Psyllid ID: psy11462

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MKREGRQDMRKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKSKAGNLDF
ccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEcccccccEEEEEEEEEEEEcccccccccEEEcccccccccccccEEEEEEEccccccEEEcccEEEEEEcccccccccEEEEEEcccccEEEEEEccEEcccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccHHHHHHHccccccccc
cccEEEEEEccEEEccccccccccccccccccccccccEEEEEEEcccccccccEEEccccccccccccEEEEEEEEEEEcccccccccEEEEccccccccccccEEEEEEEcccccEEcccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccc
MKREGRQDMRKRAILRNlqgekgskqditlssnqQVHTVVVSLEELYRGCVKLltvpvqeidpcsvqlniintSKIVHikikpglpehtvfkfskepleystssevivitkdkphdvfwregadlhmKKNVSLKealtgfsftvttlddrilhipitdlttcnqsmkviksegmphveephlrgdlfihlsidypkflspDLRKTLSTLLdedkgknnttrQILDSKlkskagnldf
mkregrqdmrkrailrnlqgekgskqditlssnqqVHTVVVSLEELYRGCVKLLTvpvqeidpCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLStlldedkgknnttrqildsklkskagnldf
MKREGRQDMRKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKSKAGNLDF
**********************************QVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRK*********************************
****GRQ*MRKRA*************************VVVSLEELYRGCVKLLTVPV************INTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTL********************KLKSKAG****
*********RKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKSKAGNLDF
*KREGRQDMRKRAILRNLQGE******ITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDE**********I*DSKLKSKAG*LDF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKREGRQDMRKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKSKAGNLDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
P25685340 DnaJ homolog subfamily B yes N/A 0.789 0.55 0.329 6e-21
Q3MI00340 DnaJ homolog subfamily B yes N/A 0.725 0.505 0.338 1e-20
Q9QYJ3340 DnaJ homolog subfamily B yes N/A 0.725 0.505 0.338 2e-20
Q9D832337 DnaJ homolog subfamily B no N/A 0.742 0.522 0.333 4e-20
O89114348 DnaJ homolog subfamily B no N/A 0.725 0.494 0.327 6e-20
Q5BIP8348 DnaJ homolog subfamily B no N/A 0.725 0.494 0.327 6e-20
O75953348 DnaJ homolog subfamily B no N/A 0.725 0.494 0.327 7e-20
Q2KIT4337 DnaJ homolog subfamily B no N/A 0.772 0.543 0.321 9e-20
P59910316 DnaJ homolog subfamily B no N/A 0.784 0.588 0.336 7e-19
Q5R8J8337 DnaJ homolog subfamily B no N/A 0.772 0.543 0.316 2e-18
>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4 Back     alignment and function desciption
 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 10/197 (5%)

Query: 16  RNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSK 75
           R+ Q     KQD  ++     H + VSLEE+Y GC K + +  + ++P     +I N  K
Sbjct: 150 RSAQEPARKKQDPPVT-----HDLRVSLEEIYSGCTKKMKISHKRLNPDGK--SIRNEDK 202

Query: 76  IVHIKIKPGLPEHTVFKFSKEPLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSL 133
           I+ I++K G  E T   F KE  + S +  ++++ + KDKPH++F R+G+D+     +SL
Sbjct: 203 ILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISL 262

Query: 134 KEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSID 193
           +EAL G +  V TLD R + +   D+       KV   EG+P  + P  RGDL I   + 
Sbjct: 263 REALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVI 321

Query: 194 YPKFLSPDLRKTLSTLL 210
           +P+ +    R  L  +L
Sbjct: 322 FPERIPQTSRTVLEQVL 338
Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP.
Homo sapiens (taxid: 9606)
>sp|Q3MI00|DNJB1_BOVIN DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3 Back     alignment and function description
>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3 Back     alignment and function description
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1 Back     alignment and function description
>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1 Back     alignment and function description
>sp|Q5BIP8|DNJB5_BOVIN DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1 Back     alignment and function description
>sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=1 SV=1 Back     alignment and function description
>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|P59910|DJB13_HUMAN DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1 Back     alignment and function description
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
296004500 402 heat shock protein, putative [Plasmodium 0.700 0.412 0.390 1e-24
383854680 369 PREDICTED: dnaJ homolog subfamily B memb 0.666 0.428 0.414 5e-23
110764205 370 PREDICTED: dnaJ homolog subfamily B memb 0.831 0.532 0.342 3e-22
307172180 376 DnaJ-like protein subfamily B member 13 0.805 0.507 0.343 5e-22
380028213 370 PREDICTED: LOW QUALITY PROTEIN: dnaJ hom 0.670 0.429 0.404 6e-22
340725017 370 PREDICTED: LOW QUALITY PROTEIN: dnaJ hom 0.687 0.440 0.395 1e-21
156550486 386 PREDICTED: dnaJ homolog subfamily B memb 0.628 0.386 0.387 2e-21
395513015 421 PREDICTED: dnaJ homolog subfamily B memb 0.725 0.408 0.355 2e-21
350422099 362 PREDICTED: dnaJ homolog subfamily B memb 0.831 0.544 0.347 2e-21
318056058313 DnaJ-like protein subfamily b member 13 0.738 0.559 0.362 2e-21
>gi|296004500|ref|XP_001351570.2| heat shock protein, putative [Plasmodium falciparum 3D7] gi|225631656|emb|CAD51377.2| heat shock protein, putative [Plasmodium falciparum 3D7] Back     alignment and taxonomy information
 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 8/174 (4%)

Query: 41  VSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEY 100
           V+LEELY GC K L V  +      V LN    +  + + +KPG  E T   F  E  + 
Sbjct: 231 VTLEELYTGCRKKLKVTRKRF----VGLNSYEDNTFITVDVKPGWSEGTKINFHGEGEQS 286

Query: 101 STS---SEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT 157
           S +    +++ I K KPHD F REG +L  K  + L +ALTGF F++ +LD+R +++ + 
Sbjct: 287 SPNEQPGDLVFIIKTKPHDRFIREGNNLIYKCYLPLDKALTGFQFSIKSLDNRDINVRVD 346

Query: 158 DLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
           D+   N S K+I +EGMP+ + P ++GDLFI   I +PK LSP+ ++TL   L+
Sbjct: 347 DIINPN-SKKIITNEGMPYSKSPSVKGDLFIEFDIVFPKKLSPEQKRTLKETLE 399

Source: Plasmodium falciparum 3D7

Species: Plasmodium falciparum

Genus: Plasmodium

Family:

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota
>gi|383854680|ref|XP_003702848.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110764205|ref|XP_001123348.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307172180|gb|EFN63705.1| DnaJ-like protein subfamily B member 13 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380028213|ref|XP_003697802.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily B member 13-like [Apis florea] Back     alignment and taxonomy information
>gi|340725017|ref|XP_003400871.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily B member 13-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156550486|ref|XP_001601548.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|395513015|ref|XP_003760727.1| PREDICTED: dnaJ homolog subfamily B member 1 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|350422099|ref|XP_003493056.1| PREDICTED: dnaJ homolog subfamily B member 13-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|318056058|ref|NP_001187871.1| DnaJ-like protein subfamily b member 13 [Ictalurus punctatus] gi|308324196|gb|ADO29233.1| DnaJ-like protein subfamily b member 13 [Ictalurus punctatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
GENEDB_PFALCIPARUM|PFE0055c402 PFE0055c "heat shock protein, 0.700 0.412 0.390 6.6e-26
UNIPROTKB|Q8I489402 PFE0055c "Heat shock protein, 0.700 0.412 0.390 6.6e-26
UNIPROTKB|B4DX52240 DNAJB1 "cDNA FLJ59093, highly 0.789 0.779 0.324 1.6e-22
UNIPROTKB|P25685340 DNAJB1 "DnaJ homolog subfamily 0.789 0.55 0.324 1.6e-22
ZFIN|ZDB-GENE-040801-90335 dnajb1a "DnaJ (Hsp40) homolog, 0.810 0.573 0.315 1.6e-22
UNIPROTKB|E1BWR7345 DNAJB5 "Uncharacterized protei 0.708 0.486 0.329 2.6e-22
UNIPROTKB|Q3MI00340 DNAJB1 "DnaJ homolog subfamily 0.721 0.502 0.335 2.6e-22
UNIPROTKB|E2R9D7340 DNAJB1 "Uncharacterized protei 0.721 0.502 0.335 3.4e-22
MGI|MGI:1931874340 Dnajb1 "DnaJ (Hsp40) homolog, 0.721 0.502 0.335 4.3e-22
UNIPROTKB|F1SCF5339 DNAJB1 "Uncharacterized protei 0.721 0.504 0.329 5.5e-22
GENEDB_PFALCIPARUM|PFE0055c PFE0055c "heat shock protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 68/174 (39%), Positives = 102/174 (58%)

Query:    41 VSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEY 100
             V+LEELY GC K L V  +      V LN    +  + + +KPG  E T   F  E  + 
Sbjct:   231 VTLEELYTGCRKKLKVTRKRF----VGLNSYEDNTFITVDVKPGWSEGTKINFHGEGEQS 286

Query:   101 STSSE---VIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT 157
             S + +   ++ I K KPHD F REG +L  K  + L +ALTGF F++ +LD+R +++ + 
Sbjct:   287 SPNEQPGDLVFIIKTKPHDRFIREGNNLIYKCYLPLDKALTGFQFSIKSLDNRDINVRVD 346

Query:   158 DLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
             D+   N S K+I +EGMP+ + P ++GDLFI   I +PK LSP+ ++TL   L+
Sbjct:   347 DIINPN-SKKIITNEGMPYSKSPSVKGDLFIEFDIVFPKKLSPEQKRTLKETLE 399
GO:0020011 "apicoplast" evidence=RCA
UNIPROTKB|Q8I489 PFE0055c "Heat shock protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|B4DX52 DNAJB1 "cDNA FLJ59093, highly similar to DnaJ homolog subfamily B member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P25685 DNAJB1 "DnaJ homolog subfamily B member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-90 dnajb1a "DnaJ (Hsp40) homolog, subfamily B, member 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWR7 DNAJB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MI00 DNAJB1 "DnaJ homolog subfamily B member 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9D7 DNAJB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1931874 Dnajb1 "DnaJ (Hsp40) homolog, subfamily B, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCF5 DNAJB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 3e-34
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 1e-22
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 1e-22
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 7e-20
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 3e-15
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 4e-11
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 6e-11
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-10
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 2e-09
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 1e-08
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 1e-08
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 5e-07
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 5e-07
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 2e-06
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-06
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 3e-06
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 4e-06
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-06
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 5e-06
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 2e-05
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 3e-05
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 4e-05
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 6e-05
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 7e-05
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 3e-04
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 0.001
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 0.002
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  119 bits (302), Expect = 3e-34
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 36  VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSK 95
            + + ++LEE Y G  K + +P +           +   K + +KI  G+ +    +   
Sbjct: 4   RYDLELTLEEAYFGKEKEIKIPRKVT--------RVREKKTLTVKIPAGVDDGQRLRLRG 55

Query: 96  E---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI- 151
           E           ++ V+ + KPH VF R+G DL+ +  +SL EAL G    V TL  ++ 
Sbjct: 56  EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGGKVK 115

Query: 152 LHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFL 198
           L IP     T   ++  +K +GMP +     RGDL++ + +++PK L
Sbjct: 116 LKIP---PGTQPGTVLRLKGKGMPRL-RGGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
KOG0712|consensus337 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.89
KOG0713|consensus336 99.31
PRK14282369 chaperone protein DnaJ; Provisional 99.23
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.19
PRK14290365 chaperone protein DnaJ; Provisional 99.13
PRK14294366 chaperone protein DnaJ; Provisional 99.09
PRK14298377 chaperone protein DnaJ; Provisional 99.08
PRK14284391 chaperone protein DnaJ; Provisional 99.08
PRK14285365 chaperone protein DnaJ; Provisional 99.06
PRK10767371 chaperone protein DnaJ; Provisional 99.03
PRK14299291 chaperone protein DnaJ; Provisional 99.02
PRK14291382 chaperone protein DnaJ; Provisional 99.01
PRK14300372 chaperone protein DnaJ; Provisional 99.01
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 98.99
PRK14287371 chaperone protein DnaJ; Provisional 98.97
PRK14288369 chaperone protein DnaJ; Provisional 98.95
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 98.94
PRK14301373 chaperone protein DnaJ; Provisional 98.94
PRK14281397 chaperone protein DnaJ; Provisional 98.9
PRK14286372 chaperone protein DnaJ; Provisional 98.9
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.9
PRK14279392 chaperone protein DnaJ; Provisional 98.89
PRK14295389 chaperone protein DnaJ; Provisional 98.88
PRK14276380 chaperone protein DnaJ; Provisional 98.86
PRK14278378 chaperone protein DnaJ; Provisional 98.85
PRK14280376 chaperone protein DnaJ; Provisional 98.85
PRK14293374 chaperone protein DnaJ; Provisional 98.84
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.81
PRK14292371 chaperone protein DnaJ; Provisional 98.8
PRK14297380 chaperone protein DnaJ; Provisional 98.8
PRK14296372 chaperone protein DnaJ; Provisional 98.79
PRK14277386 chaperone protein DnaJ; Provisional 98.77
PRK14283378 chaperone protein DnaJ; Provisional 98.74
PRK14289386 chaperone protein DnaJ; Provisional 98.73
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 98.63
KOG0715|consensus288 98.6
KOG0714|consensus306 98.54
KOG0712|consensus337 97.54
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 84.06
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-49  Score=354.13  Aligned_cols=221  Identities=22%  Similarity=0.300  Sum_probs=198.8

Q ss_pred             ChhhHhhhhhcCCCC-C--CCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEec----CCCCc---------------
Q psy11462         10 RKRAILRNLQGEKGS-K--QDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEID----PCSVQ---------------   67 (237)
Q Consensus        10 ~~~d~f~~~fg~~g~-~--~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~----g~G~~---------------   67 (237)
                      |+.|||++|||++++ +  ++.+++|.|+.+.++|||+|||.|+++.+.+++...|    |+|+.               
T Consensus        90 ~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G  169 (371)
T COG0484          90 DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG  169 (371)
T ss_pred             CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcC
Confidence            689999999975542 1  2346799999999999999999999999999999986    44321               


Q ss_pred             ------------------------------------eeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC---CCccEEE
Q psy11462         68 ------------------------------------LNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS---TSSEVIV  108 (237)
Q Consensus        68 ------------------------------------~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~---~~GDl~v  108 (237)
                                                          .|++.+.++++|+||||+.+|++|+++|+|++.+   ++|||||
T Consensus       170 ~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv  249 (371)
T COG0484         170 QVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYV  249 (371)
T ss_pred             eEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEE
Confidence                                                6889999999999999999999999999999997   6899999


Q ss_pred             EEEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEEE
Q psy11462        109 ITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFI  188 (237)
Q Consensus       109 ~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V  188 (237)
                      .|.|++|+.|.|+|+||+++++|++.+|++|+++.|||++|+ ++|+||++ +|+|+.++|+|+|||...+ ..+|||||
T Consensus       250 ~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G-tq~G~~~rl~gkG~p~~~~-~~~GDl~v  326 (371)
T COG0484         250 FVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG-TQTGEVFRLRGKGMPKLRS-GGRGDLYV  326 (371)
T ss_pred             EEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC-CccCcEEEEcCCCccccCC-CCcCCEEE
Confidence            999999999999999999999999999999999999999999 99999999 9999999999999998776 67899999


Q ss_pred             EEEEECCCCCCHHHHHHHHHhhccCCCCCCcchhhhHHHHHhhhcC
Q psy11462        189 HLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKSKAGN  234 (237)
Q Consensus       189 ~~~V~~P~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (237)
                      +++|.+|++|+.+|+++|+++++...+ ....+..+++++|+||.+
T Consensus       327 ~v~v~~P~~ls~~q~~lL~~~~~~~~~-~~~~~~~~~~k~k~~f~~  371 (371)
T COG0484         327 RVKVETPKNLSDEQKELLEEFAKSLGE-GPEQSPGFFDKLKNFFKG  371 (371)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhcc-ccccChhhhHHhHhhccC
Confidence            999999999999999999999997732 222222799999999974

>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712|consensus Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713|consensus Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0715|consensus Back     alignment and domain information
>KOG0714|consensus Back     alignment and domain information
>KOG0712|consensus Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 2e-21
2qld_A183 Human Hsp40 Hdj1 Length = 183 2e-21
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 3e-21
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 4e-19
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 1e-09
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 1e-09
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 6e-07
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure 
Iteration: 1

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 37  HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
           H + VSLEE+Y GC K + +  + ++P     +I N  KI+ I++K G  E T   F KE
Sbjct: 16  HDLRVSLEEIYSGCTKKMKISHKRLNPDG--KSIRNEDKILTIEVKKGWKEGTKITFPKE 73
Query: 97  PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHI 154
             + S +  ++++ + KDKPH++F R+G+D+     +SL+EAL G +  V TLD R + +
Sbjct: 74  GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPV 133
Query: 155 PITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLL 210
              D+       KV   EG+P  + P  RGDL I   + +P+ +    R  L  +L
Sbjct: 134 VFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 4e-50
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 8e-50
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 3e-48
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 3e-28
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 1e-26
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 1e-15
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 2e-10
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
 Score =  160 bits (408), Expect = 4e-50
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 8/178 (4%)

Query: 37  HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
             ++V+LEELY G  K + V  +      V     N   IV ++IKPG  + T   +S E
Sbjct: 8   VPLLVTLEELYLGKRKKIKVTRKRFIEHKV----RNEENIVEVEIKPGWKDGTKLTYSGE 63

Query: 97  ---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILH 153
                  ++  ++++I + K H  F R+   L MK  + L  ALTGF+  VTTLD+R L 
Sbjct: 64  GDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQ 123

Query: 154 IPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
           IPI ++    ++ K++ +EGMP   +P  +GDL +   I +PK L+P+ +K +   LD
Sbjct: 124 IPIKEIVN-PKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEALD 180
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.95
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.93
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.39
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.3
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 99.2
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 99.19
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 99.11
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 99.11
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.05
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 95.75
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
Probab=100.00  E-value=1.7e-47  Score=315.00  Aligned_cols=176  Identities=34%  Similarity=0.573  Sum_probs=165.4

Q ss_pred             CCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCC-CC--CCccEE
Q psy11462         31 SSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLE-YS--TSSEVI  107 (237)
Q Consensus        31 ~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~-~~--~~GDl~  107 (237)
                      +++|+.+.++|||+|||+|+++++.+.+.+.|++    |++.+.++++|.||||+++|++|+|+|+|++ .+  .+||||
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~   77 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV   77 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEE
Confidence            3789999999999999999999999999999975    5788899999999999999999999999998 44  789999


Q ss_pred             EEEEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEE
Q psy11462        108 VITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLF  187 (237)
Q Consensus       108 v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~  187 (237)
                      |+|++++|+.|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|++ +++|++++|+|+|||..++++.+||||
T Consensus        78 v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~-t~~g~~~rl~g~Gmp~~~~~~~~GDL~  156 (180)
T 2q2g_A           78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEI-VNPKTRKIVPNEGMPIKNQPGQKGDLI  156 (180)
T ss_dssp             EEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSC-CCTTCEEEETTCSCBCSSSTTCBCCEE
T ss_pred             EEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCc-cCCCEEEEECCcCCCcCCCCCCcCCEE
Confidence            9999999999999999999999999999999999999999998899999999 999999999999999876556899999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHhhc
Q psy11462        188 IHLSIDYPKFLSPDLRKTLSTLLD  211 (237)
Q Consensus       188 V~~~V~~P~~l~~~~~~ll~~~~~  211 (237)
                      |+|+|.+|++|+++|+++|+++++
T Consensus       157 V~~~V~~P~~Ls~~q~~~l~~~~p  180 (180)
T 2q2g_A          157 LEFDICFPKSLTPEQKKLIKEALD  180 (180)
T ss_dssp             EEEEEECCSCCCHHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcC
Confidence            999999999999999999999873
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 1e-19
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 5e-17
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 1e-05
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.1 bits (192), Expect = 1e-19
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 118 FWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHV 177
           F R+G DL     +S KE+L GFS T+ T+D R L +        +Q       +GMP  
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQ-TSTYPGQGMPTP 60

Query: 178 EEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
           + P  RG+L +   +DYP  L+   ++ +
Sbjct: 61  KNPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.94
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.87
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.76
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.76
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.43
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.34
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.24
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.96
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.3e-27  Score=171.23  Aligned_cols=90  Identities=31%  Similarity=0.532  Sum_probs=85.8

Q ss_pred             ceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEEEEEEEECCC
Q psy11462        117 VFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPK  196 (237)
Q Consensus       117 ~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~~~V~~P~  196 (237)
                      .|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|++ +++|+.++|+|+|||..++++.+|||||+|+|.+|+
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~-~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~   79 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP-VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI   79 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC-CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccc-cccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCC
Confidence            4999999999999999999999999999999999899999999 999999999999999887767899999999999999


Q ss_pred             CCCHHHHHHHH
Q psy11462        197 FLSPDLRKTLS  207 (237)
Q Consensus       197 ~l~~~~~~ll~  207 (237)
                      +||++|+++|+
T Consensus        80 ~ls~~qk~~lE   90 (90)
T d1c3ga2          80 SLNDAQKRAID   90 (90)
T ss_dssp             SCCTTHHHHTC
T ss_pred             CCCHHHHHhhC
Confidence            99999998863
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure