Psyllid ID: psy11424

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK
cccccccccEEEEccccccccccccEEEEEEccccccccEEEEcccccccccccccccccccHHHHHHHHHHccccEEEcccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
ccHHcccccEEEEcccccccccccccEEEEEccccccccEEEEcccccHHHcccccEEccHHHHHHHHHHHHccccEEEEccccccHHHHHHcccccHHHHHHHHHHHHcccHHHHHHccccccccccccccEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcc
MAIIKGKADLAVHslkdipmnlpsgFILCAILkredprdafisndyislstlpknavvgtNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMlfspnqilpapgqgaiAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIitnpnglkIITAevngpidtpetVGLYAAELLKKKGAIEIIKSYEKK
maiikgkaDLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISndyislstlpknavvgtNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSpnqilpapgQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELlkkkgaieiiksyekk
MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK
*******ADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK*****
MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEK*
MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK
***IKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q7VVU9314 Porphobilinogen deaminase yes N/A 0.959 0.748 0.521 3e-66
Q7W785314 Porphobilinogen deaminase yes N/A 0.959 0.748 0.521 7e-66
Q7WKM1314 Porphobilinogen deaminase yes N/A 0.959 0.748 0.521 7e-66
B2JEN9327 Porphobilinogen deaminase yes N/A 0.967 0.724 0.502 4e-64
Q82WS2308 Porphobilinogen deaminase yes N/A 0.971 0.772 0.502 9e-64
Q7MQC7312 Porphobilinogen deaminase yes N/A 0.963 0.756 0.485 1e-63
Q8DD85312 Porphobilinogen deaminase yes N/A 0.963 0.756 0.485 1e-63
B2T1D1342 Porphobilinogen deaminase yes N/A 0.967 0.692 0.502 1e-63
Q479S8311 Porphobilinogen deaminase yes N/A 0.967 0.762 0.483 2e-63
Q7P207309 Porphobilinogen deaminase yes N/A 0.967 0.766 0.487 2e-63
>sp|Q7VVU9|HEM3_BORPE Porphobilinogen deaminase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=hemC PE=3 SV=1 Back     alignment and function desciption
 Score =  251 bits (642), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 2   AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
           A++ G+ADLAVHSLKD+P++L + F L  +L+R DPRDAF+SNDY SL+ LP  A VGT+
Sbjct: 70  ALLDGRADLAVHSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTS 129

Query: 62  SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
           SLRR+  I++ +P L++K LRGN+DTRL KLD G+YAAI+LAAAGL+RL L  RIR L  
Sbjct: 130 SLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNGDYAAIVLAAAGLERLGLAARIRALLE 189

Query: 122 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 181
           P+  LPA GQGA+ IEIL  R ++  ML PL    +   V AERAVSR   GSC++ LAA
Sbjct: 190 PDDSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLGGSCQVPLAA 249

Query: 182 FAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 239
           +A ++     E+ LRA++  P+G +I+ AE  GP D  + +G  AA  L   GA  I+
Sbjct: 250 YARIDG---DELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAIL 304
Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 1
>sp|Q7W785|HEM3_BORPA Porphobilinogen deaminase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q7WKM1|HEM3_BORBR Porphobilinogen deaminase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|B2JEN9|HEM3_BURP8 Porphobilinogen deaminase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q82WS2|HEM3_NITEU Porphobilinogen deaminase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q7MQC7|HEM3_VIBVY Porphobilinogen deaminase OS=Vibrio vulnificus (strain YJ016) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q8DD85|HEM3_VIBVU Porphobilinogen deaminase OS=Vibrio vulnificus (strain CMCP6) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|B2T1D1|HEM3_BURPP Porphobilinogen deaminase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q479S8|HEM3_DECAR Porphobilinogen deaminase OS=Dechloromonas aromatica (strain RCB) GN=hemC PE=3 SV=1 Back     alignment and function description
>sp|Q7P207|HEM3_CHRVO Porphobilinogen deaminase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=hemC PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
399020182317 porphobilinogen deaminase [Herbaspirillu 0.963 0.744 0.569 3e-76
329903547280 Porphobilinogen deaminase [Oxalobacterac 0.959 0.839 0.581 2e-70
134094241317 porphobilinogen deaminase [Herminiimonas 0.971 0.750 0.585 4e-70
445495934295 porphobilinogen deaminase HemC [Janthino 0.967 0.803 0.573 8e-68
340786600313 porphobilinogen deaminase [Collimonas fu 0.963 0.753 0.569 5e-66
409406649318 porphobilinogen deaminase [Herbaspirillu 0.963 0.742 0.531 8e-66
395761656336 porphobilinogen deaminase [Janthinobacte 0.971 0.708 0.557 2e-65
152980451317 hydroxymethylbilane synthase [Janthinoba 0.963 0.744 0.564 2e-65
293604316315 hydroxymethylbilane synthase [Achromobac 0.963 0.749 0.510 3e-65
430807589317 porphobilinogen deaminase [Cupriavidus s 0.971 0.750 0.512 1e-64
>gi|399020182|ref|ZP_10722321.1| porphobilinogen deaminase [Herbaspirillum sp. CF444] gi|398095834|gb|EJL86166.1| porphobilinogen deaminase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/239 (56%), Positives = 178/239 (74%), Gaps = 3/239 (1%)

Query: 1   MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
           +A+ +G+AD AVHSLKD+PM LP GF+L  IL+REDPRDAF+SNDY  L  LP  AVVGT
Sbjct: 71  VAMAEGRADFAVHSLKDVPMELPQGFVLGGILEREDPRDAFVSNDYAGLDDLPHGAVVGT 130

Query: 61  NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
           +SLRR+ LI + +P L+IK LRGN+DTRL KLD+GEYAAIILA AGLKRL L+ RIR   
Sbjct: 131 SSLRRQALIAARYPHLVIKPLRGNLDTRLAKLDRGEYAAIILAVAGLKRLGLESRIRSAI 190

Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 180
           +P Q LPAPGQGA+AIEIL +R +L  +L P+NH  +++ V AER +SR F GSC+I LA
Sbjct: 191 APEQSLPAPGQGAMAIEILADRTDLQRVLAPINHLPTDRAVTAERTLSRTFGGSCQIPLA 250

Query: 181 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 239
           AFA +      ++++RA++  P+G +I  AE +GP D PE +G   A+LL+ +GA  I+
Sbjct: 251 AFATIEG---DKMHMRAMVATPDGKQIAAAEASGPADAPEALGRQVADLLQAQGAEAIL 306

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|329903547|ref|ZP_08273542.1| Porphobilinogen deaminase [Oxalobacteraceae bacterium IMCC9480] gi|327548285|gb|EGF32978.1| Porphobilinogen deaminase [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|134094241|ref|YP_001099316.1| porphobilinogen deaminase [Herminiimonas arsenicoxydans] gi|133738144|emb|CAL61189.1| Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|445495934|ref|ZP_21462978.1| porphobilinogen deaminase HemC [Janthinobacterium sp. HH01] gi|444792095|gb|ELX13642.1| porphobilinogen deaminase HemC [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|340786600|ref|YP_004752065.1| porphobilinogen deaminase [Collimonas fungivorans Ter331] gi|340551867|gb|AEK61242.1| Porphobilinogen deaminase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|409406649|ref|ZP_11255111.1| porphobilinogen deaminase [Herbaspirillum sp. GW103] gi|386435198|gb|EIJ48023.1| porphobilinogen deaminase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|395761656|ref|ZP_10442325.1| porphobilinogen deaminase [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|152980451|ref|YP_001352832.1| hydroxymethylbilane synthase [Janthinobacterium sp. Marseille] gi|151280528|gb|ABR88938.1| hydroxymethylbilane synthase [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|293604316|ref|ZP_06686723.1| hydroxymethylbilane synthase [Achromobacter piechaudii ATCC 43553] gi|292817193|gb|EFF76267.1| hydroxymethylbilane synthase [Achromobacter piechaudii ATCC 43553] Back     alignment and taxonomy information
>gi|430807589|ref|ZP_19434704.1| porphobilinogen deaminase [Cupriavidus sp. HMR-1] gi|429500112|gb|EKZ98496.1| porphobilinogen deaminase [Cupriavidus sp. HMR-1] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
UNIPROTKB|P06983313 hemC [Escherichia coli K-12 (t 0.959 0.750 0.475 6.5e-51
TIGR_CMR|BA_4696309 BA_4696 "porphobilinogen deami 0.975 0.773 0.409 4.2e-40
ZFIN|ZDB-GENE-040426-1375358 hmbsa "hydroxymethylbilane syn 0.751 0.513 0.430 3.2e-39
TIGR_CMR|CHY_1208311 CHY_1208 "porphobilinogen deam 0.979 0.771 0.370 3.4e-38
UNIPROTKB|F1NKN8349 HMBS "Uncharacterized protein" 0.759 0.532 0.436 1.9e-37
TIGR_CMR|SPO_3649319 SPO_3649 "porphobilinogen deam 0.938 0.721 0.393 2.1e-36
MGI|MGI:96112361 Hmbs "hydroxymethylbilane synt 0.918 0.623 0.353 5.7e-36
RGD|2801361 Hmbs "hydroxymethylbilane synt 0.918 0.623 0.358 7.2e-36
UNIPROTKB|Q5M893361 Hmbs "Hydroxymethylbilane synt 0.918 0.623 0.358 7.2e-36
CGD|CAL0000854340 HEM3 [Candida albicans (taxid: 0.934 0.673 0.421 7.2e-36
UNIPROTKB|P06983 hemC [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 114/240 (47%), Positives = 156/240 (65%)

Query:     1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
             +A+++ +AD+AVHS+KD+P+  P G  L  I +REDPRDAF+SN+Y SL  LP  ++VGT
Sbjct:    68 VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGT 127

Query:    61 NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
             +SLRR+  +    P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR   
Sbjct:   128 SSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAAL 187

Query:   121 SPNQILPAPGQGAIAIEI-LDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISL 179
              P   LPA GQGA+ IE  LD+ +   E+L  LNH+ +   V AERA++    G C++ +
Sbjct:   188 PPEISLPAVGQGAVGIECRLDDSRT-RELLAALNHHETALRVTAERAMNTRLEGGCQVPI 246

Query:   180 AAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 239
              ++A      + EI LRA++  P+G +II  E  G     E +G+  AE L   GA EI+
Sbjct:   247 GSYA---ELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL 303
GO:0004418 "hydroxymethylbilane synthase activity" evidence=IEA;IMP
GO:0006783 "heme biosynthetic process" evidence=IMP
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP
GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA
TIGR_CMR|BA_4696 BA_4696 "porphobilinogen deaminase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1375 hmbsa "hydroxymethylbilane synthase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1208 CHY_1208 "porphobilinogen deaminase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKN8 HMBS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3649 SPO_3649 "porphobilinogen deaminase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
MGI|MGI:96112 Hmbs "hydroxymethylbilane synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2801 Hmbs "hydroxymethylbilane synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M893 Hmbs "Hydroxymethylbilane synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0000854 HEM3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CK24HEM3_PASMU2, ., 5, ., 1, ., 6, 10.47080.96320.7637yesN/A
A1RPD7HEM3_SHESW2, ., 5, ., 1, ., 6, 10.46930.98770.7806yesN/A
B2T1D1HEM3_BURPP2, ., 5, ., 1, ., 6, 10.50200.96730.6929yesN/A
Q21XQ9HEM3_RHOFD2, ., 5, ., 1, ., 6, 10.53430.82040.6380yesN/A
Q2T071HEM3_BURTA2, ., 5, ., 1, ., 6, 10.52350.85300.6352yesN/A
Q9KVM1HEM3_VIBCH2, ., 5, ., 1, ., 6, 10.4750.96730.7620yesN/A
A4YBG2HEM3_SHEPC2, ., 5, ., 1, ., 6, 10.46930.98770.7806yesN/A
Q5QUS3HEM3_IDILO2, ., 5, ., 1, ., 6, 10.46880.97140.7603yesN/A
B1JWR0HEM3_BURCC2, ., 5, ., 1, ., 6, 10.49380.96730.7095yesN/A
B4F1X3HEM3_PROMH2, ., 5, ., 1, ., 6, 10.46470.97140.7603yesN/A
B6EPK1HEM3_ALISL2, ., 5, ., 1, ., 6, 10.44760.96320.7588yesN/A
B7N295HEM3_ECO812, ., 5, ., 1, ., 6, 10.47280.96320.7539yesN/A
Q8XWW3HEM3_RALSO2, ., 5, ., 1, ., 6, 10.56310.83260.6107yesN/A
Q602K3HEM3_METCA2, ., 5, ., 1, ., 6, 10.45410.96730.7360yesN/A
Q7W785HEM3_BORPA2, ., 5, ., 1, ., 6, 10.52100.95910.7484yesN/A
B2JEN9HEM3_BURP82, ., 5, ., 1, ., 6, 10.50200.96730.7247yesN/A
B2K065HEM3_YERPB2, ., 5, ., 1, ., 6, 10.45220.97140.7603yesN/A
B5FF97HEM3_VIBFM2, ., 5, ., 1, ., 6, 10.46250.96730.7620yesN/A
B7VMD9HEM3_VIBSL2, ., 5, ., 1, ., 6, 10.46440.96320.7564yesN/A
C6DHC2HEM3_PECCP2, ., 5, ., 1, ., 6, 10.45640.97140.7603yesN/A
Q82WS2HEM3_NITEU2, ., 5, ., 1, ., 6, 10.50200.97140.7727yesN/A
A9IKF3HEM3_BORPD2, ., 5, ., 1, ., 6, 10.53730.86120.6741yesN/A
Q6CZG3HEM3_ERWCT2, ., 5, ., 1, ., 6, 10.45220.97140.7603yesN/A
A7MXU9HEM3_VIBHB2, ., 5, ., 1, ., 6, 10.46860.96320.7564yesN/A
Q9K0P6HEM3_NEIMB2, ., 5, ., 1, ., 6, 10.48750.96730.7620yesN/A
Q3SFT5HEM3_THIDA2, ., 5, ., 1, ., 6, 10.46050.97140.7777yesN/A
Q87KI9HEM3_VIBPA2, ., 5, ., 1, ., 6, 10.47690.96320.7564yesN/A
Q7MYN1HEM3_PHOLL2, ., 5, ., 1, ., 6, 10.45830.95910.7507yesN/A
A6TGI8HEM3_KLEP72, ., 5, ., 1, ., 6, 10.46470.97140.7603yesN/A
A8G848HEM3_SERP52, ., 5, ., 1, ., 6, 10.44810.97140.7603yesN/A
Q479S8HEM3_DECAR2, ., 5, ., 1, ., 6, 10.48330.96730.7620yesN/A
B0TJ54HEM3_SHEHH2, ., 5, ., 1, ., 6, 10.46880.97140.7677yesN/A
Q31JG5HEM3_THICR2, ., 5, ., 1, ., 6, 10.45600.96320.7637yesN/A
Q8DD85HEM3_VIBVU2, ., 5, ., 1, ., 6, 10.48530.96320.7564yesN/A
Q5E8T5HEM3_VIBF12, ., 5, ., 1, ., 6, 10.46250.96730.7620yesN/A
Q15Z15HEM3_PSEA62, ., 5, ., 1, ., 6, 10.46720.98360.7799yesN/A
C1D679HEM3_LARHH2, ., 5, ., 1, ., 6, 10.48540.97140.7727yesN/A
Q59684HEM3_PROMI2, ., 5, ., 1, ., 6, 10.46470.97140.7603yesN/A
Q7VVU9HEM3_BORPE2, ., 5, ., 1, ., 6, 10.52100.95910.7484yesN/A
Q66G00HEM3_YERPS2, ., 5, ., 1, ., 6, 10.45220.97140.7603yesN/A
Q7MQC7HEM3_VIBVY2, ., 5, ., 1, ., 6, 10.48530.96320.7564yesN/A
B7MH66HEM3_ECO452, ., 5, ., 1, ., 6, 10.47280.96320.7539yesN/A
B5XYL1HEM3_KLEP32, ., 5, ., 1, ., 6, 10.46470.97140.7603yesN/A
B4E8C4HEM3_BURCJ2, ., 5, ., 1, ., 6, 10.49380.96730.7095yesN/A
A7MQJ1HEM3_CROS82, ., 5, ., 1, ., 6, 10.45600.96320.7539yesN/A
Q9JVS4HEM3_NEIMA2, ., 5, ., 1, ., 6, 10.48750.96730.7620yesN/A
Q7P207HEM3_CHRVO2, ., 5, ., 1, ., 6, 10.48750.96730.7669yesN/A
Q0VM28HEM3_ALCBS2, ., 5, ., 1, ., 6, 10.45830.96730.7645yesN/A
Q7WKM1HEM3_BORBR2, ., 5, ., 1, ., 6, 10.52100.95910.7484yesN/A
A8GZG4HEM3_SHEPA2, ., 5, ., 1, ., 6, 10.46470.97140.7677yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.610.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
PRK00072295 PRK00072, hemC, porphobilinogen deaminase; Reviewe 1e-111
COG0181307 COG0181, HemC, Porphobilinogen deaminase [Coenzyme 1e-101
cd00494292 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS) 1e-97
TIGR00212292 TIGR00212, hemC, porphobilinogen deaminase 7e-89
pfam01379213 pfam01379, Porphobil_deam, Porphobilinogen deamina 2e-74
PLN02691351 PLN02691, PLN02691, porphobilinogen deaminase 2e-58
PRK01066231 PRK01066, PRK01066, porphobilinogen deaminase; Pro 5e-29
pfam0390072 pfam03900, Porphobil_deamC, Porphobilinogen deamin 8e-12
>gnl|CDD|234612 PRK00072, hemC, porphobilinogen deaminase; Reviewed Back     alignment and domain information 
 Score =  320 bits (823), Expect = e-111
 Identities = 117/231 (50%), Positives = 156/231 (67%), Gaps = 3/231 (1%)

Query: 2   AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
           A+++G+ D+AVHSLKD+P  LP G +L AI +REDPRDA +S DY SL  LP+ AVVGT+
Sbjct: 68  ALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVGTS 127

Query: 62  SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
           SLRR+  + +  P L IK LRGN+DTRL KLD+GEY AIILAAAGLKRL L+ RI     
Sbjct: 128 SLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITEYLD 187

Query: 122 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 181
           P ++LPAPGQGA+ IE   + +E++E+L PLNH  +   V AERA  R   G C++ + A
Sbjct: 188 PEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEGGCQVPIGA 247

Query: 182 FAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKK 232
           +A        E+ LR ++ +P+G +II AE+ GP    E +G+  AE L  
Sbjct: 248 YA---ELEGDELRLRGLVGSPDGSEIIRAEIEGPAADAEELGIELAEELLA 295

Length = 295
>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 Back     alignment and domain information
>gnl|CDD|232876 TIGR00212, hemC, porphobilinogen deaminase Back     alignment and domain information
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane cofactor binding domain Back     alignment and domain information
>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase Back     alignment and domain information
>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional Back     alignment and domain information
>gnl|CDD|202802 pfam03900, Porphobil_deamC, Porphobilinogen deaminase, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
COG0181307 HemC Porphobilinogen deaminase [Coenzyme metabolis 100.0
TIGR00212292 hemC porphobilinogen deaminase. Biosynthesis of co 100.0
PLN02691351 porphobilinogen deaminase 100.0
cd00494292 HMBS Hydroxymethylbilane synthase (HMBS), also kno 100.0
PRK00072295 hemC porphobilinogen deaminase; Reviewed 100.0
KOG2892|consensus320 100.0
PF01379215 Porphobil_deam: Porphobilinogen deaminase, dipyrom 100.0
PRK01066231 porphobilinogen deaminase; Provisional 100.0
PF0390074 Porphobil_deamC: Porphobilinogen deaminase, C-term 99.83
PRK11063271 metQ DL-methionine transporter substrate-binding s 96.33
TIGR00363258 lipoprotein, YaeC family. This family of putative 96.15
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 94.02
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 93.97
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 93.67
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 93.39
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 93.33
PRK15007243 putative ABC transporter arginine-biding protein; 93.27
PRK11260266 cystine transporter subunit; Provisional 93.22
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 92.87
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 92.8
COG0834275 HisJ ABC-type amino acid transport/signal transduc 92.55
PRK15010260 ABC transporter lysine/arginine/ornithine binding 91.64
cd00134218 PBPb Bacterial periplasmic transport systems use m 91.48
PRK11480320 tauA taurine transporter substrate binding subunit 90.2
PF03180237 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR0048 89.94
PRK09959 1197 hybrid sensory histidine kinase in two-component r 89.25
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 88.62
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 88.12
PRK09959 1197 hybrid sensory histidine kinase in two-component r 87.97
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 87.87
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 87.22
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 87.18
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 87.14
PRK11553314 alkanesulfonate transporter substrate-binding subu 83.24
cd08429204 PBP2_NhaR The C-terminal substrate binding domain 82.54
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 81.79
cd08449197 PBP2_XapR The C-terminal substrate binding domain 81.02
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 80.95
cd08452197 PBP2_AlsR The C-terminal substrate binding domain 80.53
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-91  Score=637.49  Aligned_cols=241  Identities=49%  Similarity=0.795  Sum_probs=235.1

Q ss_pred             CccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEe
Q psy11424          1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKS   80 (245)
Q Consensus         1 ~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~   80 (245)
                      +||++|+||+|||||||||+++|+||.|+||++|+||+|+|||+++.+|.+||+|++|||||+||++||+++|||++|++
T Consensus        66 ~all~g~~DiAVHSlKDvP~~~p~gL~laai~~R~dprDalVs~~~~~l~~LP~Ga~VGTSSlRR~aql~~~rPdl~i~~  145 (307)
T COG0181          66 QALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVGTSSLRRQAQLKALRPDLKIEP  145 (307)
T ss_pred             HHHHcCCCCEEEeecccCCccCCCCceEEEecCCCChhheEEECCCCchhhCCCCCccccchHHHHHHHHHhCCCCeEEe
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhhcCCChhhHHH
Q psy11424         81 LRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQT  160 (245)
Q Consensus        81 iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~l~~~~t~~~  160 (245)
                      +||||||||+||++|+|||||||+|||+|||+.++++++|+|+.|+|||||||||||||.+|.++.++|+.|||.+|+.|
T Consensus       146 lRGNVdTRL~KL~~g~yDAIILA~AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~~~~~ll~~i~~~~t~~~  225 (307)
T COG0181         146 LRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRIC  225 (307)
T ss_pred             ccCcHHHHHHHhhcCCccHHHHHHHHHHhcCCcccceeecChhhcCCCCCCceEEEEEecCcHHHHHHHHhccCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcceeeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhHHHHHH
Q psy11424        161 VKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK  240 (245)
Q Consensus       161 v~aER~~l~~L~ggC~~Piga~a~~~~~~~~~l~l~~~v~~~dG~~~~~~~~~~~~~~a~~lg~~la~~l~~~ga~~il~  240 (245)
                      ++|||+||+.|+|||++|||+||+++  .+++|+|+|.|+++||++.++.+..++.++++++|+++|++|+++|+++|+.
T Consensus       226 v~aERa~l~~L~ggC~~PIg~~a~~~--~~~~l~l~~~v~~~DG~~~~~~~~~g~~~~a~~lG~~~a~~l~~~ga~e~l~  303 (307)
T COG0181         226 VTAERAFLRELEGGCQVPIGAYAELT--GGGELRLRALVGSPDGSQIIKAEIRGDAEDAEELGKELAEELLEKGAKEILE  303 (307)
T ss_pred             HHHHHHHHHhhCCCCCCceEEEEEEc--CCCeEEEEEEEECCCCceeEEEEeecchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999994  3449999999999999999999999999999999999999999999999998


Q ss_pred             Hhh
Q psy11424        241 SYE  243 (245)
Q Consensus       241 ~~~  243 (245)
                      .++
T Consensus       304 ~~~  306 (307)
T COG0181         304 GVR  306 (307)
T ss_pred             Hhc
Confidence            765

>TIGR00212 hemC porphobilinogen deaminase Back     alignment and domain information
>PLN02691 porphobilinogen deaminase Back     alignment and domain information
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 Back     alignment and domain information
>PRK00072 hemC porphobilinogen deaminase; Reviewed Back     alignment and domain information
>KOG2892|consensus Back     alignment and domain information
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK01066 porphobilinogen deaminase; Provisional Back     alignment and domain information
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1ypn_A313 Reduced Form Hydroxymethylbilane Synthase (K59q Mut 3e-57
2ypn_A313 Hydroxymethylbilane Synthase Length = 313 3e-57
1pda_A313 Structure Of Porphobilinogen Deaminase Reveals A Fl 7e-57
1ah5_A313 Reduced Form Selenomethionine-Labelled Hydroxymethy 1e-56
4htg_A320 Porphobilinogen Deaminase From Arabidopsis Thaliana 7e-39
3ecr_A364 Structure Of Human Porphobilinogen Deaminase Length 8e-37
3eq1_A361 The Crystal Structure Of Human Porphobilinogen Deam 3e-36
>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant) Crystal Structure After 2 Hours In A Flow Cell Determined By Time-Resolved Laue Diffraction Length = 313 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 153/239 (64%), Gaps = 3/239 (1%)
Query: 1   MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
           +A+++ +AD+AVHS+KD+P+  P G  L  I +REDPRDAF+SN+Y SL  LP  ++VGT
Sbjct: 68  VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGT 127
Query: 61  NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
           +SLRR+  +    P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR   
Sbjct: 128 SSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAAL 187
Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 180
            P   LPA GQGA+ IE   +     E+L  LNH+ +   V AERA++    G C++ + 
Sbjct: 188 PPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIG 247
Query: 181 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 239
           ++A      + EI LRA++  P+G +II  E  G     E +G+  AE L   GA EI+
Sbjct: 248 SYA---ELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL 303
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase Length = 313 Back     alignment and structure
>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible Multidomain Polymerase With A Single Catalytic Site Length = 313 Back     alignment and structure
>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane Synthase Determined By Mad Length = 313 Back     alignment and structure
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana Length = 320 Back     alignment and structure
>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase Length = 364 Back     alignment and structure
>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase At 2.8a Resolution Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1gtk_A313 Porphobilinogen deaminase; lyase, biosynthesis of 1e-113
3ecr_A364 Porphobilinogen deaminase; heme biosynthesis, porp 1e-101
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Length = 313 Back     alignment and structure
 Score =  325 bits (836), Expect = e-113
 Identities = 112/239 (46%), Positives = 153/239 (64%), Gaps = 3/239 (1%)

Query: 2   AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
           A+++ +AD+AVHS+KD+P+  P G  L  I +REDPRDAF+SN+Y SL  LP  ++VGT+
Sbjct: 69  ALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTS 128

Query: 62  SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
           SLRR+  +    P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR    
Sbjct: 129 SLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALP 188

Query: 122 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 181
           P   LPA GQGA+ IE   +     E+L  LNH+ +   V AERA++    G C++ + +
Sbjct: 189 PEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGS 248

Query: 182 FAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK 240
           +A + +    EI LRA++  P+G +II  E  G     E +G+  AE L   GA EI+ 
Sbjct: 249 YAELID---GEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1gtk_A313 Porphobilinogen deaminase; lyase, biosynthesis of 100.0
3ecr_A364 Porphobilinogen deaminase; heme biosynthesis, porp 100.0
3del_B242 Arginine binding protein; alpha and beta protein ( 96.06
3kzg_A237 Arginine 3RD transport system periplasmic binding 95.59
3qax_A268 Probable ABC transporter arginine-binding protein; 95.55
3tql_A227 Arginine-binding protein; transport and binding pr 95.06
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 94.58
3k4u_A245 Binding component of ABC transporter; structural g 94.27
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 94.12
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 94.09
2yln_A283 Putative ABC transporter, periplasmic binding Pro 94.07
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 93.67
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 93.65
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 93.54
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 93.48
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 93.34
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 93.22
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 93.2
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 92.38
3qsl_A346 Putative exported protein; unknown, structural gen 92.16
4eq9_A246 ABC transporter substrate-binding protein-amino A 91.81
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 91.72
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 91.46
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 91.16
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 91.1
1p99_A295 Hypothetical protein PG110; structural genomics, P 90.82
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 90.82
2vha_A287 Periplasmic binding transport protein; periplasmic 89.6
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 89.18
2q88_A257 EHUB, putative ABC transporter amino acid-binding 87.93
1xt8_A292 Putative amino-acid transporter periplasmic solut 87.67
3hv1_A268 Polar amino acid ABC uptake transporter substrate 87.15
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 86.06
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 86.04
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 85.88
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 85.34
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 84.87
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 84.51
1sw5_A275 Osmoprotection protein (PROX); binding-protein, co 84.32
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 84.08
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 82.57
4ef1_A246 Pheromone COB1/lipoprotein, YAEC family; periplasm 81.49
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-92  Score=649.37  Aligned_cols=240  Identities=47%  Similarity=0.742  Sum_probs=235.7

Q ss_pred             CccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEe
Q psy11424          1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKS   80 (245)
Q Consensus         1 ~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~   80 (245)
                      +||++|+||||||||||||+++|+||.|+||++|+||||+||++++.+|.+||+|++|||||+||++||+++|||++|++
T Consensus        68 ~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~~  147 (313)
T 1gtk_A           68 VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRS  147 (313)
T ss_dssp             HHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred             HHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEEe
Confidence            48999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             ccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhhcCCChhhHHH
Q psy11424         81 LRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQT  160 (245)
Q Consensus        81 iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~l~~~~t~~~  160 (245)
                      |||||+|||+||++|+|||||||+|||+|||+.++++++|++++|+|||||||||||||++|+++.++|+.|||++|+.+
T Consensus       148 lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~~~  227 (313)
T 1gtk_A          148 LRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALR  227 (313)
T ss_dssp             CCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHH
T ss_pred             CCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcceeeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhHHHHHH
Q psy11424        161 VKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK  240 (245)
Q Consensus       161 v~aER~~l~~L~ggC~~Piga~a~~~~~~~~~l~l~~~v~~~dG~~~~~~~~~~~~~~a~~lg~~la~~l~~~ga~~il~  240 (245)
                      +.|||+||+.|+|||++|||+||++   ++++|+|+|.|+++||++.++.+.+++.++++++|.++|++|+++|+++|++
T Consensus       228 ~~aERa~l~~L~GgC~~Piga~a~~---~~~~l~l~g~v~s~dG~~~~~~~~~g~~~~a~~lG~~la~~ll~~ga~~il~  304 (313)
T 1gtk_A          228 VTAERAMNTRLEGGCQVPIGSYAEL---IDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA  304 (313)
T ss_dssp             HHHHHHHHHHHTCCTTSCEEEEEEE---ETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcCcceeeEEE---ECCEEEEEEEEEcCCCCEEEEEEEEcCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999999999999999   7899999999999999999999999999999999999999999999999998


Q ss_pred             Hhh
Q psy11424        241 SYE  243 (245)
Q Consensus       241 ~~~  243 (245)
                      +++
T Consensus       305 ~~~  307 (313)
T 1gtk_A          305 EVY  307 (313)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            864
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A* Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1pdaa1217 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydr 2e-39
d1pdaa288 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hy 7e-18
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (337), Expect = 2e-39
 Identities = 82/152 (53%), Positives = 106/152 (69%)

Query: 1   MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
           +A+++ +AD+AVHS+KD+P+  P G  L  I +REDPRDAF+SN+Y SL  LP  ++VGT
Sbjct: 66  VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGT 125

Query: 61  NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
           +SLRR+  +    P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR   
Sbjct: 126 SSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAAL 185

Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPL 152
            P   LPA GQGA+ IE   +     E+L  L
Sbjct: 186 PPEISLPAVGQGAVGIECRLDDSRTRELLAAL 217
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 88 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1pdaa1217 Porphobilinogen deaminase (hydroxymethylbilane syn 100.0
d1pdaa288 Porphobilinogen deaminase (hydroxymethylbilane syn 99.94
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 96.09
d1p99a_255 Putative lipoprotein (NlpA family) {Staphylococcus 95.2
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 94.9
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 91.64
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 83.11
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-64  Score=441.77  Aligned_cols=152  Identities=54%  Similarity=0.857  Sum_probs=149.1

Q ss_pred             CccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEe
Q psy11424          1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKS   80 (245)
Q Consensus         1 ~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~   80 (245)
                      ++|++|+||||||||||||+++|+||.|+||++|+||||+||++++.++++||+|++|||||+||++||+++|||++|++
T Consensus        66 ~~Ll~~~iDiAVHS~KDlP~~~~~~l~i~a~~~R~d~rD~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~~~  145 (217)
T d1pdaa1          66 VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRS  145 (217)
T ss_dssp             HHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred             HHHHcCccceehhhhcccccccCCccccccccccCCcchhccccCcCCHhhCCCCCEecccchhHHHHHHHhCCCCceee
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhhcC
Q psy11424         81 LRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPL  152 (245)
Q Consensus        81 iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~l  152 (245)
                      |||||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|+++.++|++|
T Consensus       146 iRGNv~TRl~Kl~~g~~DaiILA~AGL~RL~l~~~i~~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i  217 (217)
T d1pdaa1         146 LRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL  217 (217)
T ss_dssp             CCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG
T ss_pred             cccchhhHHHHhhccCcCEEEeehhHHhhcCcchheeEEcChhhcCChHhhhheEEEEcCCCHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure