Psyllid ID: psy11457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK
cHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccEEEEEEEEEEEEcccccccEEEEEEEcccEEEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccEEEEEEEcccccEEEEEEEccccccc
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHcHHHHHEHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccHHHHHHcccccEEEEccccccccccccEEcccccEEcccccccccccccEEEEEEEEEEcccccccccccEEEEEEccccccEEEEEEEccHHccc
MLDIHSTFNnsmklkrkespvvgdvgDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRlqlkdiiptgmlrltkYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRldrtpfekvdnplvneyrnldltRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQkqddsksfdspsnsceavsssgppppssssrvpwdsdteaepdppdwtksvpedilrslsprekKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK
MLDIHSTfnnsmklkrkespvVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIAleslrerrrkDSRLNAflteaelnplcrrLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIqkrldrtpfekvdnplvneyrnldltrHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCeavsssgppppssssrvpWDSDTEaepdppdwtksvpedilrslsprekkrqevindrsalylvntsqhsaqiYDLVASSASERK
MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGaageafqraaaTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVsssgppppssssRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK
********************VVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALE***********LNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAV*****************RTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ**************************************************************************ALYLVNTSQHSAQIYDL*********
MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVD*ENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKV****VNEYRNLDLTRHKLIYEGNLQLR*****QKLIELYVLLLEDIIVLLQKQDDSKS*********************************************EDILR*****EKKRQEVINDRSALYLVNTSQHSAQIYD***S******
MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD********************************************TKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLV********
MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASS*****
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MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRAxxxxxxxxxxxxxxxxxxxxxHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
Q9NZN5 1544 Rho guanine nucleotide ex yes N/A 0.869 0.177 0.442 1e-54
Q8R4H2 1543 Rho guanine nucleotide ex yes N/A 0.869 0.177 0.439 8e-54
Q9Z1I6 919 Rho guanine nucleotide ex no N/A 0.895 0.306 0.405 9e-52
Q61210 920 Rho guanine nucleotide ex no N/A 0.895 0.306 0.411 1e-51
Q92888 912 Rho guanine nucleotide ex no N/A 0.895 0.309 0.408 4e-51
O15085 1522 Rho guanine nucleotide ex no N/A 0.895 0.185 0.409 1e-49
Q9ES67 1527 Rho guanine nucleotide ex no N/A 0.6 0.123 0.487 1e-49
Q60875 985 Rho guanine nucleotide ex no N/A 0.701 0.224 0.317 4e-23
B2DCZ9 961 Rho guanine nucleotide ex no N/A 0.701 0.229 0.313 3e-22
Q92974 986 Rho guanine nucleotide ex no N/A 0.701 0.224 0.305 6e-22
>sp|Q9NZN5|ARHGC_HUMAN Rho guanine nucleotide exchange factor 12 OS=Homo sapiens GN=ARHGEF12 PE=1 SV=1 Back     alignment and function desciption
 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/323 (44%), Positives = 188/323 (58%), Gaps = 49/323 (15%)

Query: 1    MLDIHSTFNNSMKL--KRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALES 58
            +L +H   N  MK   KR E+ V+  +G+ LL  F G   E  + AAATFCS Q  ALE 
Sbjct: 838  ILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEM 897

Query: 59   LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118
            ++ R++KDSR   F+ +AE NPLCRRLQLKDIIPT M RLTKYPLL  N+AKYT +   E
Sbjct: 898  IKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTE 956

Query: 119  LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLT 178
              KVK+A D  ++ILNYVNQAVKEAE++ RL + Q+RLD +  +  + P V E RNLDLT
Sbjct: 957  REKVKKAADHCRQILNYVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLT 1016

Query: 179  RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDD-------SKSFDSPSNSCE 231
            + K+I+EG L  ++   R K I+LY LLLEDI+VLLQKQDD       SK   S ++S  
Sbjct: 1017 KRKMIHEGPLVWKV--NRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKH 1074

Query: 232  AVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSAL 291
              S                                P   L ++  R     +V  D  AL
Sbjct: 1075 TFS--------------------------------PVIKLSTVLVR-----QVATDNKAL 1097

Query: 292  YLVNTSQHSAQIYDLVASSASER 314
            ++++ S + AQIY+LVA + SE+
Sbjct: 1098 FVISMSDNGAQIYELVAQTVSEK 1120
May play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13). Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13.
Homo sapiens (taxid: 9606)
>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 OS=Mus musculus GN=Arhgef12 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z1I6|ARHG1_RAT Rho guanine nucleotide exchange factor 1 OS=Rattus norvegicus GN=Arhgef1 PE=1 SV=1 Back     alignment and function description
>sp|Q61210|ARHG1_MOUSE Rho guanine nucleotide exchange factor 1 OS=Mus musculus GN=Arhgef1 PE=1 SV=2 Back     alignment and function description
>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1 PE=1 SV=2 Back     alignment and function description
>sp|O15085|ARHGB_HUMAN Rho guanine nucleotide exchange factor 11 OS=Homo sapiens GN=ARHGEF11 PE=1 SV=1 Back     alignment and function description
>sp|Q9ES67|ARHGB_RAT Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus GN=Arhgef11 PE=1 SV=1 Back     alignment and function description
>sp|Q60875|ARHG2_MOUSE Rho guanine nucleotide exchange factor 2 OS=Mus musculus GN=Arhgef2 PE=1 SV=4 Back     alignment and function description
>sp|B2DCZ9|ARHG2_PIG Rho guanine nucleotide exchange factor 2 OS=Sus scrofa GN=ARHGEF2 PE=2 SV=1 Back     alignment and function description
>sp|Q92974|ARHG2_HUMAN Rho guanine nucleotide exchange factor 2 OS=Homo sapiens GN=ARHGEF2 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
242008333391 LBC oncogene, putative [Pediculus humanu 0.879 0.708 0.556 3e-89
383852854 1678 PREDICTED: uncharacterized protein LOC10 0.888 0.166 0.539 1e-82
380014773 1675 PREDICTED: uncharacterized protein LOC10 0.882 0.165 0.536 2e-82
328780582 1676 PREDICTED: rho guanine nucleotide exchan 0.882 0.165 0.532 7e-82
350398669 1675 PREDICTED: hypothetical protein LOC10074 0.869 0.163 0.526 2e-81
340709994 1675 PREDICTED: rho guanine nucleotide exchan 0.869 0.163 0.526 3e-81
307198897 600 Rho guanine nucleotide exchange factor 1 0.895 0.47 0.512 3e-80
307180856 1554 Rho guanine nucleotide exchange factor 1 0.882 0.178 0.503 1e-78
322798294 659 hypothetical protein SINV_10145 [Solenop 0.882 0.421 0.5 1e-77
332028853 684 Rho guanine nucleotide exchange factor 1 0.895 0.412 0.493 1e-77
>gi|242008333|ref|XP_002424961.1| LBC oncogene, putative [Pediculus humanus corporis] gi|212508575|gb|EEB12223.1| LBC oncogene, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 222/320 (69%), Gaps = 43/320 (13%)

Query: 1   MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
           MLDIHS FNN+MK K+KE P+VGD+ D+LL MFDG AG+ FQRAA+ FC+ QQIALE L+
Sbjct: 109 MLDIHSRFNNAMKAKKKEDPLVGDISDILLAMFDGPAGDNFQRAASVFCANQQIALEQLK 168

Query: 61  ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
           ERRRKD++L+ FLTEAE NPLCRRLQLKD++PT M RLTKYPLLF NLAKY+     E  
Sbjct: 169 ERRRKDTKLSNFLTEAEGNPLCRRLQLKDMLPTVMQRLTKYPLLFENLAKYSPKGSEEEK 228

Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
            V++A++RSK+ILNYVNQAV+  ED  RLAEIQKRLD++ FEKVD+P+ NE++NLDL  H
Sbjct: 229 SVQQAVERSKDILNYVNQAVRAVEDHQRLAEIQKRLDKSAFEKVDHPMTNEFKNLDLRTH 288

Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDS-----KSFDSPSNSCEAVSS 235
           KLIYEG+L  RI   RQKLI+++VLLL D+I+LLQKQD+       + ++PS    A+S 
Sbjct: 289 KLIYEGSLNWRIG-NRQKLIDIHVLLLHDVIILLQKQDEKYVLKFYNVNTPSGGAPALS- 346

Query: 236 SGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVN 295
              P    SS +  D+                                   D++ALYLVN
Sbjct: 347 ---PIVKVSSVLVRDNAV---------------------------------DKTALYLVN 370

Query: 296 TSQHSAQIYDLVASSASERK 315
           TS + AQIYDLVASS +ERK
Sbjct: 371 TSHNLAQIYDLVASSPNERK 390

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852854|ref|XP_003701940.1| PREDICTED: uncharacterized protein LOC100879778 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380014773|ref|XP_003691392.1| PREDICTED: uncharacterized protein LOC100869176 [Apis florea] Back     alignment and taxonomy information
>gi|328780582|ref|XP_393610.4| PREDICTED: rho guanine nucleotide exchange factor 12 [Apis mellifera] Back     alignment and taxonomy information
>gi|350398669|ref|XP_003485267.1| PREDICTED: hypothetical protein LOC100745717 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340709994|ref|XP_003393584.1| PREDICTED: rho guanine nucleotide exchange factor 12-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307198897|gb|EFN79654.1| Rho guanine nucleotide exchange factor 12 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307180856|gb|EFN68692.1| Rho guanine nucleotide exchange factor 12 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322798294|gb|EFZ20040.1| hypothetical protein SINV_10145 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332028853|gb|EGI68879.1| Rho guanine nucleotide exchange factor 12 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
UNIPROTKB|E9PMR6 1441 ARHGEF12 "Rho guanine nucleoti 0.685 0.149 0.529 4.1e-57
UNIPROTKB|Q9NZN5 1544 ARHGEF12 "Rho guanine nucleoti 0.685 0.139 0.529 5.4e-57
UNIPROTKB|F1PET2 1543 ARHGEF12 "Uncharacterized prot 0.685 0.139 0.529 1.1e-56
UNIPROTKB|F1MZA2 1544 ARHGEF12 "Uncharacterized prot 0.685 0.139 0.529 1.1e-56
UNIPROTKB|F1S9S2 1534 ARHGEF12 "Uncharacterized prot 0.685 0.140 0.529 1.4e-56
UNIPROTKB|F1P1Y1 1508 ARHGEF12 "Uncharacterized prot 0.685 0.143 0.502 2.1e-56
UNIPROTKB|E9PTU1 1416 Arhgef12 "Protein Arhgef12" [R 0.685 0.152 0.524 2.7e-56
MGI|MGI:1916882 1543 Arhgef12 "Rho guanine nucleoti 0.685 0.139 0.524 3.8e-56
RGD|1305111 1546 Arhgef12 "Rho guanine nucleoti 0.685 0.139 0.524 3.9e-56
UNIPROTKB|H9KZZ51138 LOC100859194 "Uncharacterized 0.688 0.190 0.484 5.1e-56
UNIPROTKB|E9PMR6 ARHGEF12 "Rho guanine nucleotide exchange factor 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 4.1e-57, Sum P(2) = 4.1e-57
 Identities = 117/221 (52%), Positives = 148/221 (66%)

Query:     1 MLDIHSTFNNSMKL--KRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALES 58
             +L +H   N  MK   KR E+ V+  +G+ LL  F G           TFCS Q  ALE 
Sbjct:   735 ILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEM 794

Query:    59 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118
             ++ R++KDSR   F+ +AE NPLCRRLQLKDIIPT M RLTKYPLL  N+AKYT +   E
Sbjct:   795 IKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTE 853

Query:   119 LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLT 178
               KVK+A D  ++ILNYVNQAVKEAE++ RL + Q+RLD +  +  + P V E RNLDLT
Sbjct:   854 REKVKKAADHCRQILNYVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLT 913

Query:   179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDD 219
             + K+I+EG L  ++   R K I+LY LLLEDI+VLLQKQDD
Sbjct:   914 KRKMIHEGPLVWKV--NRDKTIDLYTLLLEDILVLLQKQDD 952
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA
UNIPROTKB|Q9NZN5 ARHGEF12 "Rho guanine nucleotide exchange factor 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PET2 ARHGEF12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZA2 ARHGEF12 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9S2 ARHGEF12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1Y1 ARHGEF12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTU1 Arhgef12 "Protein Arhgef12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1916882 Arhgef12 "Rho guanine nucleotide exchange factor (GEF) 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305111 Arhgef12 "Rho guanine nucleotide exchange factor (GEF) 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZZ5 LOC100859194 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 2e-28
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 8e-23
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 3e-20
cd13390149 cd13390, PH_LARG, Leukemia-associated Rho guanine 5e-19
cd13391142 cd13391, PH_PRG, PDZ Rho guanine nucleotide exchan 7e-18
cd13329101 cd13329, PH_RhoGEF, Rho guanine nucleotide exchang 8e-15
cd13392157 cd13392, PH_AKAP13, A-kinase anchoring protein 13 5e-07
COG5422 1175 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange 4e-05
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information 
 Score =  107 bits (270), Expect = 2e-28
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 2   LDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRE 61
           L++H  F   ++ + +E P +  +GD+ L          F +  +T+CS    ALE L++
Sbjct: 49  LELHQEFLEELEERLEEWPDIQRIGDIFLKFAP------FFKVYSTYCSNYPRALELLKK 102

Query: 62  RRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTK 121
            R+K+ R   FL E E +PLCR L L   +   + R+ +YPLL   L K+T  +  +   
Sbjct: 103 LRKKNPRFAKFLKECEASPLCRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYED 162

Query: 122 VKRALDRSKEILNYVNQ 138
           +K+AL+  KE+ + +N+
Sbjct: 163 LKKALEAIKEVASQINE 179

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>gnl|CDD|241541 cd13390, PH_LARG, Leukemia-associated Rho guanine nucleotide exchange factor Pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|241542 cd13391, PH_PRG, PDZ Rho guanine nucleotide exchange factor Pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|241483 cd13329, PH_RhoGEF, Rho guanine nucleotide exchange factor Pleckstrin homology domain Back     alignment and domain information
>gnl|CDD|241543 cd13392, PH_AKAP13, A-kinase anchoring protein 13 Pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
KOG3520|consensus 1167 100.0
KOG4424|consensus 623 100.0
KOG3523|consensus695 100.0
KOG4305|consensus 1029 99.97
KOG3521|consensus 846 99.97
KOG2996|consensus 865 99.96
KOG3518|consensus521 99.95
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.93
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.92
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.89
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.86
KOG3522|consensus 925 99.77
KOG3531|consensus 1036 99.73
KOG0689|consensus448 99.72
KOG2070|consensus 661 99.69
KOG3519|consensus756 99.66
KOG4240|consensus 1025 99.63
KOG3524|consensus 850 99.55
cd0122297 PH_clg Clg (common-site lymphoma/leukemia guanine 99.25
cd01261112 PH_SOS Son of Sevenless (SOS) Pleckstrin homology 99.17
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 99.08
cd01218104 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain 99.08
cd01232114 PH_TRIO Trio pleckstrin homology (PH) domain. Trio 99.01
cd01224109 PH_Collybistin Collybistin pleckstrin homology (PH 98.93
cd01219101 PH_FGD FGD (faciogenital dysplasia protein) plecks 98.89
cd01227133 PH_Dbs Dbs (DBL's big sister) pleckstrin homology 98.79
cd01221125 PH_ephexin Ephexin Pleckstrin homology (PH) domain 98.78
cd01223116 PH_Vav Vav pleckstrin homology (PH) domain. Vav pl 98.56
cd01226100 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin 98.33
cd0122896 PH_BCR-related BCR (breakpoint cluster region)-rel 98.19
KOG4269|consensus 1112 98.07
PF15405135 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A. 96.98
smart00233102 PH Pleckstrin homology domain. Domain commonly fou 96.62
PF00169104 PH: PH domain; InterPro: IPR001849 The pleckstrin 96.51
cd01255160 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM 96.47
KOG0931|consensus627 95.49
cd0082196 PH Pleckstrin homology (PH) domain. Pleckstrin hom 95.32
cd01229129 PH_etc2 Epithelial cell transforming 2 (ECT2) plec 94.84
cd01225111 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK- 94.62
PF15411116 PH_10: Pleckstrin homology domain 94.2
KOG3524|consensus 850 94.11
KOG3522|consensus 925 91.83
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 91.74
cd01233100 Unc104 Unc-104 pleckstrin homology (PH) domain. Un 90.47
cd0124691 PH_oxysterol_bp Oxysterol binding protein (OSBP) P 90.38
cd0124791 PH_GPBP Goodpasture antigen binding protein (GPBP) 90.24
cd01256110 PH_dynamin Dynamin pleckstrin homology (PH) domain 87.08
KOG0930|consensus395 86.72
cd01252125 PH_cytohesin Cytohesin Pleckstrin homology (PH) do 84.81
cd0126595 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain 83.36
cd0126096 PH_CNK Connector enhancer of KSR (Kinase suppresso 83.22
cd0125094 PH_centaurin Centaurin Pleckstrin homology (PH) do 82.79
>KOG3520|consensus Back     alignment and domain information 
Probab=100.00  E-value=6e-66  Score=520.82  Aligned_cols=270  Identities=49%  Similarity=0.739  Sum_probs=259.6

Q ss_pred             CHHHHHHHHHHHHHhHhcCCC-CCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457          1 MLDIHSTFNNSMKLKRKESPV-VGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN   79 (315)
Q Consensus         1 ll~~H~~fl~~L~~~~~~~~~-v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~   79 (315)
                      |+++|..|+++|+++++++.. +..|||+++++|+|.+|++|+++|++||++|..|++.|+.+++++++|++|+++++++
T Consensus       441 L~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~  520 (1167)
T KOG3520|consen  441 LIEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN  520 (1167)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence            689999999999999999987 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457         80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT  159 (315)
Q Consensus        80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~  159 (315)
                      |.||||+|+++|+..|||||||||||++|+|||.++..|++.|++|++.+|+|+.+||++|+++|+.+||.+||+|+|.+
T Consensus       521 p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~  600 (1167)
T KOG3520|consen  521 PVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAK  600 (1167)
T ss_pred             hHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCC
Q psy11457        160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPP  239 (315)
Q Consensus       160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~  239 (315)
                      ++....+  ..+|+++||+.|+|||+|.|+|+.+  ++|.+++|++||+|+||+++++|+||+|+++.            
T Consensus       601 s~~~~~~--~~~F~kldLt~rkLihdG~Ltwk~~--~gk~~dv~vlLLtD~LvlLqeqD~Kyifksl~------------  664 (1167)
T KOG3520|consen  601 SLSKYKN--GEEFRKLDLTRRKLIHDGPLTWKTA--RGKTKDVHVLLLTDILVLLQEKDQKYIFKSLD------------  664 (1167)
T ss_pred             hhhhccc--cchhhhhhhhhhheeccCceEEeec--cCchhhhHHHHHHHHHHHhhhcCceeEeeccc------------
Confidence            9888776  7889999999999999999999998  66778999999999999999999999999642            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457        240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK  315 (315)
Q Consensus       240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk  315 (315)
                                       .++|||+       |++|     |||+||+|++|||||+++.++||||||+|+|++||+
T Consensus       665 -----------------~~spVis-------L~~l-----ivRevAtd~ka~FlIs~s~~~pqmYEL~a~T~sern  711 (1167)
T KOG3520|consen  665 -----------------KKSPVIS-------LQKL-----IVREVATDEKAFFLISMSDQGPEMYELVAQSKSERN  711 (1167)
T ss_pred             -----------------cCCCcee-------hHHH-----HHHHHhccccceEEEecCCCCCeeEEEecCCHHHHH
Confidence                             1459999       9999     999999999999999999999999999999999986

>KOG4424|consensus Back     alignment and domain information
>KOG3523|consensus Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG0689|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain Back     alignment and domain information
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain Back     alignment and domain information
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain Back     alignment and domain information
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A Back     alignment and domain information
>smart00233 PH Pleckstrin homology domain Back     alignment and domain information
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] Back     alignment and domain information
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain Back     alignment and domain information
>KOG0931|consensus Back     alignment and domain information
>cd00821 PH Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain Back     alignment and domain information
>PF15411 PH_10: Pleckstrin homology domain Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain Back     alignment and domain information
>KOG0930|consensus Back     alignment and domain information
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1txd_A385 Crystal Structure Of The Dh/ph Domains Of Leukemia- 1e-51
3p6a_A377 Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge 3e-48
3odo_A375 Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge 4e-48
3odx_A417 Crystal Structure Of An N-Terminally Truncated Link 4e-48
3odw_A536 Crystal Structure Of The Linker-DhPH DOMAINS OF P11 9e-48
1xcg_A368 Crystal Structure Of Human Rhoa In Complex With DhP 3e-47
3kz1_A383 Crystal Structure Of The Complex Of Pdz-Rhogef DhPH 4e-47
3t06_A418 Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF 5e-47
3t06_A 418 Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF 6e-04
1ki1_B352 Guanine Nucleotide Exchange Region Of Intersectin I 4e-12
3qbv_B351 Structure Of Designed Orthogonal Interaction Betwee 7e-12
3jzy_A 510 Crystal Structure Of Human Intersectin 2 C2 Domain 1e-10
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 5e-10
3gf9_A295 Crystal Structure Of Human Intersectin 2 Rhogef Dom 4e-09
2z0q_A352 Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) 2e-05
3eo2_A231 Crystal Structure Of The Rhogef Domain Of Human Neu 5e-05
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of Leukemia-associated Rhogef Length = 385 Back     alignment and structure 
Iteration: 1

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/316 (42%), Positives = 183/316 (57%), Gaps = 35/316 (11%)
Query: 1   MLDIHSTFNNSMKL--KRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALES 58
           +L +H   N  MK   KR E+ V+  +G+ LL  F G           TFCS Q  ALE 
Sbjct: 75  ILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEM 134
Query: 59  LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118
           ++ R++KDSR   F+ +AE NPLCRRLQLKDIIPT M RLTKYPLL  N+AKYT +   E
Sbjct: 135 IKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTE 193
Query: 119 LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLT 178
             KVK+A D  ++ILN+VNQAVKEAE++ RL + Q+RLD +  +  + P V E RNLDLT
Sbjct: 194 REKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLT 253
Query: 179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXX 238
           + K+I+EG L  ++   R K I+LY LLLEDI+VLLQKQDD       S    +      
Sbjct: 254 KRKMIHEGPLVWKV--NRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILAST----- 306
Query: 239 XXXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ 298
                       +D++    P     +V   ++R          +V  D  AL++++ S 
Sbjct: 307 ------------ADSKHTFSPVIKLSTV---LVR----------QVATDNKALFVISMSD 341
Query: 299 HSAQIYDLVASSASER 314
           + AQIY+LVA + SE+
Sbjct: 342 NGAQIYELVAQTVSEK 357
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef (R399e Mutant) Length = 377 Back     alignment and structure
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef Length = 375 Back     alignment and structure
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH DOMAINS OF P115-Rhogef Length = 417 Back     alignment and structure
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF P115-Rhogef Length = 536 Back     alignment and structure
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 368 Back     alignment and structure
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 383 Back     alignment and structure
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH N-Terminal Regulatory Elements In Complex With Human Rhoa Length = 418 Back     alignment and structure
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH N-Terminal Regulatory Elements In Complex With Human Rhoa Length = 418 Back     alignment and structure
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 Back     alignment and structure
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295 Back     alignment and structure
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) Length = 352 Back     alignment and structure
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human Neuroepithelial Cell- Transforming Gene 1 Protein Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1xcg_A368 PDZ-rhogef, RHO guanine nucleotide exchange factor 6e-68
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-04
1txd_A385 RHO guanine nucleotide exchange factor 12; helical 1e-66
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 7e-06
3t06_A418 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-65
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-08
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 1e-64
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 5e-06
3odw_A536 RHO guanine nucleotide exchange factor 1; regulati 1e-58
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 1e-07
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 3e-47
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 5e-47
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 6e-38
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 1e-37
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 1e-36
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 3e-26
2dfk_A402 Collybistin II; DH domain, PH domain, cell cycle; 8e-26
2pz1_A466 RHO guanine nucleotide exchange factor 4; helical 2e-25
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 2e-24
1foe_A377 T-lymphoma invasion and metastasis inducing protei 4e-18
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 8e-17
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 5e-11
2rgn_B354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 1e-10
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1kz7_A353 Guanine nucleotide exchange factor DBS; guanine nu 1e-06
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
 Score =  215 bits (549), Expect = 6e-68
 Identities = 125/316 (39%), Positives = 186/316 (58%), Gaps = 33/316 (10%)

Query: 1   MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
           +++IH+++  +MK  R+E P++ ++ DL+L  FDG A E  Q+ AA FCS Q IALE ++
Sbjct: 72  LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 131

Query: 61  ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
            ++RK+SR   F+ EAE +P CRRLQL+D+I + M RLTKYPLL  ++ K+T    +E  
Sbjct: 132 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191

Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
           K+ RA D+ +EIL YVN+AVK+ E++HRL   QKRLD T  E+  NPL  E+++LDLT  
Sbjct: 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 251

Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPP 240
           K+I+EG L  R   ++ K ++L+VLLLED++VLLQKQD+                     
Sbjct: 252 KMIHEGPLTWR--ISKDKTLDLHVLLLEDLLVLLQKQDEKLLL----------------- 292

Query: 241 PSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTS-QH 299
              S      SD++    P              L       + V  D+ A +++ TS   
Sbjct: 293 KCHSKTAVGSSDSKQTFSPV-------------LKLNAVLIRSVATDKRAFFIICTSKLG 339

Query: 300 SAQIYDLVASSASERK 315
             QIY+LVA ++S++ 
Sbjct: 340 PPQIYELVALTSSDKN 355
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 100.0
3t06_A418 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
1xcg_A368 PDZ-rhogef, RHO guanine nucleotide exchange factor 100.0
3odw_A536 RHO guanine nucleotide exchange factor 1; regulati 100.0
1txd_A385 RHO guanine nucleotide exchange factor 12; helical 100.0
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 100.0
2dfk_A402 Collybistin II; DH domain, PH domain, cell cycle; 100.0
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 100.0
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 100.0
2pz1_A466 RHO guanine nucleotide exchange factor 4; helical 100.0
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 100.0
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 100.0
1foe_A377 T-lymphoma invasion and metastasis inducing protei 100.0
1kz7_A353 Guanine nucleotide exchange factor DBS; guanine nu 100.0
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 100.0
2rgn_B354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 100.0
1nty_A311 Triple functional domain protein; DBL, pleckstrin, 100.0
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 99.97
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 99.97
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 99.96
1zc3_B113 Exocyst complex protein EXO84; exocytosis, small G 98.93
3qwm_A140 Iqsec1, IQ motif and SEC7 domain-containing protei 98.73
1fho_A119 UNC-89; pleckstrin homology domain, electrostatics 98.52
1v61_A132 RAC/CDC42 guanine nucleotide exchange factor (GEF) 97.69
1dyn_A125 Dynamin; signal transduction protein; 2.20A {Homo 93.72
3rcp_A103 Pleckstrin homology domain-containing family A ME; 93.6
1x1g_A129 Pleckstrin 2; PH domain, structural genomics, rike 92.66
2i5f_A109 Pleckstrin; PH domain, protein-inositol phosphate 92.35
2d9y_A117 Pleckstrin homology domain-containing protein fami 91.65
2yry_A122 Pleckstrin homology domain-containing family A mem 90.34
1x05_A129 Pleckstrin; PH domain, structural genomics, NPPSFA 90.19
1upq_A123 PEPP1; PH domain, phosphoinositide binding, signal 90.15
1v89_A118 Hypothetical protein KIAA0053; pleckstrin homology 90.03
2rsg_A94 Collagen type IV alpha-3-binding protein; pleckstr 89.99
2lul_A164 Tyrosine-protein kinase TEC; structural genomics, 89.92
2rlo_A128 Centaurin-gamma 1; split PH domain, alternative sp 89.75
2dkp_A128 Pleckstrin homology domain-containing family A mem 89.73
1unq_A125 RAC-alpha serine/threonine kinase; transferase, pl 89.59
2dn6_A115 KIAA0640 protein; PH domain, structural genomics, 89.38
4gou_A518 EHRGS-rhogef; RGS domain, DH domain, PH domain, RH 88.78
1pls_A113 Pleckstrin homology domain; phosphorylation; NMR { 88.13
4h8s_A407 DCC-interacting protein 13-beta; BAR domain, pleck 87.74
1btk_A169 Bruton'S tyrosine kinase; transferase, PH domain, 87.44
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 87.04
1v88_A130 Oxysterol binding protein-related protein 8; vesic 86.32
2w2x_D124 1-phosphatidylinositol-4,5-bisphosphate phosphodie 86.08
1x1f_A149 Signal-transducing adaptor protein 1; docking prot 86.07
2cod_A115 Centaurin-delta 1; ARF GAP and RHO GAP with ankyri 86.02
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 85.87
1u5f_A148 SRC-associated adaptor protein; PH domain of SKAP- 85.07
1fgy_A127 GRP1; PH domain, signaling protein; HET: 4IP; 1.50 83.74
2cof_A107 Protein KIAA1914; PH domain, structural genomics, 83.31
3cxb_B112 Pleckstrin homology domain-containing family M mem 82.52
4a6h_A120 Phosphatidylinositol 4,5-bisphosphate-binding Pro 81.75
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 81.22
2dhk_A119 TBC1 domain family member 2; PH domain, paris-1, s 80.99
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
Probab=100.00  E-value=4.8e-53  Score=400.97  Aligned_cols=282  Identities=44%  Similarity=0.703  Sum_probs=249.3

Q ss_pred             CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457          1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN   79 (315)
Q Consensus         1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~   79 (315)
                      |+++|+.||..|+++..++ +.+..||++|++++++..|+.|.++|..||+||+.|.+.+++++++|+.|+.|+++++.+
T Consensus        78 I~~~h~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~  157 (377)
T 3p6a_A           78 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR  157 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence            5789999999999988765 567899999999998877778889999999999999999999999999999999999999


Q ss_pred             CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457         80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT  159 (315)
Q Consensus        80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~  159 (315)
                      |.|++++|.+||++|||||+||||||++|+|+||+ |+|+..+..|++.+++++..||+.++++|+..+|.+|+++|++.
T Consensus       158 ~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~  236 (377)
T 3p6a_A          158 PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLS  236 (377)
T ss_dssp             GGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH
T ss_pred             cccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999997 89999999999999999999999999999999999999999976


Q ss_pred             CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCC
Q psy11457        160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPP  239 (315)
Q Consensus       160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~  239 (315)
                      +.....++++..+.++++++|+|+++|.+.++.+  +++..++++|||+|+||+|++++++|+|+.+..+....  .+.+
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~--~~~k  312 (377)
T 3p6a_A          237 HLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT--PDGK  312 (377)
T ss_dssp             HHHHCCCGGGSSSTTCCCTTSCEEEEEEEEEESS--SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC----------
T ss_pred             cccccccchhhhhcccccccceEEEECCcEEEec--CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccC--cccc
Confidence            5444455677778899999999999999998876  44677999999999999999999999999654322111  1222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457        240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK  315 (315)
Q Consensus       240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk  315 (315)
                      ...                +|+|+       |+++     ++++++++.++||+|++++.++++|+|+|+|++||.
T Consensus       313 ~~~----------------~~~i~-------l~~~-----~v~e~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~  360 (377)
T 3p6a_A          313 TML----------------RPVLR-------LTSA-----MTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERK  360 (377)
T ss_dssp             -CS----------------CSEEE-------GGGE-----EEEECTTCTTEEEEEETTCTTCCEEEEECSSHHHHH
T ss_pred             CCC----------------CCeEe-------chhh-----hccccccccceeEEEecCCCCCeeEEEecCCHHHHH
Confidence            222                38999       9999     999999999999999998889999999999999973
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Back     alignment and structure
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens} Back     alignment and structure
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 Back     alignment and structure
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Back     alignment and structure
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Back     alignment and structure
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Back     alignment and structure
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Back     alignment and structure
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Back     alignment and structure
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Back     alignment and structure
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Back     alignment and structure
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Back     alignment and structure
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Back     alignment and structure
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Back     alignment and structure
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} Back     alignment and structure
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Back     alignment and structure
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Back     alignment and structure
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Back     alignment and structure
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Back     alignment and structure
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1xcga1228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 1e-32
d1xcga1 228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 9e-05
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 2e-28
d1txda1 234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 6e-06
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 2e-22
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 2e-18
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 1e-17
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 3e-16
d1xcga2140 b.55.1.1 (A:942-1081) Rho guanine nucleotide excha 4e-16
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 2e-14
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 5e-12
d1ntya1184 a.87.1.1 (A:1231-1414) Triple functional domain pr 4e-11
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 4e-11
d1txda2114 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exch 2e-09
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 1e-32
 Identities = 77/157 (49%), Positives = 112/157 (71%)

Query: 1   MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
           +++IH+++  +MK  R+E P++ ++ DL+L  FDG A E  Q+ AA FCS Q IALE ++
Sbjct: 72  LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 131

Query: 61  ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
            ++RK+SR   F+ EAE +P CRRLQL+D+I + M RLTKYPLL  ++ K+T    +E  
Sbjct: 132 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191

Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLD 157
           K+ RA D+ +EIL YVN+AVK+ E++HRL   QKRLD
Sbjct: 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 228
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.97
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.96
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.96
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 99.94
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 99.93
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.91
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.91
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.88
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.86
d1txda2114 Rho guanine nucleotide exchange factor 12 {Human ( 99.8
d1xcga2140 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.72
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 99.39
d1ki1b2142 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.3
d1zc3b1109 Exocyst complex protein EXO84 {Rat (Rattus norvegi 99.28
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.27
d1ntya2121 Triple functional domain protein TRIO {Human (Homo 99.0
d1fhoa_119 UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 98.82
d1kz7a2147 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 98.69
d1v61a_132 Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ 98.67
d1foea2162 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 97.29
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 94.65
d1x1ga1116 Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} 94.35
d1upqa_107 Phosphoinositol 3-phosphate binding protein-1, PEP 94.01
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 93.79
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 93.38
d2coda1102 Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 93.22
d2cofa195 KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} 91.94
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 91.85
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 91.3
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 90.81
d1wgqa_109 FYVE, RhoGEF and PH domain containing protein 6, F 90.18
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 89.83
d1u5ea1209 Src-associated adaptor protein Skap2 {Mouse (Mus m 89.21
d2elba2101 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 86.86
d1faoa_100 Dual adaptor of phosphotyrosine and 3-phosphoinosi 86.53
d2dyna_111 Dynamin {Human (Homo sapiens) [TaxId: 9606]} 86.07
d1u5da1106 Src kinase-associated phosphoprotein SKAP55 (SCAP1 86.03
d1u5fa1111 Src-associated adaptor protein Skap2 {Mouse (Mus m 86.0
d1w1ha_147 3-phosphoinositide dependent protein kinase-1 {Hum 84.46
d1wi1a_126 Calcium-dependent activator protein for secretion, 82.39
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-31  Score=230.80  Aligned_cols=157  Identities=49%  Similarity=0.810  Sum_probs=152.2

Q ss_pred             CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457          1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP   80 (315)
Q Consensus         1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~   80 (315)
                      |+++|+.|+..|+++..+|+.+..||++|+.++++..+..+.++|..||++++.+..++..++++++.|+.|+++++..|
T Consensus        72 l~~~h~~fl~~L~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~~~  151 (228)
T d1xcga1          72 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP  151 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhcCc
Confidence            57899999999999999999999999999999988777788899999999999999999999999999999999999999


Q ss_pred             cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11457         81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLD  157 (315)
Q Consensus        81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~  157 (315)
                      .|++++|.+||+.|+||++||++||++|+++||++|+|+..+..|++.+++++..||+.++.+++..+|.+|+++||
T Consensus       152 ~~~~~~l~~~l~~P~qRl~rY~llL~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~e~~~~l~~l~~~ld  228 (228)
T d1xcga1         152 QCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD  228 (228)
T ss_dssp             GGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ccccCCHHHHHhhHHHHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure