|+|||++||+++.+.++|.+|++...+.......+..                             ...|.+
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~-----------------------------~~~g~g  194 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA-----------------------------PDPGDH  194 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----------------------------SSTTCC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee-----------------------------cCCCCc
Confidence            348999999999999999999999999999865444433332211                             113589


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |||++|||||+++|+++|+.+++.++.+..  .....+......+.....    .+......  ......+++|+|||||
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~i~~spdG  266 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP--ATHMPVYTHHSFPLIPPG----IPDRDPET--GKGLYRADVCALTFSG  266 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECT--TTCCEEEEEEEEESSCTT----CCCBCTTT--SSBSEEEEEEEECTTS
T ss_pred             eEEEEECCCCceEEEeccCCCEEEEEEecC--CCceEEEEeeeecccccc----cccccccc--ccccCCccceEECCCC
Confidence            999999999999999999988877765432  011111111111100000    00000000  1112368899999999


Q ss_pred             CEEEEEeCCCCc-----EEEEEecCCCCceE---eeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412        192 RYLYTSNWMHGD-----IRQYDIRDTAHPVL---VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  263 (290)
Q Consensus       192 r~Lyvs~r~~~~-----V~v~Dv~d~~~~~~---v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a  263 (290)
                      |+||++||+++.     |..|++.+.+....   +...++.                               |++|++|+
T Consensus       267 ~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-------------------------------G~~p~~i~  315 (365)
T d1jofa_         267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-------------------------------GGHSNAVS  315 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-------------------------------CTTCCCEE
T ss_pred             CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-------------------------------CCCccEEE
Confidence            999999998876     88898865433221   1111111                               24899999


Q ss_pred             Ecc-CCCEEEEEcC
Q psy11412        264 LSL-DGKRIYVSSS  276 (290)
Q Consensus       264 ~sP-DG~~L~Van~  276 (290)
                      |+| ||++|||||+
T Consensus       316 ~~p~~G~~l~va~~  329 (365)
T d1jofa_         316 PCPWSDEWMAITDD  329 (365)
T ss_dssp             ECTTCTTEEEEECS
T ss_pred             ecCCCCCEEEEEeC
Confidence            999 8999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=1.8e-17  Score=143.11  Aligned_cols=80  Identities=26%  Similarity=0.335  Sum_probs=67.6

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -.|+|+...++...+   +++..|++++|||||++||+++..+++|.+||+.+   .+.+..+..+              
T Consensus        14 v~v~D~~t~~~~~~i---~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---~~~~~~~~~~--------------   73 (301)
T d1l0qa2          14 ISVIDVTSNKVTATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG--------------   73 (301)
T ss_dssp             EEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS--------------
T ss_pred             EEEEECCCCeEEEEE---ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---Cceeeeeecc--------------
Confidence            578999999988877   78889999999999999999998899999999865   4444444332              


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne  129 (290)
                                        ..|+.++|+++|+++|+++.
T Consensus        74 ------------------~~~~~~~~~~~~~~~~~~~~   93 (301)
T d1l0qa2          74 ------------------SSPQGVAVSPDGKQVYVTNM   93 (301)
T ss_dssp             ------------------SSEEEEEECTTSSEEEEEET
T ss_pred             ------------------cccccccccccccccccccc
Confidence                              57899999999999999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4.4e-18  Score=159.79  Aligned_cols=177  Identities=14%  Similarity=0.092  Sum_probs=122.5

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      -.++|....++...+   +++..|++++||||||+||+++. +|+|++||+.. ..+..+.++..+              
T Consensus        44 v~v~D~~t~~v~~~~---~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t-~~~~~~~~i~~~--------------  104 (432)
T d1qksa2          44 IALIDGSTYEIKTVL---DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWM-KEPTTVAEIKIG--------------  104 (432)
T ss_dssp             EEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCCEEEEEECC--------------
T ss_pred             EEEEECCCCcEEEEE---eCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeC-CCceEEEEEecC--------------
Confidence            578899999988877   67778999999999999999986 78999999965 334455555443              


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEE----ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQL----SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vaf----sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                                        .+|+++++    ||||++||++++....+               .+++...   .+.+..++
T Consensus       105 ------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v---------------~i~d~~t---~~~~~~~~  148 (432)
T d1qksa2         105 ------------------SEARSIETSKMEGWEDKYAIAGAYWPPQY---------------VIMDGET---LEPKKIQS  148 (432)
T ss_dssp             ------------------SEEEEEEECCSTTCTTTEEEEEEEETTEE---------------EEEETTT---CCEEEEEE
T ss_pred             ------------------CCCCCeEEecccCCCCCEEEEEcCCCCeE---------------EEEeCcc---ccceeeec
Confidence                              46677664    67999999988743322               2222211   11111110


Q ss_pred             cc--ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC
Q psy11412        168 LS--SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP  245 (290)
Q Consensus       168 ~~--~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~  245 (290)
                      ..  ...............|++||||+++|++...++.|.+||..+. +...+.++++|.                    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~-~~~~~~~i~~g~--------------------  207 (432)
T d1qksa2         149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL-NNLKTTEISAER--------------------  207 (432)
T ss_dssp             CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS-SEEEEEEEECCS--------------------
T ss_pred             cCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC-CcceEEEEcccC--------------------
Confidence            00  0000001112356679999999999999988999999998653 233456666655                    


Q ss_pred             CcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        246 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       246 ~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                  .|+.++|+|||++||+++.
T Consensus       208 ------------~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         208 ------------FLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             ------------SEEEEEECTTSCEEEEEEG
T ss_pred             ------------ccccceECCCCCEEEEecc
Confidence                        7999999999999999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.8e-16  Score=138.34  Aligned_cols=151  Identities=16%  Similarity=0.076  Sum_probs=91.9

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.|+|+...++...+-....+..|.+++|||||++||+++..+++|.+||+.+   .+.+..+.....           
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~~~-----------   77 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTP-----------   77 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBT-----------
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecCCC-----------
Confidence            457899999888876611123457899999999999999988889999999965   344444333210           


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                     ...+..+.+++|+|||+++|+++......... +.   .....+..++...   ...+..     
T Consensus        78 ---------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~-~~---~~~~~~~~~d~~~---~~~~~~-----  130 (337)
T d1pbyb_          78 ---------------EERVKSLFGAALSPDGKTLAIYESPVRLELTH-FE---VQPTRVALYDAET---LSRRKA-----  130 (337)
T ss_dssp             ---------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSC-EE---ECCCEEEEEETTT---TEEEEE-----
T ss_pred             ---------------cccccceeeEEEcCCCcEEEEeecCCcceeee-cc---ccccceeeccccC---CeEEEe-----
Confidence                           00124577899999999999987521110000 00   0011111122111   111111     


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                           ++....+..++|||||+++|+++.   .+.+||+.
T Consensus       131 -----~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~d~~  162 (337)
T d1pbyb_         131 -----FEAPRQITMLAWARDGSKLYGLGR---DLHVMDPE  162 (337)
T ss_dssp             -----EECCSSCCCEEECTTSSCEEEESS---SEEEEETT
T ss_pred             -----ccccCCceEEEEcCCCCEEEEEcC---Ccceeeee
Confidence                 112234667999999999999873   46677764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.4e-15  Score=133.12  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=105.2

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC-ceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~-~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ..++.|.+|+|||||++||+++..+++|.+|++..... .+.......                                
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~--------------------------------   81 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--------------------------------   81 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--------------------------------
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc--------------------------------
Confidence            35567889999999999999998899999999975322 222222111                                


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                      +..|.+++|+|||++||+++.....               +..++...........          ....+..+.++.||
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~---------------v~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGN---------------VSVTRLEDGLPVGVVD----------VVEGLDGCHSANIS  136 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTE---------------EEEEEEETTEEEEEEE----------EECCCTTBCCCEEC
T ss_pred             CCCceEEEEcCCCCEEeecccCCCc---------------eeeeccccccceeccc----------ccCCCccceEEEee
Confidence            2578999999999999998763222               2111111100000000          00112356779999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      |||+++|++++..+.|.+|+........... .....                           ...+..|+.++|++++
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~---------------------------~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQD-PAEVT---------------------------TVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEE-EEEEE---------------------------CSTTCCEEEEEECTTS
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeee-ceeee---------------------------eecCCCccEEEEeccc
Confidence            9999999999888999999986533221111 11000                           0112379999999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      +.+|+++.
T Consensus       189 ~~~~~~~~  196 (333)
T d1ri6a_         189 QYAYCVNE  196 (333)
T ss_dssp             SEEEEEET
T ss_pred             eeEEeecc
Confidence            99999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=1.9e-15  Score=139.93  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=118.7

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-+++|+.++++...+   +.+..|++++|||||++||+++. +++|++||+.. +.+..+.++..+             
T Consensus        43 ~v~vwD~~t~~~~~~l---~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t-~~~~~~~~i~~~-------------  104 (426)
T d1hzua2          43 QIALVDGDSKKIVKVI---DTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWA-KEPTKVAEIKIG-------------  104 (426)
T ss_dssp             EEEEEETTTCSEEEEE---ECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCEEEEEEECC-------------
T ss_pred             EEEEEECCCCcEEEEE---eCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccC-CceeEEEEEeCC-------------
Confidence            3578999999988877   67778999999999999999986 68999999975 334444444433             


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEE----EccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQ----LSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM  166 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~va----fsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  166 (290)
                                         .+|++++    |||||++||++++....+.....    ..+..+   .....         
T Consensus       105 -------------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~----~~~~~~---~~~~~---------  149 (426)
T d1hzua2         105 -------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----ETLEPK---QIVST---------  149 (426)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----TTCCEE---EEEEC---------
T ss_pred             -------------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC----Ccccee---EEeec---------
Confidence                               3556655    56799999998863332221110    011100   11000         


Q ss_pred             CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412        167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD  246 (290)
Q Consensus       167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~  246 (290)
                      ....+..-..........+++|+|++.+++++.+.+.|.+++..+... ..+..++.+.                     
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~---------------------  207 (426)
T d1hzua2         150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTSIGAAP---------------------  207 (426)
T ss_dssp             CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS-CEEEEEECCS---------------------
T ss_pred             cCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc-eeeEEeccCC---------------------
Confidence            000000001112235677899999999999999889998887755322 2334444433                     


Q ss_pred             cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                 .|+.++|+|+|+++++++.
T Consensus       208 -----------~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         208 -----------FLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             -----------SEEEEEECTTSCEEEEEET
T ss_pred             -----------ccEeeeECCCCcEEEeeee
Confidence                       7999999999999999976

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.7e-15  Score=131.26  Aligned_cols=144  Identities=13%  Similarity=0.195  Sum_probs=94.5

Q ss_pred             CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEE
Q psy11412         45 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  124 (290)
Q Consensus        45 r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~l  124 (290)
                      +.+||++..+++|++|++...+.++++..+..+                                ..|++|+|||||++|
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--------------------------------~~v~~la~spDG~~L   51 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP--------------------------------GQVQPMVVSPDKRYL   51 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS--------------------------------SCCCCEEECTTSSEE
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC--------------------------------CCEeEEEEeCCCCEE
Confidence            568999999999999999765555666544332                                578899999999999


Q ss_pred             EEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcE
Q psy11412        125 YVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDI  204 (290)
Q Consensus       125 Yv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V  204 (290)
                      |+++...+.               +.++++..   ......     ... ....+..+.+|+|||||++||++++.+++|
T Consensus        52 ~v~~~~d~~---------------i~~~~i~~---~~~~~~-----~~~-~~~~~~~p~~l~~spDg~~l~v~~~~~~~v  107 (333)
T d1ri6a_          52 YVGVRPEFR---------------VLAYRIAP---DDGALT-----FAA-ESALPGSLTHISTDHQGQFVFVGSYNAGNV  107 (333)
T ss_dssp             EEEETTTTE---------------EEEEEECT---TTCCEE-----EEE-EEECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEECCCCe---------------EEEEEEeC---CCCcEE-----Eee-ecccCCCceEEEEcCCCCEEeecccCCCce
Confidence            998863222               22222211   000000     000 001123467899999999999999889999


Q ss_pred             EEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        205 RQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       205 ~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      .+|+..+.   ...........                             ...|+.+.|+|||+++++++.
T Consensus       108 ~~~~~~~~---~~~~~~~~~~~-----------------------------~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_         108 SVTRLEDG---LPVGVVDVVEG-----------------------------LDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             EEEEEETT---EEEEEEEEECC-----------------------------CTTBCCCEECTTSSEEEEEEG
T ss_pred             eeeccccc---cceecccccCC-----------------------------CccceEEEeeecceeeecccc
Confidence            99988642   22111111110                             126889999999999999875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.63  E-value=5.2e-16  Score=146.77  Aligned_cols=188  Identities=10%  Similarity=0.022  Sum_probs=108.2

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      ..++||||+|||++..+++|.++|+++   .+....+.+.                              .+.+|++++|
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t---~k~~~ii~iP------------------------------~g~gphgi~~  123 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDI---MKTDKITHIP------------------------------NVQAIHGLRL  123 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTT---TEEEEEEECT------------------------------TCCCEEEEEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCC---CcEeeEEecC------------------------------CCCCccceEE
Confidence            446899999999999999999999865   3333322221                              2479999999


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      +|||+++||++.....+.................+..++......          .|.++.+..+..+++||||+++|++
T Consensus       124 spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v----------~~qI~v~~~p~~v~~spdGk~a~vt  193 (441)
T d1qnia2         124 QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV----------AWQVIVDGNLDNTDADYTGKYATST  193 (441)
T ss_dssp             CCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE----------EEEEEESSCCCCEEECSSSSEEEEE
T ss_pred             eccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee----------eEEEecCCCccceEECCCCCEEEEE
Confidence            999999999876322211100000000001111222333111111          1222333457789999999999999


Q ss_pred             eCCCCcEEEEEecCCCCceEeeEEeeCc-----ee--------cCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        198 NWMHGDIRQYDIRDTAHPVLVGQIFLGG-----KI--------QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       198 ~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg-----~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      +...+.+.+++...   .+.+..+.++.     .+        -.++.+.+++...     ......-++.+.+|+++++
T Consensus       194 ~~nse~~~~id~~t---~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~-----~~~v~~~IPvgksPhGv~v  265 (441)
T d1qnia2         194 CYNSERAVDLAGTM---RNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG-----ESEFTRYIPVPKNPHGLNT  265 (441)
T ss_dssp             ESCTTCCSSHHHHT---CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS-----SCSSEEEECCBSSCCCEEE
T ss_pred             ecCCCceEEEeccC---cceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc-----CCceEEEEeCCCCccCceE
Confidence            97777666555432   22223332221     11        1122333433221     1112223455668999999


Q ss_pred             ccCCCEEEEEcC
Q psy11412        265 SLDGKRIYVSSS  276 (290)
Q Consensus       265 sPDG~~L~Van~  276 (290)
                      ||||+++||+|.
T Consensus       266 SPDGkyl~~~~~  277 (441)
T d1qnia2         266 SPDGKYFIANGK  277 (441)
T ss_dssp             CTTSCEEEEECT
T ss_pred             CCCCCEEEEeCC
Confidence            999999999987

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.62  E-value=1e-14  Score=133.72  Aligned_cols=173  Identities=10%  Similarity=0.179  Sum_probs=104.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|..|+|||||++||+++.  +.+..|.+............                                ..+.+|.
T Consensus        41 ~~s~la~s~d~~~ly~~~~--~~~~~~~i~~~~~~~~~~~~--------------------------------~~~~~p~   86 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM--KKWSSFAVKSPTEIVHEASH--------------------------------PIGGHPR   86 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB--TEEEEEEEEETTEEEEEEEE--------------------------------ECCSSGG
T ss_pred             CCCEEEEcCCCCEEEEEeC--CcEEEEEEeCCCCeEEEeee--------------------------------cCCCCcE
Confidence            4567999999999999985  57888888643222111111                                1236899


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      ++++++||+.+|+++.-.+...+..++-. .++.......+..   ...+.    ............++..++|||||++
T Consensus        87 ~v~~~~~~~~~~v~~a~~~~~~v~~~~~~-~~~~~~~~~~~~~---~~~~~----~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          87 ANDADTNTRAIFLLAAKQPPYAVYANPFY-KFAGYGNVFSVSE---TGKLE----KNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEES-SSCCEEEEEEECT---TCCEE----EEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             EEEECCCCCEEEEEEecCCCCEEEEeEcc-CCCCcceeEeeee---cceec----CcccCcccCCCCcceEEEECCCCCE
Confidence            99999999999987642222222211100 1122211111110   00000    0000001112357889999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      ||+++.+.+.|.+|++...+....+..+....                             .+.+||+++|+|||+++||
T Consensus       159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-----------------------------~g~gPr~i~f~pdg~~~yv  209 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLASGEVELVGSVDAPD-----------------------------PGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECSS-----------------------------TTCCEEEEEECTTSSEEEE
T ss_pred             EEEeeCCCCEEEEEEccCCCceeeccceeecC-----------------------------CCCceEEEEECCCCceEEE
Confidence            99999999999999986544443343332211                             1348999999999999999


Q ss_pred             EcCC
Q psy11412        274 SSSL  277 (290)
Q Consensus       274 an~~  277 (290)
                      +|+.
T Consensus       210 ~~e~  213 (365)
T d1jofa_         210 LMEA  213 (365)
T ss_dssp             EETT
T ss_pred             eccC
Confidence            9984

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=2.2e-14  Score=125.16  Aligned_cols=90  Identities=21%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      .-.|+|+..+++...+ ..+-...|.+++|||||++|||++..++.|.+||+..   .+.+..+..+...          
T Consensus        19 ~v~v~D~~t~~~~~t~-~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t---~~~~~~~~~~~~~----------   84 (346)
T d1jmxb_          19 NLHVVDVASDTVYKSC-VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSVP----------   84 (346)
T ss_dssp             EEEEEETTTTEEEEEE-ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCST----------
T ss_pred             EEEEEECCCCCEEEEE-EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc---Ceeeeeecccccc----------
Confidence            3569999999988766 2223457999999999999999998899999999864   4555444332100          


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne  129 (290)
                                     ......|.+++|||||+++|+++.
T Consensus        85 ---------------~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          85 ---------------GEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             ---------------TEEEECSSCEEECTTSSEEEEEEE
T ss_pred             ---------------cccCCceEEEEEecCCCEEEEEec
Confidence                           001136888999999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.54  E-value=1.4e-13  Score=118.12  Aligned_cols=134  Identities=22%  Similarity=0.358  Sum_probs=97.9

Q ss_pred             CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEE
Q psy11412         45 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  124 (290)
Q Consensus        45 r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~l  124 (290)
                      .|+||++..+++|.+||+.+   .+++.++.++                                ..|++++|||||++|
T Consensus         2 ~~~yV~~~~~~~v~v~D~~t---~~~~~~i~~g--------------------------------~~p~~va~spdG~~l   46 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVTS---NKVTATIPVG--------------------------------SNPMGAVISPDGTKV   46 (301)
T ss_dssp             EEEEEEETTTTEEEEEETTT---TEEEEEEECS--------------------------------SSEEEEEECTTSSEE
T ss_pred             eEEEEEECCCCEEEEEECCC---CeEEEEEECC--------------------------------CCceEEEEeCCCCEE
Confidence            48999999999999999865   4666666554                                579999999999999


Q ss_pred             EEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcE
Q psy11412        125 YVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDI  204 (290)
Q Consensus       125 Yv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V  204 (290)
                      |+++..               ++.+.+++..+   .+.+..          ++.+..+..+++++||+++++++..+..+
T Consensus        47 ~v~~~~---------------~~~i~v~d~~t---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (301)
T d1l0qa2          47 YVANAH---------------SNDVSIIDTAT---NNVIAT----------VPAGSSPQGVAVSPDGKQVYVTNMASSTL   98 (301)
T ss_dssp             EEEEGG---------------GTEEEEEETTT---TEEEEE----------EECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEECC---------------CCEEEEEECCC---Cceeee----------eecccccccccccccccccccccccccee
Confidence            998762               22333344322   222222          11234578899999999999999888999


Q ss_pred             EEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        205 RQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       205 ~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                      .+|+..+   .+.+..+....                                .|..+.|+|||+++++++.
T Consensus        99 ~~~~~~~---~~~~~~~~~~~--------------------------------~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          99 SVIDTTS---NTVAGTVKTGK--------------------------------SPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             EEEETTT---TEEEEEEECSS--------------------------------SEEEEEECTTSSEEEEEET
T ss_pred             eeccccc---ceeeeeccccc--------------------------------cceEEEeecCCCeeeeeec
Confidence            9998753   44555444333                                6889999999999998865

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=4.4e-14  Score=133.36  Aligned_cols=157  Identities=11%  Similarity=-0.026  Sum_probs=95.7

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEE---------------EEcCCCCCceeeeEEe
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQ---------------YDIRDTAHPVLVGQIF   75 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v---------------~dv~d~~~~~~~~~i~   75 (290)
                      .-.+||+.+.++...+ .++....|++++|+|||+++||++.+.+.+.+               +..-|....+...++.
T Consensus        95 rVavIDl~t~k~~~ii-~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          95 RVARIRLDIMKTDKIT-HIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             EEEEEETTTTEEEEEE-ECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             EEEEEECCCCcEeeEE-ecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            4567888877766654 33566799999999999999999877666643               1111111222222222


Q ss_pred             ecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcce-----------e---eccc
Q psy11412         76 LGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK-----------E---IYPD  141 (290)
Q Consensus        76 ~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~-----------~---~~~~  141 (290)
                      +                                +..|++++|+|||+++|+++........           .   ..+.
T Consensus       174 v--------------------------------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         174 V--------------------------------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             E--------------------------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             c--------------------------------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence            2                                3579999999999999999763322111           0   0000


Q ss_pred             ---ccCCCceeec-----ceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        142 ---LVKTDAAFGS-----DEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       142 ---~~~~g~~~~~-----~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                         ..++|..+..     .-+........++          .+|.+..|.+|.+||||+++|+++..+++|+|||+.
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~----------~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTR----------YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEE----------EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEE----------EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence               0011211110     0011000011122          244556788999999999999999999999999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.51  E-value=2.1e-14  Score=125.34  Aligned_cols=184  Identities=10%  Similarity=0.074  Sum_probs=104.8

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412         38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  117 (290)
Q Consensus        38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf  117 (290)
                      ++||++|++|++++. +++|.+||+..   .+++..+.+.+                              +.+|.+++|
T Consensus         2 ~a~~~~~~~l~~~~~-~~~v~v~D~~t---~~~~~t~~~~~------------------------------~~~p~~l~~   47 (346)
T d1jmxb_           2 PALKAGHEYMIVTNY-PNNLHVVDVAS---DTVYKSCVMPD------------------------------KFGPGTAMM   47 (346)
T ss_dssp             CCCCTTCEEEEEEET-TTEEEEEETTT---TEEEEEEECSS------------------------------CCSSCEEEE
T ss_pred             ccCCCCCcEEEEEcC-CCEEEEEECCC---CCEEEEEEcCC------------------------------CCCcceEEE
Confidence            589999999999886 78999999864   46665554431                              257999999


Q ss_pred             ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412        118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS  197 (290)
Q Consensus       118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs  197 (290)
                      +|||+++||++...+               .+..+|...   .+.+..+.......   .....+.+++|||||++||++
T Consensus        48 spDG~~l~v~~~~~~---------------~v~~~d~~t---~~~~~~~~~~~~~~---~~~~~~~~v~~s~DG~~l~v~  106 (346)
T d1jmxb_          48 APDNRTAYVLNNHYG---------------DIYGIDLDT---CKNTFHANLSSVPG---EVGRSMYSFAISPDGKEVYAT  106 (346)
T ss_dssp             CTTSSEEEEEETTTT---------------EEEEEETTT---TEEEEEEESCCSTT---EEEECSSCEEECTTSSEEEEE
T ss_pred             CCCCCEEEEEECCCC---------------cEEEEeCcc---Ceeeeeeccccccc---ccCCceEEEEEecCCCEEEEE
Confidence            999999999886322               233233221   11121111100000   001245679999999999998


Q ss_pred             eC-----------CCCcEEEEEecCCCCceEeeEEeeCce-----ecCCCceEEecCCCCC-CCCCcceeecccccCCcc
Q psy11412        198 NW-----------MHGDIRQYDIRDTAHPVLVGQIFLGGK-----IQSDSGVTVIDDPELD-KQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       198 ~r-----------~~~~V~v~Dv~d~~~~~~v~~i~~Gg~-----~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~P~  260 (290)
                      +.           .+..+.+||..+......+.....+..     .++++.+.+.+..... .........-...+..|+
T Consensus       107 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (346)
T d1jmxb_         107 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR  186 (346)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCC
T ss_pred             ecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCcc
Confidence            74           356788888754221112222211111     1344444433311100 000011122233345788


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .+.++|+|+.+++++.
T Consensus       187 ~~~~~~~~~~~~~~~~  202 (346)
T d1jmxb_         187 KGYSAPDVLYFWPHQS  202 (346)
T ss_dssp             TTBCCCBCCCCCCCCC
T ss_pred             ceEEeccccEEEEEec
Confidence            9999999999887755

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.50  E-value=5e-13  Score=119.21  Aligned_cols=139  Identities=11%  Similarity=-0.021  Sum_probs=89.7

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCC---------CCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWM---------HGDIRQYDIRDTAHPVLVGQIFLGGKIQS   82 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~---------~g~V~v~dv~d~~~~~~~~~i~~g~~~~~   82 (290)
                      -.|+|....++...+   ..+ ...+++|||||++||+++..         ++.|.+||...   .+.+..+..+..   
T Consensus        49 v~v~D~~tg~~~~~~---~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t---~~~~~~~~~~~~---  118 (373)
T d2madh_          49 QWVLDAGSGSILGHV---NGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPDA---  118 (373)
T ss_pred             EEEEECCCCCEEEEE---eCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC---CcEEEEEecCCc---
Confidence            568888888877765   333 34479999999999999753         46799999865   344444333210   


Q ss_pred             CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc
Q psy11412         83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE  162 (290)
Q Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~  162 (290)
                        .                   ....+..|++++|+|||+++|+.+..              .+..+..++...   .+.
T Consensus       119 --~-------------------~~~~~~~~~~~~~s~dg~~~~v~~~~--------------~~~~~~~~~~~~---~~~  160 (373)
T d2madh_         119 --P-------------------RFDVGPYSWMNANTPNNADLLFFQFA--------------AGPAVGLVVQGG---SSD  160 (373)
T ss_pred             --c-------------------eeEeccCCCcEEEEeCCCcEEEEEEc--------------CCCceEEeeccC---CeE
Confidence              0                   00112467889999999999997641              111121122111   111


Q ss_pred             ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412        163 MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       163 i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      +.             ....+..++++|||+++|+++..++++.+|+...
T Consensus       161 ~~-------------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         161 DQ-------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             EE-------------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            11             1123456899999999999998999999999753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=1.2e-13  Score=119.89  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=92.5

Q ss_pred             CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEE
Q psy11412         45 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  124 (290)
Q Consensus        45 r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~l  124 (290)
                      +|++++.. +++|.+||+..   .+++..+..+.                             .+..|.+++|||||++|
T Consensus         2 ~~~vt~~~-d~~v~v~D~~s---~~~~~~i~~~~-----------------------------~~~~~~~i~~spDg~~l   48 (337)
T d1pbyb_           2 DYILAPAR-PDKLVVIDTEK---MAVDKVITIAD-----------------------------AGPTPMVPMVAPGGRIA   48 (337)
T ss_dssp             EEEEEEET-TTEEEEEETTT---TEEEEEEECTT-----------------------------CTTCCCCEEECTTSSEE
T ss_pred             eEEEEEcC-CCEEEEEECCC---CeEEEEEECCC-----------------------------CCCCccEEEECCCCCEE
Confidence            46766664 79999999865   56666655431                             13578899999999999


Q ss_pred             EEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeC-----
Q psy11412        125 YVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNW-----  199 (290)
Q Consensus       125 Yv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r-----  199 (290)
                      ||++...               +.+.++|+.+   .+.+..++......    ....+.+++|||||++||++++     
T Consensus        49 ~v~~~~~---------------~~v~v~D~~t---~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~~~~~~  106 (337)
T d1pbyb_          49 YATVNKS---------------ESLVKIDLVT---GETLGRIDLSTPEE----RVKSLFGAALSPDGKTLAIYESPVRLE  106 (337)
T ss_dssp             EEEETTT---------------TEEEEEETTT---CCEEEEEECCBTTE----EEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred             EEEECCC---------------CeEEEEECCC---CcEEEEEecCCCcc----cccceeeEEEcCCCcEEEEeecCCcce
Confidence            9987522               2333333322   11111111100000    0123557999999999999875     


Q ss_pred             ------CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        200 ------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       200 ------~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                            .++.+.+||...   .+.+..++.+.                                .|..++|+|||++||+
T Consensus       107 ~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~--------------------------------~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAET---LSRRKAFEAPR--------------------------------QITMLAWARDGSKLYG  151 (337)
T ss_dssp             SSCEEECCCEEEEEETTT---TEEEEEEECCS--------------------------------SCCCEEECTTSSCEEE
T ss_pred             eeeccccccceeeccccC---CeEEEeccccC--------------------------------CceEEEEcCCCCEEEE
Confidence                  245666676642   34444444333                                6889999999999999


Q ss_pred             EcCCCCCCC
Q psy11412        274 SSSLFSPWD  282 (290)
Q Consensus       274 an~~~~~~~  282 (290)
                      ++.....|+
T Consensus       152 ~~~~~~~~d  160 (337)
T d1pbyb_         152 LGRDLHVMD  160 (337)
T ss_dssp             ESSSEEEEE
T ss_pred             EcCCcceee
Confidence            987544443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=9.8e-12  Score=115.83  Aligned_cols=160  Identities=13%  Similarity=0.027  Sum_probs=97.4

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEE----cCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILI----SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT   87 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~----SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~   87 (290)
                      ..++|+...+..... .+++...+.++++    ||||++||++++.+++|.+||...   .+.+..+...+.....  . 
T Consensus        85 v~~~d~~t~~~~~~~-~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t---~~~~~~~~~~~~~~~~--~-  157 (432)
T d1qksa2          85 VNMIDLWMKEPTTVA-EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDE--Q-  157 (432)
T ss_dssp             EEEEETTSSSCCEEE-EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTT--C-
T ss_pred             EEEEEeeCCCceEEE-EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc---ccceeeeccCCccccc--e-
Confidence            467787765533322 2345556777654    679999999999999999999865   3333333221100000  0 


Q ss_pred             EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412         88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP  167 (290)
Q Consensus        88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p  167 (290)
                                       .......+..+++||||+.+|++...               .+.+..++..+.... .+.   
T Consensus       158 -----------------~~~~~~~~~~v~~s~dg~~~~vs~~~---------------~~~i~~~d~~~~~~~-~~~---  201 (432)
T d1qksa2         158 -----------------EYHPEPRVAAILASHYRPEFIVNVKE---------------TGKILLVDYTDLNNL-KTT---  201 (432)
T ss_dssp             -----------------CEESCCCEEEEEECSSSSEEEEEETT---------------TTEEEEEETTCSSEE-EEE---
T ss_pred             -----------------eccCCCceeEEEECCCCCEEEEEEcc---------------CCeEEEEEccCCCcc-eEE---
Confidence                             00012355668999999999987652               223333332221000 011   


Q ss_pred             ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                             .++.+..+.+++|||||++||+++...+.|.++|...   .+.+..+.+|
T Consensus       202 -------~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~---~~~~~~~~~g  248 (432)
T d1qksa2         202 -------EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE---GKLVAIEDTG  248 (432)
T ss_dssp             -------EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECS
T ss_pred             -------EEcccCccccceECCCCCEEEEeccccceEEEeeccc---ceEEEEeccC
Confidence                   1223456789999999999999998889999998753   4556666555

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.36  E-value=3.1e-12  Score=117.93  Aligned_cols=166  Identities=14%  Similarity=0.073  Sum_probs=100.0

Q ss_pred             CCCCceEEEEEcCCCC-EEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412         30 KVPAMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF  108 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr-~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  108 (290)
                      ++...|..+.++.|.+ .++|+..++|+|++||+..   .+++..+..|                               
T Consensus        16 ~~~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t---~~~~~~l~~g-------------------------------   61 (426)
T d1hzua2          16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDS---KKIVKVIDTG-------------------------------   61 (426)
T ss_dssp             CGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTT---CSEEEEEECC-------------------------------
T ss_pred             CcccCCCcccccCCCCeEEEEEEcCCCEEEEEECCC---CcEEEEEeCC-------------------------------
Confidence            3444666677888865 4458888899999999865   4555555443                               


Q ss_pred             CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412        109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS  188 (290)
Q Consensus       109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S  188 (290)
                       ..|++++||||||+||++++               ++ .+.++++.... ...+..++.+.  +    ....+..++||
T Consensus        62 -~~~~~vafSPDGk~l~~~~~---------------d~-~v~vwd~~t~~-~~~~~~i~~~~--~----~~~~~~s~~~s  117 (426)
T d1hzua2          62 -YAVHISRMSASGRYLLVIGR---------------DA-RIDMIDLWAKE-PTKVAEIKIGI--E----ARSVESSKFKG  117 (426)
T ss_dssp             -SSEEEEEECTTSCEEEEEET---------------TS-EEEEEETTSSS-CEEEEEEECCS--E----EEEEEECCSTT
T ss_pred             -CCeeEEEECCCCCEEEEEeC---------------CC-CEEEEEccCCc-eeEEEEEeCCC--C----CcceEEeeeec
Confidence             46899999999999999876               22 33334432210 00111111000  0    00123345667


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG  268 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG  268 (290)
                      |||++||+++..++.|.+||...   ...+..+...+...  ..                  ......+.+..+++++|+
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~---~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTV--DT------------------QTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECS--SS------------------CCEESCCCEEEEEECSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCc---cceeEEeeccCCCc--cc------------------eeecCCCceeEEEECCCC
Confidence            89999999998899999999853   23333332222100  00                  001112356788999999


Q ss_pred             CEEEEEcC
Q psy11412        269 KRIYVSSS  276 (290)
Q Consensus       269 ~~L~Van~  276 (290)
                      +.+++++.
T Consensus       175 ~~~~~~~~  182 (426)
T d1hzua2         175 PEFIVNVK  182 (426)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEecC
Confidence            99999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=6.4e-12  Score=110.69  Aligned_cols=164  Identities=13%  Similarity=0.055  Sum_probs=95.3

Q ss_pred             EEcCCCCEEEEEeCC----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         39 LISLDDRYLYTSNWM----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        39 a~SpDGr~Lyva~~~----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      +.+|||+++|+++..    .++|.+||...   .+++.++..|                                ..| +
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t---g~~~~~~~~g--------------------------------~~~-~   51 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDGG--------------------------------FLP-N   51 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEEC--------------------------------SSC-E
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCC---CcEEEEEECC--------------------------------CCC-c
Confidence            568999999999753    45799999754   5666665443                                234 6


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++||||||+||+++.........      ...+.+.++|...   .+.+..+......  ....+..+..++|||||+++
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g------~~d~~v~v~D~~t---~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~~  120 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARG------ERTDYVEVFDPVT---LLPTADIELPDAP--RFLVGTYPWMTSLTPDGKTL  120 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEE------EEEEEEEEECTTT---CCEEEEEEETTCC--CCCBSCCGGGEEECTTSSEE
T ss_pred             eEEcCCCCEEEEEeCCCcccccc------CCCCEEEEEECCC---CCEEEEEecCCcc--eeecCCCCceEEEecCCCee
Confidence            99999999999987521100000      0011233333222   2222211110000  01112356779999999999


Q ss_pred             EEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        195 YTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       195 yvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+.++.. ..+.+||...   .+.+..+++.+..      ...                  ..+.+..+++++||+.+++
T Consensus       121 ~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~------------------~~~~~~~~~~~~dg~~~~v  173 (355)
T d2bbkh_         121 LFYQFSPAPAVGVVDLEG---KAFKRMLDVPDCY------HIF------------------PTAPDTFFMHCRDGSLAKV  173 (355)
T ss_dssp             EEEECSSSCEEEEEETTT---TEEEEEEECCSEE------EEE------------------EEETTEEEEEETTSCEEEE
T ss_pred             EEecCCCCceeeeeecCC---CcEeeEEecCCcc------eEe------------------ecCCcceEEEcCCCCEEEE
Confidence            9988654 5688888753   5666666654321      000                  0113566788888888888


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      .+.
T Consensus       174 ~~~  176 (355)
T d2bbkh_         174 AFG  176 (355)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=1.8e-11  Score=110.09  Aligned_cols=92  Identities=11%  Similarity=-0.031  Sum_probs=57.1

Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      +++.++++|+++.+|++..-...+..       ..+..+   .+.+....+.+.+++          .+..+.+++||||
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~-------~~~~~v---~v~D~~t~~~~~~~~----------~~~~~~~~a~spD  324 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCL-------AAAENT---SSVTASVGQTSGPIS----------NGHDSDAIIAAQD  324 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTT-------SCEEEE---EEEESSSCCEEECCE----------EEEEECEEEECCS
T ss_pred             CceeEEEcCCCCEEEEEecCCCceee-------cCCceE---EEEECCCCcEeEEec----------CCCceeEEEECCC
Confidence            56678888888888886531111100       001122   223322223333211          2245778999999


Q ss_pred             CC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412        191 DR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG  225 (290)
Q Consensus       191 Gr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg  225 (290)
                      |+ +||++++++++|.+||...   .+.++++++|.
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~t---gk~~~~i~~g~  357 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAAS---DQDQSSVELDK  357 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSS---CEEEEECCCCS
T ss_pred             CCEEEEEEeCCCCeEEEEECCC---CCEEEEEECCC
Confidence            97 6899999999999999853   67888888766

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.31  E-value=2.2e-11  Score=108.31  Aligned_cols=160  Identities=10%  Similarity=-0.016  Sum_probs=94.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         32 PAMVTDILISLDDRYLYTSNWM----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      .+-+..+++||||+++|+++..    .+.|.+||...   .+++.++..+                              
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t---g~~~~~~~~~------------------------------   66 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS---GSILGHVNGG------------------------------   66 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCC---CCEEEEEeCC------------------------------
Confidence            3346788999999999998543    36789998654   4555544332                              


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI  187 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~  187 (290)
                         .+.+++|||||++||+++.....+...      ...+.+.++|...   .+.+..+......  .......+..++|
T Consensus        67 ---~~~~~a~SpDG~~l~va~~~~~~~~~~------~~~~~v~v~D~~t---~~~~~~~~~~~~~--~~~~~~~~~~~~~  132 (373)
T d2madh_          67 ---FLPNPVAAHSGSEFALASTSFSRIAKG------KRTDYVEVFDPVT---FLPIADIELPDAP--RFDVGPYSWMNAN  132 (373)
T ss_pred             ---CCccEEEcCCCCEEEEEeecCCccccc------ccceEEEEEECCC---CcEEEEEecCCcc--eeEeccCCCcEEE
Confidence               233799999999999987633221110      0122333344332   2322222111000  0011134677999


Q ss_pred             ccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412        188 SLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL  266 (290)
Q Consensus       188 SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP  266 (290)
                      +|||+.+|+.++. ++.+.+|+...   .+.+...                                   ..|..+.|+|
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~---~~~~~~~-----------------------------------~~~~~~~~s~  174 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGG---SSDDQLL-----------------------------------SSPTCYHIHP  174 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccC---CeEEEEe-----------------------------------ccceeEEEec
Confidence            9999999988754 46778887643   2232221                                   1466788888


Q ss_pred             CCCEEEEEcC
Q psy11412        267 DGKRIYVSSS  276 (290)
Q Consensus       267 DG~~L~Van~  276 (290)
                      +|+++|+++.
T Consensus       175 ~g~~~~v~~~  184 (373)
T d2madh_         175 GAPSTFYLLC  184 (373)
T ss_pred             CCCcEEEEEc
Confidence            8888887754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=1.3e-11  Score=111.09  Aligned_cols=144  Identities=10%  Similarity=-0.054  Sum_probs=84.0

Q ss_pred             CCCceEEEEEcCCCCEEEEE--eCCCCe--EEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         31 VPAMVTDILISLDDRYLYTS--NWMHGD--IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva--~~~~g~--V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      ..+..+.++.++||+..|++  +..+|+  |.++|.   ...+.++.+..+                             
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~---~~~~~~~~~~~~-----------------------------   65 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCA---GCGVTLGHSLGA-----------------------------   65 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEET---TTTEEEEEEEEC-----------------------------
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeC---CCCcEEEEEeCC-----------------------------
Confidence            34556677889999998776  344455  555564   345666655443                             


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                         ..+ +++|||||+++|+++.........      ...+.+.++|..+   .+.+..++...  ......+..+..++
T Consensus        66 ---~~~-~~a~spDg~~i~~~~~~~~~~~~g------~~d~~v~v~D~~t---~~~~~~i~~p~--~~~~~~g~~p~~~a  130 (368)
T d1mdah_          66 ---FLS-LAVAGHSGSDFALASTSFARSAKG------KRTDYVEVFDPVT---FLPIADIELPD--APRFSVGPRVHIIG  130 (368)
T ss_dssp             ---TTC-EEEECTTSSCEEEEEEEETTTTSS------SEEEEEEEECTTT---CCEEEEEEETT--SCSCCBSCCTTSEE
T ss_pred             ---CCC-cceECCCCCEEEEEcccCcccccc------ccCCeEEEEECCC---CcEeeeecCCc--cceecccCCccceE
Confidence               233 699999999999987521111000      0011233333322   22222221100  00001123456799


Q ss_pred             EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412        187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG  224 (290)
Q Consensus       187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G  224 (290)
                      ||||||+||++++..++|.+||+..   .+.+..+++.
T Consensus       131 ~SpDGk~l~va~~~~~~v~~~d~~~---~~~~~~~~~~  165 (368)
T d1mdah_         131 NCASSACLLFFLFGSSAAAGLSVPG---ASDDQLTKSA  165 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETT---TEEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCC---CcEeEEeecc
Confidence            9999999999998889999999864   4566666554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.1e-11  Score=107.21  Aligned_cols=217  Identities=16%  Similarity=0.095  Sum_probs=121.4

Q ss_pred             eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCC---------CCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412         10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWM---------HGDIRQYDIRDTAHPVLVGQIFLGGKI   80 (290)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~---------~g~V~v~dv~d~~~~~~~~~i~~g~~~   80 (290)
                      ....|+|....++...+   +.+..| +++|||||++||+++..         +|.|.+||...   .+.+..+..+...
T Consensus        28 ~~v~v~D~~tg~~~~~~---~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t---~~~~~~~~~~~~~  100 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMI---DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAP  100 (355)
T ss_dssp             EEEEEEETTTTEEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC
T ss_pred             CeEEEEECCCCcEEEEE---ECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC---CCEEEEEecCCcc
Confidence            34678899888877655   455445 69999999999998642         57899999865   3444444443100


Q ss_pred             cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec
Q psy11412         81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR  160 (290)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~  160 (290)
                                              ....+..|.+++|+|||+++|+++.....              .+..++..+   .
T Consensus       101 ------------------------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~--------------~~~~~~~~~---~  139 (355)
T d2bbkh_         101 ------------------------RFLVGTYPWMTSLTPDGKTLLFYQFSPAP--------------AVGVVDLEG---K  139 (355)
T ss_dssp             ------------------------CCCBSCCGGGEEECTTSSEEEEEECSSSC--------------EEEEEETTT---T
T ss_pred             ------------------------eeecCCCCceEEEecCCCeeEEecCCCCc--------------eeeeeecCC---C
Confidence                                    01124678999999999999998753211              111111111   1


Q ss_pred             ccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCC--ceEeeEE---eeCce---ecCCCc
Q psy11412        161 NEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH--PVLVGQI---FLGGK---IQSDSG  232 (290)
Q Consensus       161 ~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~--~~~v~~i---~~Gg~---~~~~~~  232 (290)
                      +.+..++...... ..+ ......+++++||+.+++.....+.+.+++......  ...+...   .-++.   ...++.
T Consensus       140 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d2bbkh_         140 AFKRMLDVPDCYH-IFP-TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK  217 (355)
T ss_dssp             EEEEEEECCSEEE-EEE-EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred             cEeeEEecCCcce-Eee-cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe
Confidence            1111111000000 000 112345899999999999998888888887743211  1111111   11111   145666


Q ss_pred             eEEecCCCCCCC-------CCcc-eeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412        233 VTVIDDPELDKQ-------PDPV-IIKGRRFTGSSQMFQLSLDGKRIYVSSSL  277 (290)
Q Consensus       233 v~~~~~~~~~~~-------~~~~-~~~~~~~~~~P~~~a~sPDG~~L~Van~~  277 (290)
                      +.+++.......       +... ...+.. ....+.++++|||+++|++...
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWR-PGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEE-ECSSSCEEEETTTTEEEEEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeee-ccceEEEEEeCCCCeEEEEecc
Confidence            777775543210       0000 000001 1245789999999999998653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.1e-10  Score=104.81  Aligned_cols=152  Identities=7%  Similarity=-0.043  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412         35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM  114 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~  114 (290)
                      +..++|||||++|+++. .++.|++||++. .....+..+. |+                              ......
T Consensus        10 It~~~~s~dg~~la~~~-~~~~i~iw~~~~-~~~~~~~~l~-gH------------------------------~~~V~~   56 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICP-NNHEVHIYEKSG-NKWVQVHELK-EH------------------------------NGQVTG   56 (371)
T ss_dssp             CCEEEECTTSSEEEEEC-SSSEEEEEEEET-TEEEEEEEEE-CC------------------------------SSCEEE
T ss_pred             eEEEEECCCCCEEEEEe-CCCEEEEEECCC-CCEEEEEEec-CC------------------------------CCCEEE
Confidence            56899999999998775 478999999864 2233333221 11                              145788


Q ss_pred             EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412        115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL  194 (290)
Q Consensus       115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L  194 (290)
                      ++|+|+|++|++++.               ++ .+.+|+........ ...     ..+    ....+..+.|+|||++|
T Consensus        57 l~fsp~~~~l~s~s~---------------D~-~i~vWd~~~~~~~~-~~~-----~~~----~~~~v~~i~~~p~~~~l  110 (371)
T d1k8kc_          57 VDWAPDSNRIVTCGT---------------DR-NAYVWTLKGRTWKP-TLV-----ILR----INRAARCVRWAPNEKKF  110 (371)
T ss_dssp             EEEETTTTEEEEEET---------------TS-CEEEEEEETTEEEE-EEE-----CCC----CSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEEEEEC---------------CC-eEEEEeeccccccc-ccc-----ccc----ccccccccccccccccc
Confidence            999999999987654               22 34444443210000 000     000    12356789999999999


Q ss_pred             EEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEE
Q psy11412        195 YTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       195 yvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Va  274 (290)
                      +++. .+++|.+|++.............-+.                              .+....++|+|||++|+++
T Consensus       111 ~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~------------------------------~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_         111 AVGS-GSRVISICYFEQENDWWVCKHIKKPI------------------------------RSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EEEE-TTSSEEEEEEETTTTEEEEEEECTTC------------------------------CSCEEEEEECTTSSEEEEE
T ss_pred             eeec-ccCcceeeeeeccccccccccccccc------------------------------ccccccccccccccceecc
Confidence            9888 78999999986543322222211111                              1246789999999999887


Q ss_pred             cC
Q psy11412        275 SS  276 (290)
Q Consensus       275 n~  276 (290)
                      ..
T Consensus       160 s~  161 (371)
T d1k8kc_         160 SC  161 (371)
T ss_dssp             ET
T ss_pred             cc
Confidence            53

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.28  E-value=1.4e-11  Score=107.77  Aligned_cols=138  Identities=11%  Similarity=0.018  Sum_probs=87.9

Q ss_pred             EEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEE
Q psy11412         38 ILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  116 (290)
Q Consensus        38 va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~va  116 (290)
                      -.||| ||++++.+.  .|.|.+||+...   ..+.   +++                              +...+.++
T Consensus         8 ~~fSP~dG~~~a~~~--~g~v~v~d~~~~---~~~~---~~~------------------------------~~~v~~~~   49 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS--RGQAFIQDVSGT---YVLK---VPE------------------------------PLRIRYVR   49 (360)
T ss_dssp             EEEEECGGGCEEEEE--TTEEEEECTTSS---BEEE---CSC------------------------------CSCEEEEE
T ss_pred             ccccCCCCCEEEEEE--CCeEEEEECCCC---cEEE---ccC------------------------------CCCEEEEE
Confidence            45999 999998775  479999998642   1211   121                              14678999


Q ss_pred             EccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEE
Q psy11412        117 LSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYT  196 (290)
Q Consensus       117 fsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyv  196 (290)
                      |||||++|+++++.              ++..+.+++...   . .+..     .    .........++|||||++|++
T Consensus        50 ~spDg~~l~~~~~~--------------~g~~v~v~d~~~---~-~~~~-----~----~~~~~~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          50 RGGDTKVAFIHGTR--------------EGDFLGIYDYRT---G-KAEK-----F----EENLGNVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             ECSSSEEEEEEEET--------------TEEEEEEEETTT---C-CEEE-----C----CCCCCSEEEEEECTTSSEEEE
T ss_pred             ECCCCCEEEEEEcC--------------CCCEEEEEECCC---C-cEEE-----e----eCCCceEEeeeecccccccce
Confidence            99999999987651              222333233211   1 1111     0    012245678999999999998


Q ss_pred             EeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412        197 SNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS  275 (290)
Q Consensus       197 s~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van  275 (290)
                      +. .++.+.+|++...   .....+....                               ...+.++|+|||++|+.+.
T Consensus       103 ~~-~~~~~~~~~~~~~---~~~~~~~~~~-------------------------------~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         103 AN-DRFEIMTVDLETG---KPTVIERSRE-------------------------------AMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EE-TTSEEEEEETTTC---CEEEEEECSS-------------------------------SCCCCEEECTTSCEEEEEE
T ss_pred             ec-ccccccccccccc---ceeeeeeccc-------------------------------ccccchhhccceeeeeeec
Confidence            88 6888999998532   2222111111                               1467899999999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=6e-11  Score=103.63  Aligned_cols=170  Identities=15%  Similarity=0.123  Sum_probs=99.1

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID   90 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~-g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~   90 (290)
                      ..+.|+..+++...    .-+..+.+++|||||++|++++..+ ..|.+||... +..+.+.    ++            
T Consensus        26 v~v~d~~~~~~~~~----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~~~~~~~----~~------------   84 (360)
T d1k32a3          26 AFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFE----EN------------   84 (360)
T ss_dssp             EEEECTTSSBEEEC----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-CCEEECC----CC------------
T ss_pred             EEEEECCCCcEEEc----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-CcEEEee----CC------------
Confidence            35666666555442    2345788999999999998775443 4799999865 2222211    10            


Q ss_pred             CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412         91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS  170 (290)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~  170 (290)
                                        ...+..++|||||++|++.+..                ..+..++....   +......   
T Consensus        85 ------------------~~~v~~~~~spdg~~l~~~~~~----------------~~~~~~~~~~~---~~~~~~~---  124 (360)
T d1k32a3          85 ------------------LGNVFAMGVDRNGKFAVVANDR----------------FEIMTVDLETG---KPTVIER---  124 (360)
T ss_dssp             ------------------CCSEEEEEECTTSSEEEEEETT----------------SEEEEEETTTC---CEEEEEE---
T ss_pred             ------------------CceEEeeeecccccccceeccc----------------ccccccccccc---ceeeeee---
Confidence                              1467889999999999987651                12222222110   0000000   


Q ss_pred             cCccccCCCCceeEEEEccCCCEEEEEeC---------CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCC
Q psy11412        171 LGSWKYPARSMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPEL  241 (290)
Q Consensus       171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r---------~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~  241 (290)
                            ........+++||||++|+.+..         .++.+.+||+..   .... .+..+.                
T Consensus       125 ------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~~~~-~~~~~~----------------  178 (360)
T d1k32a3         125 ------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---RKIF-AATTEN----------------  178 (360)
T ss_dssp             ------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT---TEEE-ECSCSS----------------
T ss_pred             ------cccccccchhhccceeeeeeeccccccceeeccccceeeecccc---Ccee-eecccc----------------
Confidence                  01123456999999999986532         223577887743   1111 111111                


Q ss_pred             CCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        242 DKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       242 ~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                                     .....++++|||++|+.+..  ....|+.
T Consensus       179 ---------------~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         179 ---------------SHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             ---------------SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ---------------cccccccccCCCCEEEEEeCCCceEcccc
Confidence                           14577899999999998754  4444543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.25  E-value=3e-10  Score=100.29  Aligned_cols=157  Identities=13%  Similarity=0.077  Sum_probs=97.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|||||++|++++. +|+|++||+...... ....+...                               ...+
T Consensus        59 ~~v~~~~~sp~g~~latg~~-dg~i~iwd~~~~~~~-~~~~~~~~-------------------------------~~~v  105 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDV-HGNVRIWDTTQTTHI-LKTTIPVF-------------------------------SGPV  105 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEEEESSSTTCC-EEEEEECS-------------------------------SSCE
T ss_pred             CCEEEEEEeCCCCeEecccc-CceEeeeeeeccccc-cccccccc-------------------------------cCcc
Confidence            46789999999999988875 899999999764322 11111111                               1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ..++|+|||++++++++..              ....   .+.+....+....     ..+    .......|+|+|||+
T Consensus       106 ~~v~~s~d~~~l~~~~~~~--------------~~~~---~v~~~~~~~~~~~-----l~~----h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1         106 KDISWDSESKRIAAVGEGR--------------ERFG---HVFLFDTGTSNGN-----LTG----QARAMNSVDFKPSRP  159 (311)
T ss_dssp             EEEEECTTSCEEEEEECCS--------------SCSE---EEEETTTCCBCBC-----CCC----CSSCEEEEEECSSSS
T ss_pred             ccccccccccccccccccc--------------cccc---ccccccccccccc-----ccc----cccccccccccccce
Confidence            8899999999999876511              0011   1111111111111     001    123567899999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      +++++.-.++.|.+||+..   .+.+..+..-.                               +....+.++|||++|+
T Consensus       160 ~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPP---FKFKSTFGEHT-------------------------------KFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             CEEEEEETTSCEEEEETTT---BEEEEEECCCS-------------------------------SCEEEEEECTTSSEEE
T ss_pred             eeecccccccccccccccc---ccccccccccc-------------------------------ccccccccCccccccc
Confidence            8776654689999999853   33333221101                               1468899999999999


Q ss_pred             EEcC--CCCCCC
Q psy11412        273 VSSS--LFSPWD  282 (290)
Q Consensus       273 Van~--~~~~~~  282 (290)
                      +++.  ....|+
T Consensus       206 ~~~~d~~v~~~d  217 (311)
T d1nr0a1         206 STGGDGTIVLYN  217 (311)
T ss_dssp             EEETTSCEEEEE
T ss_pred             cccccccccccc
Confidence            8864  444454

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.2e-10  Score=100.13  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...+..+++++++.++++++. ++.|.+||+..   .+.+.....                                ...
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~-d~~v~i~d~~~---~~~~~~~~~--------------------------------~~~  226 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGL-DNTVRSWDLRE---GRQLQQHDF--------------------------------TSQ  226 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSEEEEEETTT---TEEEEEEEC--------------------------------SSC
T ss_pred             ccccccccccccccccccccc-ccccccccccc---ceeeccccc--------------------------------ccc
Confidence            345778999999999998875 78999999865   233332211                                145


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      +..++|+|++++|+++..               ++ .+..++...   ......          .........++|||||
T Consensus       227 i~~l~~~~~~~~l~~~~~---------------d~-~i~i~d~~~---~~~~~~----------~~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGME---------------SS-NVEVLHVNK---PDKYQL----------HLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEEEEECTTSSEEEEEET---------------TS-CEEEEETTS---SCEEEE----------CCCSSCEEEEEECTTS
T ss_pred             eEEEEEcccccccceecc---------------cc-ccccccccc---cccccc----------cccccccceEEECCCC
Confidence            778999999999998765               12 232233211   111110          0112456789999999


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412        192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI  271 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L  271 (290)
                      ++|+++. .++.|.+||+..   .+.+....-.                                +.+..++|+|||++|
T Consensus       278 ~~l~s~s-~Dg~i~iwd~~~---~~~~~~~~~~--------------------------------~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         278 KWFVSTG-KDNLLNAWRTPY---GASIFQSKES--------------------------------SSVLSCDISVDDKYI  321 (337)
T ss_dssp             SEEEEEE-TTSEEEEEETTT---CCEEEEEECS--------------------------------SCEEEEEECTTSCEE
T ss_pred             CEEEEEe-CCCeEEEEECCC---CCEEEEccCC--------------------------------CCEEEEEEeCCCCEE
Confidence            9999887 689999999854   2333332211                                257889999999999


Q ss_pred             EEEcC--CCCCCC
Q psy11412        272 YVSSS--LFSPWD  282 (290)
Q Consensus       272 ~Van~--~~~~~~  282 (290)
                      ++++.  .+.-||
T Consensus       322 ~t~s~D~~I~vWd  334 (337)
T d1gxra_         322 VTGSGDKKATVYE  334 (337)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEEeCCCeEEEEE
Confidence            98854  445554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=6.4e-10  Score=98.14  Aligned_cols=180  Identities=9%  Similarity=0.034  Sum_probs=106.6

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      +|.++..++....+  ..-...+..++|+|+|+++++++..++.|.+||+..   .+....+...               
T Consensus       129 ~v~~~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~---------------  188 (311)
T d1nr0a1         129 HVFLFDTGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEH---------------  188 (311)
T ss_dssp             EEEETTTCCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCC---------------
T ss_pred             cccccccccccccc--cccccccccccccccceeeecccccccccccccccc---cccccccccc---------------
Confidence            45666655543332  011235789999999998777766689999999865   2332221110               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                      ......++++|+|+++++++..               + .+.+++..+   ...+.........
T Consensus       189 ----------------~~~i~~v~~~p~~~~l~~~~~d---------------~-~v~~~d~~~---~~~~~~~~~~~~~  233 (311)
T d1nr0a1         189 ----------------TKFVHSVRYNPDGSLFASTGGD---------------G-TIVLYNGVD---GTKTGVFEDDSLK  233 (311)
T ss_dssp             ----------------SSCEEEEEECTTSSEEEEEETT---------------S-CEEEEETTT---CCEEEECBCTTSS
T ss_pred             ----------------cccccccccCcccccccccccc---------------c-ccccccccc---ccccccccccccc
Confidence                            1356889999999999987651               1 222222211   0011111000000


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeec
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKG  252 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (290)
                        ..........++|||||++|++++ .++.|.+||+.+   .+.+.+++.+...                         
T Consensus       234 --~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd~~t---~~~~~~l~~~~~~-------------------------  282 (311)
T d1nr0a1         234 --NVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVAT---LKVEKTIPVGTRI-------------------------  282 (311)
T ss_dssp             --SCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT---TEEEEEEECCSSG-------------------------
T ss_pred             --cccccccccccccCCCCCEEEEEe-CCCeEEEEECCC---CcEEEEEECCCCc-------------------------
Confidence              000124578899999999999988 688999999853   5666766654310                         


Q ss_pred             ccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                           ....+.+.+++++|+++..  .+.-||.
T Consensus       283 -----~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         283 -----EDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             -----GGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             -----cceEEEEEecCCEEEEEECCCEEEEEeC
Confidence                 1233556667777887754  5566654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=2.2e-10  Score=102.91  Aligned_cols=176  Identities=12%  Similarity=0.038  Sum_probs=98.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+++|||||++|++++. +++|++||+... .....  +...+                             ....+.
T Consensus        53 ~V~~l~fsp~~~~l~s~s~-D~~i~vWd~~~~-~~~~~--~~~~~-----------------------------~~~~v~   99 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGT-DRNAYVWTLKGR-TWKPT--LVILR-----------------------------INRAAR   99 (371)
T ss_dssp             CEEEEEEETTTTEEEEEET-TSCEEEEEEETT-EEEEE--EECCC-----------------------------CSSCEE
T ss_pred             CEEEEEECCCCCEEEEEEC-CCeEEEEeeccc-ccccc--ccccc-----------------------------cccccc
Confidence            5789999999999988765 889999999652 12211  11110                             014578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|++++|++.+..               + .+..++..............        .........++|+|||++
T Consensus       100 ~i~~~p~~~~l~~~s~d---------------~-~i~i~~~~~~~~~~~~~~~~--------~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_         100 CVRWAPNEKKFAVGSGS---------------R-VISICYFEQENDWWVCKHIK--------KPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             EEEECTTSSEEEEEETT---------------S-SEEEEEEETTTTEEEEEEEC--------TTCCSCEEEEEECTTSSE
T ss_pred             ccccccccccceeeccc---------------C-cceeeeeecccccccccccc--------cccccccccccccccccc
Confidence            89999999999987651               1 12112211100000000000        011235678999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .+++|.+||+..............+.... .+.+               ......-.+....++|+|||++|++
T Consensus       156 l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         156 LAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMP-FGEL---------------MFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             EEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCC-TTCE---------------EEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             eeccc-cCcEEEEEeeccCcccccccccccccccc-ceee---------------eeeccCccCcEEEEEeecccccccc
Confidence            98777 68999999985321111111000000000 0000               0001111134688999999999998


Q ss_pred             EcC--CCCCCCc
Q psy11412        274 SSS--LFSPWDK  283 (290)
Q Consensus       274 an~--~~~~~~~  283 (290)
                      +..  .+.-||.
T Consensus       219 ~~~d~~i~iwd~  230 (371)
T d1k8kc_         219 VSHDSTVCLADA  230 (371)
T ss_dssp             EETTTEEEEEEG
T ss_pred             cccCCcceEEee
Confidence            854  4555653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.18  E-value=1.3e-09  Score=93.39  Aligned_cols=206  Identities=13%  Similarity=0.138  Sum_probs=109.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc-------ccCCCceEEec-CC--------CCcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK-------IQSDSGVTVID-DP--------ELDKQ   97 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~-------~~~~~~~~v~~-~~--------~~~~~   97 (290)
                      .+..++|||||++|++++. +|+|++||+.+....+.   +..++.       ..+.+.+.+.. |.        .....
T Consensus        14 ~V~~l~~s~dg~~l~s~s~-Dg~v~vWd~~~~~~~~~---~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADA-EGHINSWDISTGISNRV---FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEEC---SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred             CcEEEEECCCCCEEEEEcC-CCeEEEEECCCCcEEEE---EcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccc
Confidence            4789999999999998775 89999999975321111   111110       11223332221 11        10000


Q ss_pred             CCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC
Q psy11412         98 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP  177 (290)
Q Consensus        98 ~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~  177 (290)
                      ....  ........+..++|+|+|+.+++...                + .+..++...      ...          .+
T Consensus        90 ~~~~--~~~~~~~~~~~~~~s~~g~~~~~~~~----------------~-~i~~~~~~~------~~~----------~~  134 (299)
T d1nr0a2          90 SSKA--VANKLSSQPLGLAVSADGDIAVAACY----------------K-HIAIYSHGK------LTE----------VP  134 (299)
T ss_dssp             TTSC--CEEECSSCEEEEEECTTSSCEEEEES----------------S-EEEEEETTE------EEE----------EE
T ss_pred             cccc--cccccccccccccccccccccccccc----------------c-ccccccccc------ccc----------cc
Confidence            0000  00111256788999999998877543                1 121121100      000          00


Q ss_pred             CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE---------ee---Ccee---cCCCceEEecCCCCC
Q psy11412        178 ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI---------FL---GGKI---QSDSGVTVIDDPELD  242 (290)
Q Consensus       178 ~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i---------~~---Gg~~---~~~~~v~~~~~~~~~  242 (290)
                      .......++|+|||++|+++. .++.|.+||+.... ...+...         ..   +..+   ..++.|.+++.....
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGAS-VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTE-EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ccccccccccccccccccccc-cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            112345689999999999887 68899999996421 1111111         00   1111   456778888754422


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      .......+.+.  .+....++|+|+|++|+++..  .+.-|+
T Consensus       213 ~~~~~~~~~~h--~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         213 ELAHTNSWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EESCCCCCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccc--ccccccccccccccceEEEcCCCEEEEEE
Confidence            11111111111  124688999999999998854  445554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=1e-10  Score=108.81  Aligned_cols=213  Identities=13%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe--------------EEEEEcCCCCCceeeeEEeecc
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD--------------IRQYDIRDTAHPVLVGQIFLGG   78 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~--------------V~v~dv~d~~~~~~~~~i~~g~   78 (290)
                      .+||....++...+   .|++.+.+++++|||+++|++++.+..              +.++++...  .+.   +.- |
T Consensus       176 t~ID~~tm~V~~QV---~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri--e~a---v~~-G  246 (459)
T d1fwxa2         176 TAVDADKWEVAWQV---LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI--EKA---IAA-G  246 (459)
T ss_dssp             EEEETTTTEEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--HHH---HHH-T
T ss_pred             EEEecCCceEEEEe---eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh--HHh---hhc-C
Confidence            57999998888766   788899999999999999999886432              233332100  000   000 0


Q ss_pred             cccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee
Q psy11412         79 KIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI  158 (290)
Q Consensus        79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~  158 (290)
                      .....+.+.|++-.......   ...-.+.+..|+++.+||||+++|+++.++.++++..+.....   .+  .+-.++ 
T Consensus       247 k~~eingV~VVD~~~~~~~~---v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~---~~--~~~~~~-  317 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSL---FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA---VF--YENADP-  317 (459)
T ss_dssp             CSEEETTEEEEECSGG--CS---SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH---HH--HSCC-G-
T ss_pred             CcEEeCCceeecccccCCcc---eeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhh---hh--cccCCc-
Confidence            01112334454422111111   1112334578999999999999999999988877764321000   00  000010 


Q ss_pred             ecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-------CCceEeeEEeeCceecCCC
Q psy11412        159 QRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-------AHPVLVGQIFLGGKIQSDS  231 (290)
Q Consensus       159 ~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-------~~~~~v~~i~~Gg~~~~~~  231 (290)
                       +..+.    +..     ..+-+|-+-+|+.+| .+|+|.+.+++|.-|++...       .....+..+++-=+.    
T Consensus       318 -~~~~~----~e~-----elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~----  382 (459)
T d1fwxa2         318 -RSAVV----AEP-----ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP----  382 (459)
T ss_dssp             -GGGEE----ECC-----BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE----
T ss_pred             -cccEE----eec-----ccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC----
Confidence             01111    000     113468889999998 79999999999999999421       112355666552100    


Q ss_pred             ceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCC
Q psy11412        232 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP  280 (290)
Q Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~  280 (290)
                                          |..  ..+.+-..+||||+|++-|.+.+-
T Consensus       383 --------------------gh~--~~~~g~t~~~dgk~l~~~nk~skd  409 (459)
T d1fwxa2         383 --------------------GHL--KTVMGETLDATNDWLVCLSKFSKD  409 (459)
T ss_dssp             --------------------EEE--EETTTTSTTCCSSEEEEEESCCTT
T ss_pred             --------------------CCC--ccCcCCcCCCCCCEEEEecccccc
Confidence                                000  012223458999999999986553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=2.6e-10  Score=105.93  Aligned_cols=157  Identities=10%  Similarity=0.028  Sum_probs=95.5

Q ss_pred             EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe-------------------EEEEEcCCCCCceee
Q psy11412         11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD-------------------IRQYDIRDTAHPVLV   71 (290)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~-------------------V~v~dv~d~~~~~~~   71 (290)
                      +-.+||+...++..-+ .++....+|++..++++++.||.+.+...                   +.++|..   +.+..
T Consensus       111 RVAvIdl~~fkt~kIi-~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~---tm~V~  186 (459)
T d1fwxa2         111 RVARVRCDVMKCDAIL-EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD---KWEVA  186 (459)
T ss_dssp             EEEEEETTTTEEEEEE-ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT---TTEEE
T ss_pred             eEEEEECcceeeeEEE-ecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC---CceEE
Confidence            4567888877765544 44678899999999999999999744422                   3445542   34454


Q ss_pred             eEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC---C--------CCccee---
Q psy11412         72 GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL---F--------SPWDKE---  137 (290)
Q Consensus        72 ~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel---~--------~~~d~~---  137 (290)
                      .++.++                                ..+.++.++||||++|+++.-   .        +..|..   
T Consensus       187 ~QV~V~--------------------------------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~  234 (459)
T d1fwxa2         187 WQVLVS--------------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  234 (459)
T ss_dssp             EEEEES--------------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             EEeeeC--------------------------------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEe
Confidence            444443                                468899999999999998742   1        111111   


Q ss_pred             eccc---ccCCCc--eeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        138 IYPD---LVKTDA--AFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       138 ~~~~---~~~~g~--~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ..+.   ..++|.  .+.-+.+++..  ..    +...+. -.+|.+..|.++.+||||+++|+++..+++|+|+|+.
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~--~~----~~~~v~-~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGR--KE----ASSLFT-RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECS--GG------CSSE-EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             chHHhHHhhhcCCcEEeCCceeeccc--cc----CCccee-EEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            0000   001111  11111122210  00    000000 0244556788999999999999999999999999995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=3.3e-10  Score=102.51  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=77.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..+..++|+||| +|++ +..+++|++||+...   +.+..+.....+                       .++  ...+
T Consensus       185 ~~~~~v~~s~dg-~las-gs~Dg~i~iwd~~~~---~~~~~~~~~~~l-----------------------~~h--~~~V  234 (393)
T d1sq9a_         185 QFATSVDISERG-LIAT-GFNNGTVQISELSTL---RPLYNFESQHSM-----------------------INN--SNSI  234 (393)
T ss_dssp             CCCCEEEECTTS-EEEE-ECTTSEEEEEETTTT---EEEEEEECCC--------------------------CC--CCCE
T ss_pred             CcEEEEEECCCC-EEEE-EeCCCcEEEEeeccc---cccccccccccc-----------------------ccc--cceE
Confidence            356789999998 6654 456899999999652   333222111000                       000  1467


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc--cc-CccccC-CCCceeEEEEc
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS--SL-GSWKYP-ARSMVTDILIS  188 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~--~~-~~~~~~-~~~~~~~i~~S  188 (290)
                      +.++|||||++|++.+.....             ..+.++++..   ...+..+...  .. ....+. ....+..|+||
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~-------------~~i~lwd~~~---g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSF-------------GCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTE-------------EEEEEEETTT---CCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             EEcccccccceeeeecCCCCc-------------ceeeeccccc---ceeeeeeccccccccceeeeecccCceeeeccC
Confidence            899999999999987541100             0111111110   1111110000  00 000000 12467889999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI  221 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i  221 (290)
                      |||++|+.+. .+++|.+||+..   .+.+..+
T Consensus       299 pd~~~l~S~s-~D~~v~vWd~~~---g~~~~~l  327 (393)
T d1sq9a_         299 DSGETLCSAG-WDGKLRFWDVKT---KERITTL  327 (393)
T ss_dssp             SSSSEEEEEE-TTSEEEEEETTT---TEEEEEE
T ss_pred             CCCCeeEEEC-CCCEEEEEECCC---CCEEEEE
Confidence            9999999888 689999999953   4555554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=1.5e-09  Score=96.97  Aligned_cols=187  Identities=8%  Similarity=0.031  Sum_probs=104.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeec--------ccccCCCceEEecCCCC--------cC
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG--------GKIQSDSGVTVIDDPEL--------DK   96 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g--------~~~~~~~~~~v~~~~~~--------~~   96 (290)
                      +.|++++|++||..||+++. .+.|..++.+. .....+....-+        ....+.+.+++.+....        ..
T Consensus        71 g~P~Gl~~~~dg~~l~vad~-~~~i~~~~~~g-~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CcceeEEEeCCCCEEEEEEC-CCeEEEEeCCC-cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence            46999999999999999986 45688887642 111111100000        01224567777653110        00


Q ss_pred             CCC--cceeec--------cccCCCceEEEEccCCC----EEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc
Q psy11412         97 QPD--PVIIKG--------RRFTGSSQMFQLSLDGK----RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE  162 (290)
Q Consensus        97 ~~~--~~~~~~--------~~~g~gPr~vafsPdG~----~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~  162 (290)
                      ...  ......        ...-..|.+++|+|+++    +||++....+.+-.+...   .++ .+.        .++.
T Consensus       149 ~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~---~~g-~~~--------~~~~  216 (314)
T d1pjxa_         149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK---GPA-KIE--------NKKV  216 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE---ETT-EEE--------EEEE
T ss_pred             ccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc---Ccc-ccc--------eeeE
Confidence            000  000000        00114688999999886    899986533322211110   011 110        0001


Q ss_pred             ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412        163 MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD  242 (290)
Q Consensus       163 i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~  242 (290)
                      ...++     +   .....|-+|++.+||+ ||+++++.+.|.+||-   .....+..+.+.+.                
T Consensus       217 ~~~~~-----~---~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp---~~g~~~~~i~~p~~----------------  268 (314)
T d1pjxa_         217 WGHIP-----G---THEGGADGMDFDEDNN-LLVANWGSSHIEVFGP---DGGQPKMRIRCPFE----------------  268 (314)
T ss_dssp             EEECC-----C---CSSCEEEEEEEBTTCC-EEEEEETTTEEEEECT---TCBSCSEEEECSSS----------------
T ss_pred             EEEcc-----c---cccccceeeEEecCCc-EEEEEcCCCEEEEEeC---CCCEEEEEEECCCC----------------
Confidence            11101     0   0113577899999997 7999999999999964   23334455554431                


Q ss_pred             CCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412        243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                                     .|..++|.|||++|||+..
T Consensus       269 ---------------~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         269 ---------------KPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             ---------------CEEEEEECTTSSEEEEEET
T ss_pred             ---------------CEEEEEEeCCCCEEEEEEC
Confidence                           6899999999999999965

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=1.4e-09  Score=93.33  Aligned_cols=76  Identities=11%  Similarity=0.132  Sum_probs=48.9

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~S  188 (290)
                      ..+..++|+|++++|++.+.               ++ .+..++...   ...+....       .+.. ......++|+
T Consensus       180 ~~i~~~~~~~~~~~l~~~~~---------------d~-~i~~~~~~~---~~~~~~~~-------~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         180 AEITSVAFSNNGAFLVATDQ---------------SR-KVIPYSVAN---NFELAHTN-------SWTFHTAKVACVSWS  233 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEET---------------TS-CEEEEEGGG---TTEESCCC-------CCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccc---------------cc-ccccccccc---cccccccc-------ccccccccccccccc
Confidence            45788999999999998765               12 233333221   11111100       0111 2456789999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      |||++|+++. .++.|.+||+...
T Consensus       234 ~~~~~l~sgs-~dg~i~iwd~~~~  256 (299)
T d1nr0a2         234 PDNVRLATGS-LDNSVIVWNMNKP  256 (299)
T ss_dssp             TTSSEEEEEE-TTSCEEEEETTCT
T ss_pred             ccccceEEEc-CCCEEEEEECCCC
Confidence            9999999888 6889999999653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.8e-09  Score=91.79  Aligned_cols=146  Identities=14%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+++|+|||++|++++. +|+|.+||+... .++....+...                               .....
T Consensus        99 ~I~~v~~s~dg~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~-------------------------------~~~v~  145 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGE-ASTLSIWDLAAP-TPRIKAELTSS-------------------------------APACY  145 (337)
T ss_dssp             BEEEEEECTTSSEEEEEES-SSEEEEEECCCC---EEEEEEECS-------------------------------SSCEE
T ss_pred             cEEEEEEcCCCCEEEEeec-cccccccccccc-ccccccccccc-------------------------------ccccc
Confidence            5789999999999988875 799999998652 33333322111                               13457


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|++..++++++.               + .+..++...   ......     .    .........++++++|++
T Consensus       146 ~~~~~~~~~~l~s~~~d---------------~-~i~~~~~~~---~~~~~~-----~----~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         146 ALAISPDSKVCFSCCSD---------------G-NIAVWDLHN---QTLVRQ-----F----QGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             EEEECTTSSEEEEEETT---------------S-CEEEEETTT---TEEEEE-----E----CCCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccc---------------c-ccccccccc---cccccc-----c----cccccccccccccccccc
Confidence            78999999999876651               1 122222211   011110     0    001235677999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      ++++. .++.|.+||+..   .+.+......+                                .+..++|+|+|++|++
T Consensus       198 ~~~~~-~d~~v~i~d~~~---~~~~~~~~~~~--------------------------------~i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         198 LWTGG-LDNTVRSWDLRE---GRQLQQHDFTS--------------------------------QIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             EEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEEEEEECTTSSEEEE
T ss_pred             ccccc-cccccccccccc---ceeeccccccc--------------------------------ceEEEEEcccccccce
Confidence            99988 688999999853   34444433222                                5678999999999998


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      +..
T Consensus       242 ~~~  244 (337)
T d1gxra_         242 GME  244 (337)
T ss_dssp             EET
T ss_pred             ecc
Confidence            754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=3e-09  Score=93.63  Aligned_cols=133  Identities=13%  Similarity=0.202  Sum_probs=77.0

Q ss_pred             EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412         12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD   91 (290)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~   91 (290)
                      +..+++...||....   +.+..+.+++++|||+ ||+++...++|..|+-  .+..+...  ..               
T Consensus        10 ~~~~~~~~~~v~~~~---p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p--~g~~~~~~--~~---------------   66 (302)
T d2p4oa1          10 DKPIELAPAKIITSF---PVNTFLENLASAPDGT-IFVTNHEVGEIVSITP--DGNQQIHA--TV---------------   66 (302)
T ss_dssp             TSCBCCCCEEEEEEE---CTTCCEEEEEECTTSC-EEEEETTTTEEEEECT--TCCEEEEE--EC---------------
T ss_pred             cCcccCCcccEEEEC---CCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeC--CCCEEEEE--cC---------------
Confidence            344566666665544   5666899999999998 6788888898877763  22222211  11               


Q ss_pred             CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412         92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL  171 (290)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~  171 (290)
                                       ...|..++|+|||+ ||+++.....               +..++....  ......+.    
T Consensus        67 -----------------~~~~~gla~~~dG~-l~v~~~~~~~---------------~~~~~~~~~--~~~~~~~~----  107 (302)
T d2p4oa1          67 -----------------EGKVSGLAFTSNGD-LVATGWNADS---------------IPVVSLVKS--DGTVETLL----  107 (302)
T ss_dssp             -----------------SSEEEEEEECTTSC-EEEEEECTTS---------------CEEEEEECT--TSCEEEEE----
T ss_pred             -----------------CCCcceEEEcCCCC-eEEEecCCce---------------EEEEEeccc--ccceeecc----
Confidence                             15789999999998 6766532111               111111110  00000000    


Q ss_pred             CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412        172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~  210 (290)
                         ..+....+.++++++||+ +|+++..++.|..+|..
T Consensus       108 ---~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1         108 ---TLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             ---ECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETT
T ss_pred             ---ccCCccccceeEEccCCC-EEeeccccccceeeecc
Confidence               112234567788888885 47777677777666653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=5e-09  Score=89.92  Aligned_cols=153  Identities=12%  Similarity=0.147  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ......+.+++.+++++.. ++.|.+||+.+   .+.+..+...                               .....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~-d~~v~i~d~~~---~~~~~~~~~h-------------------------------~~~i~  230 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGAC-DASAKLWDVRE---GMCRQTFTGH-------------------------------ESDIN  230 (340)
T ss_dssp             CEEEEEECTTSSEEEEEET-TTEEEEEETTT---TEEEEEECCC-------------------------------SSCEE
T ss_pred             eEeeeccccccceeEEeec-CceEEEEECCC---CcEEEEEeCC-------------------------------CCCeE
Confidence            4567788889988877664 88999999865   3333322111                               14568


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++.               ++ .+..++...   ...+.....       .........++|+|||++
T Consensus       231 ~v~~~p~~~~l~s~s~---------------d~-~i~~~~~~~---~~~~~~~~~-------~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         231 AICFFPNGNAFATGSD---------------DA-TCRLFDLRA---DQELMTYSH-------DNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEECC-------TTCCSCEEEEEECSSSCE
T ss_pred             EEEECCCCCEEEEEeC---------------CC-eEEEEeecc---ccccccccc-------ccccCceEEEEECCCCCE
Confidence            8999999999998765               12 222222211   111111000       001234678999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+..   .+.+..+. |.                              .+....++|+|||++|++
T Consensus       285 l~~g~-~dg~i~iwd~~~---~~~~~~~~-~H------------------------------~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         285 LLAGY-DDFNCNVWDALK---ADRAGVLA-GH------------------------------DNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EEEEE-TTSCEEEEETTT---CCEEEEEC-CC------------------------------SSCEEEEEECTTSSCEEE
T ss_pred             EEEEE-CCCEEEEEECCC---CcEEEEEc-CC------------------------------CCCEEEEEEeCCCCEEEE
Confidence            99988 689999999853   34444332 11                              014688999999999998


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      ++.  ...-||
T Consensus       330 ~s~Dg~v~iWd  340 (340)
T d1tbga_         330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EccCCEEEEeC
Confidence            854  444443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.6e-08  Score=89.27  Aligned_cols=191  Identities=18%  Similarity=0.144  Sum_probs=102.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..++|||||++|+++.  +++|++||+.+..   .+..+.........       ........      ........+
T Consensus        64 ~V~~l~fs~dg~~lasg~--d~~i~iW~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~V~  125 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC--NKTTQVYRVSDGS---LVARLSDDSAANKD-------PENLNTSS------SPSSDLYIR  125 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC--BSCEEEEETTTCC---EEEEECC------------------------------CCCCBEE
T ss_pred             cEEEEEECCCCCEEEEEe--CCeEEEEEecccc---eEeeeccccccccc-------cccccccc------ccCCCCCEE
Confidence            567899999999998753  7899999997632   22222111000000       00000000      000013578


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|||||++|+++++               ++ .+..++...   .+.+...     .+    .......+.+++++..
T Consensus       126 ~l~~s~~~~~l~s~~~---------------dg-~v~i~~~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~~  177 (388)
T d1erja_         126 SVCFSPDGKFLATGAE---------------DR-LIRIWDIEN---RKIVMIL-----QG----HEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             EEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEE-----CC----CSSCEEEEEECTTSSE
T ss_pred             EEEECCCCCcceeccc---------------cc-ccccccccc---ccccccc-----cc----cccccccccccccccc
Confidence            8999999999998765               22 222232211   1111100     00    1235677999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEe------------eCce-e---cCCCceEEecCCCCCC----CCCcceeecc
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIF------------LGGK-I---QSDSGVTVIDDPELDK----QPDPVIIKGR  253 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~------------~Gg~-~---~~~~~v~~~~~~~~~~----~~~~~~~~~~  253 (290)
                      ++++. .++.|.+||+...   ..+....            ..+. +   ..++.+.+++......    .+......+.
T Consensus       178 ~~~~~-~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         178 LVSGS-GDRTVRIWDLRTG---QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             EEEEE-TTSEEEEEETTTT---EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             ccccc-cceeeeeeecccc---ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence            99888 6889999998532   1111110            0111 1   4567788887654220    0000000111


Q ss_pred             cccCCcceEEEccCCCEEEEEcC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~  276 (290)
                        .+....++|+|||++|++++.
T Consensus       254 --~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         254 --KDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             --SSCEEEEEECTTSSEEEEEET
T ss_pred             --CCCEEEEEECCCCCEEEEEEC
Confidence              124688999999999998864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=3.3e-08  Score=82.99  Aligned_cols=145  Identities=14%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+..|+|+|||++|+++.. +|+|++||+.+..   .+..+...                               ...+.
T Consensus        19 ~I~~l~~sp~~~~l~s~s~-Dg~i~iWd~~~~~---~~~~~~~h-------------------------------~~~V~   63 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASE-DATIKVWDYETGD---FERTLKGH-------------------------------TDSVQ   63 (317)
T ss_dssp             CEEEEEECSSSSEEEEEES-SSCEEEEETTTCC---CCEEECCC-------------------------------SSCEE
T ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCC---EEEEEeCC-------------------------------CCcEE
Confidence            5789999999999988775 8999999997632   22222111                               14678


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|++..++......                ....++...   ......     .    .........+.++|++++
T Consensus        64 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~---~~~~~~-----~----~~~~~~~~~~~~~~~~~~  115 (317)
T d1vyhc1          64 DISFDHSGKLLASCSADM----------------TIKLWDFQG---FECIRT-----M----HGHDHNVSSVSIMPNGDH  115 (317)
T ss_dssp             EEEECTTSSEEEEEETTS----------------CCCEEETTS---SCEEEC-----C----CCCSSCEEEEEECSSSSE
T ss_pred             EEeeeccccccccccccc----------------ccccccccc---cccccc-----c----ccccccceeeeccCCCce
Confidence            899999999998765411                111011100   000000     0    001234567899999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |++.. .++.+.+||+..   ...+..+..-.                               .....++++|||++|++
T Consensus       116 ~~~~~-~d~~~~~~~~~~---~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1         116 IVSAS-RDKTIKMWEVQT---GYCVKTFTGHR-------------------------------EWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             EEEEE-TTSEEEEEETTT---CCEEEEEECCS-------------------------------SCEEEEEECTTSSEEEE
T ss_pred             EEeec-cCcceeEeeccc---ceeeeEEccCC-------------------------------CcceeeecccCCCEEEE
Confidence            98877 688999999854   23333322111                               14677899999999988


Q ss_pred             EcC
Q psy11412        274 SSS  276 (290)
Q Consensus       274 an~  276 (290)
                      +..
T Consensus       161 ~~~  163 (317)
T d1vyhc1         161 CSN  163 (317)
T ss_dssp             EET
T ss_pred             EeC
Confidence            754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=3.9e-08  Score=87.43  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCC
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT  212 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~  212 (290)
                      ..|.+|+|||||+.||+++...+.|..||+...
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            357789999999999999988999999999643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=1.8e-08  Score=88.44  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .+++.|.+++|+|||+ ||++++.++.+.+++...
T Consensus        65 ~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEEC
T ss_pred             cCCCCcceEEEcCCCC-eEEEecCCceEEEEEecc
Confidence            3677899999999998 677877788998888754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=2.7e-08  Score=87.74  Aligned_cols=175  Identities=13%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             eEEEEE-cCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         35 VTDILI-SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        35 p~~va~-SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      ...+.+ .+|+++|++++. ++.|.+|++....   .+..+.....               ...       +.  .....
T Consensus       207 ~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~---~~~~~~~~~~---------------~~~-------~h--~~~v~  258 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSL-DRAVRVWDSETGF---LVERLDSENE---------------SGT-------GH--KDSVY  258 (388)
T ss_dssp             EEEEEECSTTCCEEEEEET-TSCEEEEETTTCC---EEEEEC---------------------C-------CC--SSCEE
T ss_pred             cccccccCCCCCeEEEEcC-CCeEEEeecccCc---cceeeccccc---------------ccc-------CC--CCCEE
Confidence            344444 458888887765 7899999987532   2221111000               000       00  13568


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++|+|+|++|++++..               + .+..++...............................++++|||++
T Consensus       259 ~l~~s~~~~~l~s~~~d---------------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  322 (388)
T d1erja_         259 SVVFTRDGQSVVSGSLD---------------R-SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY  322 (388)
T ss_dssp             EEEECTTSSEEEEEETT---------------S-EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE
T ss_pred             EEEECCCCCEEEEEECC---------------C-cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE
Confidence            89999999999987651               1 2222332211000000000000000000001235678999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412        194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV  273 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V  273 (290)
                      |+++. .++.|.+||+.+   .+.+.++. |.    .+.|.-+.                    ......|+|||++|++
T Consensus       323 l~sg~-~dg~i~vwd~~~---~~~~~~l~-~H----~~~V~~~~--------------------~~~~~~~spd~~~l~s  373 (388)
T d1erja_         323 ILSGS-KDRGVLFWDKKS---GNPLLMLQ-GH----RNSVISVA--------------------VANGSSLGPEYNVFAT  373 (388)
T ss_dssp             EEEEE-TTSEEEEEETTT---CCEEEEEE-CC----SSCEEEEE--------------------ECSSCTTCTTCEEEEE
T ss_pred             EEEEe-CCCEEEEEECCC---CcEEEEEe-CC----CCCEEEEE--------------------EecCcccCCCCCEEEE
Confidence            99988 689999999854   34444442 11    01111110                    1123457899999998


Q ss_pred             EcC--CCCCCC
Q psy11412        274 SSS--LFSPWD  282 (290)
Q Consensus       274 an~--~~~~~~  282 (290)
                      +..  ...-|+
T Consensus       374 ~s~Dg~I~iW~  384 (388)
T d1erja_         374 GSGDCKARIWK  384 (388)
T ss_dssp             EETTSEEEEEE
T ss_pred             EeCCCEEEEEe
Confidence            854  444554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.85  E-value=8.9e-08  Score=85.00  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=73.0

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|++|+|+|||++||+++...+.+.++.+..   ++........ .     ...          .......|-+|++.+
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~---~g~~~~~~~~-~-----~~~----------~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALED---DGVTIQPFGA-T-----IPY----------YFTGHEGPDSCCIDS  237 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT---TSSSEEEEEE-E-----EEE----------ECCSSSEEEEEEEBT
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcC---CCceeccccc-e-----eee----------ccCCccceeeeeEcC
Confidence            57999999999999999976444443332211   1211100000 0     000          011123577899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK  269 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~  269 (290)
                      ||+ ||+++++.+.|.+||-    ..+++.+|.+.++-.                       +.  ...+..++|.|++.
T Consensus       238 ~G~-l~Va~~~~g~V~~~~p----~G~~l~~i~~P~~~~-----------------------~~--~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         238 DDN-LYVAMYGQGRVLVFNK----RGYPIGQILIPGRDE-----------------------GH--MLRSTHPQFIPGTN  287 (319)
T ss_dssp             TCC-EEEEEETTTEEEEECT----TSCEEEEEECTTGGG-----------------------TC--SCBCCEEEECTTSC
T ss_pred             CCC-EEEEEcCCCEEEEECC----CCcEEEEEeCCCcCC-----------------------Cc--CceeeeEEEeCCCC
Confidence            997 8999999999999863    246777777644200                       00  01467889999999


Q ss_pred             EEEEEcC
Q psy11412        270 RIYVSSS  276 (290)
Q Consensus       270 ~L~Van~  276 (290)
                      +||++..
T Consensus       288 ~~~~t~~  294 (319)
T d2dg1a1         288 QLIICSN  294 (319)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcC
Confidence            9988753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=1.2e-08  Score=87.58  Aligned_cols=132  Identities=9%  Similarity=0.052  Sum_probs=82.2

Q ss_pred             EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412         13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP   92 (290)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~   92 (290)
                      ++.|+...+.....  ..-...+..++++|+|++|++++. +|.|.+|++...   .........               
T Consensus       209 ~i~d~~~~~~~~~~--~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~~~~~~~---~~~~~~~~~---------------  267 (340)
T d1tbga_         209 KLWDVREGMCRQTF--TGHESDINAICFFPNGNAFATGSD-DATCRLFDLRAD---QELMTYSHD---------------  267 (340)
T ss_dssp             EEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTT---EEEEEECCT---------------
T ss_pred             EEEECCCCcEEEEE--eCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeeccc---ccccccccc---------------
Confidence            34455554433322  011335789999999999998875 899999998652   222211110               


Q ss_pred             CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412         93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG  172 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~  172 (290)
                                    ........++|+|+|++|++.++               ++ .+.+++...   .+.+..+.     
T Consensus       268 --------------~~~~~i~~~~~s~~~~~l~~g~~---------------dg-~i~iwd~~~---~~~~~~~~-----  309 (340)
T d1tbga_         268 --------------NIICGITSVSFSKSGRLLLAGYD---------------DF-NCNVWDALK---ADRAGVLA-----  309 (340)
T ss_dssp             --------------TCCSCEEEEEECSSSCEEEEEET---------------TS-CEEEEETTT---CCEEEEEC-----
T ss_pred             --------------cccCceEEEEECCCCCEEEEEEC---------------CC-EEEEEECCC---CcEEEEEc-----
Confidence                          00145678999999999998765               22 333343322   11122111     


Q ss_pred             ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEE
Q psy11412        173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYD  208 (290)
Q Consensus       173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~D  208 (290)
                      +    ....+..|+|||||++|+++. .+++|.+||
T Consensus       310 ~----H~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd  340 (340)
T d1tbga_         310 G----HDNRVSCLGVTDDGMAVATGS-WDSFLKIWN  340 (340)
T ss_dssp             C----CSSCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred             C----CCCCEEEEEEeCCCCEEEEEc-cCCEEEEeC
Confidence            1    124577899999999999887 689999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=9e-08  Score=80.22  Aligned_cols=68  Identities=9%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      .....++++|||++|+++. .++.|.+||+.+   .+.+..+.. .                              .+..
T Consensus       248 ~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~-h------------------------------~~~V  292 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCA-DDKTLRVWDYKN---KRCMKTLNA-H------------------------------EHFV  292 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEE-TTTEEEEECCTT---SCCCEEEEC-C------------------------------SSCE
T ss_pred             CCEEEEEECCCCCEEEEEE-CCCeEEEEECCC---CcEEEEEcC-C------------------------------CCCE
Confidence            3567899999999999888 689999999864   233333321 1                              0146


Q ss_pred             ceEEEccCCCEEEEEcC--CCCCCC
Q psy11412        260 QMFQLSLDGKRIYVSSS--LFSPWD  282 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~--~~~~~~  282 (290)
                      ..++|+|||++|+++..  .+.-||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            88999999999998855  344443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=1.3e-07  Score=81.02  Aligned_cols=145  Identities=8%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|++++++++|+ ||+++...+.+..++.... .....   ...                              .-..|
T Consensus        98 ~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~-~~~~~---~~~------------------------------~~~~p  142 (260)
T d1rwia_          98 NYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSK-TQTVL---PFT------------------------------GLNDP  142 (260)
T ss_dssp             CSEEEEEECTTCC-EEEEEGGGTEEEEECTTCS-SCEEC---CCC------------------------------SCCSC
T ss_pred             eecccccccccce-eEeeccccccccccccccc-eeeee---eec------------------------------ccCCc
Confidence            4799999999997 6778877777776664321 11111   000                              01578


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.++++|+|+ +|+++....               .+..++...   .. ....        .......|.+|+++++|+
T Consensus       143 ~~i~~~~~g~-~~v~~~~~~---------------~i~~~d~~~---~~-~~~~--------~~~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         143 DGVAVDNSGN-VYVTDTDNN---------------RVVKLEAES---NN-QVVL--------PFTDITAPWGIAVDEAGT  194 (260)
T ss_dssp             CEEEECTTCC-EEEEEGGGT---------------EEEEECTTT---CC-EEEC--------CCSSCCSEEEEEECTTCC
T ss_pred             ceeeecCCCC-Eeeeccccc---------------ccccccccc---ce-eeee--------eccccCCCccceeeeeee
Confidence            9999999998 566643111               111111100   00 0000        001124688999999996


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                       ||++++..+.|..++... .....   +...+                              -..|.+|++++||+ ||
T Consensus       195 -l~vsd~~~~~i~~~~~~~-~~~~~---~~~~~------------------------------~~~P~~i~~d~~g~-l~  238 (260)
T d1rwia_         195 -VYVTEHNTNQVVKLLAGS-TTSTV---LPFTG------------------------------LNTPLAVAVDSDRT-VY  238 (260)
T ss_dssp             -EEEEETTTTEEEEECTTC-SCCEE---CCCCS------------------------------CCCEEEEEECTTCC-EE
T ss_pred             -eeeeecCCCEEEEEeCCC-CeEEE---EccCC------------------------------CCCeEEEEEeCCCC-EE
Confidence             799999889888875421 11111   11111                              02699999999996 78


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      ||+.
T Consensus       239 vad~  242 (260)
T d1rwia_         239 VADR  242 (260)
T ss_dssp             EEEG
T ss_pred             EEEC
Confidence            8854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=8e-08  Score=82.47  Aligned_cols=144  Identities=8%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|+++++++||+ ||+++...+.|.+++-   .....+.  ..+                              ....|
T Consensus        57 ~~p~gvav~~~g~-i~v~d~~~~~i~~~~~---~~~~~~~--~~~------------------------------~~~~p  100 (260)
T d1rwia_          57 YQPQGLAVDGAGT-VYVTDFNNRVVTLAAG---SNNQTVL--PFD------------------------------GLNYP  100 (260)
T ss_dssp             CSCCCEEECTTCC-EEEEETTTEEEEECTT---CSCCEEC--CCC------------------------------SCCSE
T ss_pred             cCceEEEEcCCCC-EEEeeeeeceeeeeee---ccceeee--eee------------------------------eeeec
Confidence            3799999999987 7899987666654432   2122111  011                              12579


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      +.|+++++|+ +|+++....               .+..++...    .......        ...-..|.+|+++|+|+
T Consensus       101 ~~iavd~~g~-i~v~d~~~~---------------~~~~~~~~~----~~~~~~~--------~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_         101 EGLAVDTQGA-VYVADRGNN---------------RVVKLAAGS----KTQTVLP--------FTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             EEEEECTTCC-EEEEEGGGT---------------EEEEECTTC----SSCEECC--------CCSCCSCCEEEECTTCC
T ss_pred             ccccccccce-eEeeccccc---------------ccccccccc----ceeeeee--------ecccCCcceeeecCCCC
Confidence            9999999997 566654111               111111000    0000000        00113567899999998


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                       +|++++.++.|..||...  .....  +....                              .++|..++++++|+ ||
T Consensus       153 -~~v~~~~~~~i~~~d~~~--~~~~~--~~~~~------------------------------~~~p~gi~~d~~g~-l~  196 (260)
T d1rwia_         153 -VYVTDTDNNRVVKLEAES--NNQVV--LPFTD------------------------------ITAPWGIAVDEAGT-VY  196 (260)
T ss_dssp             -EEEEEGGGTEEEEECTTT--CCEEE--CCCSS------------------------------CCSEEEEEECTTCC-EE
T ss_pred             -Eeeecccccccccccccc--ceeee--eeccc------------------------------cCCCccceeeeeee-ee
Confidence             688887888899887632  11111  11111                              12799999999986 67


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      |++.
T Consensus       197 vsd~  200 (260)
T d1rwia_         197 VTEH  200 (260)
T ss_dssp             EEET
T ss_pred             eeec
Confidence            7765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=2.3e-07  Score=81.31  Aligned_cols=124  Identities=12%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             ceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         34 MVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        34 ~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      .+..++|+|  +|++|++++. +|+|++||+........... ......                       ..  ....
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~-Dg~i~iWd~~~~~~~~~~~~-~~~~~~-----------------------~~--~~~~  117 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDE-SGKVIVWGWTFDKESNSVEV-NVKSEF-----------------------QV--LAGP  117 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEET-TSEEEEEEEEEEGGGTEEEE-EEEEEE-----------------------EC--CSSC
T ss_pred             CEEEEEEeeCCCCCEEEEEeC-CCCEEEeeecCCcceeeeec-cccccc-----------------------cc--ccCc
Confidence            477899998  6788887764 89999999865322222111 000000                       00  0134


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      ...++|+|+|+++.++....              ......++...   .+.+..     +.+    .......++|+|++
T Consensus       118 v~~v~~s~~~~~l~~~~~~~--------------~~~~~~~~~~~---~~~~~~-----~~~----h~~~v~~~~~~~~~  171 (325)
T d1pgua1         118 ISDISWDFEGRRLCVVGEGR--------------DNFGVFISWDS---GNSLGE-----VSG----HSQRINACHLKQSR  171 (325)
T ss_dssp             EEEEEECTTSSEEEEEECCS--------------SCSEEEEETTT---CCEEEE-----CCS----CSSCEEEEEECSSS
T ss_pred             EEEEEECCCCCccceeeccc--------------cceEEEEeecc---ccccee-----eee----cccccccccccccc
Confidence            67899999999998875411              11111111110   111111     001    12356779999999


Q ss_pred             CEEEEEeCCCCcEEEEEec
Q psy11412        192 RYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~  210 (290)
                      .+++++.-.++.|.+||+.
T Consensus       172 ~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             SCEEEEEETTTEEEEEETT
T ss_pred             cceEEEeeccccccccccc
Confidence            8765544368999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.66  E-value=7.5e-07  Score=77.00  Aligned_cols=149  Identities=8%  Similarity=0.030  Sum_probs=89.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412         32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS  111 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g  111 (290)
                      ...|++++++++|+. |+++...+.+.+++-+    .+.+..+....                             ....
T Consensus       113 ~~~p~~~avd~~G~i-~v~~~~~~~~~~~~~~----g~~~~~~g~~~-----------------------------~~~~  158 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRI-IVVECKVMRVIIFDQN----GNVLHKFGCSK-----------------------------HLEF  158 (279)
T ss_dssp             CSCEEEEEECTTSCE-EEEETTTTEEEEECTT----SCEEEEEECTT-----------------------------TCSS
T ss_pred             ccccceeccccCCcE-EEEeeccceeeEeccC----Cceeecccccc-----------------------------cccc
Confidence            347899999999974 4566667788887642    23333221110                             0157


Q ss_pred             ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412        112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD  191 (290)
Q Consensus       112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG  191 (290)
                      |..++++++|+ +|+++...+.+-+  +.   .+|..+              .++..   .+    ....|.+|+++++|
T Consensus       159 ~~~i~~d~~g~-i~v~d~~~~~V~~--~d---~~G~~~--------------~~~g~---~g----~~~~P~giavD~~G  211 (279)
T d1q7fa_         159 PNGVVVNDKQE-IFISDNRAHCVKV--FN---YEGQYL--------------RQIGG---EG----ITNYPIGVGINSNG  211 (279)
T ss_dssp             EEEEEECSSSE-EEEEEGGGTEEEE--EE---TTCCEE--------------EEESC---TT----TSCSEEEEEECTTC
T ss_pred             cceeeecccee-EEeeeccccceee--ee---cCCcee--------------eeecc---cc----cccCCcccccccCC
Confidence            89999999985 7877652222211  11   122211              11000   00    12468899999999


Q ss_pred             CEEEEEeCCCC-cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412        192 RYLYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR  270 (290)
Q Consensus       192 r~Lyvs~r~~~-~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~  270 (290)
                      + +|+++..++ .|.+|+-    ..+.+.++..+..                             ...|+.++++|||+ 
T Consensus       212 ~-i~Vad~~~~~~v~~f~~----~G~~~~~~~~~~~-----------------------------~~~p~~vav~~dG~-  256 (279)
T d1q7fa_         212 E-ILIADNHNNFNLTIFTQ----DGQLISALESKVK-----------------------------HAQCFDVALMDDGS-  256 (279)
T ss_dssp             C-EEEEECSSSCEEEEECT----TSCEEEEEEESSC-----------------------------CSCEEEEEEETTTE-
T ss_pred             e-EEEEECCCCcEEEEECC----CCCEEEEEeCCCC-----------------------------CCCEeEEEEeCCCc-
Confidence            8 788886544 6888863    2455566555432                             12699999999995 


Q ss_pred             EEEEcC
Q psy11412        271 IYVSSS  276 (290)
Q Consensus       271 L~Van~  276 (290)
                      |||++.
T Consensus       257 l~V~~~  262 (279)
T d1q7fa_         257 VVLASK  262 (279)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            788864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=9.8e-07  Score=76.21  Aligned_cols=62  Identities=11%  Similarity=0.187  Sum_probs=43.7

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  259 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P  259 (290)
                      ..+..|+++++|+ +|++++..+.|.+||..    .+.+.++...+.                             ..+|
T Consensus       157 ~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~----G~~~~~~g~~g~-----------------------------~~~P  202 (279)
T d1q7fa_         157 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYE----GQYLRQIGGEGI-----------------------------TNYP  202 (279)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETT----CCEEEEESCTTT-----------------------------SCSE
T ss_pred             cccceeeecccee-EEeeeccccceeeeecC----Cceeeeeccccc-----------------------------ccCC
Confidence            4578899999995 78888888999999863    234444422121                             1268


Q ss_pred             ceEEEccCCCEEEEEcC
Q psy11412        260 QMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       260 ~~~a~sPDG~~L~Van~  276 (290)
                      ++|+++|+|+ ||||+.
T Consensus       203 ~giavD~~G~-i~Vad~  218 (279)
T d1q7fa_         203 IGVGINSNGE-ILIADN  218 (279)
T ss_dssp             EEEEECTTCC-EEEEEC
T ss_pred             cccccccCCe-EEEEEC
Confidence            8899999997 777754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.62  E-value=2.9e-07  Score=81.59  Aligned_cols=125  Identities=10%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCC----EEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412         34 MVTDILISLDDR----YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  109 (290)
Q Consensus        34 ~p~~va~SpDGr----~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g  109 (290)
                      .|++++++||+.    +||+++...+.|..|++...+..... .+...-                   +      . ...
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-~~~~~~-------------------~------~-~~~  225 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-KVWGHI-------------------P------G-THE  225 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEEC-------------------C------C-CSS
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-eEEEEc-------------------c------c-ccc
Confidence            688999999876    89999999999999998643322211 111100                   0      0 001


Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL  189 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp  189 (290)
                      ..|.+|+++.+|+ |||++-..+               .+.+++..   ....+..+        ..| ...++.++|.|
T Consensus       226 ~~pdGiavD~~Gn-lyVa~~~~g---------------~I~~~dp~---~g~~~~~i--------~~p-~~~~t~~afg~  277 (314)
T d1pjxa_         226 GGADGMDFDEDNN-LLVANWGSS---------------HIEVFGPD---GGQPKMRI--------RCP-FEKPSNLHFKP  277 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEEEETTT---------------EEEEECTT---CBSCSEEE--------ECS-SSCEEEEEECT
T ss_pred             ccceeeEEecCCc-EEEEEcCCC---------------EEEEEeCC---CCEEEEEE--------ECC-CCCEEEEEEeC
Confidence            4689999999997 788764222               22212110   00111100        011 24678899999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCC
Q psy11412        190 DDRYLYTSNWMHGDIRQYDIRDTA  213 (290)
Q Consensus       190 DGr~Lyvs~r~~~~V~v~Dv~d~~  213 (290)
                      ||+.||+++..+++|..+++..++
T Consensus       278 d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         278 QTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCCEEEEEECCCCcEEEEECCCCC
Confidence            999999999888999988875544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=6.1e-07  Score=78.47  Aligned_cols=119  Identities=13%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         34 MVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      .+..+++++||++|+++..+ ++.+.+|+.+..   +.+..+...                               ....
T Consensus       117 ~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h-------------------------------~~~v  162 (325)
T d1pgua1         117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGH-------------------------------SQRI  162 (325)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSC-------------------------------SSCE
T ss_pred             cEEEEEECCCCCccceeeccccceEEEEeeccc---ccceeeeec-------------------------------cccc
Confidence            46789999999999877543 567899998642   233222110                               1356


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC-C
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD-D  191 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD-G  191 (290)
                      .+++|+|++++++++...              ++ .+..++...........   .  ..    ........++|+|| |
T Consensus       163 ~~~~~~~~~~~~~~~~~~--------------d~-~v~~~d~~~~~~~~~~~---~--~~----~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGD--------------DG-SVVFYQGPPFKFSASDR---T--HH----KQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             EEEEECSSSSCEEEEEET--------------TT-EEEEEETTTBEEEEEEC---S--SS----CTTCCEEEEEECSTTC
T ss_pred             ccccccccccceEEEeec--------------cc-ccccccccccccceecc---c--cc----CCCCccEEeeeccccc
Confidence            789999999876654431              12 23223321110000011   0  00    01235678999998 5


Q ss_pred             CEEEEEeCCCCcEEEEEecC
Q psy11412        192 RYLYTSNWMHGDIRQYDIRD  211 (290)
Q Consensus       192 r~Lyvs~r~~~~V~v~Dv~d  211 (290)
                      ++|+++. .++.|.+||+..
T Consensus       219 ~~l~s~~-~d~~i~iwd~~~  237 (325)
T d1pgua1         219 EFVITVG-SDRKISCFDGKS  237 (325)
T ss_dssp             CEEEEEE-TTCCEEEEETTT
T ss_pred             eeccccc-cccceeeeeecc
Confidence            6666666 689999999853

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=2.1e-06  Score=76.66  Aligned_cols=82  Identities=10%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             CceeEEEEccCCCEEEEEeCCCC---cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412        180 SMVTDILISLDDRYLYTSNWMHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT  256 (290)
Q Consensus       180 ~~~~~i~~SpDGr~Lyvs~r~~~---~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
                      ..+..|+|||||++|+++. .++   .|.+||+..   ...+..+.....                .......+.|..  
T Consensus       232 ~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~---g~~~~~l~~~~~----------------~~~~~~~~~gH~--  289 (393)
T d1sq9a_         232 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEF---GERIGSLSVPTH----------------SSQASLGEFAHS--  289 (393)
T ss_dssp             CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTT---CCEEEEECBC------------------------CCBSBS--
T ss_pred             ceEEEcccccccceeeeec-CCCCcceeeeccccc---ceeeeeeccccc----------------cccceeeeeccc--
Confidence            4678899999999999876 343   489999854   233333322110                000000111111  


Q ss_pred             CCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS--LFSPWDK  283 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~--~~~~~~~  283 (290)
                      +....++|+|||++|+.++.  ...-||.
T Consensus       290 ~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         290 SWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            24788999999999999865  6777764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=4.2e-06  Score=72.32  Aligned_cols=119  Identities=7%  Similarity=-0.050  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412         33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS  112 (290)
Q Consensus        33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP  112 (290)
                      ..|.++|++.-++.||+++...+.|.+.+++.. ..+.+.   ..+                              -..|
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~-~~~~l~---~~~------------------------------l~~p  124 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLF---DTG------------------------------LVNP  124 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE---CSS------------------------------CSSE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCc-eEEEEe---ccc------------------------------ccCC
Confidence            379999999999999999998999999998542 222221   110                              1479


Q ss_pred             eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      ++++++|...++|.++.....             ..+...+. +-..+..+.           ...-..|.+|++++.++
T Consensus       125 ~~l~vdp~~g~ly~t~~~~~~-------------~~I~r~~~-dG~~~~~i~-----------~~~~~~P~glaiD~~~~  179 (263)
T d1npea_         125 RGIVTDPVRGNLYWTDWNRDN-------------PKIETSHM-DGTNRRILA-----------QDNLGLPNGLTFDAFSS  179 (263)
T ss_dssp             EEEEEETTTTEEEEEECCSSS-------------CEEEEEET-TSCCCEEEE-----------CTTCSCEEEEEEETTTT
T ss_pred             cEEEEecccCcEEEeecCCCC-------------cEEEEecC-CCCCceeee-----------eecccccceEEEeecCc
Confidence            999999999999998652111             01100000 000000010           00113578899999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +||.++.+.+.|...|+.
T Consensus       180 ~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         180 QLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEECC
Confidence            999999999999988874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.4e-06  Score=72.23  Aligned_cols=116  Identities=9%  Similarity=0.034  Sum_probs=77.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .|.++|+++-++.||+++.+.++|.+++++.. ....+  + ..                              ....|+
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-~~~~~--~-~~------------------------------~~~~P~  123 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTL--F-RE------------------------------NGSKPR  123 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEE--E-EC------------------------------TTCCEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCc-eEEEE--E-cC------------------------------CCCCcc
Confidence            68899999999999999999999999998532 11111  1 11                              015799


Q ss_pred             EEEEccCCCEEEEEcCCCC-CcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412        114 MFQLSLDGKRIYVSSSLFS-PWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR  192 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~-~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr  192 (290)
                      .++++|...+||+++.... .+.....     +|...           ..+.  .         ..-..|.+|++++.++
T Consensus       124 ~l~vd~~~g~ly~~~~~~~~~I~r~~~-----dGs~~-----------~~l~--~---------~~~~~p~gl~iD~~~~  176 (266)
T d1ijqa1         124 AIVVDPVHGFMYWTDWGTPAKIKKGGL-----NGVDI-----------YSLV--T---------ENIQWPNGITLDLLSG  176 (266)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEET-----TSCCE-----------EEEE--C---------SSCSCEEEEEEETTTT
T ss_pred             eEEEEcccCeEEEeccCCCcceeEecc-----CCCce-----------eccc--c---------cccceeeEEEeecccc
Confidence            9999999999999864211 1111000     11110           0000  0         0113578899999999


Q ss_pred             EEEEEeCCCCcEEEEEec
Q psy11412        193 YLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       193 ~Lyvs~r~~~~V~v~Dv~  210 (290)
                      +||.++...+.|...++.
T Consensus       177 ~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         177 RLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEecCCcCEEEEEECC
Confidence            999999888999998884

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7e-06  Score=70.89  Aligned_cols=152  Identities=11%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.++++++.+++||.++...+.|...++...........+...                              .-..|.
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~------------------------------~~~~p~   80 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------------------------DIQAPD   80 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------------------------------SCSCCC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC------------------------------CCCCcc
Confidence            67899999999999999998888887776431111111111010                              014688


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      +||+.+-++.||+++...+.+.++..     +|....           .+.           ......|.+|+++|..++
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~-----~g~~~~-----------~~~-----------~~~~~~P~~l~vd~~~g~  133 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKRK-----------TLF-----------RENGSKPRAIVVDPVHGF  133 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-----TSSSEE-----------EEE-----------ECTTCCEEEEEEETTTTE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEec-----CCceEE-----------EEE-----------cCCCCCcceEEEEcccCe
Confidence            99999999999999874333322211     111100           000           001246889999999999


Q ss_pred             EEEEeCCCC-cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        194 LYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       194 Lyvs~r~~~-~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      ||.++++.. .|...+++ ....+.+.  ..+.                               ..|.++++++.+++||
T Consensus       134 ly~~~~~~~~~I~r~~~d-Gs~~~~l~--~~~~-------------------------------~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         134 MYWTDWGTPAKIKKGGLN-GVDIYSLV--TENI-------------------------------QWPNGITLDLLSGRLY  179 (266)
T ss_dssp             EEEEECSSSCEEEEEETT-SCCEEEEE--CSSC-------------------------------SCEEEEEEETTTTEEE
T ss_pred             EEEeccCCCcceeEeccC-CCceeccc--cccc-------------------------------ceeeEEEeeccccEEE
Confidence            999997653 56555542 11111111  1111                               2699999999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      +++.
T Consensus       180 w~d~  183 (266)
T d1ijqa1         180 WVDS  183 (266)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            9976

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=8.7e-07  Score=74.90  Aligned_cols=20  Identities=10%  Similarity=0.081  Sum_probs=16.8

Q ss_pred             CCceEEEEccCCCEEEEEcC
Q psy11412        110 GSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~ne  129 (290)
                      ..+..++|||||++|++.+.
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEeccCccccccccc
Confidence            35678999999999998765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.5e-06  Score=72.01  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      ..+++++++++++. .+++|.+||+..   .+.+.++.....                        .+.  .+....++|
T Consensus       264 ~~~~~~~~~~~s~s-~Dg~i~iwd~~t---g~~i~~~~~~~~------------------------~~~--~~~v~~v~~  313 (342)
T d2ovrb2         264 TCLQFNKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLES------------------------GGS--GGVVWRIRA  313 (342)
T ss_dssp             EEEEECSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECTT------------------------GGG--TCEEEEEEE
T ss_pred             eecccCCCeeEEEc-CCCEEEEEECCC---CCEEEEEecccC------------------------CCC--CCCEEEEEE
Confidence            45667788888887 689999999954   345555543210                        000  113678999


Q ss_pred             ccCCCEEEEEcC
Q psy11412        265 SLDGKRIYVSSS  276 (290)
Q Consensus       265 sPDG~~L~Van~  276 (290)
                      +|||+.|++++.
T Consensus       314 s~~~~~la~g~~  325 (342)
T d2ovrb2         314 SNTKLVCAVGSR  325 (342)
T ss_dssp             CSSEEEEEEECS
T ss_pred             CCCCCEEEEEeC
Confidence            999999888865

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=6.7e-06  Score=70.99  Aligned_cols=149  Identities=11%  Similarity=0.158  Sum_probs=91.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  113 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr  113 (290)
                      .+.+++|++.+++||.++...+.|...+++. ...+.+-   ..+                              -..|.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~---~~~------------------------------~~~p~   82 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTII---RQD------------------------------LGSPE   82 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEE---CTT------------------------------CCCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEE---Eec------------------------------ccccc
Confidence            3557899999999999999899999888853 2222221   110                              14799


Q ss_pred             EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412        114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY  193 (290)
Q Consensus       114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~  193 (290)
                      .++++.-++.||+++.....+.++..     ++..           ...+..           .....|.+|++.|...+
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~-----dg~~-----------~~~l~~-----------~~l~~p~~l~vdp~~g~  135 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKM-----DGTQ-----------RRVLFD-----------TGLVNPRGIVTDPVRGN  135 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-----TSCS-----------CEEEEC-----------SSCSSEEEEEEETTTTE
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEec-----CCce-----------EEEEec-----------ccccCCcEEEEecccCc
Confidence            99999999999998763222221110     1100           000100           01145789999999999


Q ss_pred             EEEEeCCCCcEEEEEec-CCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412        194 LYTSNWMHGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY  272 (290)
Q Consensus       194 Lyvs~r~~~~V~v~Dv~-d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~  272 (290)
                      ||.++++.+.-.++.+. +......+.   ..+                           .   ..|.++++++.+++||
T Consensus       136 ly~t~~~~~~~~I~r~~~dG~~~~~i~---~~~---------------------------~---~~P~glaiD~~~~~lY  182 (263)
T d1npea_         136 LYWTDWNRDNPKIETSHMDGTNRRILA---QDN---------------------------L---GLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             EEEEECCSSSCEEEEEETTSCCCEEEE---CTT---------------------------C---SCEEEEEEETTTTEEE
T ss_pred             EEEeecCCCCcEEEEecCCCCCceeee---eec---------------------------c---cccceEEEeecCcEEE
Confidence            99999776543344332 211111111   011                           0   2688899999999999


Q ss_pred             EEcC
Q psy11412        273 VSSS  276 (290)
Q Consensus       273 Van~  276 (290)
                      +++.
T Consensus       183 w~d~  186 (263)
T d1npea_         183 WVDA  186 (263)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            8865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.41  E-value=6.7e-06  Score=71.86  Aligned_cols=111  Identities=14%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEc
Q psy11412        110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILIS  188 (290)
Q Consensus       110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~S  188 (290)
                      ..|.++++++|++++|++....+.+-.+.+..   +.....  .      ...+.      .   ..+ ....|.++++.
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~---~~~~~~--~------~~~~~------~---~~~~~~g~pdG~~vD  207 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA---RTGLPT--G------KAEVF------I---DSTGIKGGMDGSVCD  207 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCT---TTCCBS--S------CCEEE------E---ECTTSSSEEEEEEEC
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecc---cccccc--c------ceEEE------e---ccCcccccccceEEc
Confidence            46888999999999999877544433332211   110000  0      00000      0   011 12468889999


Q ss_pred             cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc-cC
Q psy11412        189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS-LD  267 (290)
Q Consensus       189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s-PD  267 (290)
                      ++|. ||++.++.+.|..||-.    .+++..+.+...                               +|.+++|. ||
T Consensus       208 ~~Gn-lWva~~~~g~V~~~dp~----G~~~~~i~lP~~-------------------------------~~T~~~FGG~d  251 (295)
T d2ghsa1         208 AEGH-IWNARWGEGAVDRYDTD----GNHIARYEVPGK-------------------------------QTTCPAFIGPD  251 (295)
T ss_dssp             TTSC-EEEEEETTTEEEEECTT----CCEEEEEECSCS-------------------------------BEEEEEEESTT
T ss_pred             CCCC-EEeeeeCCCceEEecCC----CcEeeEecCCCC-------------------------------ceEEEEEeCCC
Confidence            9996 79999888999998642    456777765431                               68899995 89


Q ss_pred             CCEEEEEcC
Q psy11412        268 GKRIYVSSS  276 (290)
Q Consensus       268 G~~L~Van~  276 (290)
                      +++|||+.+
T Consensus       252 ~~~LyvTta  260 (295)
T d2ghsa1         252 ASRLLVTSA  260 (295)
T ss_dssp             SCEEEEEEB
T ss_pred             CCEEEEEEC
Confidence            999999854

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=6e-06  Score=69.21  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=27.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDT   65 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~   65 (290)
                      .+.+|+|||||++|+++.. +|+|++||+...
T Consensus        13 ~I~~l~fsp~~~~L~s~s~-Dg~v~iwd~~~~   43 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSW-DGSLTVYKFDIQ   43 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEET-TSEEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEEC-CCeEEEEEccCC
Confidence            5789999999999998875 899999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.2e-06  Score=70.49  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ..+.+..++|+|||++|++++. +|.|.+||+.+.   ........++                              ..
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~---~~~~~~~~~h------------------------------~~  206 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDV-MGKILLYDLQSR---EVKTSRWAFR------------------------------TS  206 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTT---EEEECCSCCC------------------------------SS
T ss_pred             cCCceeEEEeccCccccccccc-cccccceeeccc---cccccccccc------------------------------cc
Confidence            3456789999999999998875 889999998652   2211111110                              13


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      ....++|+|+++...........+   .  ....++ .+.++++..   ........    .+    .......++++||
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l---~--sgs~D~-~i~iw~~~~---~~~~~~~~----~~----h~~~V~~v~~~~~  269 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLV---A--TGSLDT-NIFIYSVKR---PMKIIKAL----NA----HKDGVNNLLWETP  269 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEE---E--EEETTS-CEEEEESSC---TTCCEEET----TS----STTCEEEEEEEET
T ss_pred             ccceeeecccccccccccCCCCee---E--eecCCC-eEEEEECCC---CCeEEEEe----CC----CCCCeEEEEECCC
Confidence            466788888776443322100000   0  000122 343344321   11111000    00    1246788999999


Q ss_pred             CCEEEEEeCCCCcEEEEEe
Q psy11412        191 DRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv  209 (290)
                      ++ |+++. .++.|.+|+|
T Consensus       270 ~~-l~s~g-~D~~v~iW~i  286 (287)
T d1pgua2         270 ST-LVSSG-ADACIKRWNV  286 (287)
T ss_dssp             TE-EEEEE-TTSCEEEEEE
T ss_pred             CE-EEEEE-CCCeEEEEEE
Confidence            86 55666 5899999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.1e-05  Score=67.42  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ  260 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~  260 (290)
                      ....|+|||+|++|+++. .++.|.+||+..   .+.+.+++...                                ...
T Consensus       253 ~v~~l~~sp~~~~lasg~-~Dg~v~vWD~~~---~~~l~~~~~~~--------------------------------~~~  296 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAG-SDGIISCWNLQT---RKKIKNFAKFN--------------------------------EDS  296 (342)
T ss_dssp             CEEEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCCCS--------------------------------SSE
T ss_pred             cceeEEecCCccEEEEEC-CCCEEEEEECCC---CcEEEEecCCC--------------------------------CCE
Confidence            456799999999998888 689999999864   34555443222                                234


Q ss_pred             eEEEccCCCEEEEEcC
Q psy11412        261 MFQLSLDGKRIYVSSS  276 (290)
Q Consensus       261 ~~a~sPDG~~L~Van~  276 (290)
                      .++|+|+|+.|++|.+
T Consensus       297 ~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         297 VVKIACSDNILCLATS  312 (342)
T ss_dssp             EEEEEECSSEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEc
Confidence            6899999999999854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.34  E-value=9.4e-06  Score=72.84  Aligned_cols=163  Identities=12%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             ceEEEEE--cCCCC-EEEEEeC--CCCeEEEEEcCCCCC-ceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412         34 MVTDILI--SLDDR-YLYTSNW--MHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR  107 (290)
Q Consensus        34 ~p~~va~--SpDGr-~Lyva~~--~~g~V~v~dv~d~~~-~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  107 (290)
                      +||++.+  .+||+ +|||.|-  ...+|.+|++..... ...+.++...                              
T Consensus        98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~------------------------------  147 (340)
T d1v04a_          98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------------------------  147 (340)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------------------------
T ss_pred             eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc------------------------------
Confidence            7998876  66777 6888874  567899999865321 2222221110                              


Q ss_pred             cCCCceEEEEccCCCEEEEEcCCCC--CcceeecccccC-CCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412        108 FTGSSQMFQLSLDGKRIYVSSSLFS--PWDKEIYPDLVK-TDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD  184 (290)
Q Consensus       108 ~g~gPr~vafsPdG~~lYv~nel~~--~~d~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~  184 (290)
                      .-..|..+++..+|. +|++|-...  .+... ...... ..+.+..++..      ....         ....-..|.+
T Consensus       148 ~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~-~e~~~~~~~g~v~~~~~~------~~~~---------~~~~l~~pNG  210 (340)
T d1v04a_         148 LLPSVNDIVAVGPEH-FYATNDHYFIDPYLKS-WEMHLGLAWSFVTYYSPN------DVRV---------VAEGFDFANG  210 (340)
T ss_dssp             TCSSEEEEEEEETTE-EEEEESCSCCSHHHHH-HHHHTTCCCEEEEEECSS------CEEE---------EEEEESSEEE
T ss_pred             cccCccceEEecCCC-EEEecCccCcChhhhh-hhHhhcCCceeEEEEcCC------ceEE---------EcCCCCccce
Confidence            014689999999996 777764111  11000 000000 01111111110      0000         0001146889


Q ss_pred             EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412        185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL  264 (290)
Q Consensus       185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~  264 (290)
                      |++|||+++|||+....++|.+|++...........+..++                                .|.++.+
T Consensus       211 I~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~--------------------------------~pDNi~~  258 (340)
T d1v04a_         211 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT--------------------------------LVDNISV  258 (340)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS--------------------------------EEEEEEE
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC--------------------------------CCCccEE
Confidence            99999999999999889999999996544444444454444                                6888999


Q ss_pred             ccCCCEEEEEc
Q psy11412        265 SLDGKRIYVSS  275 (290)
Q Consensus       265 sPDG~~L~Van  275 (290)
                      ++++..+++++
T Consensus       259 d~~~g~lwva~  269 (340)
T d1v04a_         259 DPVTGDLWVGC  269 (340)
T ss_dssp             CTTTCCEEEEE
T ss_pred             ecCCCEEEEEE
Confidence            87666666664

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=3.6e-05  Score=64.89  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412         39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  118 (290)
Q Consensus        39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs  118 (290)
                      ++++||++|++++. +|+|++||+.+   .+.+.++..+                               ......++|+
T Consensus        18 c~~~~~~~l~tgs~-Dg~i~vWd~~~---~~~~~~l~~H-------------------------------~~~V~~l~~s   62 (355)
T d1nexb2          18 CLQFEDNYVITGAD-DKMIRVYDSIN---KKFLLQLSGH-------------------------------DGGVWALKYA   62 (355)
T ss_dssp             EEEEETTEEEEEET-TTEEEEEETTT---TEEEEEEECC-------------------------------SSCEEEEEEE
T ss_pred             EEEECCCEEEEEeC-CCeEEEEECCC---CcEEEEEECC-------------------------------CCCEEEEEEc
Confidence            46778999988765 89999999865   3444433221                               1467889999


Q ss_pred             cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEe
Q psy11412        119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSN  198 (290)
Q Consensus       119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~  198 (290)
                      |++ +|+.++.               ++ .+..++...   .........       .........+.+++++++++.+.
T Consensus        63 ~~~-~l~s~s~---------------D~-~i~iw~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  115 (355)
T d1nexb2          63 HGG-ILVSGST---------------DR-TVRVWDIKK---GCCTHVFEG-------HNSTVRCLDIVEYKNIKYIVTGS  115 (355)
T ss_dssp             TTT-EEEEEET---------------TC-CEEEEETTT---TEEEEEECC-------CSSCEEEEEEEEETTEEEEEEEE
T ss_pred             CCC-EEEEEec---------------cc-ccccccccc---ccccccccc-------ccccccccccccccccceeeeec
Confidence            975 5665543               12 222222211   000100000       00112334567889999988887


Q ss_pred             CCCCcEEEEEecC
Q psy11412        199 WMHGDIRQYDIRD  211 (290)
Q Consensus       199 r~~~~V~v~Dv~d  211 (290)
                       .++.|.+||+..
T Consensus       116 -~d~~i~iw~~~~  127 (355)
T d1nexb2         116 -RDNTLHVWKLPK  127 (355)
T ss_dssp             -TTSEEEEEECCC
T ss_pred             -CCCcEEEEEccC
Confidence             688999999854

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.17  E-value=6.9e-06  Score=75.02  Aligned_cols=121  Identities=17%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412         36 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF  115 (290)
Q Consensus        36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v  115 (290)
                      ..+...+|+.++|.   .+|.|.+||+.......++    .+.              .+.           ..+.....+
T Consensus        20 ~~~~W~~d~~~~~~---~~~~~~~~~~~t~~~~~~~----~~~--------------~~~-----------~~~~~i~~~   67 (470)
T d2bgra1          20 YSLRWISDHEYLYK---QENNILVFNAEYGNSSVFL----ENS--------------TFD-----------EFGHSINDY   67 (470)
T ss_dssp             CCCEECSSSEEEEE---SSSCEEEEETTTCCEEEEE----CTT--------------TTT-----------TSSSCCCEE
T ss_pred             cCCEeCCCCEEEEE---cCCcEEEEECCCCCEEEEE----chh--------------hhh-----------hccCcccee
Confidence            45667899999883   3578999999763321111    110              000           012456789


Q ss_pred             EEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEE
Q psy11412        116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLY  195 (290)
Q Consensus       116 afsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Ly  195 (290)
                      .|||||++|+.+.+....|...       ..+.+   .+.++...+ +..+.         ..+.....+.|||||+.++
T Consensus        68 ~~SpDg~~i~~~~~~~~~~r~s-------~~~~~---~l~d~~~~~-~~~l~---------~~~~~~~~~~~SPDG~~ia  127 (470)
T d2bgra1          68 SISPDGQFILLEYNYVKQWRHS-------YTASY---DIYDLNKRQ-LITEE---------RIPNNTQWVTWSPVGHKLA  127 (470)
T ss_dssp             EECTTSSEEEEEEEEEECSSSC-------EEEEE---EEEETTTTE-ECCSS---------CCCTTEEEEEECSSTTCEE
T ss_pred             EECCCCCEEEEEECCcceeeec-------cCceE---EEEECCCCc-ccccc---------cCCccccccccccCcceee
Confidence            9999999988765421111100       00111   122211111 11100         0123466789999999987


Q ss_pred             EEeCCCCcEEEEEec
Q psy11412        196 TSNWMHGDIRQYDIR  210 (290)
Q Consensus       196 vs~r~~~~V~v~Dv~  210 (290)
                      ...  ++.+.++++.
T Consensus       128 ~~~--~~~l~~~~~~  140 (470)
T d2bgra1         128 YVW--NNDIYVKIEP  140 (470)
T ss_dssp             EEE--TTEEEEESST
T ss_pred             Eee--cccceEEECC
Confidence            654  5678898874

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=0.00011  Score=61.14  Aligned_cols=29  Identities=14%  Similarity=0.086  Sum_probs=19.8

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      ......+||||++++......+...+|..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~  200 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQ  200 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEe
Confidence            34557899999998876655555555544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.94  E-value=0.00047  Score=61.37  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCC-----------CCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWM-----------HGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~-----------~g~V~v~dv~d   64 (290)
                      .+..+++.|||..+++++..           .|.|.++|+.+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~   77 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNE   77 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTS
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCC
Confidence            57889999999988877531           37888888865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.83  E-value=0.00019  Score=62.27  Aligned_cols=122  Identities=11%  Similarity=0.026  Sum_probs=69.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412         31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG  110 (290)
Q Consensus        31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  110 (290)
                      ++..+.++++.+||+.++ ++.  +.|..+|..+ +..+.+..+..+                             ..+.
T Consensus        57 ~~~~~~~i~~~~dg~l~v-a~~--~gl~~~d~~t-g~~~~l~~~~~~-----------------------------~~~~  103 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLI-ASD--DGLFLRDTAT-GVLTLHAELESD-----------------------------LPGN  103 (295)
T ss_dssp             CSSCEEEEEEEETTEEEE-EET--TEEEEEETTT-CCEEEEECSSTT-----------------------------CTTE
T ss_pred             CCCCcEEEEEecCCCEEE-EEe--CccEEeeccc-ceeeEEeeeecC-----------------------------CCcc
Confidence            677889999999997765 443  4688888765 233332211000                             0124


Q ss_pred             CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412        111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD  190 (290)
Q Consensus       111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD  190 (290)
                      .+..++++|+|+. |++.......         ...+.+.  ...+    ..+..+.         ..-..+.++++|+|
T Consensus       104 ~~nd~~vd~~G~i-w~~~~~~~~~---------~~~g~l~--~~~~----g~~~~~~---------~~~~~~Ng~~~s~d  158 (295)
T d2ghsa1         104 RSNDGRMHPSGAL-WIGTMGRKAE---------TGAGSIY--HVAK----GKVTKLF---------ADISIPNSICFSPD  158 (295)
T ss_dssp             EEEEEEECTTSCE-EEEEEETTCC---------TTCEEEE--EEET----TEEEEEE---------EEESSEEEEEECTT
T ss_pred             cceeeEECCCCCE-EEEecccccc---------ccceeEe--eecC----CcEEEEe---------eccCCcceeeecCC
Confidence            6888999999984 5543210000         0001110  1100    0000000         00124677999999


Q ss_pred             CCEEEEEeCCCCcEEEEEec
Q psy11412        191 DRYLYTSNWMHGDIRQYDIR  210 (290)
Q Consensus       191 Gr~Lyvs~r~~~~V~v~Dv~  210 (290)
                      ++.||+++-..+.|..|++.
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBC
T ss_pred             CceEEEeecccceeeEeeec
Confidence            99999999888999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=0.0002  Score=60.12  Aligned_cols=30  Identities=10%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ....+.++|++.+++++.. +++|++||+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~  232 (355)
T d1nexb2         203 RIYSTIYDHERKRCISASM-DTTIRIWDLEN  232 (355)
T ss_dssp             CEEEEEEETTTTEEEEEET-TSCEEEEETTT
T ss_pred             ccccccccccceeeecccc-cceEEeeeccc
Confidence            5678899999999988875 78999999865

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.7e-05  Score=68.48  Aligned_cols=88  Identities=13%  Similarity=0.015  Sum_probs=44.6

Q ss_pred             eEEEEccCCCEEEEEeCCCCcEEEEEecCCC---CceE-eeEEeeCceecCCCceEEecCCCCCC----CCCcceeeccc
Q psy11412        183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTA---HPVL-VGQIFLGGKIQSDSGVTVIDDPELDK----QPDPVIIKGRR  254 (290)
Q Consensus       183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~---~~~~-v~~i~~Gg~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~  254 (290)
                      .++-+||||++|+..-..+..|..+.+....   .+.. .-..+.-|.-.+.-.|.|++......    .|..    ...
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~----~~~  251 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD----DPR  251 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC----CGG
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccC----cCc
Confidence            4678999999999876556667667664311   1111 11222222222223466676543211    1110    000


Q ss_pred             cc-CCcceEEEccCCCEEEEE
Q psy11412        255 FT-GSSQMFQLSLDGKRIYVS  274 (290)
Q Consensus       255 ~~-~~P~~~a~sPDG~~L~Va  274 (290)
                      .. .....+.++||++.++..
T Consensus       252 ~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         252 MREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             GSSEEEEEEEESSSSEEEEEE
T ss_pred             cccceeeeeEEcCCCeEEEEE
Confidence            00 125678999999865543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=6.9e-05  Score=62.71  Aligned_cols=29  Identities=17%  Similarity=0.086  Sum_probs=23.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCC----cEEEEEec
Q psy11412        181 MVTDILISLDDRYLYTSNWMHG----DIRQYDIR  210 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~----~V~v~Dv~  210 (290)
                      ....+++||||++|+++. .++    .|.+||..
T Consensus       307 ~v~~v~~s~~~~~la~g~-~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         307 VVWRIRASNTKLVCAVGS-RNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEEECSSEEEEEEEC-SSSSSCCEEEEEECC
T ss_pred             CEEEEEECCCCCEEEEEe-CCCCCeeEEEEEeCC
Confidence            477899999999988876 455    49999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.003  Score=50.92  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=21.0

Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         39 LISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        39 a~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      ++++||++|++++. +|+|++||+.+
T Consensus        20 c~~~d~~~l~sgs~-Dg~i~vWd~~~   44 (293)
T d1p22a2          20 CLQYDDQKIVSGLR-DNTIKIWDKNT   44 (293)
T ss_dssp             EEECCSSEEEEEES-SSCEEEEESSS
T ss_pred             EEEEcCCEEEEEeC-CCeEEEEECCC
Confidence            46789999988775 89999999965

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.65  E-value=0.00018  Score=65.29  Aligned_cols=63  Identities=14%  Similarity=0.174  Sum_probs=42.0

Q ss_pred             CCceEEEEEcCCCCEEEEEe--------CCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCccee
Q psy11412         32 PAMVTDILISLDDRYLYTSN--------WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII  103 (290)
Q Consensus        32 ~~~p~~va~SpDGr~Lyva~--------~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~  103 (290)
                      ...+.++.|||||++|+.+.        ...+.+.+||+... ....+.    .                          
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~~~~l~----~--------------------------  109 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEE----R--------------------------  109 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSS----C--------------------------
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-cccccc----c--------------------------
Confidence            34578999999999988763        12467889998652 111110    0                          


Q ss_pred             eccccCCCceEEEEccCCCEEEEEcC
Q psy11412        104 KGRRFTGSSQMFQLSLDGKRIYVSSS  129 (290)
Q Consensus       104 ~~~~~g~gPr~vafsPdG~~lYv~ne  129 (290)
                          .......++|||||++++.+..
T Consensus       110 ----~~~~~~~~~~SPDG~~ia~~~~  131 (470)
T d2bgra1         110 ----IPNNTQWVTWSPVGHKLAYVWN  131 (470)
T ss_dssp             ----CCTTEEEEEECSSTTCEEEEET
T ss_pred             ----CCccccccccccCcceeeEeec
Confidence                0145678999999998877644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.40  E-value=0.0029  Score=58.01  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412         34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD   64 (290)
Q Consensus        34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d   64 (290)
                      .|.+|+|.|||+.| |+....|+|.+++..+
T Consensus        28 ~P~~la~~pdg~ll-Vter~~G~i~~v~~~~   57 (450)
T d1crua_          28 KPHALLWGPDNQIW-LTERATGKILRVNPES   57 (450)
T ss_dssp             SEEEEEECTTSCEE-EEETTTCEEEEECTTT
T ss_pred             CceEEEEeCCCeEE-EEEecCCEEEEEECCC
Confidence            89999999999755 6665578999887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.09  E-value=0.0011  Score=54.76  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=36.1

Q ss_pred             EEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEE
Q psy11412         39 LISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ  116 (290)
Q Consensus        39 a~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~va  116 (290)
                      .+|||  |++++-+.  .|.|.++|+.. +.++.+.   .+                               .....+.+
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~-g~~~~Lt---~~-------------------------------~~~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKS-GSTRKIV---SN-------------------------------LGVINNAR   47 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTT-CCEEEEE---CS-------------------------------SSEEEEEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCC-CCEEEEe---cC-------------------------------CCcccCEE
Confidence            57899  99988664  46799899864 3344331   11                               03456689


Q ss_pred             EccCCCEEEEEc
Q psy11412        117 LSLDGKRIYVSS  128 (290)
Q Consensus       117 fsPdG~~lYv~n  128 (290)
                      |||||++|+.+.
T Consensus        48 ~SPDG~~iaf~~   59 (281)
T d1k32a2          48 FFPDGRKIAIRV   59 (281)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999887653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.027  Score=45.75  Aligned_cols=29  Identities=17%  Similarity=0.041  Sum_probs=19.4

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412        181 MVTDILISLDDRYLYTSNWMHGDIRQYDI  209 (290)
Q Consensus       181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv  209 (290)
                      ......+||||+.++...+..+...++..
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccccceecCCCCeeeEeeecCCccceeec
Confidence            34567899999999876655544444433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.86  E-value=0.0017  Score=53.36  Aligned_cols=19  Identities=16%  Similarity=0.237  Sum_probs=15.9

Q ss_pred             CcceEEEccCCCEEEEEcC
Q psy11412        258 SSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       258 ~P~~~a~sPDG~~L~Van~  276 (290)
                      ..+..+++|||++|+....
T Consensus        96 ~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          96 FTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CSEEEEECTTCCEEEEECT
T ss_pred             cccccccCCCCCEEEEEEc
Confidence            4678999999999998755

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0039  Score=57.25  Aligned_cols=58  Identities=14%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412         39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS  118 (290)
Q Consensus        39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs  118 (290)
                      ...+|+.++|-.  .+|.|.+||+.+... +.+    +..             ..+.             .-.+....||
T Consensus        23 ~W~~~~~~~~~~--~~g~i~~~~~~~~~~-~~l----~~~-------------~~~~-------------~~~~~~~~~S   69 (465)
T d1xfda1          23 KWISDTEFIYRE--QKGTVRLWNVETNTS-TVL----IEG-------------KKIE-------------SLRAIRYEIS   69 (465)
T ss_dssp             CBSSSSCBCCCC--SSSCEEEBCGGGCCC-EEE----ECT-------------TTTT-------------TTTCSEEEEC
T ss_pred             EEeCCCcEEEEe--CCCcEEEEECCCCCE-EEE----EcC-------------cccc-------------ccccceeEEC
Confidence            456888887742  357899999875322 221    110             0000             0245568899


Q ss_pred             cCCCEEEEEcC
Q psy11412        119 LDGKRIYVSSS  129 (290)
Q Consensus       119 PdG~~lYv~ne  129 (290)
                      |||+++++...
T Consensus        70 pD~~~vl~~~~   80 (465)
T d1xfda1          70 PDREYALFSYN   80 (465)
T ss_dssp             TTSSEEEEEES
T ss_pred             CCCCeEEEEEc
Confidence            99999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0091  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.276  Sum_probs=18.3

Q ss_pred             eeEEEEccCCCEEEEEeCCCCcEEEEE
Q psy11412        182 VTDILISLDDRYLYTSNWMHGDIRQYD  208 (290)
Q Consensus       182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~D  208 (290)
                      ...+++  ||++|+++. .+++|.+||
T Consensus       270 V~~v~~--d~~~l~s~s-~Dg~i~iWD  293 (293)
T d1p22a2         270 VFRLQF--DEFQIVSSS-HDDTILIWD  293 (293)
T ss_dssp             CCCEEE--CSSCEEECC-SSSEEEEEC
T ss_pred             EEEEEE--cCCEEEEEe-cCCEEEEeC
Confidence            445555  788888777 689999997

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.20  E-value=0.22  Score=44.89  Aligned_cols=20  Identities=25%  Similarity=0.296  Sum_probs=17.4

Q ss_pred             CCcceEEEccCCCEEEEEcC
Q psy11412        257 GSSQMFQLSLDGKRIYVSSS  276 (290)
Q Consensus       257 ~~P~~~a~sPDG~~L~Van~  276 (290)
                      ++|++|++.|||..|||+..
T Consensus       405 ~R~rdv~~gpDGs~lyv~~d  424 (450)
T d1crua_         405 NRYRDVIASPDGNVLYVLTD  424 (450)
T ss_dssp             SCEEEEEECTTSSCEEEEEC
T ss_pred             CCceEEEECCCCCEEEEEEC
Confidence            36999999999999998754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.58  E-value=0.37  Score=42.26  Aligned_cols=135  Identities=13%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             ceEEEEE--cCC-CCEEEEEeCCCCeEEEEEcCCCCCce----eeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412         34 MVTDILI--SLD-DRYLYTSNWMHGDIRQYDIRDTAHPV----LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  106 (290)
Q Consensus        34 ~p~~va~--SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~----~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  106 (290)
                      .++++++  +|+ |...+......|.+..|.+.......    .+..+..                              
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~------------------------------  178 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM------------------------------  178 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC------------------------------
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC------------------------------
Confidence            4678887  765 54333344568899999885433322    2222222                              


Q ss_pred             ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412        107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL  186 (290)
Q Consensus       107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~  186 (290)
                        ++.+.+++++...++||++.|..+.|-...-++   .+.....++...                +..+  ...+.+|+
T Consensus       179 --~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~---~~~~~~~i~~~~----------------g~~l--~~D~EGla  235 (353)
T d1h6la_         179 --NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPD---GGSNGTVIDRAD----------------GRHL--TPDIEGLT  235 (353)
T ss_dssp             --SSCEEEEEEETTTTEEEEEETTTEEEEEESSTT---SCSCCEEEEECS----------------SSSC--CSCEEEEE
T ss_pred             --CCccceEEEeCCCCcEEEecCccceEEEEeccC---CCccceeeeccc----------------Cccc--cCCccccE
Confidence              257899999999999999988544443211111   110000011100                0001  12345555


Q ss_pred             E--ccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412        187 I--SLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL  223 (290)
Q Consensus       187 ~--SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~  223 (290)
                      +  ..||. +|.+|..++++..+||...+  ...++...+
T Consensus       236 iy~~~~~~GylivSsQG~n~f~vydr~~~--~~~~g~F~i  273 (353)
T d1h6la_         236 IYYAADGKGYLLASSQGNSSYAIYERQGQ--NKYVADFQI  273 (353)
T ss_dssp             EEECGGGCEEEEEEEGGGTEEEEEESSTT--CCEEEEEEE
T ss_pred             EEEcCCCCeEEEEEcCCCCeEEEEecCCC--ccccceEEE
Confidence            4  45655 99999999999999998543  245665544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.53  E-value=1.4  Score=38.65  Aligned_cols=30  Identities=17%  Similarity=0.204  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCC----eEEEEEcCC
Q psy11412         35 VTDILISLDDRYLYTSNWMHG----DIRQYDIRD   64 (290)
Q Consensus        35 p~~va~SpDGr~Lyva~~~~g----~V~v~dv~d   64 (290)
                      ..+..+||||++|+.+-..+|    .|+++|+.+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t  160 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCc
Confidence            346789999999998743233    488888865

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.86  E-value=8.5  Score=33.03  Aligned_cols=69  Identities=13%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             ceeEEEE--ccC-CCEEEEEeCCCCcEEEEEecCCCCc----eEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412        181 MVTDILI--SLD-DRYLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR  253 (290)
Q Consensus       181 ~~~~i~~--SpD-Gr~Lyvs~r~~~~V~v~Dv~d~~~~----~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (290)
                      .++++++  +|+ |+..+..++..+.+..|.+......    +++.++..+.                            
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~----------------------------  180 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS----------------------------  180 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS----------------------------
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC----------------------------
Confidence            5788988  775 5543344446788999988533222    2334443333                            


Q ss_pred             cccCCcceEEEccCCCEEEEEcCCCCCC
Q psy11412        254 RFTGSSQMFQLSLDGKRIYVSSSLFSPW  281 (290)
Q Consensus       254 ~~~~~P~~~a~sPDG~~L~Van~~~~~~  281 (290)
                          .+.++++++..++||++-+-.--|
T Consensus       181 ----q~EGCVvDde~~~LyisEE~~Giw  204 (353)
T d1h6la_         181 ----QTEGMAADDEYGSLYIAEEDEAIW  204 (353)
T ss_dssp             ----CEEEEEEETTTTEEEEEETTTEEE
T ss_pred             ----ccceEEEeCCCCcEEEecCccceE
Confidence                689999999999999996644445